Maintainer: ‘Aljaz Jelenko <aljaz.jelenko@amis.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aljaz",
                    family = "Jelenko",
                    role = c("aut", "cre"),
                    email = "aljaz.jelenko@amis.net")
as necessary.
Maintainer: ‘Alessandro Santuz <alessandro.santuz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Henning Prömpers <henning@proempers.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Henning",
                      family = "Prömpers",
                      role = c("aut", "cre"),
                      email = "henning@proempers.net"),
               person(given = "André",
                      family = "Guimarães",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/alsguimaraes/MUS
which should likely be
  https://github.com/alsguimaraes/MUS/issues
instead.
Maintainer: ‘Kornelius Rohmeyer <rohmeyer@small-projects.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("MuToss", "Coding"),
                      family = "Team",
                      role = "aut",
                      comment = "Berlin 2010"),
               person(given = "Gilles",
                      family = "Blanchard",
                      role = "aut"),
               person(given = "Thorsten",
                      family = "Dickhaus",
                      role = "aut"),
               person(given = "Niklas",
                      family = "Hack",
                      role = "aut"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Kornelius",
                      family = "Rohmeyer",
                      role = c("aut", "cre"),
                      email = "rohmeyer@small-projects.de"),
               person(given = "Jonathan",
                      family = "Rosenblatt",
                      role = "aut"),
               person(given = "Marsel",
                      family = "Scheer",
                      role = "aut"),
               person(given = "Wiebke",
                      family = "Werft",
                      role = "aut"))
as necessary.
Maintainer: ‘Kornelius Rohmeyer <rohmeyer@small-projects.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("MuToss", "Coding"),
                      family = "Team",
                      role = "aut",
                      comment = "Berlin 2010"),
               person(given = "Gilles",
                      family = "Blanchard",
                      role = "aut"),
               person(given = "Thorsten",
                      family = "Dickhaus",
                      role = "aut"),
               person(given = "Niklas",
                      family = "Hack",
                      role = "aut"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = "aut"),
               person(given = "Kornelius",
                      family = "Rohmeyer",
                      role = c("aut", "cre"),
                      email = "rohmeyer@small-projects.de"),
               person(given = "Jonathan",
                      family = "Rosenblatt",
                      role = "aut"),
               person(given = "Marsel",
                      family = "Scheer",
                      role = "aut"),
               person(given = "Wiebke",
                      family = "Werft",
                      role = "aut"))
as necessary.
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Damiano",
                      family = "Fantini",
                      role = c("aut", "cre"),
                      email = "damiano.fantini@gmail.com"),
               person(given = "Vania",
                      family = "Vidimar",
                      role = "aut"),
               person(given = c("Joshua", "J"),
                      family = "Meeks",
                      role = "aut"))
as necessary.
Maintainer: ‘Mohit Dayal <mohitdayal2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mohit",
                    family = "Dayal",
                    role = c("aut", "cre"),
                    email = "mohitdayal2000@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) cv.glm1path.Rd:74: Lost braces
    74 | \code{\link{glm1path}}, \\code{\link{glm1}}, \code{\link{glm}}, \code{\link{family}}
       |                               ^
Maintainer: ‘Mohammed Sedki <mohammed.sedki@u-psud.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Marbac",
                      role = "aut"),
               person(given = "Mohammed",
                      family = "Sedki",
                      role = c("aut", "cre"),
                      email = "mohammed.sedki@u-psud.fr"))
as necessary.
Maintainer: ‘Mark V. Bravington <mark.bravington@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mark", "V."),
                    family = "Bravington",
                    role = c("aut", "cre"),
                    email = "mark.bravington@csiro.au")
as necessary.
Maintainer: ‘Denis Larocque <denis.larocque@hec.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denis",
                    family = "Larocque",
                    role = c("aut", "cre"),
                    email = "denis.larocque@hec.ca")
as necessary.
Maintainer: ‘Nelson Lee Afanador <nelson.afanador@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nelson", "Lee"),
                      family = "Afanador",
                      role = c("aut", "cre"),
                      email = "nelson.afanador@gmail.com"),
               person(given = "Thanh",
                      family = "Tran",
                      role = "aut"),
               person(given = "Lionel",
                      family = "Blanchet",
                      role = "aut"),
               person(given = "Richard",
                      family = "Baumgartner",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘DFA.R’ ‘mvDFA.R’ ‘simulate_Lorenz_noise.R’
Maintainer: ‘Justin Williams <williazo@ucla.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The Description field contains
  Williams, J.R, and Crespi, C.M. (2020) <arxiv:2008.13767>. The methods
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) bal.Rd:156: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mvhist.Rd: mvmesh, SolidRectangle, mvhist, V2Hrep
  mvhistMisc.Rd: V2Hrep
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John P. Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "P."),
                    family = "Nolan",
                    role = c("aut", "cre"),
                    email = "jpnolan@american.edu")
as necessary.
Maintainer: ‘Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antonio",
                    family = "Gasparrini",
                    role = c("aut", "cre"),
                    email = "antonio.gasparrini@lshtm.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘Arthur Allignol <arthur.allignol@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arthur",
                    family = "Allignol",
                    role = c("aut", "cre"),
                    email = "arthur.allignol@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URI:
  URI: /https://cran.r-project.org/web/packages/mvna/index.html
    From: README.md
Maintainer: ‘ZHANG Chen <447974102@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "ZHANG",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "447974102@qq.com")
as necessary.
Maintainer: ‘Frank Technow <mvnggrad@fastmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frank",
                    family = "Technow",
                    role = c("aut", "cre"),
                    email = "mvnggrad@fastmail.com")
as necessary.
Maintainer: ‘Hesen Li <li.hesen.21@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hesen",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "li.hesen.21@gmail.com")
as necessary.
checkRd: (-1) MVNtestchar-package.Rd:16-17: Lost braces; missing escapes or markup?
    16 | {Provides a test of multivariate normality of a sample which does not require estimation of the nuisance parameters, the mean      vector and covariance matrix.  Rather, a sequence of transformations removes these nuisance parameters, resulting in a set of    sample matrices that are positive definite.  If, and only if the original data is multivariate normal, these matrices are       uniformly distributed on the space of positive definite matrices in the unit hyper-rectangle.  The package performs a goodness    of fit test of this hypothesis. In addition to the test, functions in the package give visualizations of the  support region    of positive definite matrices for p equals 2.
       | ^
Maintainer: ‘P. Filzmoser <P.Filzmoser@tuwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Filzmoser",
                      role = "aut",
                      email = "P.Filzmoser@tuwien.ac.at"),
               person(given = "Moritz",
                      family = "Gschwandtner",
                      role = "aut",
                      email = "e0125439@student.tuwien.ac.at"),
               person(given = "P.",
                      family = "Filzmoser",
                      role = "cre",
                      email = "P.Filzmoser@tuwien.ac.at"))
as necessary.
checkRd: (-1) pkb.Rd:14: Escaped LaTeX specials: \# \# \#
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Constantin Weiser <constantin.weiser@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Constantin",
                    family = "Weiser",
                    role = c("aut", "cre"),
                    email = "constantin.weiser@gmail.com",
                    comment = "University Mainz / Germany")
as necessary.
'library' or 'require' call not declared from: ‘mvtnorm’
Maintainer: ‘Douglas Whitaker <douglas.whitaker@msvu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Douglas",
                    family = "Whitaker",
                    role = c("aut", "cre"),
                    email = "douglas.whitaker@msvu.ca")
as necessary.
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URIs:
  URI: jean-eudes.dazard@case.edu
    From: README.md
  URI: huaxu77@gmail.com
    From: README.md
  URI: ahs4@case.edu
    From: README.md
Maintainer: ‘Tommy Jones <jones.thos.w@gmail.com>’

The Description field contains
  Jones (2019) <arXiv:1911.11061>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Elizabeth Gonzalez Estrada <egonzalez@colpos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elizabeth",
                      family = "Gonzalez-Estrada",
                      role = "aut"),
               person(given = c("Jose", "A."),
                      family = "Villasenor-Alva",
                      role = "aut"),
               person(given = c("Elizabeth", "Gonzalez"),
                      family = "Estrada",
                      role = "cre",
                      email = "egonzalez@colpos.mx"))
as necessary.
Maintainer: ‘Antonio Parisi <antonio.parisi@uniroma2.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Parisi",
                      role = c("aut", "cre"),
                      email = "antonio.parisi@uniroma2.it"),
               person(given = "Brunero",
                      family = "Liseo",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = "ctb"),
               person(given = "Romain",
                      family = "Francois",
                      role = "ctb"))
as necessary.
Maintainer: ‘Han Chen <Han.Chen.2@uth.tmc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Han",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "han.chen.2@uth.tmc.edu")
as necessary.
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
Maintainer: ‘Sebastian Schutte <schuttesebastian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastian",
                      family = "Schutte",
                      role = c("aut", "cre"),
                      email = "schuttesebastian@gmail.com"),
               person(given = "Karsten",
                      family = "Donnay",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  matchedwake.Rd: cem, att, glm.nb
  slideWakeMatch.Rd: cem, att, glm.nb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("B", "N"),
                    family = "Mandal",
                    role = c("aut", "cre"),
                    email = "mandal.stat@gmail.com")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘get_individual_algebra_results.R’
Maintainer: ‘S. Ramachandran<ramu@igib.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Deepika",
                      family = "Kulshreshtha",
                      role = "aut"),
               person(given = "Rupanjali",
                      family = "Chaudhuri",
                      role = "aut"),
               person(given = "Surabhi",
                      family = "Seth",
                      role = "aut"),
               person(given = "S.",
                      family = "Ramachandran",
                      role = c("aut", "cre"),
                      email = "ramu@igib.in"))
as necessary.
Maintainer: ‘Fu-Chang Hu <fuchang.hu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("International-Harvard", "Statistical", "Consulting"),
                      family = "Company",
                      role = "aut",
                      email = "nhsc2010@hotmail.com"),
               person(given = "Fu-Chang",
                      family = "Hu",
                      role = "cre",
                      email = "fuchang.hu@gmail.com"))
as necessary.
checkRd: (-1) mzipmed_data.Rd:22: Lost braces; missing escapes or markup?
    22 | @source {Simulated to serve as an example}
       |         ^
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

The Description field contains
  <doi:10.1109/TPAMI.2018.2889473>, <arXiv:1603.09320>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Gregory Jefferis <jefferis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephane",
                      family = "Mangenat",
                      role = "aut",
                      comment = "for 'libnabo'"),
               person(given = "Gregory",
                      family = "Jefferis",
                      role = c("aut", "cre"),
                      email = "jefferis@gmail.com"))
as necessary.
Maintainer: ‘Yaofang Hu <yaofangh@smu.edu>’

The Description field contains
  Wang (2023) <arXiv:2306.15616>. In addition to NAC, this package
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sun-joo Lee <sjlee@air.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sun-joo",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "sjlee@air.org"),
               person(given = "Eric",
                      family = "Buehler",
                      role = "aut"),
               person(given = "Paul",
                      family = "Bailey",
                      role = "ctb"))
as necessary.
Maintainer: ‘Emmanuel Sikali <Emmanuel.Sikali@ed.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("NAEP", "Primer", "data", "by", "Emmanuel", "Sikali.", "Creation", "of", "R", "package", "by", "Paul"),
                      family = "Bailey",
                      role = "aut"),
               person(given = "Michael",
                      family = "Lee.",
                      role = "aut"),
               person(given = "Emmanuel",
                      family = "Sikali",
                      role = "cre",
                      email = "Emmanuel.Sikali@ed.gov"))
as necessary.
checkRd: (-1) M36NT2PM.dat.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) M36NT2PM.dat.Rd:38: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Qingliang Fan <michaelqfan@xmu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingliang",
                      family = "Fan",
                      role = c("aut", "cre"),
                      email = "michaelqfan@xmu.edu.cn"),
               person(given = "KongYu",
                      family = "He",
                      role = "aut"),
               person(given = "Wei",
                      family = "Zhong",
                      role = "aut"))
as necessary.
checkRd: (-1) DSIVdata.Rd:15-23: Lost braces
    15 | for(i in 1:50){
       |               ^
checkRd: (-1) DSIVdata.Rd:17-21: Lost braces
    17 |   for(j in 1:50){
       |                 ^
checkRd: (-1) DSIVdata.Rd:31-39: Lost braces
    31 | for(i in 1:20){
       |               ^
checkRd: (-1) DSIVdata.Rd:33-37: Lost braces
    33 |   for(j in 1:20){
       |                 ^
checkRd: (-1) DSLIVEdata.Rd:10-18: Lost braces
    10 | for(i in 1:200){
       |                ^
checkRd: (-1) DSLIVEdata.Rd:12-16: Lost braces
    12 |   for(j in 1:200){
       |                  ^
checkRd: (-1) DSLIVEdata.Rd:26-34: Lost braces
    26 | for(i in 1:20){
       |               ^
checkRd: (-1) DSLIVEdata.Rd:28-32: Lost braces
    28 |   for(j in 1:20){
       |                 ^
checkRd: (-1) DSLIVEdata.Rd:50-54: Lost braces
    50 | for(kk in 1:length(p)){
       |                       ^
checkRd: (-1) drop_name_crossref.Rd:49: Lost braces; missing escapes or markup?
    49 | Takes one or several dois and extracts information from Crossref, then processes them into visual citations with \code{\link{drop_name}}. Requires {rcrossref} > v1.1, see README for further details.
       |                                                                                                                                                    ^
Maintainer: ‘Alencar Xavier <alenxav@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alencar",
                      family = "Xavier",
                      role = c("aut", "cre"),
                      email = "alenxav@gmail.com"),
               person(given = "William",
                      family = "Muir",
                      role = "aut"),
               person(given = "Katy",
                      family = "Rainey",
                      role = "aut"),
               person(given = "Shizhong",
                      family = "Xu.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
'::' or ':::' import not declared from: ‘Matrix’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘impute_below.Rd’ ‘impute_factor.Rd’ ‘impute_fixed.Rd’
    ‘impute_mean.Rd’ ‘impute_median.Rd’ ‘impute_mode.Rd’ ‘impute_zero.Rd’
    ‘replace_na_with.Rd’
File ‘nanoparquet/libs/nanoparquet.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Taha Zaghdoudi <zedtaha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Taha",
                    family = "Zaghdoudi",
                    role = c("aut", "cre"),
                    email = "zedtaha@gmail.com")
as necessary.
checkRd: (-1) fod.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fod.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fod.Rd:14: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Michael Schubert <mschu.dev@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Schubert",
                    role = c("aut", "cre"),
                    email = "mschu.dev@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
File ‘naryn/libs/naryn.so’:
  Found non-API call to R: ‘Rf_GetOption’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Eduardo Flores <eduardo@enelmargen.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eduardo",
                    family = "Flores",
                    role = c("aut", "cre"),
                    email = "eduardo@enelmargen.org")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Version (2018-01-22)
    Version  (2017-08-22)
    Version
Maintainer: ‘Guo Yu <gy63@cornell.edu>’

The Description field contains
  high-dimensional linear models of Yu, Bien (2017) <arXiv:1712.02412>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kosei Abe <mail@recyclebin.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kosei",
                    family = "Abe",
                    role = c("aut", "cre"),
                    email = "mail@recyclebin.jp")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘activate.Rd’
Maintainer: ‘Hiroto Katsumata <hrt.katsumata@gmail.com>’

The Description field contains
  <arXiv:2005.10998>, which improves the inverse probability weighting by
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Richard Wen <rrwen.dev@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Malika Charrad <malika.charrad.1@ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Malika",
                      family = "Charrad",
                      role = c("aut", "cre"),
                      email = "malika.charrad.1@ulaval.ca"),
               person(given = "Nadia",
                      family = "Ghazzali",
                      role = "aut"),
               person(given = "Veronique",
                      family = "Boiteau",
                      role = "aut"),
               person(given = "Azam",
                      family = "Niknafs",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) NbClust.Rd:50: Lost braces; missing escapes or markup?
    50 |       \item \bold{Average} : The distance \eqn{D_{ij}}{D_ij} between two clusters \eqn{C_{i}}{C_i} and \eqn{C_{j}}{C_j} is the mean of the distances between the pair of points {x} and {y}, where \eqn{x \in C_{i}, y \in C_{j}}{x in C_i, y in C_j}.
       |                                                                                                                                                                                 ^
checkRd: (-1) NbClust.Rd:50: Lost braces; missing escapes or markup?
    50 |       \item \bold{Average} : The distance \eqn{D_{ij}}{D_ij} between two clusters \eqn{C_{i}}{C_i} and \eqn{C_{j}}{C_j} is the mean of the distances between the pair of points {x} and {y}, where \eqn{x \in C_{i}, y \in C_{j}}{x in C_i, y in C_j}.
       |                                                                                                                                                                                         ^
Maintainer: ‘Philipp Angerer <philipp.angerer@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philipp",
                    family = "Angerer",
                    role = c("aut", "cre"),
                    email = "philipp.angerer@helmholtz-muenchen.de")
as necessary.
checkRd: (-1) nbconvert.Rd:49: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) nbconvert.Rd:50: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Feiming Chen <feimingchen@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feiming",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feimingchen@yahoo.com")
as necessary.
Maintainer: ‘Yanming Di <diy@stat.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yanming",
                      family = "Di",
                      role = c("aut", "cre"),
                      email = "diy@stat.oregonstate.edu"),
               person(given = c("Daniel", "W"),
                      family = "Schafer",
                      role = "aut",
                      email = "schafer@stat.oregonstate.edu"),
               person(given = c("with", "contributions", "from", "Jason", "S"),
                      family = "Cumbie",
                      role = "aut",
                      email = "cumbiej@onid.orst.edu"),
               person(given = c("Jeff", "H"),
                      family = "Chang.",
                      role = "aut",
                      email = "changj@cgrb.oregonstate.edu"))
as necessary.
Maintainer: ‘Zeus Gracia-Tabuenca <zgtabuenca@comunidad.unam.mx>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Marina Gomtsyan <mgomtsian@gmail.com>’

The Description field contains
  <arXiv:2307.00929>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyun-Seop",
                    family = "Bae",
                    role = c("aut", "cre"),
                    email = "k@acr.kr")
as necessary.
Maintainer: ‘Jon Eastman <jonathan.eastman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Eastman",
                    role = c("aut", "cre"),
                    email = "jonathan.eastman@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Nicholas Cooper <njcooper@gmx.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Cooper",
                    role = c("aut", "cre"),
                    email = "njcooper@gmx.co.uk")
as necessary.
Maintainer: ‘Dongshin Kim <dongshin.kim@live.com>’

The Description field contains
  Kim, D., Lee, S. and Kwon, S. (2018) <arXiv:1811.05061>, Lee, S., Kwon,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) ncpen.Rd:108: Lost braces; missing escapes or markup?
   108 |   \item{gamma}{extra shrinkage parameter for \code{classo} and {sridge} only.}
       |                                                                ^
checkRd: (-1) ncpen.reg.Rd:109: Lost braces; missing escapes or markup?
   109 |   \item{gamma}{extra shrinkage parameter for \code{classo} and {sridge} only.}
       |                                                                ^
Maintainer: ‘Gavin Melville <gavin.melville@dpi.nsw.gov.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "GJ",
                      family = "Melville",
                      role = "aut"),
               person(given = "Gavin",
                      family = "Melville",
                      role = "cre",
                      email = "gavin.melville@dpi.nsw.gov.au"))
as necessary.
Maintainer: ‘Bouchra R. Nasri <bouchra.nasri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Bouchra", "R."),
                    family = "Nasri",
                    role = c("aut", "cre"),
                    email = "bouchra.nasri@gmail.com")
as necessary.
Maintainer: ‘Sebastian J. Teran Hidalgo <sebastianteranhidalgo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sebastian", "J.", "Teran"),
                      family = "Hidalgo",
                      role = c("aut", "cre"),
                      email = "sebastianteranhidalgo@gmail.com"),
               person(given = "Shuangge",
                      family = "Ma",
                      role = "aut"),
               person(given = "Ruofan",
                      family = "Bie",
                      role = "aut"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: sebastianteranhidalgo@gmail.com
    From: man/ancut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/awncut.Rd
  URI: sebastianteranhidalgo@gmail.com
    From: man/ncut.Rd
  URI: commits/master
    From: README.md
  URI: /commits/master
    From: README.md
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assign_fold.Rd’
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Joseph Rigdon <jrigdon@wakehealth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Rigdon",
                    role = c("aut", "cre"),
                    email = "jrigdon@wakehealth.edu")
as necessary.
Maintainer: ‘Edilberto Cepeda <ecepedac@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Edilberto",
                      family = "Cepeda-Cuervo",
                      role = "aut"),
               person(given = c("Maria", "Victoria"),
                      family = "Cifuentes-Amado",
                      role = "aut"),
               person(given = "Margarita",
                      family = "Marin",
                      role = "aut"),
               person(given = "Edilberto",
                      family = "Cepeda",
                      role = "cre",
                      email = "ecepedac@unal.edu.co"))
as necessary.
Maintainer: ‘Mamadou Yauck <yauck.mamadou@uqam.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mamadou",
                      family = "Yauck",
                      role = c("aut", "cre"),
                      email = "yauck.mamadou@uqam.ca"),
               person(given = c("Erica", "E.", "M."),
                      family = "Moodie",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘functions.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘neon_cloud.R’
Maintainer: ‘Peifeng Ruan <pruan12@fudan.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peifeng",
                    family = "Ruan",
                    role = c("aut", "cre"),
                    email = "pruan12@fudan.edu.cn")
as necessary.
Maintainer: ‘Joseph Stachelek <stachel2@msu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Olanrewaju Akande <akandelanre13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Quanli",
                      family = "Wang",
                      role = "aut"),
               person(given = "Olanrewaju",
                      family = "Akande",
                      role = c("aut", "cre"),
                      email = "akandelanre13@gmail.com"),
               person(given = "Jingchen",
                      family = "Hu",
                      role = "aut"),
               person(given = "Jerry",
                      family = "Reiter",
                      role = "aut"),
               person(given = "Andres",
                      family = "Barrientos",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.data.frame.predict.R’
checkRd: (-1) GSS.Rd:17: Lost braces
    17 | code{2016}.}
       |     ^
Maintainer: ‘Sean J Westwood <seanjw@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mike",
                      family = "Nowak",
                      role = "aut",
                      email = "michael.nowak@gmail.com"),
               person(given = "Solomon",
                      family = "Messing",
                      role = "aut",
                      email = "solomon.messing@gmail.com"),
               person(given = c("Sean", "J"),
                      family = "Westwood",
                      role = c("aut", "cre"),
                      email = "seanjw@stanford.edu"),
               person(given = "Dan",
                      family = "McFarland",
                      role = "aut",
                      email = "dmcfarla@stanford.edu"))
as necessary.
Maintainer: ‘Shuchismita Sarkar <ssarkar@bgsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shuchismita",
                      family = "Sarkar",
                      role = c("aut", "cre"),
                      email = "ssarkar@bgsu.edu"),
               person(given = "Volodymyr",
                      family = "Melnykov",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/netClust.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Teague R. Henry <trhenry@email.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Teague", "R."),
                    family = "Henry",
                    role = c("aut", "cre"),
                    email = "trhenry@email.unc.edu")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/netcontrol.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Li-Pang Chen <lchen723@nccu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Li-Pang",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "lchen723@nccu.edu.tw")
as necessary.
Found the following significant warnings:
  infection.cpp:58:25: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  infection.cpp:162:25: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/netdiffuseR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.select.Rd: select
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Tianshi Lu <tianshi.lu@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianshi",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "tianshi.lu@utsouthwestern.edu")
as necessary.
Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karline",
                      family = "Soetaert",
                      role = c("aut", "cre"),
                      email = "karline.soetaert@nioz.nl"),
               person(given = c("Julius", "Kipyegon"),
                      family = "Kones",
                      role = "aut",
                      email = "jkones@uonbi.ac.ke"),
               person(given = "Dick",
                      family = "van Oevelen",
                      role = "aut",
                      email = "dick.vanoevelen@nioz.nl"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Frank W. Marrs <frank.marrs@colostate.edu>’

The Description field contains
  <arXiv:1701.05530>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  netStats.cpp:51:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  netStats.cpp:51:54: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  properties.cpp:132:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/NetRep.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
checkRd: (-1) PVmodule.Rd:27: Lost braces; missing escapes or markup?
    27 | In the resulting netSEM model, time was used as a proxy for damp heat exposure stress (S) variable and $P_{max}$ (maximum power generated by the modules) was used as the performance level response ($R$) variable, several mechanistic variables ($M$) were obtained through chemical evaluation methods, including FTIR and TGA  on EVA encapsulant. 
       |                                                                                                           ^
checkRd: (-1) netSEMp1.Rd:55: Lost braces
    55 | For example, in the quadratic functional form y ~ b0 + b1x + b2x^2, the three P-values correspond two those of \\hat{b0}, \\hat{b1} and \\hat{b2}, respectively. 
       |                                                                                                                     ^
checkRd: (-1) netSEMp1.Rd:55: Lost braces
    55 | For example, in the quadratic functional form y ~ b0 + b1x + b2x^2, the three P-values correspond two those of \\hat{b0}, \\hat{b1} and \\hat{b2}, respectively. 
       |                                                                                                                                ^
checkRd: (-1) netSEMp1.Rd:55: Lost braces
    55 | For example, in the quadratic functional form y ~ b0 + b1x + b2x^2, the three P-values correspond two those of \\hat{b0}, \\hat{b1} and \\hat{b2}, respectively. 
       |                                                                                                                                              ^
Maintainer: ‘Christian Brownlees <christian.brownlees@upf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Brownlees",
                    role = c("aut", "cre"),
                    email = "christian.brownlees@upf.edu")
as necessary.
'library' or 'require' call not declared from: ‘MASS’
Maintainer: ‘Arash A. Amini <aaamini@ucla.edu>’

The Description field contains
  <doi:10.1214/16-AOS1457> Zhang and Amini (2020) <arXiv:2012.15047> Le
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) spec_clust.Rd:33: Lost braces; missing escapes or markup?
    33 | A label vector of size n x 1 with elements in {1,2,...,K}
       |                                               ^
Maintainer: ‘Minghui Wang <m.h.wang@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minghui",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "m.h.wang@live.com"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
checkRd: (-1) rc.plot.ideogram.Rd:20: Lost braces; missing escapes or markup?
    20 |  \item{las}{numeric in {0,1,2,3}; the style of chromosome labels. 0, always parallel to the track [default]; 1, always horizontal; 2, always perpendicular to the track; 3, always vertical.}
       |                        ^
Maintainer: ‘Jong Hee Park <jongheepark@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jong", "Hee"),
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "jongheepark@snu.ac.kr"),
               person(given = "Yunkyu",
                      family = "Sohn",
                      role = "aut"))
as necessary.
checkRd: (-1) NetworkChange.Rd:163: Escaped LaTeX specials: \&
checkRd: (-1) NetworkChangeRobust.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) NetworkStatic.Rd:142: Escaped LaTeX specials: \&
checkRd: (-1) nodeLogic.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nodeLogic.Rd:46: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘map.png’ ‘maze.html’
Maintainer: ‘Fridolin Linder <fridolin.linder@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘policies.Rd’:
    https://doi.org/10.7910/DVN/CVYSR7
Specified C++11: please drop specification unless essential
Maintainer: ‘Ian Laga <ilaga25@gmail.com>’

The Description field contains
  Niu, X (2021) <arXiv:2109.10204>, Zheng, T., Salganik, M. J., and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) networktree.Rd:56: Lost braces; missing escapes or markup?
    56 | with a matrix response {y}. \code{x1} and \code{x2} are used as
       |                        ^
Maintainer: ‘Bradley Buchsbaum <brad.buchsbaum@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bradley", "R."),
                      family = "Buchsbaum",
                      role = "aut"),
               person(given = "Bradley",
                      family = "Buchsbaum",
                      role = "cre",
                      email = "brad.buchsbaum@gmail.com"))
as necessary.
Maintainer: ‘Surya Tokdar <surya.tokdar@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Surya",
                    family = "Tokdar",
                    role = c("aut", "cre"),
                    email = "surya.tokdar@duke.edu")
as necessary.

The Description field contains
  may be found at <arXiv:1911.04387>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘visualizations.R’
Maintainer: ‘Saralees Nadarajah <Saralees.Nadarajah@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Saralees",
                      family = "Nadarajah",
                      role = c("aut", "cre"),
                      email = "saralees.nadarajah@manchester.ac.uk"),
               person(given = "Ricardo",
                      family = "Rocha",
                      role = "aut"))
as necessary.
Maintainer: ‘Ningning Xu <n.xu@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ningning",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "n.xu@lumc.nl")
as necessary.

The Description field contains
  (2021) <arXiv:2001.01541> for detailed description.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Carlos Martinez <cmmm7031@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr", "Carlos", "Miguel", "Martinez"),
                      family = "Manrique",
                      role = "aut"),
               person(given = "Carlos",
                      family = "Martinez",
                      role = "cre",
                      email = "cmmm7031@gmail.com"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/nextGenShinyApps
which should likely be
  https://github.com/oobianom/nextGenShinyApps/issues
instead.
Specified C++14: please drop specification unless essential
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.

The Description field contains
  Robotham & Howlett (2018) <arXiv:1805.09550>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chung-hong Chan <chainsawtiney@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chung-hong",
                    family = "Chan",
                    role = c("aut", "cre"),
                    email = "chainsawtiney@gmail.com")
as necessary.
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Hughes",
                      role = c("aut", "cre"),
                      email = "drjphughesjr@gmail.com"),
               person(given = "Xiaohui",
                      family = "Cui",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Bayesian spatial filtering model of Hughes (2017) <arXiv:1706.04651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Randall Pruim <rpruim@calvin.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Randall",
                    family = "Pruim",
                    role = c("aut", "cre"),
                    email = "rpruim@calvin.edu")
as necessary.

The Description field contains
  http://www.cdc.gov/nchs/nhanes.htm for details.
Please enclose URLs in angle brackets (<...>).
checkRd: (-1) NHANES.Rd:278: Lost braces
   278 | \code{AgeFirstMarij}{Age participant first tried marijuana. Reported for participants aged 18 to 59 years.}
       |                     ^
Maintainer: ‘D. Lukke Sweet <dls229@zips.uakron.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("D.", "Lukke"),
                    family = "Sweet",
                    role = c("aut", "cre"),
                    email = "dls229@zips.uakron.edu")
as necessary.
Maintainer: ‘Ana C. Cebrian <acebrian@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ana", "C."),
                    family = "Cebrian",
                    role = c("aut", "cre"),
                    email = "acebrian@unizar.es")
as necessary.
checkRd: (-1) graphresU.fun.Rd:72: Escaped LaTeX specials: \&
Maintainer: ‘Giovanni Tramonti <giovanni.tramonti@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giovanni",
                    family = "Tramonti",
                    role = c("aut", "cre"),
                    email = "giovanni.tramonti@ed.ac.uk")
as necessary.
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [42s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(NHSRplotthedots)
  > 
  > test_check("NHSRplotthedots")
  [ FAIL 2 | WARN 733 | SKIP 3 | PASS 430 ]
  
  ══ Skipped tests (3) ═══════════════════════════════════════════════════════════
  • On CRAN (3): 'test-geom_ptd_icon.R:140:3', 'test-ptd_spc.R:303:3',
    'test-ptd_spc_standard.R:22:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-geom_ptd_icon.R:21:3'): it set's up GeomPTDIcon correctly ────
  unclass(GeomPTDIcon$default_aes) (`actual`) not equal to setNames(list(), character()) (`expected`).
  
  `attr(actual, 'S7_class')` is an S7 object of class <S7_class>
  `attr(expected, 'S7_class')` is absent
  ── Failure ('test-ptd_create_ggplot.R:79:3'): it returns a ggplot object ───────
  p$labels (`actual`) not equal to list(...) (`expected`).
  
  `actual` is an S7 object of class <ggplot2::labels>
  `expected` is a list
  
  [ FAIL 2 | WARN 733 | SKIP 3 | PASS 430 ]
  Error: Test failures
  Execution halted
checkRd: (-1) bootstrap_param_est.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootstrap_param_est.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootstrap_param_est.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_emission.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_emission.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_emission.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute_ref.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute_ref.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) impute_ref.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_data.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_data.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_data.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "geyer@umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "geyer@umn.edu"))
as necessary.
Maintainer: ‘Cai-qing YANG <yangcq_ivy@163.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/Yangcq-Ivy/NicheBarcoding
which should likely be
  https://github.com/Yangcq-Ivy/NicheBarcoding/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘create_comparison.R’ ‘create_comparisons.Rd’
    ‘extract_group_metrics.R’ ‘extract_group_metrics.Rd’
    ‘extract_layman.R’ ‘extract_layman.Rd’ ‘extract_mu.R’ ‘extract_mu.Rd’
    ‘extract_niche_size.R’ ‘extract_overlap.R’ ‘extract_sigma.R’
    ‘extract_similarities.R’ ‘extract_similarities.Rd’ ‘niche_ellipse.R’
Maintainer: ‘Timothy Koscik <timothy-koscik@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "R."),
                      family = "Koscik",
                      role = c("aut", "cre", "cph")),
               person(given = "Timothy",
                      family = "Koscik",
                      role = "cre",
                      email = "timothy-koscik@uiowa.edu"))
as necessary.
Maintainer: ‘Max Hughes-Brandl <gordonmax@hotmail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Max",
                    family = "Hughes-Brandl",
                    role = c("aut", "cre"),
                    email = "gordonmax@hotmail.de")
as necessary.
Maintainer: ‘Natalya Pya Arnqvist <nat.pya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Natalya", "Pya"),
                      family = "Arnqvist",
                      role = c("aut", "cre"),
                      email = "nat.pya@gmail.com"),
               person(given = "Vassilly",
                      family = "Voinov",
                      role = "aut"),
               person(given = "Rashid",
                      family = "Makarov",
                      role = "aut"),
               person(given = "Yevgeniy",
                      family = "Voinov",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotIncMatrix.Rd: scale_fill_distiller
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘David Pleydell <david.pleydell@inrae.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Pleydell",
                    role = c("aut", "cre", "cph"),
                    email = "david.pleydell@inrae.fr",
                    comment = c("Package developer", ORCID = "0000-0002-6450-1475"))
as necessary.
Maintainer: ‘Lennart Johansson <l.johansson@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "de Weerd",
                      role = "aut"),
               person(given = "Lennart",
                      family = "Johansson",
                      role = c("aut", "cre"),
                      email = "l.johansson@umcg.nl"))
as necessary.
Maintainer: ‘Yikai Wang <johnzon.wyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yikai",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "johnzon.wyk@gmail.com"),
               person(given = "Xiao",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Douglas Bates <bates@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("original", "from", "National", "Institutes", "for"),
                      family = "Standards",
                      role = "aut"),
               person(given = c("Technology", "http://www.itl.nist.gov/div898/strd/nls/nls_main.shtml", "R", "port", "by", "Douglas"),
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu",
                      comment = "NIST"),
               person(given = "Douglas",
                      family = "Bates",
                      role = "cre",
                      email = "bates@stat.wisc.edu"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Troy D. Hill <Hill.Troy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Troy", "D."),
                      family = "Hill",
                      role = c("aut", "cre"),
                      email = "hill.troy@gmail.com"),
               person(given = c("Nathalie", "R."),
                      family = "Sommer",
                      role = "aut"),
               person(given = c("Caroline", "R."),
                      family = "Kanaskie",
                      role = "aut"),
               person(given = c("Emily", "A."),
                      family = "Santos",
                      role = "aut"),
               person(given = c("Autumn", "J."),
                      family = "Oczkowski",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CN_mass_data.Rd’:
    \keyword{data,}
    \keyword{isotopes,}
  File ‘allometry.Rd’:
    \keyword{data,}
  File ‘dea.Rd’:
    \keyword{data,}
    \keyword{denitrification,}
  File ‘stemHeights.Rd’:
    \keyword{NAPP,}
    \keyword{biomass,}
    \keyword{data,}
    \keyword{height,}

Found the following URLs which should use \doi (with the DOI name only):
  File ‘CN_mass_data.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
  File ‘allometry.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
  File ‘bCM.Rd’:
    https://doi.org/10.1002/ecy.1600
  File ‘dea.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
  File ‘stemHeights.Rd’:
    https://doi.org/10.1016/j.dib.2018.09.133
    https://doi.org/10.1016/j.jembe.2018.07.006
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_model_params.R’ ‘level_from_quantiles.R’ ‘make_request.R’
    ‘nixtla_client_cross_validation.R’ ‘nixtla_client_detect_anomalies.R’
    ‘nixtla_client_forecast.R’ ‘nixtla_client_historic.R’
    ‘nixtla_client_plot.R’ ‘nixtla_validate_api_key.R’
    ‘validate_exogenous.R’
Maintainer: ‘Xianyan Chen <xychen@uga.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xianyan",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "xychen@uga.edu"),
               person(given = "Xiangrong",
                      family = "Yin",
                      role = "aut",
                      email = "yinxiangrong@uky.edu"))
as necessary.
Maintainer: ‘Berend Hasselman <bhh@xs4all.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Berend",
                    family = "Hasselman",
                    role = c("aut", "cre"),
                    email = "bhh@xs4all.nl")
as necessary.
Specified C++11: please drop specification unless essential
Author field differs from that derived from Authors@R
  Author:    ‘José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (02zz1nj61)’
  Authors@R: ‘José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (ROR: <https://ror.org/02zz1nj61>)’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘addBaseline1exp.Rd’ ‘addBaselineConst.Rd’ ‘addBaselineExp.Rd’
    ‘addBaselineLin.Rd’ ‘addCmtProp.Rd’ ‘addDepot.Rd’ ‘addDirectLin.Rd’
    ‘addEffectCmtLin.Rd’ ‘addEta.Rd’ ‘addIndirect.Rd’ ‘addIndirectLin.Rd’
    ‘addLogEstimates.Rd’ ‘addResErr.Rd’ ‘addTransit.Rd’
    ‘addWeibullAbs.Rd’ ‘convertEmax.Rd’ ‘convertEmaxHill.Rd’
    ‘convertKinR0.Rd’ ‘convertLogLin.Rd’ ‘convertMM.Rd’ ‘convertQuad.Rd’
    ‘fakeCc.Rd’ ‘pkTrans.Rd’ ‘removeDepot.Rd’ ‘removeLinesAndInis.Rd’
    ‘removeTransit.Rd’
Maintainer: ‘Carme Font <carme.font.moragon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carme",
                    family = "Font",
                    role = c("aut", "cre"),
                    email = "carme.font.moragon@gmail.com")
as necessary.
Maintainer: ‘Tianwei Yu<yutianwei@cuhk.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tianwei",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "yutianwei@cuhk.edu.cn"),
               person(given = "Haodong",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘David Benkeser <benkeser@emory.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘wine.Rd’:
    https://doi.org/10.1016/j.dss.2009.05.016
checkRd: (-1) dot-make_long_data.Rd:44: Lost braces; missing escapes or markup?
    44 | training sample), psi (the value of this observations Psihat(P_{n,B_n}^0)),
       |                                                                ^
checkRd: (-1) dot-make_long_data_nested_cv.Rd:49: Lost braces; missing escapes or markup?
    49 | training sample), psi (the value of this observations Psihat(P_{n,B_n}^0)),
       |                                                                ^
Maintainer: ‘Jin Liu <Veronica.Liu0206@gmail.com>’

The Description field contains
  <arXiv:2302.03237v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘G. Grothendieck <ggrothendieck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "G.",
                      family = "Grothendieck",
                      role = c("aut", "cre"),
                      email = "ggrothendieck@gmail.com"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "aut",
                      comment = "nls"))
as necessary.
checkRd: (-1) anova.Rd:19: Lost braces
    19 |   Returns an object of class code{anova}.  These objects represent
       |                                  ^
Maintainer: ‘Rafael Benitez <rabesua@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mariano",
                      family = "Rodriguez-Arias",
                      role = "aut",
                      email = "arias@unex.es"),
               person(given = c("Juan", "Antonio"),
                      family = "Fernandez",
                      role = "aut",
                      email = "jfernandck@alumnos.unex.es"),
               person(given = "Javier",
                      family = "Cabello",
                      role = "aut",
                      email = "coco@unex.es"),
               person(given = "Rafael",
                      family = "Benitez",
                      role = c("aut", "cre"),
                      email = "rabesua@uv.es"))
as necessary.
Maintainer: ‘Oleh Komashko <oleg_komashko@ukr.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oleh",
                    family = "Komashko",
                    role = c("aut", "cre"),
                    email = "oleg_komashko@ukr.net")
as necessary.
Maintainer: ‘Burak Kuersad Guenhan <burakgunhan@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  nmarank.Rd: netmeta
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘David Phillippo <david.phillippo@bristol.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Suhai (Timothy) Liu <tim.liu@alumni.duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suhai",
                      family = "Liu",
                      role = "aut",
                      comment = "Timothy"),
               person(given = "Suhai",
                      family = "Liu",
                      role = "cre",
                      email = "tim.liu@alumni.duke.edu",
                      comment = "Timothy"))
as necessary.
Maintainer: ‘Joseph Lipoff <josephlipoff@msn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "V."),
                      family = "Lipoff",
                      role = "aut"),
               person(given = "Will",
                      family = "Pauls",
                      role = "aut"),
               person(given = c("Kaylin", "C."),
                      family = "Dobbs",
                      role = "aut"),
               person(given = c("Jordan", "L."),
                      family = "Jensen",
                      role = "aut"),
               person(given = "Kevin",
                      family = "Woods",
                      role = "aut"),
               person(given = c("Evan", "T."),
                      family = "Johnson",
                      role = "aut"),
               person(given = c("Benjamin", "F."),
                      family = "Timson",
                      role = "aut"),
               person(given = c("Scott", "D.", "Zimmerman,and", "Paul"),
                      family = "Plummer",
                      role = "aut"),
               person(given = "Joseph",
                      family = "Lipoff",
                      role = "cre",
                      email = "josephlipoff@msn.com"))
as necessary.
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyun-Seop",
                    family = "Bae",
                    role = c("aut", "cre"),
                    email = "k@acr.kr")
as necessary.
Specified C++14: please drop specification unless essential
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.
Maintainer: ‘Baidya Nath Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Baidya", "Nath"),
                      family = "Mandal",
                      role = c("aut", "cre"),
                      email = "mandal.stat@gmail.com"),
               person(given = "Jun",
                      family = "Ma",
                      role = "aut",
                      email = "jun.ma@mq.edu.au"))
as necessary.
Maintainer: ‘Chiu-Hsieh Hsu <pablo1639@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Ran",
                      role = "aut"),
               person(given = "Chiu-Hsieh",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "pablo1639@gmail.com"),
               person(given = "Mandi",
                      family = "Yu",
                      role = "aut"))
as necessary.
Maintainer: ‘Elvan Ceyhan <elvanceyhan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elvan",
                    family = "Ceyhan",
                    role = c("aut", "cre"),
                    email = "elvanceyhan@gmail.com")
as necessary.
Maintainer: ‘Roger Day <day01@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Roger",
                    family = "Day",
                    role = c("aut", "cre"),
                    email = "day01@pitt.edu")
as necessary.
checkRd: (-1) ROCplots.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCplots.Rd:40: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Zhao Yang <yangz98@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhao",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yangz98@connect.hku.hk")
as necessary.
Maintainer: ‘Yang Tian <tianyang1211@126.com>’

The Description field contains
  Grover, Jure Leskovec(2016),available at <arXiv:1607.00653>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arnaud",
                      family = "Le Rouzic",
                      role = c("aut", "cre"),
                      email = "arnaud.le-rouzic@universite-paris-saclay.fr",
                      comment = c(ROR = "2007-2015")),
               person(given = c("Arne", "B."),
                      family = "Gjuvsland",
                      role = "aut",
                      comment = "2010"),
               person(given = "Olivier",
                      family = "Ariste",
                      role = "aut",
                      comment = "2010"))
as necessary.
checkRd: (-1) simulatePop.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imp_int_an.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imp_int_an.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ndmodel.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ndmodel.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ndmodel.Rd:18: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Audrey Q. Fu <audreyqyfu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Audrey", "Qiuyan"),
                      family = "Fu",
                      role = "aut"),
               person(given = "Lior",
                      family = "Pachter",
                      role = "aut"),
               person(given = c("Audrey", "Q."),
                      family = "Fu",
                      role = "cre",
                      email = "audreyqyfu@gmail.com"))
as necessary.
Maintainer: ‘Flavio Santi <flavio.santi@univr.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘noisyCE2-package.Rd’:
    https://doi.org/10.1080/10618600.2016.1278003
Maintainer: ‘Valentin Kilian <valentin.kilian@ens-rennes.fr>’

The Description field contains
  <arXiv:2402.19021>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tabea Rebafka <tabea.rebafka@sorbonne-universite.fr>’

The Description field contains
  Roquain, F. Villers (2020) <arXiv:1907.10176>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘libr_called.R’ ‘libr_unused.R’ ‘libr_used.R’
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘nomogramEx.Rd’:
    \keyword{nomogram, survival probability}
Maintainer: ‘Jing Zhang<zj391120@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jing",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zj391120@163.com"),
               person(given = "Zhi",
                      family = "Jin",
                      role = "aut"))
as necessary.
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyun-Seop",
                    family = "Bae",
                    role = c("aut", "cre"),
                    email = "k@acr.kr")
as necessary.
Maintainer: ‘Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christina",
                      family = "Heinze-Deml",
                      role = c("aut", "cre"),
                      email = "heinzedeml@stat.math.ethz.ch"),
               person(given = "Jonas",
                      family = "Peters",
                      role = "aut",
                      email = "jonas.peters@math.ku.dk"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1501.01332>, to nonlinear settings. For more details, see C.
  for Nonlinear Models', <arXiv:1706.08576>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Burak Guris <bguris@istanbul.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Burak",
                    family = "Guris",
                    role = c("aut", "cre"),
                    email = "bguris@istanbul.edu.tr")
as necessary.
Maintainer: ‘Magnus Astrand <magnus.astrand@astrazeneca.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Magnus",
                    family = "Astrand",
                    role = c("aut", "cre"),
                    email = "magnus.astrand@astrazeneca.com")
as necessary.
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Dong-hyun Oh <oh.donghyun77@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dong-hyun",
                      family = "Oh",
                      role = c("aut", "cre"),
                      email = "oh.donghyun77@gmail.com"),
               person(given = "Dukrok",
                      family = "Suh",
                      role = "aut",
                      email = "dukrok@kist.re.kr"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  lp2.Rd: lp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘D. Lukke Sweet <dlukkesweet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("D.", "Lukke"),
                    family = "Sweet",
                    role = c("aut", "cre"),
                    email = "dlukkesweet@gmail.com")
as necessary.
Maintainer: ‘Luis Castro Martín <luiscastro193@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Castro"),
                      family = "Martín",
                      role = c("aut", "cre"),
                      email = "luiscastro193@gmail.com"),
               person(given = c("Ramón", "Ferri"),
                      family = "García",
                      role = "aut",
                      email = "rferri@ugr.es"),
               person(given = c("María", "del", "Mar"),
                      family = "Rueda",
                      role = "aut",
                      email = "mrueda@ugr.es"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘valliant_weights.Rd’:
    https://doi.org/10.1093/jssam/smz003
Maintainer: ‘Brian P. O'Connor  <brian.oconnor@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Brian", "P."),
                    family = "O'Connor",
                    role = c("aut", "cre"),
                    email = "brian.oconnor@ubc.ca")
as necessary.
Maintainer: ‘Stefano M. Iacus <siacus@iq.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luigi",
                      family = "Curini",
                      role = "aut"),
               person(given = c("Stefano", "M."),
                      family = "Iacus",
                      role = c("aut", "cre"),
                      email = "siacus@iq.harvard.edu"))
as necessary.
checkRd: (-1) set.data.Rd:14: Lost braces; missing escapes or markup?
    14 |   \item{shape}{either \code{wide} or {long}. Default \code{wide}. See Details.}
       |                                      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  set.data.Rd: mlogit.data
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Angelo M. Mineo <angelo.mineo@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Angelo", "M."),
                    family = "Mineo",
                    role = c("aut", "cre"),
                    email = "angelo.mineo@unipa.it")
as necessary.
Maintainer: ‘Kevin Chang <k.chang@auckland.ac.nz>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Shan Gao <gao_shan@mail.nankai.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhenfeng",
                      family = "Wu",
                      role = "aut"),
               person(given = "Shan",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "gao_shan@mail.nankai.edu.cn"))
as necessary.
Maintainer: ‘Cecile Proust-Lima <cecile.proust-lima@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cecile",
                      family = "Proust-Lima",
                      role = c("aut", "cre"),
                      email = "cecile.proust-lima@inserm.fr"),
               person(given = "Viviane",
                      family = "Philipps",
                      role = "aut"))
as necessary.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ported", "to", "R", "by", "Alvaro", "A.", "Novo.", "Original", "by", "Joseph", "L.", "Schafer"),
                      family = "<jls@stat.psu.edu>.",
                      role = "aut",
                      email = "jls@stat.psu.edu"),
               person(given = "John",
                      family = "Fox",
                      role = "cre",
                      email = "jfox@mcmaster.ca"))
as necessary.
Maintainer: ‘Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pierre",
                      family = "Duchesne",
                      role = "aut"),
               person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = c("aut", "cre"),
                      email = "lafaye@unsw.edu.au"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  autoplot.ts.Rd: geom_forecast, fortify
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Hien D. Nguyen <h.nguyen7@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hien", "D."),
                    family = "Nguyen",
                    role = c("aut", "cre"),
                    email = "h.nguyen7@uq.edu.au")
as necessary.
Maintainer: ‘Mutua Kilai <kilaimutua@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mutua",
                      family = "Kilai",
                      role = c("aut", "cre"),
                      email = "kilaimutua@gmail.com"),
               person(given = "Gichuhi",
                      family = "Waititu",
                      role = "aut"),
               person(given = "Wanjoya",
                      family = "Kibira",
                      role = "aut"))
as necessary.
Maintainer: ‘Terry Therneau <terry.therneau@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Terry",
                    family = "Therneau",
                    role = c("aut", "cre"),
                    email = "terry.therneau@mayo.edu")
as necessary.
Maintainer: ‘Kerstin Rubarth <kerstin.rubarth@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre")),
               person(given = "Kimihiro",
                      family = "Noguchi",
                      role = "ctr"),
               person(given = "Kerstin",
                      family = "Rubarth",
                      role = "cre",
                      email = "kerstin.rubarth@charite.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Frank Konietschke <frank.konietschke@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kimihiro",
                      family = "Noguchi",
                      role = "aut",
                      email = "noguchk@wwu.edu"),
               person(given = "Mahbub",
                      family = "Latif",
                      role = "aut",
                      email = "mlatif@isrt.ac.bd"),
               person(given = "Karthinathan",
                      family = "Thangavelu",
                      role = "aut"),
               person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre"),
                      email = "frank.konietschke@charite.de"),
               person(given = c("Yulia", "R."),
                      family = "Gel",
                      role = "aut",
                      email = "yxg142030@utdallas.edu"),
               person(given = "Edgar",
                      family = "Brunner",
                      role = "aut",
                      email = "ebrunne1@gwdg.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Maximilian Kiefel <physik210@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Kiefel",
                      role = c("aut", "cre"),
                      email = "physik210@hotmail.com"),
               person(given = c("Arne", "C."),
                      family = "Bathke",
                      role = "aut"))
as necessary.
Maintainer: ‘Jingchen Hu <jingchen.monika.hu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Quanli",
                      family = "Wang",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Manrique-Vallier",
                      role = "aut"),
               person(given = c("Jerome", "P."),
                      family = "Reiter",
                      role = "aut"),
               person(given = "Jingchen",
                      family = "Hu",
                      role = c("aut", "cre"),
                      email = "jingchen.monika.hu@gmail.com"))
as necessary.
checkRd: (-1) Lcm.Rd:75: Lost braces
    75 |     \item{\code{GetTrace()}:}{retrieve all traced iterations. Returns a list with all the parameters set using the method SetTrace(). See description of snapshot{reference} method for a description of the parameters.  }
       |                                                                                                                                                                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Lcm.Rd: C++Object-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘coda’
Maintainer: ‘Thibault Laurent <thibault.laurent@univ-tlse1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abdelaati",
                      family = "Daouia",
                      role = "aut",
                      email = "Abdelaati.Daouia@tse-fr.eu"),
               person(given = "Thibault",
                      family = "Laurent",
                      role = c("aut", "cre"),
                      email = "thibault.laurent@univ-tlse1.fr"),
               person(given = "Hohsuk",
                      family = "Noh",
                      role = "aut",
                      email = "word5810@gmail.com"))
as necessary.
Maintainer: ‘Maria Alonso-Pena <maria.alonsopena@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maria",
                      family = "Alonso-Pena",
                      role = c("aut", "cre"),
                      email = "maria.alonsopena@kuleuven.be"),
               person(given = "Maria",
                      family = "Oliveira",
                      role = "aut"),
               person(given = "Jose",
                      family = "Ameijeiras-Alonso",
                      role = "aut"),
               person(given = c("Rosa", "M."),
                      family = "Crujeiras",
                      role = "aut"),
               person(given = "Irene",
                      family = "Gijbels",
                      role = "aut"),
               person(given = "Alberto",
                      family = "Rodriguez-Casal",
                      role = "aut"),
               person(given = "Felicita",
                      family = "Scapini",
                      role = "dtc"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/NPCirc.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) plot.regression.circular.Rd:35: Lost braces
    35 |               code{plot.type="circle"} and \code{x} is the output of \code{\link{kern.reg.circ.lin}}) or to \code{\link{lines3d}} (if \code{plot.type="circle"})
       |                   ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ancova.circ.lin.Rd: circular
  bw.AA.Rd: circular, density.circular
  bw.CV.Rd: circular
  bw.boot.Rd: circular
  bw.circ.local.lik.Rd: circular
  bw.pi.Rd: circular
  bw.reg.circ.lin.Rd: circular
  bw.rt.Rd: circular
  circ.local.lik.Rd: circular
  circsizer.density.Rd: circular
  circsizer.regression.Rd: circular
  dcircmix.Rd: circular
  dpreg.circ.Rd: circular
  dwsn.Rd: circular
  kern.den.circ.Rd: circular, density.circular, plot.density.circular,
    lines.density.circular
  kern.dpreg.circ.Rd: circular
  kern.reg.circ.lin.Rd: circular
  lines.regression.circular.Rd: radial.plot, lines3d
  modalreg.circ.lin.Rd: circular
  noeffect.circ.lin.Rd: circular
  plot.regression.circular.Rd: radial.plot, lines3d
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ignacio López-de-Ullibarri <ignacio.lopezdeullibarri@udc.es>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘beran.Rd’:
    https://doi.org/10.1093/biostatistics/kxx034
  File ‘berancv.Rd’:
    https://doi.org/10.1177/1471082X0700700404
    https://doi.org/10.1093/biostatistics/kxx034
  File ‘hpilot.Rd’:
    https://doi.org/10.1080/10485259308832566
    https://doi.org/10.1023/A:1014644700806
    https://doi.org/10.1016/j.csda.2016.08.002
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘latency.Rd’:
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘latencyhboot.Rd’:
    https://doi.org/10.1023/A:1014644700806
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘npcure-package.Rd’:
    https://doi.org/10.1016/j.csda.2016.08.002
    https://doi.org/10.1007/s11749-016-0515-1
  File ‘probcure.Rd’:
    https://doi.org/10.1016/j.csda.2016.08.002
    https://doi.org/10.1002/cjs.11197
  File ‘probcurehboot.Rd’:
    https://doi.org/10.1023/A:1014644700806
    https://doi.org/10.1016/j.csda.2016.08.002
  File ‘testmz.Rd’:
    https://doi.org/10.1093/biomet/79.4.731
Maintainer: ‘Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘DefVarBandRule.Rd’:
    http://dx.doi.org/10.1080/03610920802364088
  File ‘DiscHazRateAuxFunctions.Rd’:
    https://doi.org/10.1007/BF00128979
  File ‘TransHazRateEst.Rd’:
    http://dx.doi.org/10.1080/10485250802440184
  File ‘TutzPritscher.Rd’:
    https://doi.org/10.1007/BF00128979
  File ‘VarBandHazEst.Rd’:
    http://dx.doi.org/10.1080/03610920802364088
  File ‘WeibHazFunctionals.Rd’:
    http://dx.doi.org/10.1080/03610920802364088
checkRd: (-1) DiscHazRateAuxFunctions.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DiscHazRateAuxFunctions.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DiscHazRateAuxFunctions.Rd:48: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Huan Cheng <hcheng1118@hotmail.com>’

The Description field contains
  Cheng and He (2021) <arXiv:2110.03833>. The references for sample size
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Robin Ristl <robin.ristl@meduniwien.ac.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jos Feys <jos.feys@faber.kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jos",
                    family = "Feys",
                    role = c("aut", "cre"),
                    email = "jos.feys@faber.kuleuven.be")
as necessary.
Maintainer: ‘Frank Farach <frank.farach@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Daniel E. Weeks <weeks@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robert", "V"),
                      family = "Baron",
                      role = "aut",
                      email = "rvb5@pitt.edu"),
               person(given = "Nandita",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Xinyu",
                      family = "Tang",
                      role = "aut"),
               person(given = c("Daniel", "E."),
                      family = "Weeks",
                      role = c("aut", "cre"),
                      email = "weeks@pitt.edu"))
as necessary.
Maintainer: ‘Xin Tian <tianxtt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xin",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "tianxtt@gmail.com"),
               person(given = "Colin",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Chung-Hsing Chen <chchen@nhri.org.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chung-Hsing",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "chchen@nhri.org.tw"),
               person(given = "I-Shou",
                      family = "Chang",
                      role = "aut"),
               person(given = c("Chao", "A."),
                      family = "Hsiung",
                      role = "aut"))
as necessary.
Maintainer: ‘Jochen Einbeck <jochen.einbeck@durham.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jochen",
                      family = "Einbeck",
                      role = c("aut", "cre"),
                      email = "jochen.einbeck@durham.ac.uk"),
               person(given = "Ross",
                      family = "Darnell",
                      role = "aut"),
               person(given = "John",
                      family = "Hinde",
                      role = "aut"))
as necessary.
Maintainer: ‘Scott Powers <saberpowers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Scott",
                      family = "Powers",
                      role = c("aut", "cre"),
                      email = "saberpowers@gmail.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Bulent Altunkaynak <bulenta@gazi.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bulent",
                      family = "Altunkaynak",
                      role = c("aut", "cre"),
                      email = "bulenta@gazi.edu.tr"),
               person(given = "Hamza",
                      family = "Gamgam",
                      role = "aut"))
as necessary.
Maintainer: ‘David Allingham <David.Allingham@newcastle.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Allingham",
                      role = c("aut", "cre"),
                      email = "david.allingham@newcastle.edu.au"),
               person(given = "D.J.",
                      family = "Best",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) nppbib.Rd:28: Escaped LaTeX specials: \#
'::' or ':::' import not declared from: ‘crs’
'library' or 'require' call not declared from: ‘crs’
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
Maintainer: ‘Oleg Badunenko <oleg.badunenko@brunel.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oleg",
                      family = "Badunenko",
                      role = c("aut", "cre"),
                      email = "oleg.badunenko@brunel.ac.uk"),
               person(given = "Pavlo",
                      family = "Mozharovskyi",
                      role = "aut"),
               person(given = "Yaryna",
                      family = "Kolomiytseva",
                      role = "aut"))
as necessary.
Maintainer: ‘Yong Wang <yongwang@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yong",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "yongwang@auckland.ac.nz")
as necessary.
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
checkRd: (-1) np.reg.test.Rd:148: Lost braces
   148 | ter Braak, C. J. F. (1992). Permutation versus bootstrap significance tests in multiple regression and ANOVA. In K. H. J\"{o}ckel, G. Rothe, & W. Sendler (Eds.), Bootstrapping and related techniques. lecture notes in economics and mathematical systems, vol 376 (pp. 79-86). Springer.
       |                                                                                                                           ^
checkRd: (-1) nptest-package.Rd:73: Lost braces
    73 | ter Braak, C. J. F. (1992). Permutation versus bootstrap significance tests in multiple regression and ANOVA. In K. H. J\"{o}ckel, G. Rothe, & W. Sendler (Eds.), Bootstrapping and related techniques. lecture notes in economics and mathematical systems, vol 376 (pp. 79-86). Springer.
       |                                                                                                                           ^
Maintainer: ‘Gordon J. Ross <gordon.ross@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Gordon", "J."),
                    family = "Ross",
                    role = c("aut", "cre"),
                    email = "gordon.ross@ed.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Segmentation" <arxiv:2107.01742>. This uses a version of Wild Binary
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Eisuke Inoue <eisuke.inoue@marianna-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eisuke",
                    family = "Inoue",
                    role = c("aut", "cre"),
                    email = "eisuke.inoue@marianna-u.ac.jp")
as necessary.
Maintainer: ‘Benjamin Groebe <ben.groebe@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘mde.arfima.Rd’:
    https://doi.org/10.1111/j.1368-423X.2007.00202.x
  File ‘mle.arfima.Rd’:
    https://doi.org/10.1111/j.2517-6161.1995.tb02054.x
Maintainer: ‘Keven Bluteau <keven.bluteau@usherbrooke.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  nse.andrews.Rd: sandwich
  nse.boot.Rd: np
  nse.geyer.Rd: mcmc, mcmcse
  nse.hiruk.Rd: sandwich
  nse.nw.Rd: sandwich
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ming-Chang (Alan) Lee <alan9956@ydu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ching-Shih",
                      family = "Tsou",
                      role = "aut",
                      email = "cstsou@mail.ntcb.edu.tw",
                      comment = "Vince"),
               person(given = "Ming-Chang",
                      family = "Lee",
                      role = "cre",
                      email = "alan9956@ydu.edu.tw",
                      comment = "Alan"))
as necessary.
Maintainer: ‘Artem Shramko <art.shramko@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Artem",
                    family = "Shramko",
                    role = c("aut", "cre"),
                    email = "art.shramko@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘nsga3-package.Rd’:
    \keyword{algorithm,}
    \keyword{nsga3,}
    \keyword{omptimisation,}
    \keyword{optimisation,}
    \keyword{preprocessing,}
    \keyword{selection,}
    \keyword{wrapper,}
Maintainer: ‘Sonia Perez Fernandez <uo217889@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sonia", "Perez"),
                    family = "Fernandez",
                    role = c("aut", "cre"),
                    email = "uo217889@uniovi.es")
as necessary.
Maintainer: ‘Daliang Ning <ningdaliang@ou.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daliang",
                    family = "Ning",
                    role = c("aut", "cre"),
                    email = "ningdaliang@ou.edu")
as necessary.
checkRd: (-1) MSM.fit.Rd:21: Lost braces
    21 | \code{MSM.fit} returns an object of class code{MSM.lm} or \code{MSM.glm}, depending on the input model.
       |                                               ^
checkRd: (-1) SMC.Smooth.Rd:25: Lost braces; missing escapes or markup?
    25 | observation at current time step. It should return {xx} (the samples xt) and
       |                                                    ^
checkRd: (-1) SMC.Smooth.Rd:26: Lost braces; missing escapes or markup?
    26 | {logww} (their corresponding log weight).}
       | ^
Maintainer: ‘Volker Schmid <volker.schmid@lmu.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘partition.Rd’
Author field differs from that derived from Authors@R
  Author:    ‘Chris Hartgerink [rev] (<https://orcid.org/0000-0003-1050-6809>), Ulysse Boucherie [ctb] (https://www.linkedin.com/in/ulysse-boucherie-7a3b2b111/), Joshua W. Lambert [ctb] (<https://orcid.org/0000-0001-5218-3046>), Karim Mané [ctb] (<https://orcid.org/0000-0002-9892-2999>), Hugo Gruson [aut] (<https://orcid.org/0000-0002-4094-1476>), Bankole Ahadzie [aut, cre], London School of Hygiene and Tropical Medicine, LSHTM [cph] (00a0jsq62)’
  Authors@R: ‘Chris Hartgerink [rev] (ORCID: <https://orcid.org/0000-0003-1050-6809>), Ulysse Boucherie [ctb] (https://www.linkedin.com/in/ulysse-boucherie-7a3b2b111/), Joshua W. Lambert [ctb] (ORCID: <https://orcid.org/0000-0001-5218-3046>), Karim Mané [ctb] (ORCID: <https://orcid.org/0000-0002-9892-2999>), Hugo Gruson [aut] (ORCID: <https://orcid.org/0000-0002-4094-1476>), Bankole Ahadzie [aut, cre], London School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR: <https://ror.org/00a0jsq62>)’
Maintainer: ‘Maarten Kruijver <maarten.kruijver@esr.cri.nz>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Hans W. Borchers <hwborchers@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hans", "Werner"),
                      family = "Borchers",
                      role = "aut"),
               person(given = c("Hans", "W."),
                      family = "Borchers",
                      role = "cre",
                      email = "hwborchers@googlemail.com"))
as necessary.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Gilbert",
                      role = c("aut", "cre"),
                      email = "pgilbert.ttv9z@ncf.ca"),
               person(given = "Ravi",
                      family = "Varadhan",
                      role = "aut"))
as necessary.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Pariya Behrouzi <pariya.behrouzi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pariya",
                    family = "Behrouzi",
                    role = c("aut", "cre"),
                    email = "https://orcid.org/0000-0001-6762-5433")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.select.Rd: select
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Moritz Hennicke <AAoritz@posteo.de>’

The BugReports field in DESCRIPTION has
  https://github.com/ropensci/nuts
which should likely be
  https://github.com/ropensci/nuts/issues
instead.
checkRd: (-1) xyz2R.Rd:31: Lost braces
    31 |    \item Finally, code{T} is rotated an angle \code{z} about its NEWEST z-axis.
       |                       ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘README.Rmd’ using rmarkdown

Quitting from README.Rmd:90-109 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'README.Rmd' failed with diagnostics:
Problem while setting up geom aesthetics.
ℹ Error occurred in the 2nd layer.
Caused by error in `check_aesthetics()`:
! Aesthetics must be either length 1 or the same as the data (3104).
✖ Fix the following mappings: `group`.
--- failed re-building ‘README.Rmd’

SUMMARY: processing the following file failed:
  ‘README.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Finnbar Lee <lee.finnbar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘o2plsda-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.o2plsda
> ### Title: Score, VIP or loading plot for the O2PLS results
> ### Aliases: plot.o2plsda
> 
> ### ** Examples
> 
> X <- matrix(rnorm(50),10,5)
> Y <- matrix(rnorm(50),10,5)
> fit <- o2pls(X,Y,2,1,1)
> yy <- rep(c(0,1),5)
> fit0 <- oplsda(fit,yy,2)
> plot(fit0, type="score", group = factor(yy))
Error in `stat_ellipse()`:
! Problem while computing stat.
ℹ Error occurred in the 3rd layer.
Caused by error in `setup_params()`:
! The package "MASS" is required for calculating ellipses with `type =
  "t"`.
Backtrace:
     ▆
  1. ├─base (local) `<fn>`(x)
  2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)
  3. │ ├─ggplot2::ggplot_build(x)
  4. │ └─ggplot2 (local) `ggplot_build.ggplot2::ggplot`(x)
  5. │   └─ggplot2:::by_layer(...)
  6. │     ├─rlang::try_fetch(...)
  7. │     │ ├─base::tryCatch(...)
  8. │     │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9. │     │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 10. │     │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 11. │     │ └─base::withCallingHandlers(...)
 12. │     └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 13. │       └─l$compute_statistic(d, layout)
 14. │         └─ggplot2 (local) compute_statistic(..., self = self)
 15. │           └─self$stat$setup_params(data, self$stat_params)
 16. │             └─ggplot2 (local) setup_params(...)
 17. │               └─rlang::check_installed("MASS", "for calculating ellipses with `type = \"t\"`.")
 18. │                 └─base::stop(cnd)
 19. └─rlang (local) `<fn>`(`<rlb_r___>`)
 20.   └─handlers[[1L]](cnd)
 21.     └─cli::cli_abort(...)
 22.       └─rlang::abort(...)
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘o2plsda.Rmd’ using knitr

Quitting from o2plsda.Rmd:91-96 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'o2plsda.Rmd' failed with diagnostics:
Problem while computing stat.
ℹ Error occurred in the 3rd layer.
Caused by error in `setup_params()`:
! The package "MASS" is required for calculating ellipses with `type =
  "t"`.
--- failed re-building ‘o2plsda.Rmd’

SUMMARY: processing the following file failed:
  ‘o2plsda.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Jason Waddell <jason.waddell@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jason",
                    family = "Waddell",
                    role = c("aut", "cre"),
                    email = "jason.waddell@openanalytics.eu")
as necessary.
Maintainer: ‘Jason Waddell <jason.waddell@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jason",
                      family = "Waddell",
                      role = c("aut", "cre"),
                      email = "jason.waddell@openanalytics.eu"),
               person(given = "Willem",
                      family = "Ligtenberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Rougier",
                      role = "aut",
                      email = "j.c.rougier@bristol.ac.uk"),
               person(given = c("Robin", "K.", "S."),
                      family = "Hankin",
                      role = "cre",
                      email = "hankin.robin@gmail.com"))
as necessary.
Maintainer: ‘Marek Hlavac <mhlavac@alumni.princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "mhlavac@alumni.princeton.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philip Stubbings <phil@parasec.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philip",
                    family = "Stubbings",
                    role = c("aut", "cre"),
                    email = "phil@parasec.net")
as necessary.
Maintainer: ‘Alejandro Ordonez <ordonezjosealejandro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Ordonez",
                      role = c("aut", "cre"),
                      email = "ordonezjosealejandro@gmail.com"),
               person(given = c("Marcos", "O."),
                      family = "Prates",
                      role = "aut"),
               person(given = c("Larissa", "A."),
                      family = "Matos",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos.",
                      role = "aut"))
as necessary.

The Description field contains
  Details can be found in Ordonez et al. (2020) <arXiv:2004.04341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Tengfei",
                      family = "Yin",
                      role = "aut"))
as necessary.
Maintainer: ‘John Snyder <jcs8v6@mail.missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Zheng",
                      role = "aut"),
               person(given = "John",
                      family = "Snyder",
                      role = "cre",
                      email = "jcs8v6@mail.missouri.edu"))
as necessary.
checkRd: (-1) OBMb.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) OBMb.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Paul R. Hibbing <paulhibbing@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Greg Snow <538280@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Snow",
                    role = c("aut", "cre"),
                    email = "538280@gmail.com")
as necessary.
Maintainer: ‘Yudong Chen <yudong.chen@statslab.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yudong",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "yudong.chen@statslab.cam.ac.uk"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  <arxiv:2003.03668> for online detection of sudden mean changes in a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ChangepointDetector.Rd:93: Lost braces; missing escapes or markup?
    93 | \code{'sparse'}, then only (S^{diag}, S^{off,d})
       |                               ^
checkRd: (-1) ChangepointDetector.Rd:93: Lost braces; missing escapes or markup?
    93 | \code{'sparse'}, then only (S^{diag}, S^{off,d})
       |                                         ^
checkRd: (-1) ChangepointDetector.Rd:94: Lost braces; missing escapes or markup?
    94 | and (S^{diag}, S^{off,s}) are included in \code{stat} respectively.);
       |        ^
checkRd: (-1) ChangepointDetector.Rd:94: Lost braces; missing escapes or markup?
    94 | and (S^{diag}, S^{off,s}) are included in \code{stat} respectively.);
       |                  ^
Maintainer: ‘Luke Miller <contact@lukemiller.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andrea Pagotto <ajpagotto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Pagotto",
                    role = c("aut", "cre"),
                    email = "ajpagotto@gmail.com")
as necessary.

The Description field contains
  and MacKay (2007) <arXiv:0710.3742> for univariate or multivariate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) onlineCPD.Rd:35: Lost braces
    35 |  function(x, lambda){const_hazard(x, lambda=100)}
       |                     ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘duckdb_connection.R’ ‘get_database_functions.R’ ‘mysql_connection.R’
    ‘postgres_connection.R’ ‘snowflake_connection.R’
    ‘sqlite_connection.R’ ‘submit_query.R’ ‘vertica_connection.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘octopus_api.R’
Maintainer: ‘Sevvandi Kandanaarachchi <sevvandik@gmail.com>’

The Description field contains
  anomalies (Kandanaarachchi, Hyndman 2022) <arXiv:2210.07407>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marco Blume <marco.blume@pinnaclesports.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Blume",
                      role = c("aut", "cre"),
                      email = "marco.blume@pinnaclesports.com"),
               person(given = "Sascha",
                      family = "Thomsen",
                      role = "aut"))
as necessary.
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Muntashir-Al-Arefin <muntashir.a2i@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "Muntashir-Al-Arefin",
                    role = c("aut", "cre"),
                    email = "muntashir.a2i@gmail.com")
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Maintainer: ‘Jiebiao Wang <randel.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiebiao",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "randel.wang@gmail.com"),
               person(given = "Qianying",
                      family = "Liu",
                      role = "aut"),
               person(given = c("Lin", "S."),
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘Hai-Tang Chiou <htchiou1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hai-Tang",
                      family = "Chiou",
                      role = c("aut", "cre"),
                      email = "htchiou1@gmail.com"),
               person(given = "Ching-Kang",
                      family = "Ing",
                      role = "aut"),
               person(given = c("Tze", "Leung"),
                      family = "Lai",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘set_parameters.Rd’
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘01-opIndicators.R’
Maintainer: ‘Matheus H. J. Saldanha <mhjsaldanha@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/matheushjs/ollggamma
which should likely be
  https://github.com/matheushjs/ollggamma/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘OLStraj.R’ ‘cbc_lm.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app_server.R’
Maintainer: ‘Yujiao Mai <yujiaomai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yujiao",
                      family = "Mai",
                      role = c("cre", "aut"),
                      email = "yujiaomai@gmail.com"),
               person(given = c("Deo", "Kumar"),
                      family = "Srivastava",
                      role = "aut"),
               person(given = c("Kevin", "R."),
                      family = "Krull",
                      role = "aut"))
as necessary.
Maintainer: ‘Hae Kyung Im <haky@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hae", "Kyung"),
                      family = "Im",
                      role = c("aut", "cre"),
                      email = "haky@uchicago.edu"),
               person(given = c("Heather", "E."),
                      family = "Wheeler",
                      role = "aut"),
               person(given = c("Keston", "Aquino"),
                      family = "Michaels",
                      role = "aut"),
               person(given = "Vassily",
                      family = "Trubetskoy",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘krigr_cross_validation.Rd’:
    \keyword{prediction,}
  File ‘make_PCs_irlba.Rd’:
    \keyword{PCA,}
    \keyword{covariate,}
  File ‘make_PCs_svd.Rd’:
    \keyword{PCA,}
    \keyword{covariate,}
Maintainer: ‘Fumihiko Takeuchi <fumihiko@takeuchi.name>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ctassoc.Rd’:
    https://doi.org/10.1080/03610927608827353
Maintainer: ‘Patrick O'Keefe <okeefep@ohsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patrick",
                    family = "O'Keefe",
                    role = c("aut", "cre"),
                    email = "okeefep@ohsu.edu")
as necessary.
Maintainer: ‘Qi Yan <qiy17@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qi",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "qiy17@pitt.edu")
as necessary.
checkRd: (-1) dot-discoveryRequest.Rd:15-16: Lost braces
    15 | \item{service}{One of {"locations", "deployments", "deviceCategories", "devices",
       |                       ^
checkRd: (-1) dot-discoveryRequest.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{method}{One of {"get", "getTree"}}
       |                      ^
checkRd: (-1) dot-saveAsFile.Rd:19: Lost braces; missing escapes or markup?
    19 | (numeric) Result code from {0: done, -1: error, -2: fileExists}
       |                            ^
Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.
Maintainer: ‘Aniko Szabo <aszabo@mcw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aniko",
                      family = "Szabo",
                      role = c("aut", "cre"),
                      email = "aszabo@mcw.edu"),
               person(given = "Lisa",
                      family = "Pappas",
                      role = "aut"))
as necessary.
checkRd: (-1) oncotree.fit.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) oncotree.fit.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘global.R’
Maintainer: ‘Eric E. Graves <gravcon5@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Eric", "E."),
                    family = "Graves",
                    role = c("aut", "cre"),
                    email = "gravcon5@gmail.com")
as necessary.
Maintainer: ‘Holger von Jouanne-Diedrich <holger.jouanne-diedrich@h-ab.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "von Jouanne-Diedrich",
                    role = c("aut", "cre"),
                    email = "holger.jouanne-diedrich@h-ab.de")
as necessary.
Maintainer: ‘Jun Li <jli49@kent.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lingjun",
                      family = "Li",
                      role = "aut"),
               person(given = "Jun",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "jli49@kent.edu"))
as necessary.

The Description field contains
  <arXiv:1911.07762>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Degras <ddegrasv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Degras",
                      role = c("aut", "cre"),
                      email = "ddegrasv@gmail.com"),
               person(given = "Herve",
                      family = "Cardot",
                      role = "ctb"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tab_onsv.R’ ‘tab_onsv.Rd’
Maintainer: ‘Sergei Tarasov <sergei.tarasov@helsinki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergei",
                    family = "Tarasov",
                    role = c("aut", "cre"),
                    email = "sergei.tarasov@helsinki.fi")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘1onto.R’ ‘edit_matches.R’
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>’

The BugReports field in DESCRIPTION has
  https://github.com/sthawinke/oosse
which should likely be
  https://github.com/sthawinke/oosse/issues
instead.
Maintainer: ‘Philipp Külpmann <philipp@kuelpmann.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorn",
                      family = "Lotsch",
                      role = c("aut", "cre"),
                      email = "j.lotsch@em.uni-frankfurt.de",
                      comment = c(ORCID = "0000-0002-5818-6958")),
               person(given = "Sebastian",
                      family = "Malkusch",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-6766-140X")),
               person(given = "Alfred",
                      family = "Ultsch",
                      role = "aut",
                      comment = c(ORCID = "0000-0002-7845-3283")))
as necessary.
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Petr",
                      family = "Simecek",
                      role = "aut",
                      email = "simecek@gmail.com"),
               person(given = "Juergen",
                      family = "Pilz",
                      role = "aut",
                      email = "juergen.pilz@aau.at"),
               person(given = "Mingui",
                      family = "Wang",
                      role = "aut",
                      email = "mail.mwang@gmail.com"),
               person(given = "Albrecht",
                      family = "Gebhardt.",
                      role = "aut",
                      email = "albrecht.gebhardt@aau.at"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Aaron",
                      family = "Puchert",
                      role = "aut",
                      email = "aaronpuchert@alice-dsl.net"))
as necessary.
License stub is invalid DCF.
File ‘OpenCL/libs/R_OpenCL.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Running ‘buffer.R’ [0s/1s]
  Comparing ‘buffer.Rout’ to ‘buffer.Rout.save’ ...5,10d4
< > 
< > if (!length(oclPlatforms())) {
< +     cat("== Cannot run tests as there is no platform")
< +     q("no")
< + }
< > 
  Running ‘kernel.R’ [2s/3s]
  Comparing ‘kernel.Rout’ to ‘kernel.Rout.save’ ...5,10d4
< > 
< > if (!length(oclPlatforms())) {
< +     cat("== Cannot run tests as there is no platform")
< +     q("no")
< + }
< >
Maintainer: ‘Kari Gunnarsson <kari.gunnarsson@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kari",
                    family = "Gunnarsson",
                    role = c("aut", "cre"),
                    email = "kari.gunnarsson@outlook.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘format_search_term.R’ ‘openFDA.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acs12.Rd’ ‘arbuthnot.Rd’ ‘ask.Rd’ ‘biontech_adolescents.Rd’
    ‘birds.Rd’ ‘blizzard_salary.Rd’ ‘census.Rd’ ‘cia_factbook.Rd’
    ‘climber_drugs.Rd’ ‘comics.Rd’ ‘daycare_fines.Rd’ ‘dotPlot.Rd’
    ‘drone_blades.Rd’ ‘epa2021.Rd’ ‘exam_grades.Rd’ ‘fact_opinion.Rd’
    ‘family_college.Rd’ ‘fish_age.Rd’ ‘friday.Rd’ ‘gdp_countries.Rd’
    ‘gss_wordsum_class.Rd’ ‘house.Rd’ ‘iowa.Rd’ ‘ipo.Rd’ ‘iran.Rd’
    ‘labor_market_discriminiation.Rd’ ‘lecture_learning.Rd’
    ‘lego_population.Rd’ ‘lego_sample.Rd’ ‘lizard_run.Rd’
    ‘london_boroughs.Rd’ ‘london_murders.Rd’ ‘malaria.Rd’ ‘mariokart.Rd’
    ‘mlb_teams.Rd’ ‘mlbbat10.Rd’ ‘mn_police_use_of_force.Rd’
    ‘nba_finals.Rd’ ‘nba_finals_teams.Rd’ ‘nycflights.Rd’ ‘orings.Rd’
    ‘oscars.Rd’ ‘paralympic_1500.Rd’ ‘piracy.Rd’ ‘race_justice.Rd’
    ‘simpsons_paradox_covid.Rd’ ‘soda.Rd’ ‘sowc_child_mortality.Rd’
    ‘sowc_demographics.Rd’ ‘sowc_maternal_newborn.Rd’ ‘ssd_speed.Rd’
    ‘twins.Rd’ ‘ucla_textbooks_f18.Rd’ ‘us_temperature.Rd’ ‘usb_admit.Rd’
    ‘world_pop.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’ ‘weather_now.R’
Maintainer: ‘Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuseppe",
                      family = "Casalicchio",
                      role = c("aut", "cre"),
                      email = "giuseppe.casalicchio@stat.uni-muenchen.de"),
               person(given = "Bernd",
                      family = "Bischl",
                      role = "aut",
                      email = "bernd_bischl@gmx.net"),
               person(given = "Dominik",
                      family = "Kirchhoff",
                      role = "aut",
                      email = "dom.kirchhoff@gmail.com"),
               person(given = "Michel",
                      family = "Lang",
                      role = "aut",
                      email = "michellang@gmail.com"),
               person(given = "Benjamin",
                      family = "Hofner",
                      role = "aut",
                      email = "benjamin.hofner@fau.de"),
               person(given = "Jakob",
                      family = "Bossek",
                      role = "aut",
                      email = "j.bossek@gmail.com"),
               person(given = "Pascal",
                      family = "Kerschke",
                      role = "aut",
                      email = "kerschke@uni-muenster.de"),
               person(given = "Joaquin",
                      family = "Vanschoren",
                      role = "aut",
                      email = "joaquin.vanschoren@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Unknown package ‘umx’ in Rd xrefs
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘OpenRange_api_load_species.Rd’ ‘OpenRange_api_species.Rd’
    ‘OpenRange_load_species.Rd’ ‘OpenRange_sf.R’ ‘OpenRange_species.Rd’
Author field differs from that derived from Authors@R
  Author:    ‘Jakub Jędrusiak [aut, cre, cph] (<https://orcid.org/0000-0002-6481-8210>, University of Wroclaw), Peter Organisciak [ctb] (<https://orcid.org/0000-0002-9058-2280>, University of Denver), Selcuk Acar [ctb] (<https://orcid.org/0000-0003-4044-985X>, University of North Texas), Denis Dumas [ctb] (<https://orcid.org/0000-0002-8446-4720>, University of Georgia), Pier-Luc de Chantal [ctb] (<https://orcid.org/0000-0002-6974-6172>, Université du Québec à Montréal), Kelly Berthiaume [ctb] (<https://orcid.org/0000-0002-5285-0512>, University of North Texas)’
  Authors@R: ‘Jakub Jędrusiak [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-6481-8210>, affiliation: University of Wroclaw), Peter Organisciak [ctb] (ORCID: <https://orcid.org/0000-0002-9058-2280>, affiliation: University of Denver), Selcuk Acar [ctb] (ORCID: <https://orcid.org/0000-0003-4044-985X>, affiliation: University of North Texas), Denis Dumas [ctb] (ORCID: <https://orcid.org/0000-0002-8446-4720>, affiliation: University of Georgia), Pier-Luc de Chantal [ctb] (ORCID: <https://orcid.org/0000-0002-6974-6172>, affiliation: Université du Québec à Montréal), Kelly Berthiaume [ctb] (ORCID: <https://orcid.org/0000-0002-5285-0512>, affiliation: University of North Texas)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘oscai.R’
Maintainer: ‘Win Cowger <wincowger@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#Open-Specy_community:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Ian Fellows <ian@fellstat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ian",
                      family = "Fellows",
                      role = c("aut", "cre"),
                      email = "ian@fellstat.com"),
               person(given = c("using", "the", "JMapViewer", "library", "by", "Jan", "Peter"),
                      family = "Stotz",
                      role = "aut"))
as necessary.
Maintainer: ‘Romain Francois <romain@r-enthusiasts.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Romain",
                    family = "Francois",
                    role = c("aut", "cre"),
                    email = "romain@r-enthusiasts.com")
as necessary.
Maintainer: ‘Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorn",
                      family = "Lotsch",
                      role = c("aut", "cre"),
                      email = "j.lotsch@em.uni-frankfurt.de",
                      comment = c(ORCID = "0000-0002-5818-6958")),
               person(given = "Sebastian",
                      family = "Malkusch",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-6766-140X")),
               person(given = "Martin",
                      family = "Maechler",
                      role = "ctb"),
               person(given = "Peter",
                      family = "Rousseeuw",
                      role = "ctb"),
               person(given = "Anja",
                      family = "Struyf",
                      role = "ctb"),
               person(given = "Mia",
                      family = "Hubert",
                      role = "ctb"),
               person(given = "Kurt",
                      family = "Hornik",
                      role = "ctb"))
as necessary.
Maintainer: ‘Monsuru Adepeju <monsuur2010@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Monsuru",
                      family = "Adepeju,",
                      role = c("cre", "aut")),
               person(given = "Monsuru",
                      family = "Adepeju",
                      role = "cre",
                      email = "monsuur2010@yahoo.com"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/MAnalytics/opitools/issues/1
which should likely be
  https://github.com/MAnalytics/opitools/issues/1/issues
instead.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) word_imp.Rd:14: Lost braces
    14 | number of individual records. An \code{n} x code{2} dataframe can
       |                                                 ^
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Jonathan", "M."),
                      family = "Olate",
                      role = "aut"))
as necessary.
checkRd: (-1) MonteCarlo.Rd:23: Lost braces
    23 | N is computed from \code{p} length. M is code{10^4} by default.
       |                                              ^
Maintainer: ‘Seung Won Hyun <yellowatom09@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seung", "Won"),
                      family = "Hyun",
                      role = c("aut", "cre"),
                      email = "yellowatom09@gmail.com"),
               person(given = c("Weng", "Kee"),
                      family = "Wong",
                      role = "aut"),
               person(given = "Yarong",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Mizanur Khondoker <mizanur.khondoker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mizanur",
                    family = "Khondoker",
                    role = c("aut", "cre"),
                    email = "mizanur.khondoker@gmail.com")
as necessary.
Maintainer: ‘Bruno Remillard <bruno.remillard@hec.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruno",
                    family = "Remillard",
                    role = c("aut", "cre"),
                    email = "bruno.remillard@hec.ca")
as necessary.
Malformed Title field: should not end in a period.
checkRd: (-1) drawdesign.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drawdesign.Rd:44: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Nicholas Hamilton <n.hamilton@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Hamilton",
                    role = c("aut", "cre"),
                    email = "n.hamilton@unsw.edu.au")
as necessary.
checkRd: (-1) gnu_style.Rd:24: Lost braces
    24 | [GNU Command Line Standards]{http://www.gnu.org/prep/standards/standards.html}
       |                             ^
Maintainer: ‘Monica Lopez Raton <monica.lopez.raton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Monica",
                      family = "Lopez-Raton",
                      role = "aut"),
               person(given = c("Maria", "Xose"),
                      family = "Rodriguez-Alvarez",
                      role = "aut"),
               person(given = c("Monica", "Lopez"),
                      family = "Raton",
                      role = "cre",
                      email = "monica.lopez.raton@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Michael",
                      family = "Sklar",
                      role = "aut"),
               person(given = c("Abba", "M."),
                      family = "Krieger",
                      role = "aut"),
               person(given = "David",
                      family = "Azriel",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  M. Krieger, Michael Sklar and David Azriel (2020) <arXiv:1905.03337>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiao Lin <xlin3@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiao",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "xlin3@mdanderson.org"),
               person(given = "Xuelin",
                      family = "Huang",
                      role = "aut",
                      email = "xlhuang@mdanderson.org"))
as necessary.
Maintainer: ‘Enrique del Castillo <exd13@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Enrique", "del"),
                      family = "Castillo",
                      role = c("aut", "cre"),
                      email = "exd13@psu.edu"),
               person(given = "Peng",
                      family = "Chen",
                      role = "aut"),
               person(given = "Adam",
                      family = "Meyers",
                      role = "aut"),
               person(given = "John",
                      family = "Hunt",
                      role = "aut"),
               person(given = "James",
                      family = "Rapkin",
                      role = "aut"))
as necessary.
Maintainer: ‘Vithor Rosa Franco <vithorfranco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vithor", "Rosa"),
                    family = "Franco",
                    role = c("aut", "cre"),
                    email = "vithorfranco@gmail.com")
as necessary.

The Description field contains
  Ruder (2016) <arXiv:1609.04747v2>. Currently, the Steepest 2-Groups
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kai Husmann <kai.husmann@uni-goettingen.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Florian Gerber <flora.fauna.gerber@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Edgar Bueno <edgar.bueno@stat.su.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edgar",
                    family = "Bueno",
                    role = c("aut", "cre"),
                    email = "edgar.bueno@stat.su.se")
as necessary.
Maintainer: ‘Mitchell Lyons <mitchell.lyons@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘find_optimal.Rd’:
    \keyword{optimal,}
    \keyword{partition,}
  File ‘get_characteristic.Rd’:
    \keyword{characteristic,}
    \keyword{diagnostic,}
  File ‘merge_clusters.Rd’:
    \keyword{iterative,}
    \keyword{merging,}
    \keyword{reallocation,}
Maintainer: ‘Antoine Champion <antoine.champion@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Antoine",
                    family = "Champion",
                    role = c("aut", "cre"),
                    email = "antoine.champion@outlook.com")
as necessary.
Maintainer: ‘Doug Kelkhoff <doug.kelkhoff@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://matrix.to/#/#r-pkg-options:matrix.org
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘John T. Buynak <jbuynak94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "T."),
                    family = "Buynak",
                    role = c("aut", "cre"),
                    email = "jbuynak94@gmail.com")
as necessary.
Maintainer: ‘Robin Wellmann <r.wellmann@uni-hohenheim.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robin",
                    family = "Wellmann",
                    role = c("aut", "cre"),
                    email = "r.wellmann@uni-hohenheim.de")
as necessary.
Maintainer: ‘Prakash <prakash2@uwalumni.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "Prakash",
                    role = c("aut", "cre"),
                    email = "prakash2@uwalumni.com",
                    comment = "PKS Prakash")
as necessary.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "H."),
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jaekim8080@gmail.com")
as necessary.
Maintainer: ‘Gero Szepannek <gero.szepannek@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gero",
                    family = "Szepannek",
                    role = c("aut", "cre"),
                    email = "gero.szepannek@web.de")
as necessary.
Maintainer: ‘Rudradev Sengupta <rudradev.sengupta@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adetayo",
                      family = "Kasim",
                      role = "aut"),
               person(given = "Martin",
                      family = "Otava",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Verbeke",
                      role = "aut"),
               person(given = "Rudradev",
                      family = "Sengupta",
                      role = "cre",
                      email = "rudradev.sengupta@uhasselt.be"))
as necessary.
Maintainer: ‘Emily V. Dressler <EmilyVDressler@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emily", "V."),
                      family = "Dressler",
                      role = c("aut", "cre"),
                      email = "emilyvdressler@gmail.com"),
               person(given = c("PhD", "Zhengyan"),
                      family = "Huang",
                      role = "aut"))
as necessary.
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "Alberto", "Cardozo"),
                    family = "Delgado",
                    role = c("aut", "cre"),
                    email = "cardozorpackages@gmail.com")
as necessary.
Maintainer: ‘Christian Sims <christian_j_sims@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Sims",
                    role = c("aut", "cre"),
                    email = "christian_j_sims@yahoo.com")
as necessary.
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kaspar",
                    family = "Rufibach",
                    role = c("aut", "cre"),
                    email = "kaspar.rufibach@gmail.com")
as necessary.
checkRd: (-1) internal.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:29-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:40-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:56-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:59-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:62-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) internal.Rd:70: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Philippe Lambert <p.lambert@uliege.be>’

The Description field contains
  <doi:10.1177/1471082X231181173> ; Preprint: <arXiv:2210.01668>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘James A. Fordyce <jfordyce@utk.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Fordyce",
                      role = "aut"),
               person(given = c("James", "A."),
                      family = "Fordyce",
                      role = "cre",
                      email = "jfordyce@utk.edu"))
as necessary.
Maintainer: ‘Marco Corneli <marcogenni@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Corneli",
                      role = c("aut", "cre"),
                      email = "marcogenni@gmail.com"),
               person(given = "Charles",
                      family = "Bouveyron",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"))
as necessary.
Maintainer: ‘Ken Ryan <kjryan@mail.wvu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ken",
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "kjryan@mail.wvu.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kaspar Rufibach <kaspar.rufibach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fadoua",
                      family = "Balabdaoui",
                      role = "aut"),
               person(given = "Kaspar",
                      family = "Rufibach",
                      role = c("aut", "cre"),
                      email = "kaspar.rufibach@gmail.com"),
               person(given = "Filippo",
                      family = "Santambrogio",
                      role = "aut"))
as necessary.
checkRd: (-1) minK.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) minK.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) minK.Rd:15: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anup",
                      family = "Amatya",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ordAOV.Rd: LRTSim, RLRTSim, RLRsim, exactLRT, exactRLRT
  ordGene.Rd: LRTSim, RLRTSim
  ordSmooth.Rd: gam, mgcv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Gabriel Okasa <okasa.gabriel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabriel",
                      family = "Okasa",
                      role = c("aut", "cre"),
                      email = "okasa.gabriel@gmail.com"),
               person(given = "Michael",
                      family = "Lechner",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Lechner & Okasa (2019) <arXiv:1907.02436>. The Ordered Forest flexibly
  2017) <arXiv:1508.04409>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) orf.Rd:74: Lost braces
    74 | matrix of covariates \code{X} and a vector of outcomes 'code{Y} to the \code{orf}
       |                                                             ^
Maintainer: ‘Yi Tang <yi.tang.uk@me.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yi",
                    family = "Tang",
                    role = c("aut", "cre"),
                    email = "yi.tang.uk@me.com")
as necessary.
Maintainer: ‘Tianqing Liu <tianqingliu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tianqing",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "tianqingliu@gmail.com"),
               person(given = "Nan",
                      family = "Lin",
                      role = "aut"),
               person(given = "Ningzhong",
                      family = "Shi",
                      role = "aut"),
               person(given = "Baoxue",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘cluster of fitted mean data.eps’ ‘cluster of fitted mean data.txt’
  ‘cluster of raw data.txt’
Maintainer: ‘Duncan Murdoch <murdoch.duncan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Duncan",
                    family = "Murdoch",
                    role = c("aut", "cre"),
                    email = "murdoch.duncan@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Manuel Munoz-Marquez <manuel.munoz@uca.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manuel",
                    family = "Munoz-Marquez",
                    role = c("aut", "cre"),
                    email = "manuel.munoz@uca.es")
as necessary.
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brandon",
                    family = "Whitcher",
                    role = c("aut", "cre"),
                    email = "bwhitcher@gmail.com")
as necessary.
checkRd: (-1) hillEquation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:30-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hillEquation.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:81-83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:84-85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:86-87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:88-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qiba.Rd:91-93: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhu Wang <zwang145@uthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhu",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "https://orcid.org/0000-0002-0773-0052")
as necessary.
Maintainer: ‘Andrew Redd <andrew.redd@hsc.utah.edu>’

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  Authors@R: person(given = "Andrew",
                    family = "Redd",
                    role = c("aut", "cre"),
                    email = "andrew.redd@hsc.utah.edu")
as necessary.
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

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  Authors@R: person(given = "Frederick",
                    family = "Novomestky",
                    role = c("aut", "cre"),
                    email = "fnovomes@poly.edu")
as necessary.
checkRd: (-1) polynomial.derivatives.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.derivatives.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.derivatives.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polynomial.integrals.Rd:21: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fitS4.R’ ‘helpers.R’
checkRd: (-1) oscar.Rd:44: Lost braces; missing escapes or markup?
    44 | \item{print}{Level of verbosity in Fortran (may not be visible on all terminals); should be an integer between {range, range}, Default: 3}
       |                                                                                                                ^
checkRd: (-1) oscar.control.Rd:41: Lost braces; missing escapes or markup?
    41 | \item{start}{Starting point generation method, see vignettes for details; should be an integer between {range,range}, Default: 2}
       |                                                                                                        ^
Maintainer: ‘Steffen Kriewald <kriewald@pik-potsdam.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Steffen",
                      family = "Kriewald",
                      role = c("aut", "cre"),
                      email = "kriewald@pik-potsdam.de"),
               person(given = "Till",
                      family = "Fluschnik",
                      role = "aut"),
               person(given = "Dominik",
                      family = "Reusser",
                      role = "aut"),
               person(given = "Diego",
                      family = "Rybski",
                      role = "aut"))
as necessary.
Maintainer: ‘Olga Savchuk <olga.y.savchuk@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Olga",
                    family = "Savchuk",
                    role = c("aut", "cre"),
                    email = "olga.y.savchuk@gmail.com")
as necessary.

The Description field contains
  functions, <arXiv:1703.05157>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sebastien Haneuse <shaneuse@hsph.harvard.edu>’

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  Authors@R: c(person(given = "Sebastien",
                      family = "Haneuse",
                      role = c("aut", "cre"),
                      email = "shaneuse@hsph.harvard.edu"),
               person(given = "Takumi",
                      family = "Saegusa",
                      role = "aut"),
               person(given = "Nilanjan",
                      family = "Chaterjee",
                      role = "aut"),
               person(given = "Norman",
                      family = "Breslow",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
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  Authors@R: person(given = "Xavier",
                    family = "Domingo-Almenara",
                    role = c("aut", "cre"),
                    email = "xavier.domingo@urv.cat")
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Package CITATION file contains call(s) to old-style citEntry().  Please
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Found the following (possibly) invalid file URI:
  URI: ./Introduction.html
    From: inst/doc/nse-fun.html
Running examples in ‘OSMscale-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: earthDist
> ### Title: distance between lat-long coordinates
> ### Aliases: earthDist
> ### Keywords: spatial
> 
> ### ** Examples
> 
> d <- read.table(header=TRUE, sep=",", text="
+ lat, long
+ 52.514687,  13.350012   # Berlin
+ 51.503162,  -0.131082   # London
+ 35.685024, 139.753365") # Tokio
> earthDist(lat, long, d)      # from Berlin to L and T: 928 and 8922 km
[1]    0.0000  928.1557 8922.2195
> earthDist(lat, long, d, i=2) # from London to B and T: 928 and 9562 km
[1]  928.1557    0.0000 9561.9303
> 
> # slightly different with other formulas:
> # install.packages("geosphere")
> # geosphere::distHaversine(as.matrix(d[1,2:1]), as.matrix(d[2,2:1])) / 1000
> 
> # Distance along vector of points:
> d <- data.frame(lat=21:50, long=1:30)
> pointsMap(lat,long,d, zoom=2, proj=putm(1:30) )
Downloading map with extend -0.45, 31.45, 19.55, 51.45 ...
Could not open Bing aerials attribution metadata.
java.lang.NullPointerException: Cannot invoke "java.awt.image.BufferedImage.getRGB(int, int, int, int, int[], int, int)" because the return value of "org.openstreetmap.gui.jmapviewer.Tile.getImage()" is null
	at edu.cens.spatial.RTileController.getTileValues(RTileController.java:109)
	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
	at java.base/java.lang.reflect.Method.invoke(Method.java:580)
	at RJavaTools.invokeMethod(RJavaTools.java:399)
Error in osmtile(x%%nX, y, zoom, type) : could not obtain tile: 1 1 2
Calls: pointsMap -> <Anonymous> -> osmtile
Execution halted
Maintainer: ‘Xiaoyao Yin <yinxy1992@sina.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Xiaoyao",
                    family = "Yin",
                    role = c("aut", "cre"),
                    email = "yinxy1992@sina.com")
as necessary.
Maintainer: ‘Adrian Staempfli <adrian.staempfli@ost.ch>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Adrian",
                      family = "Staempfli",
                      role = c("aut", "cre"),
                      email = "adrian.staempfli@ost.ch"),
               person(given = "Christoph",
                      family = "Strauss",
                      role = "aut"))
as necessary.
Maintainer: ‘Zardad Khan <zardadkhan@awkum.edu.pk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zardad",
                      family = "Khan",
                      role = c("aut", "cre"),
                      email = "zardadkhan@awkum.edu.pk"),
               person(given = "Asma",
                      family = "Gul",
                      role = "aut"),
               person(given = "Aris",
                      family = "Perperoglou",
                      role = "aut"),
               person(given = "Osama",
                      family = "Mahmoud",
                      role = "aut"),
               person(given = "Werner",
                      family = "Adler",
                      role = "aut"),
               person(family = "Miftahuddin",
                      role = "aut"),
               person(given = "Berthold",
                      family = "Lausen",
                      role = "aut"))
as necessary.
Maintainer: ‘Marcus Young <M.A.Young@soton.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) otp_create_surface.Rd:33: Lost braces; missing escapes or markup?
    33 | The file will be named surface_{id}.tiff, with {id} replaced by the OTP id assigned
       |                                ^
checkRd: (-1) otp_create_surface.Rd:33: Lost braces; missing escapes or markup?
    33 | The file will be named surface_{id}.tiff, with {id} replaced by the OTP id assigned
       |                                                ^
checkRd: (-1) imput_cov.Rd:79: Lost braces
    79 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
       |                                                                                                                                                                 ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
    47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
       |                                                                                                                     ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
    47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
       |                                                                                                                                                   ^
checkRd: (-1) merge_dbs.Rd:179: Lost braces
   179 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
       |                                                                                                                                                                 ^
Maintainer: ‘Pietro Coretto <pcoretto@unisa.it>’

Package CITATION file contains call(s) to old-style personList() or
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Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Junwen Xia <xiajunwen@ruc.edu.cn>’

The Description field contains
  available (Xia, J., Zhan, Z., Zhang, J. (2022) <arXiv:2210.05538>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sizhong Yang <yanglzu@163.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Sizhong",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yanglzu@163.com")
as necessary.
Maintainer: ‘Alexandra Linz <amlinz16@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandra",
                    family = "Linz",
                    role = c("aut", "cre"),
                    email = "amlinz16@gmail.com")
as necessary.
Maintainer: ‘Finlay Campbell <finlaycampbell93@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
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Specified C++11: please drop specification unless essential
Maintainer: ‘Finlay Campbell <finlaycampbell93@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘zika_girardot_2015.Rd’:
    https://doi.org/10.2807/1560-7917.ES.2016.21.28.30283
Maintainer: ‘Rafael Pilliard Hellwig <rafael.taph@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) fmat.Rd:15: Lost braces; missing escapes or markup?
    15 | \item outcome: codes {I, P, R, NC, O, UH, UO, eUH, eUO, NE}
       |                      ^
checkRd: (-1) fmat.Rd:24: Lost braces; missing escapes or markup?
    24 | The input parameters given by the user are {I, P, R, NC, O, UH, UO} and
       |                                            ^
checkRd: (-1) fmat.Rd:25: Lost braces; missing escapes or markup?
    25 | the parameter 'e'. The parameter e is multiplied by {UH, UO} internally so as to
       |                                                     ^
checkRd: (-1) fmat.Rd:26: Lost braces; missing escapes or markup?
    26 | produce {eUH, eUO}.
       |         ^
checkRd: (-1) middleearth.Rd:14: Lost braces; missing escapes or markup?
    14 | \item \strong{code:} one of the outcome codes {I, P, R, NC, O, UH, UO, UH, UO, NE}
       |                                               ^
Maintainer: ‘Andres Missiego Manjon <andres.missiego@edu.uah.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andres", "Missiego"),
                      family = "Manjon",
                      role = c("aut", "cre"),
                      email = "andres.missiego@edu.uah.es"),
               person(given = c("Juan", "Jose", "Cuadrado"),
                      family = "Gallego",
                      role = "aut"))
as necessary.
Maintainer: ‘Antony Unwin <unwin@math.uni-augsburg.de>’

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  Authors@R: person(given = "Antony",
                    family = "Unwin",
                    role = c("aut", "cre"),
                    email = "unwin@math.uni-augsburg.de")
as necessary.
Maintainer: ‘Lukasz Komsta <lukasz.komsta@umlub.pl>’

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                    family = "Komsta",
                    role = c("aut", "cre"),
                    email = "lukasz.komsta@umlub.pl")
as necessary.
Maintainer: ‘Jeremy Beaulieu <jmbeauli@uark.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = c("Jeremy", "M."),
                      family = "Beaulieu",
                      role = "aut",
                      email = "jmbeauli@uark.edu"),
               person(given = "Brian",
                      family = "O'Meara",
                      role = "aut",
                      email = "bomeara@utk.edu"),
               person(given = "Jeremy",
                      family = "Beaulieu",
                      role = "cre",
                      email = "jmbeauli@uark.edu"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘owid.R’
Maintainer: ‘E. Andres Houseman <eahouseman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "Andres"),
                      family = "Houseman",
                      role = c("aut", "cre"),
                      email = "eahouseman@gmail.com"),
               person(family = "Sc.D.",
                      role = "aut"),
               person(given = c("Kevin", "C."),
                      family = "Johnson",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Changes
Maintainer: ‘Marion Brandolini-Bunlon <marion.brandolini-bunlon@inra.fr>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Marion",
                      family = "Brandolini-Bunlon",
                      role = c("aut", "cre"),
                      email = "marion.brandolini-bunlon@inra.fr"),
               person(given = "Stephanie",
                      family = "Bougeard",
                      role = "aut"),
               person(given = "Melanie",
                      family = "Petera",
                      role = "aut"),
               person(given = "Estelle",
                      family = "Pujos-Guillot",
                      role = "aut"))
as necessary.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
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  Authors@R: c(person(given = c("Juan", "Antonio"),
                      family = "Balbuena",
                      role = "aut",
                      email = "j.a.balbuena@uv.es"),
               person(given = "Timothee",
                      family = "Poisot",
                      role = "aut",
                      email = "tim@poisotlab.io"),
               person(given = "Matthew",
                      family = "Hutchinson",
                      role = c("aut", "cre"),
                      email = "matthewhutchinson15@gmail.com"),
               person(given = c("Fernando", "Cagua;", "see", "PLoS", "ONE", "Balbuena", "et", "al", "2013"),
                      family = "<https://doi.org/10.1371/journal.pone.0061048>",
                      role = "aut",
                      email = "https://doi.org/10.1371/journal.pone.0061048"))
as necessary.
checkRd: (-1) residuals_paco.Rd:10: Escaped LaTeX specials: \$
Maintainer: ‘Malte S. Kurz <mkurz-software@gmx.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
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Maintainer: ‘Ye Henry Li <hlowl2@gmail.com>’

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  Authors@R: c(person(given = c("Ye", "Henry"),
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "hlowl2@gmail.com"),
               person(given = "Dangna",
                      family = "Li",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Marina Evangelou <m.evangelou@ic.ac.uk>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Marina",
                    family = "Evangelou",
                    role = c("aut", "cre"),
                    email = "m.evangelou@ic.ac.uk")
as necessary.
Maintainer: ‘Steve Haroz <painbow@steveharoz.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Steve",
                    family = "Haroz",
                    role = c("aut", "cre"),
                    email = "painbow@steveharoz.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/steveharoz/painbow/issues/new
which should likely be
  https://github.com/steveharoz/painbow/issues/new/issues
instead.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Stephane Champely <champely@univ-lyon1.fr>’

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                    family = "Champely",
                    role = c("aut", "cre"),
                    email = "champely@univ-lyon1.fr")
as necessary.
Maintainer: ‘Catherine Hurley <catherine.hurley@mu.ie>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "C.B.",
                      family = "Hurley",
                      role = "aut"),
               person(given = "R.W.",
                      family = "Oldford",
                      role = "aut"),
               person(given = "Catherine",
                      family = "Hurley",
                      role = "cre",
                      email = "catherine.hurley@mu.ie"))
as necessary.
'library' or 'require' calls not declared from:
  ‘gclus’ ‘irr’ ‘seriation’
checkRd: (-1) MICS2014Ch.Rd:296: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Ch.Rd:297: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HH.Rd:214: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HH.Rd:215: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HL.Rd:109: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014HL.Rd:110: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Wm.Rd:336: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) MICS2014Wm.Rd:337: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Muhammad Yaseen <myaseen208@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Muhammad",
                      family = "Yaseen",
                      role = c("aut", "cre"),
                      email = "myaseen208@gmail.com"),
               person(given = "Muhammad",
                      family = "Usman",
                      role = "ctb"))
as necessary.
checkRd: (-1) PakPMICS2018bh.Rd:88: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018bh.Rd:89: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Muhammad Yaseen <myaseen208@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Muhammad",
                      family = "Yaseen",
                      role = c("aut", "cre"),
                      email = "myaseen208@gmail.com"),
               person(given = "Muhammad",
                      family = "Usman",
                      role = "ctb"))
as necessary.
checkRd: (-1) PakPMICS2018fs.Rd:308: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018fs.Rd:309: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018hh.Rd:362: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018hh.Rd:363: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mm.Rd:69: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mm.Rd:70: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mn.Rd:243: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) PakPMICS2018mn.Rd:244: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tim",
                      family = "Lucas",
                      role = c("aut", "cre"),
                      email = "timcdlucas@gmail.com"),
               person(given = "Anjali",
                      family = "Goswami",
                      role = "aut"))
as necessary.
Maintainer: ‘David W. Bapst <dwbapst@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = c("David", "W."),
                      family = "Bapst",
                      role = c("aut", "cre"),
                      email = "dwbapst@gmail.com"),
               person(given = c("Peter", "J."),
                      family = "Wagner",
                      role = "aut"))
as necessary.
Maintainer: ‘Emil Hvitfeldt <emilhhvitfeldt@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = c("See", "AUTHORS"),
                      family = "file.",
                      role = "aut"),
               person(given = "Emil",
                      family = "Hvitfeldt",
                      role = "cre",
                      email = "emilhhvitfeldt@gmail.com"))
as necessary.
Maintainer: ‘Tim Lucas <timcdlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Tim",
                    family = "Lucas",
                    role = c("aut", "cre"),
                    email = "timcdlucas@gmail.com")
as necessary.
Maintainer: ‘Allison Horst <ahorst@ucsb.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Heidi Seibold <heidi@seibold.co>’

The Description field contains
  found in Seibold, Hothorn, Zeileis (2016) <arXiv:1612.07498>. The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiaoyan Wang<xywang@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "xywang@ucla.edu"),
               person(given = "Gang",
                      family = "Li",
                      role = "aut"))
as necessary.

The Description field contains
  to Gang Li and Xiaoyan Wang (2016) <arXiv:1611.03063> for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Joseph G Kreke <jkreke2@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "G"),
                      family = "Kreke",
                      role = c("aut", "cre"),
                      email = "jkreke2@gmail.com"),
               person(given = "PhD;",
                      family = "Harris",
                      role = "aut"),
               person(given = c("Inc.", "Sangeet"),
                      family = "Khemlani",
                      role = "aut"),
               person(given = c("PhD;", "Naval", "Research", "Laboratory.", "Greg"),
                      family = "Trafton",
                      role = "aut"),
               person(given = c("PhD;", "Naval", "Research"),
                      family = "Laboratory.",
                      role = "aut"))
as necessary.
Maintainer: ‘Jing Peng <jing.peng@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jing",
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "jing.peng@uconn.edu")
as necessary.
Maintainer: ‘Jacob A. Long <jacob.long@sc.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/jacob-long/panelr
which should likely be
  https://github.com/jacob-long/panelr/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_panels.R’ ‘clean_raw.Rd’ ‘create_means.R’ ‘helper_functions.R’
    ‘panelsummary.R’ ‘panelsummary_raw.R’
checkRd: (-1) panelsummary.Rd:112: Lost braces; missing escapes or markup?
   112 | \item `"{exp(estimate) * std.error}"
       |         ^
checkRd: (-1) panelsummary_raw.Rd:90: Lost braces; missing escapes or markup?
    90 | \item `"{exp(estimate) * std.error}"
       |         ^
Maintainer: ‘Cathrine Ulla Jensen <cuj@ifro.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Toke", "Emil"),
                      family = "Panduro",
                      role = "aut",
                      email = "tepp@ifro.ku.dk"),
               person(given = c("Cathrine", "Ulla"),
                      family = "Jensen",
                      role = c("aut", "cre"),
                      email = "cuj@ifro.ku.dk"))
as necessary.
checkRd: (-1) hvidovre.Rd:11: Lost braces
    11 |     \item{\code{roof_tile}}{a numeric vector, roof_tile}{dummy, roof made out of tiles =1}
       |                                                         ^
checkRd: (-1) hvidovre.Rd:25: Lost braces
    25 |     \item{\code{railways}}{a numeric vector, railways}{distance to nearest railway in meters}
       |                                                       ^
checkRd: (-1) hvidovre.Rd:26: Lost braces
    26 |     \item{\code{nature_SLD}}{a numeric vector, nature_SLD}{distance to nearest nature area in meters}
       |                                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mod_control_form.R’ ‘mod_leaflet_map.R’
Maintainer: ‘Jing hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "Joseph", "L."),
                      family = "Schafer",
                      role = "aut"),
               person(given = c("Jing", "hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Maintainer: ‘Marek Hlavac <mhlavac@alumni.princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "mhlavac@alumni.princeton.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Erin Conlon <econlon@umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexey",
                      family = "Miroshnikov",
                      role = "aut"),
               person(given = "Erin",
                      family = "Conlon",
                      role = c("aut", "cre"),
                      email = "econlon@umass.edu"))
as necessary.
Maintainer: ‘Thuc Duy Le <Thuc.Le@unisa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thuc", "Duy"),
                      family = "Le",
                      role = c("aut", "cre"),
                      email = "thuc.le@unisa.edu.au"),
               person(given = "Tao",
                      family = "Hoang",
                      role = "aut"),
               person(given = "Shu",
                      family = "Hu",
                      role = "aut"),
               person(given = "Liang",
                      family = "Zhang",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Samuel Wilson <samwilson303@gmail.com>’

The Description field contains
  al. <arXiv:1206.2944>.  The package allows the user to run scoring
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) returns.Rd:21: Lost braces; missing escapes or markup?
    21 |   \item{...}{Other options including {type} which refers to the
       |                                      ^
Maintainer: ‘Guoli Sun <guolisun87@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Krasnitz",
                      role = "aut"),
               person(given = "Guoli",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "guolisun87@gmail.com"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) PPS.fit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PPS.fit.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forbes400.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) forbes400.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turkey.Rd:11: Lost braces in \itemize; meant \describe ?
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/parglm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Alexios Galanos <alexios@4dscape.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sacha",
                    family = "Epskamp",
                    role = c("aut", "cre"),
                    email = "mail@sachaepskamp.com")
as necessary.
Maintainer: ‘Marcela Nunez Lemus <marcela.nunez.lemus@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Marcela", "Nunez"),
                      family = "Lemus",
                      role = c("aut", "cre"),
                      email = "marcela.nunez.lemus@gmail.com"),
               person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = "aut"),
               person(given = c("Larissa", "Avila"),
                      family = "Matos",
                      role = "aut"),
               person(given = c("Victor", "H"),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Maintainer: ‘Annette Molinaro <annette.molinaro@ucsf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Annette",
                      family = "Molinaro",
                      role = c("aut", "cre"),
                      email = "annette.molinaro@ucsf.edu"),
               person(given = "Adam",
                      family = "Olshen",
                      role = "aut",
                      email = "olshena@biostat.ucsf.edu"),
               person(given = "Karen",
                      family = "Lostritto",
                      role = "aut",
                      email = "karen.lostritto@yale.edu"),
               person(given = "Gregory",
                      family = "Ryslik",
                      role = "aut",
                      email = "gregory.ryslik@yale.edu"),
               person(given = "Steve",
                      family = "Weston",
                      role = "aut",
                      email = "stephen.weston@yale.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ben Derrick <ben.derrick@uwe.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Derrick",
                    role = c("aut", "cre"),
                    email = "ben.derrick@uwe.ac.uk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘evolve.Rd’ ‘genesis.Rd’ ‘simulate.Rd’ ‘wield.Rd’
Maintainer: ‘Adam Clark <adam.tclark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Clark",
                    role = c("aut", "cre"),
                    email = "adam.tclark@gmail.com")
as necessary.
Maintainer: ‘David Weisman <David.Weisman@acm.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Weisman",
                      role = c("aut", "cre"),
                      email = "david.weisman@acm.org"),
               person(given = "Dan",
                      family = "Simovici",
                      role = "aut"))
as necessary.
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("cre", "aut"),
                      email = "normmatloff@gmail.com"),
               person(given = "Clark",
                      family = "Fitzgerald",
                      role = "aut",
                      email = "clarkfitzg@gmail.com"),
               person(given = c("with", "contributions", "by", "Alex"),
                      family = "Rumbaugh",
                      email = "aprumbaugh@ucdavis.edu"),
               person(given = "Hadley",
                      family = "Wickham",
                      email = "h.wickham@gmail.com"))
as necessary.
Found the following files/directories:
  ‘co2’ ‘co2.1’ ‘co2.2’ ‘co2s.1’ ‘co2s.2’ ‘ctm.1’ ‘ctm.2’ ‘m’ ‘m.1’
  ‘m.2’ ‘test’ ‘test.1’ ‘test.2’ ‘testa.1’ ‘testa.2’ ‘xfile.1’
  ‘xfile.2’
Maintainer: ‘Donghwan Kim <donhkim9714@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Donghwan",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "donhkim9714@korea.ac.kr")
as necessary.
Maintainer: ‘Yukun Zhang <yukzhang@ucalgary.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yukun",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "yukzhang@ucalgary.ca"),
               person(given = "Milad",
                      family = "Yavari",
                      role = "aut"),
               person(given = "Bob",
                      family = "Haennel",
                      role = "aut"),
               person(given = "Haocheng",
                      family = "Li",
                      role = c("aut", "ctb")))
as necessary.
Maintainer: ‘Zhiqiu Hu <zhiqiu.hu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhiqiu", "Hu;", "Shizhong", "Xu;", "Zhiquan", "Wang;", "Rongcai"),
                      family = "Yang",
                      role = "aut"),
               person(given = "Zhiqiu",
                      family = "Hu",
                      role = "cre",
                      email = "zhiqiu.hu@gmail.com"))
as necessary.
checkRd: (-1) PAS-package.Rd:30: Lost braces
    30 |     {\code{bin model}}{\cr Zhiqiu Hu, Zhiquan Wang, and Shizhong Xu (2012) An infinitesimal model for quantitative trait genomic value prediction. PloS ONE 7: e41336.}
       |                       ^
Maintainer: ‘Marco Chak Yan YU <marcocyyu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marco", "Chak", "Yan"),
                    family = "YU",
                    role = c("aut", "cre"),
                    email = "marcocyyu@gmail.com")
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Emmanuel Charpentier <emm.charpentier@free.fr>’

Found the following (possibly) invalid file URI:
  URI: emm.charpentier@free.fr
    From: man/patchSynctex-package.Rd
Maintainer: ‘Steven Andrew Culpepper <sculpepp@illinois.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Seong Hyun Hwang <krshh1412@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Seong", "Hyun"),
                      family = "Hwang",
                      role = c("aut", "cre"),
                      email = "krshh1412@gmail.com"),
               person(given = c("Rachel", "Myoung"),
                      family = "Moon",
                      role = "aut"))
as necessary.
checkRd: (-1) plotHeat.Rd:113: Lost braces
   113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
       |     ^
Maintainer: ‘Chunqiao Luo <chunqiaoluo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Dyfan Jones <dyfan.r.jones@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://docs.aws.amazon.com/connect/latest/adminguide/historical-metrics-definitions.html##average-non-talk-time-historical
    From: man/connect_get_metric_data_v2.Rd
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Dyfan Jones <dyfan.r.jones@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://docs.aws.amazon.com/kms/latest/developerguide/concepts.html##aws-managed-cmk
    From: man/kms_describe_key.Rd
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Hoffmann",
                      role = c("aut", "cre"),
                      email = "tjhoffm@gmail.com"),
               person(given = c("with", "contributions", "from", "Christoph"),
                      family = "Lange",
                      role = "aut",
                      email = "clange@hsph.harvard.edu"))
as necessary.
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Rampal", "S."),
                    family = "Etienne",
                    role = c("aut", "cre"),
                    email = "r.s.etienne@rug.nl")
as necessary.
checkRd: (-1) pbd_loglik.Rd:31: Lost braces
    31 |     \code{pars2[1]} {set the conditioning on non-extinction of the clade (1) or not (0) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:32: Lost braces
    32 |     \code{pars2[2]} {sets whether the likelihood is for the branching times (0) or the phylogeny (1) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:33: Lost braces
    33 |     \code{pars2[3]} {sets whether the first element of the branching times is the stem (1) or the crown (2) age \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:34: Lost braces
    34 |     \code{pars2[4]} {sets whether the parameters and likelihood should be shown on screen (1) or not (0) \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:35: Lost braces
    35 |     \code{pars2[5]} {sets which method should be used in the ode-solver. Default is 'lsoda'. See package deSolve for details. \cr \cr}
       |                     ^
checkRd: (-1) pbd_loglik.Rd:36: Lost braces
    36 |     \code{pars2[6]}{Sets the lower bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}
       |                    ^
checkRd: (-1) pbd_loglik.Rd:37: Lost braces
    37 |     \code{pars2[7]}{Sets the upper bound of the number of species on which conditioning should be done when cond = 2. Set this to 0 when conditioning should be done on precisely the number of species (default)\cr \cr}  
       |                    ^
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaodong",
                      family = "Luo",
                      role = "aut"),
               person(given = "Bo",
                      family = "Huang",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu",
                      comment = c(ORCID = "0000-0002-5893-0169")))
as necessary.
Maintainer: ‘Brenton Kenkel <brenton.kenkel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fortran", "code", "by", "Alan", "Genz.", "R", "code", "by", "Brenton"),
                      family = "Kenkel",
                      role = "aut"),
               person(given = c("based", "on", "Adelchi", "Azzalini's", "'mnormt'"),
                      family = "package.",
                      role = "aut"),
               person(given = "Brenton",
                      family = "Kenkel",
                      role = "cre",
                      email = "brenton.kenkel@gmail.com"))
as necessary.
Maintainer: ‘Kevin kuang <kvn.kuang@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Kuang",
                      role = c("aut", "cre"),
                      email = "kvn.kuang@mail.utoronto.ca",
                      comment = "aut"),
               person(given = "Quyu",
                      family = "Kong",
                      role = "aut",
                      comment = "ctb"),
               person(given = "Francesco",
                      family = "Napolitano",
                      role = "aut",
                      comment = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  perProb.Rd: pMvdc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Schulz",
                    role = c("aut", "cre"),
                    email = "ades-s@web.de")
as necessary.
File ‘PBSddesolve/libs/PBSddesolve.so’:
  Found non-API call to R: ‘FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
File ‘PBSmodelling/libs/PBSmodelling.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘swang1 <swang1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shuangcai",
                      family = "Wang",
                      role = "aut"),
               person(family = "swang1",
                      role = "cre",
                      email = "swang1@gmail.com"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Robitzsch",
                    role = c("aut", "cre"),
                    email = "robitzsch@ipn.uni-kiel.de",
                    comment = c(ORCID = "0000-0002-8226-3132"))
as necessary.
Maintainer: ‘Manuela Ott <manuela.c.ott@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘twoby2Calibrate.Rd’:
    https://doi.org/10.1080/01621459.2018.1469992
    https://doi.org/10.1111/insr.12307
checkRd: (-1) twoby2Calibrate.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:85-86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:87-92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:97-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:101-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:104-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:108-110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) twoby2Calibrate.Rd:111-116: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Elia Degiorgi <degioe@usi.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elia",
                      family = "Degiorgi",
                      role = c("aut", "cre"),
                      email = "degioe@usi.ch"),
               person(given = "Federico",
                      family = "Milan",
                      role = "aut"),
               person(given = "Davide",
                      family = "Zaramella",
                      role = "aut"),
               person(given = "Valerija",
                      family = "Stoeva",
                      role = "aut"))
as necessary.
Maintainer: ‘Pedro Fonseca <pedro.teles.fonseca@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Derek W. Brown <derek9@gwmail.gwu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marie Chavent <Marie.Chavent@u-bordeaux.fr>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘MFAmix.Rd’:
    \keyword{multivariate, mixed type data, data struc [TRUNCATED]
Maintainer: ‘Maxime Turgeon <maxime.turgeon@mail.mcgill.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yi-Hui Zhou <yihui_zhou@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yi-Hui",
                    family = "Zhou",
                    role = c("aut", "cre"),
                    email = "yihui_zhou@ncsu.edu")
as necessary.
Maintainer: ‘Pariya Behrouzi <pariya.behrouzi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Willem",
                      family = "Kruijer",
                      role = "aut"),
               person(given = "Pariya",
                      family = "Behrouzi",
                      role = c("aut", "cre"),
                      email = "pariya.behrouzi@gmail.com"),
               person(given = c("Maria", "Xose"),
                      family = "Rodriguez-Alvarez",
                      role = "aut"))
as necessary.
Maintainer: ‘B N Mandal <mandal.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("B", "N"),
                      family = "Mandal",
                      role = c("aut", "cre"),
                      email = "mandal.stat@gmail.com"),
               person(given = "Jun",
                      family = "Ma",
                      role = "aut",
                      email = "jun.ma@mq.edu.au"))
as necessary.
Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.
Maintainer: ‘Christine Hohensinn <research@christinehohensinn.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christine",
                    family = "Hohensinn",
                    role = c("cre", "aut"),
                    email = "research@christinehohensinn.at")
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Kenneth",
                      family = "Tay",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "cre",
                      email = "tibs@stanford.edu"))
as necessary.

The Description field contains
  regression' <arXiv:1810.04651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrew Ying <aying9339@gmail.com>’

The Description field contains
  arXiv e-prints, arXiv-2009 <arXiv:2009.10982>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Krzysztof Bartoszek <krzbar@protonmail.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Krzysztof",
                      family = "Bartoszek",
                      role = c("aut", "cre"),
                      email = "krzbar@protonmail.ch"),
               person(given = "Pietro",
                      family = "Lio'",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) PCM_ABC.Rd:106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:108-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:114: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:117: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:205-207: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:208-211: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:212-216: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:221-224: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:225-228: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:229-231: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:232: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:233: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:234: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:235: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:236: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:237: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:238: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:239: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PCM_ABC.Rd:240: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:58-59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulate_phylproc.Rd:67: Lost braces in \itemize; meant \describe ?
Maintainer: ‘S. Varet <suzanne.varet@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "S.",
                    family = "Varet",
                    role = c("aut", "cre"),
                    email = "suzanne.varet@universite-paris-saclay.fr")
as necessary.
Maintainer: ‘Kristof Meers <kristof.meers+cran@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marlies",
                      family = "Vervloet",
                      role = c("aut", "cre")),
               person(given = "Henk",
                      family = "Kiers",
                      role = "aut"),
               person(given = "Eva",
                      family = "Ceulemans",
                      role = "ctb"),
               person(given = "Kristof",
                      family = "Meers",
                      role = "cre",
                      email = "kristof.meers+cran@kuleuven.be"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Lawrence G. Chillrud [aut, cre, cph] (<https://orcid.org/0000-0003-0727-0161>), Jaime Benavides [aut] (<https://orcid.org/0000-0002-1851-5155>), Elizabeth A. Gibson [aut] (<https://orcid.org/0000-0001-5119-5133>), Junhui Zhang [aut] (<https://orcid.org/0009-0008-5922-1058>), Jingkai Yan [aut] (<https://orcid.org/0000-0002-2094-2092>), John N. Wright [aut], Jeff Goldsmith [aut], Marianthi-Anna Kioumourtzoglou [aut] (<https://orcid.org/0000-0001-5710-4992>), Columbia University [fnd] (00hj8s172)’
  Authors@R: ‘Lawrence G. Chillrud [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-0727-0161>), Jaime Benavides [aut] (ORCID: <https://orcid.org/0000-0002-1851-5155>), Elizabeth A. Gibson [aut] (ORCID: <https://orcid.org/0000-0001-5119-5133>), Junhui Zhang [aut] (ORCID: <https://orcid.org/0009-0008-5922-1058>), Jingkai Yan [aut] (ORCID: <https://orcid.org/0000-0002-2094-2092>), John N. Wright [aut], Jeff Goldsmith [aut], Marianthi-Anna Kioumourtzoglou [aut] (ORCID: <https://orcid.org/0000-0001-5710-4992>), Columbia University [fnd] (ROR: <https://ror.org/00hj8s172>)’
checkRd: (-1) getPCRAData.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getPCRAData.Rd:29: Lost braces in \itemize; meant \describe ?
'::' or ':::' imports not declared from:
  ‘MASS’ ‘tensr’
'library' or 'require' calls not declared from:
  ‘MASS’ ‘facmodCS’ ‘fit.models’ ‘sandwich’
Maintainer: ‘Mahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Delia Bailey <delia.bailey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Delia",
                      family = "Bailey",
                      role = c("aut", "cre"),
                      email = "delia.bailey@gmail.com"),
               person(given = c("Jonathan", "N."),
                      family = "Katz",
                      role = "aut",
                      email = "jkatz@caltech.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Jason Wilson <jason.wilson@biola.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jason",
                    family = "Wilson",
                    role = c("aut", "cre"),
                    email = "jason.wilson@biola.edu")
as necessary.
Maintainer: ‘Aleksei Krasikov <krasikov.as@phystech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aleksei",
                    family = "Krasikov",
                    role = c("aut", "cre"),
                    email = "krasikov.as@phystech.edu")
as necessary.
checkRd: (-1) pcvpcr.Rd:42: Lost braces; missing escapes or markup?
    42 | set {X, y} and cross-validation.
       |     ^
checkRd: (-1) pcvpls.Rd:42: Lost braces; missing escapes or markup?
    42 | set {X, y} and cross-validation.
       |     ^
Found the following significant warnings:
  rcpp_coxph.h:368:40: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = unsigned int; T1 = arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find>; out_eT = int; typename arma::arma_not_cx<in_eT>::result = unsigned int]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  rcpp_coxph.h:377:44: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = unsigned int; T1 = arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find>; out_eT = int; typename arma::arma_not_cx<in_eT>::result = unsigned int]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pda.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Andreas M. Brandmaier <brandmaier@mpib-berlin.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andreas", "M."),
                    family = "Brandmaier",
                    role = c("aut", "cre"),
                    email = "brandmaier@mpib-berlin.mpg.de")
as necessary.

Found the following (possibly) invalid file URI:
  URI: openclipart.org
    From: man/complex.shapes.Rd
Maintainer: ‘Menardi Giovanna <menardi@stat.unipd.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jenny Farmer <jfarmer@carolina.rr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jenny",
                      family = "Farmer",
                      role = c("aut", "cre"),
                      email = "jfarmer@carolina.rr.com"),
               person(given = "Donald",
                      family = "Jacobs",
                      role = "aut",
                      email = "djacobs1@uncc.ecu"))
as necessary.
Maintainer: ‘Jeffrey Wong <jeff.ct.wong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Wong",
                    role = c("aut", "cre"),
                    email = "jeff.ct.wong@gmail.com")
as necessary.
Maintainer: ‘J.F. Palomeque-Gonzalez <jfpalomeque.gonzalez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "J.F.",
                      family = "Palomeque-Gonzalez",
                      role = c("aut", "cre"),
                      email = "jfpalomeque.gonzalez@gmail.com"),
               person(given = "M.",
                      family = "San-Juan",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhenbang Wang <bruce1edward@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Javier",
                      family = "Cabrera",
                      role = "aut",
                      email = "xavier.cabrera@gmail.com"),
               person(given = "Fei",
                      family = "Wang",
                      role = "aut",
                      email = "cherry8177@gmail.com"),
               person(given = "Zhenbang",
                      family = "Wang",
                      role = "cre",
                      email = "bruce1edward@gmail.com"))
as necessary.
Maintainer: ‘Luca Belmonte <luca.belmonte@unimore.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luca",
                      family = "Belmonte",
                      role = c("aut", "cre"),
                      email = "luca.belmonte@unimore.it"),
               person(given = c("Sheref", "S."),
                      family = "Mansy",
                      role = "aut",
                      email = "sheref.mansy@unitn.it"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PdPDB.Rd’:
    \keyword{PDB,}
    \keyword{alignment,}
    \keyword{metal,}
    \keyword{metalloproteins,}
    \keyword{patterns,}
Maintainer: ‘Steven E. Pav <shabbychef@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Adam J. Rothman <arothman@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J."),
                    family = "Rothman",
                    role = c("aut", "cre"),
                    email = "arothman@umn.edu")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pdSpecEst.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) pdkMeans.Rd:63: Lost braces
    63 | \cite{C18}{pdSpecEst} for more details. Note that this comes at the cost of increased computation time in comparison to one
       |           ^
checkRd: (-1) embedded.blocks.Rd:39: Lost braces
    39 | \item{miv.threshold}{MIV (marginal information value) entrance threshold applicable only for code{"stepMIV"} method.
       |                                                                                                  ^
checkRd: (-1) embedded.blocks.Rd:44: Lost braces
    44 | \item{m.ch.p.val}{Significance level of p-value for marginal chi-square test applicable only for code{"stepMIV"} method.
       |                                                                                                      ^
checkRd: (-1) ensemble.blocks.Rd:39: Lost braces
    39 | \item{miv.threshold}{MIV (marginal information value) entrance threshold applicable only for code{"stepMIV"} method.
       |                                                                                                  ^
checkRd: (-1) ensemble.blocks.Rd:44: Lost braces
    44 | \item{m.ch.p.val}{Significance level of p-value for marginal chi-square test applicable only for code{"stepMIV"} method.
       |                                                                                                      ^
checkRd: (-1) staged.blocks.Rd:39: Lost braces
    39 | \item{miv.threshold}{MIV (marginal information value) entrance threshold applicable only for code{"stepMIV"} method.
       |                                                                                                  ^
checkRd: (-1) staged.blocks.Rd:44: Lost braces
    44 | \item{m.ch.p.val}{Significance level of p-value for marginal chi-square test applicable only for code{"stepMIV"} method.
       |                                                                                                      ^
Maintainer: ‘Yuanhui Xiao <xiao_yuanhui@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuanhui",
                    family = "Xiao",
                    role = c("aut", "cre"),
                    email = "xiao_yuanhui@hotmail.com")
as necessary.
checkRd: (-1) Peacock.test-package.Rd:28: Escaped LaTeX specials: \_
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Toby", "Dylan"),
                      family = "Hocking",
                      role = c("aut", "cre"),
                      email = "toby.hocking@r-project.org"),
               person(given = "Guillem",
                      family = "Rigaill",
                      role = "aut"))
as necessary.
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Hughes",
                    role = c("aut", "cre"),
                    email = "drjphughesjr@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juha Karvanen <juha.karvanen@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Juha",
                    family = "Karvanen",
                    role = c("aut", "cre"),
                    email = "juha.karvanen@iki.fi")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) variogramGuess.Rd:94: Lost braces
    94 | Method \code{"b"} was proposed by \doi{10.1016/0098-3004(95)00095-X}{Jian et al. (1996)} and
       |                                                                     ^
checkRd: (-1) variogramGuess.Rd:98: Lost braces
    98 | \doi{10.1016/j.cageo.2008.10.011}{Hiemstra et al. (2009)}.
       |                                  ^
checkRd: (-1) variogramGuess.Rd:100: Lost braces
   100 | Method \code{"d"} was developed by \doi{10.1007/s11004-012-9434-1}{Desassis & Renard (2012)}.
       |                                                                   ^
Maintainer: ‘Qingyang Zhang <qz008@uark.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "qz008@uark.edu"),
               person(given = "Yanchuan",
                      family = "Li",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PEGroupTesting-package.Rd’:
    \keyword{Group testing, maximum likelihood estimat [TRUNCATED]
Maintainer: ‘Stéphane Guerrier <stef.guerrier@gmail.com>’

The Description field contains
  methods proposed in Guerrier et al. (2023) <arXiv:2012.10745>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniele Cuntrera <daniele.cuntrera@unipa.it>’

The Description field contains
  Muggeo, V. M. (2022) <arXiv:2212.08582>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jelle Goeman <j.j.goeman@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jelle",
                      family = "Goeman",
                      role = c("aut", "cre"),
                      email = "j.j.goeman@lumc.nl"),
               person(given = "Rosa",
                      family = "Meijer",
                      role = "aut"),
               person(given = "Nimisha",
                      family = "Chaturvedi",
                      role = "aut"),
               person(given = "Matthew",
                      family = "Lueder",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/penalized.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) breslow.Rd:27: Escaped LaTeX specials: \# \#
Maintainer: ‘Christian Schellhase <cschellhase@wiwi.uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Schellhase",
                    role = c("aut", "cre"),
                    email = "cschellhase@wiwi.uni-bielefeld.de")
as necessary.
checkRd: (-1) my.bspline.Rd:38: Escaped LaTeX specials: \$ \$ \$
Maintainer: ‘Andreas Groll <groll@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Groll",
                    role = c("aut", "cre"),
                    email = "groll@statistik.tu-dortmund.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘pencoxfrail.rd’:
    \keyword{Cox frailty model; LASSO; Penalization; T [TRUNCATED]
'library' or 'require' call not declared from: ‘mgcv’
Maintainer: ‘Christian Schellhase <christian.schellhase@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Schellhase",
                    role = c("aut", "cre"),
                    email = "christian.schellhase@gmx.net")
as necessary.
checkRd: (-1) my.bspline.Rd:21: Escaped LaTeX specials: \$ \$ \$ \$ \$ \$
checkRd: (-1) my.bspline.Rd:27: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) pendensity.Rd:52: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:57: Escaped LaTeX specials: \$ \$
checkRd: (-1) pendensity.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:82: Escaped LaTeX specials: \$ \$
checkRd: (-1) pendensity.Rd:96: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:100: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:105: Escaped LaTeX specials: \$
checkRd: (-1) pendensity.Rd:109: Escaped LaTeX specials: \$
Maintainer: ‘Elena Geminiani <geminianielena@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yan Liu <yanliuresearch@gmail.com>’

The Description field contains
  (2019) <arXiv:1912.11703>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Holger Reulen <hreulen@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Reulen",
                    role = c("aut", "cre"),
                    email = "hreulen@uni-goettingen.de")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/penPHcure.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Levi Waldron <lwaldron.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Levi",
                    family = "Waldron",
                    role = c("aut", "cre"),
                    email = "lwaldron.research@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cv_pensynth.R’
Found the following significant warnings:
  auxiliary_code.cpp:84:22: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PEPBVS.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Seyma Kalay <seymakalay@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seyma",
                    family = "Kalay",
                    role = c("aut", "cre"),
                    email = "seymakalay@hotmail.com")
as necessary.
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Nathan Sheffield <nathan@code.databio.org>’

The BugReports field in DESCRIPTION has
  https://github.com/pepkit/pepr
which should likely be
  https://github.com/pepkit/pepr/issues
instead.
Maintainer: ‘Jorge Cimentada <cimentadaj@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Julien Idé <julien.ide.fr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Idé",
                    role = c("aut", "cre"),
                    email = "julien.ide.fr@gmail.com")
as necessary.
Maintainer: ‘Marie-Pierre Sylvestre <marie-pierre.sylvestre@umontreal.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marie-Pierre",
                      family = "Sylvestre",
                      role = c("aut", "cre"),
                      email = "marie-pierre.sylvestre@umontreal.ca"),
               person(given = "Thad",
                      family = "Edens",
                      role = "aut"),
               person(given = "Todd",
                      family = "MacKenzie",
                      role = "aut"),
               person(given = "Michal",
                      family = "Abrahamowicz",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Laura Vicente-Gonzalez <laura20vg@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Laura",
                      family = "Vicente-Gonzalez",
                      role = c("aut", "cre"),
                      email = "laura20vg@usal.es"),
               person(given = c("Jose", "Luis"),
                      family = "Vicente-Villardon",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Fay",
                      role = "aut"),
               person(given = c("Michael", "P."),
                      family = "Fay",
                      role = "cre",
                      email = "mfay@niaid.nih.gov"))
as necessary.
Maintainer: ‘Alfonso Benitez-Paez <alfbenpa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alfonso",
                    family = "Benitez-Paez",
                    role = c("aut", "cre"),
                    email = "alfbenpa@gmail.com")
as necessary.
Maintainer: ‘Osama Abdalla <osama.abdalla@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Osama",
                    family = "Abdalla",
                    role = c("aut", "cre"),
                    email = "osama.abdalla@mail.utoronto.ca")
as necessary.
Maintainer: ‘Gabriel Kaiser <quantresearch.gk@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘perplexR-package.Rd’:
    \keyword{annotate;}
Maintainer: ‘Roozbeh Safshekan <rse@mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Roozbeh",
                      family = "Safshekan",
                      role = c("aut", "cre"),
                      email = "rse@mit.edu"),
               person(given = "Rich",
                      family = "Nielsen",
                      role = "aut"))
as necessary.
Maintainer: ‘Jared Huling <jaredhuling@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Jared Huling <jaredhuling@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Renfei Mao <renfeimao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Renfei",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "renfeimao@gmail.com")
as necessary.
Maintainer: ‘Kenneth B. Hoehn <perspectev@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  http://evolve.zoo.ox.ac.uk/Evolve/Perspectev.html.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘KM Gates <gateskm@email.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "KM",
                      family = "Gates",
                      role = c("aut", "cre"),
                      email = "gateskm@email.unc.edu"),
               person(given = "Zachary",
                      family = "Fisher",
                      role = "aut"),
               person(given = "Cara",
                      family = "Arizmendi",
                      role = "aut"))
as necessary.
Maintainer: ‘Piotr Sobczyk <pj.sobczyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Piotr",
                      family = "Sobczyk",
                      role = c("aut", "cre"),
                      email = "pj.sobczyk@gmail.com"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Malgorzata",
                      family = "Bogdan",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Fixed issues
Maintainer: ‘Aaron Schlegel <aaron@aaronschlegel.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Schlegel",
                    role = c("aut", "cre"),
                    email = "aaron@aaronschlegel.me")
as necessary.
checkRd: (-1) read_PN.Rd:15: Lost braces
    15 | A code{\link{marked_petrinet}}
       |       ^
Maintainer: ‘Washington Junger <wjunger@ims.uerj.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Washington",
                    family = "Junger",
                    role = c("aut", "cre"),
                    email = "wjunger@ims.uerj.br")
as necessary.
Maintainer: ‘Daniel F. Schmidt <daniel.schmidt@monash.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘pgdraw-package.Rd’:
    \keyword{distribution,}
Maintainer: ‘Gul Inan <ginan@metu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = c("aut", "cre"),
                      email = "ginan@metu.edu.tr",
                      comment = "Lecturer, Middle East Technical University"),
               person(given = "Jianhui",
                      family = "Zhou",
                      role = "aut",
                      comment = "Associate Professor, University of Virginia"),
               person(given = "Lan",
                      family = "Wang",
                      role = "aut",
                      comment = c(ROR = "Professor", "University of Minnesota")))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PGEE-package.Rd’:
    \keyword{high-dimensional covariates, longitudinal [TRUNCATED]
checkRd: (-1) PatentsRD.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) PatentsRD.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) PatentsRDUS.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) DTV.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTV.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Yang Feng <yangfengstat@gmail.com>’

The Description field contains
  projection as introduced in Fan, Feng and Xia (2019)<arXiv:1501.01617>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘J. Aravind [aut, cre] (<https://orcid.org/0000-0002-4791-442X>), J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] (www.nbpgr.ernet.in), Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)’
  Authors@R: ‘J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>), J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] (url: www.nbpgr.ernet.in), Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)’
Maintainer: ‘Gangcai Xie <gcxiester@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gangcai",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "gcxiester@gmail.com")
as necessary.
Maintainer: ‘Philip Barrett <pobarrett@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philip",
                    family = "Barrett",
                    role = c("aut", "cre"),
                    email = "pobarrett@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pgsc.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Rui",
                      family = "Qin",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘animation.gif’
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yalin",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "yalin.zhu@outlook.com"),
               person(given = "Rui",
                      family = "Qin",
                      role = "aut"))
as necessary.
checkRd: (-1) PhageCocktail.Rd:100-103: Lost braces
   100 | "Result": {
       |           ^
checkRd: (-1) PhageCocktail.Rd:105-112: Lost braces
   105 | "BacteriaLysed": {
       |                  ^
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Maintainer: ‘Lu Zhang <luzhangstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "luzhangstat@gmail.com"),
               person(given = "Jun",
                      family = "Yin",
                      role = "aut"))
as necessary.
Maintainer: ‘Jun Yin <vivien.jyin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Yin",
                      role = c("aut", "cre"),
                      email = "vivien.jyin@gmail.com"),
               person(given = "Yu",
                      family = "Du",
                      role = "aut"),
               person(given = "Sumithra",
                      family = "Mandrekar",
                      role = "aut"))
as necessary.
checkRd: (-1) rosePlotsAct.Rd:19: Lost braces; missing escapes or markup?
    19 | A \code{plotly} {htmlwidget} with rose plots for locomotor activity.
       |                 ^
checkRd: (-1) rosePlotsSleep.Rd:19: Lost braces; missing escapes or markup?
    19 | #' @return A \code{plotly} {htmlwidget} with rose plots for sleep data.
       |                            ^
Maintainer: ‘Zhili Qiao <zlqiao@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhili",
                    family = "Qiao",
                    role = c("aut", "cre"),
                    email = "zlqiao@iastate.edu")
as necessary.
Maintainer: ‘Jesse Hemerik <jesse.hemerik@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesse",
                      family = "Hemerik",
                      role = c("aut", "cre"),
                      email = "jesse.hemerik@wur.nl"),
               person(given = "Livio",
                      family = "Finos",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Doktor <daniel.doktor@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Lange",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Doktor",
                      role = c("aut", "cre"),
                      email = "daniel.doktor@ufz.de"))
as necessary.
Maintainer: ‘Maximilian Lange <maximilian.lange@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maximilian",
                    family = "Lange",
                    role = c("aut", "cre"),
                    email = "maximilian.lange@ufz.de")
as necessary.
Maintainer: ‘Koen Hufkens <koen.hufkens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bijan",
                      family = "Seyednasrollah",
                      role = c("aut", "cre"),
                      email = "bijan.s.nasr@gmail.com"),
               person(given = c("Jennifer", "J."),
                      family = "Swenson",
                      role = "aut"),
               person(given = "Jean-Christophe",
                      family = "Domec",
                      role = "aut"),
               person(given = c("James", "S."),
                      family = "Clark",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Maximilian Lange <maximilian.lange@ufz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joerg",
                      family = "Schaber",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Lange",
                      role = "cre",
                      email = "maximilian.lange@ufz.de"))
as necessary.
checkRd: (-1) connectedSets.Rd:27: Escaped LaTeX specials: \_ \_
checkRd: (-1) connectedSets.Rd:29: Escaped LaTeX specials: \_ \_
checkRd: (-1) connectedSets.Rd:31: Escaped LaTeX specials: \_ \_
checkRd: (-1) maxConnectedSet.Rd:35: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:37: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:39: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:41: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:45: Escaped LaTeX specials: \_ \_ \_ \_ \_ \_ \_ \_ \_ \_
checkRd: (-1) maxConnectedSet.Rd:47: Escaped LaTeX specials: \_ \_
Maintainer: ‘Hannah Meyer <hannah.v.meyer@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Janez Komelj <jkomelj@siol.net>’

The Description field contains
  <doi:10.4236/ajcm.2023.134026> (or reprint <arXiv:2312.00011> with
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ursula Neumann <ursula.neumann@uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nikolas",
                      family = "Rothe",
                      role = "aut"),
               person(given = "Ursula",
                      family = "Neumann",
                      role = c("aut", "cre"),
                      email = "ursula.neumann@uni-marburg.de"))
as necessary.
Maintainer: ‘John E. Kolassa <kolassa@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "E."),
                      family = "Kolassa",
                      role = c("aut", "cre"),
                      email = "kolassa@stat.rutgers.edu"),
               person(given = "Juan",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘df_to_tier.R’
Maintainer: ‘Daniel R. McCloy <drmccloy@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "R."),
                    family = "McCloy",
                    role = c("aut", "cre"),
                    email = "drmccloy@uw.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘indo.Rd’:
    http://dx.doi.org/10.1121/1.4870068
  File ‘normVowels.Rd’:
    http://dx.doi.org/10.1016/0378-5955(90)90170-T
    http://dx.doi.org/10.1121/1.1912396
    http://dx.doi.org/10.1121/1.399849
  File ‘repulsiveForce.Rd’:
    http://dx.doi.org/10.1177/0023830914559234
    http://dx.doi.org/10.1145/378456.378457
Maintainer: ‘Santiago Barreda <sbarreda@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Santiago",
                    family = "Barreda",
                    role = c("aut", "cre"),
                    email = "sbarreda@ucdavis.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bake-par.R’ ‘bake.R’ ‘calculated-parameters.R’ ‘conductance.R’
    ‘constants.R’ ‘enviro-par.R’ ‘fit_aq_response.R’
    ‘fit_aq_response2.Rd’ ‘fit_photosynthesis.R’ ‘fit_r_light.R’
    ‘fit_r_light2.Rd’ ‘leaf-par.R’ ‘make_parameters.R’ ‘models.R’
    ‘parameter_names.R’ ‘photosynthesis.R’ ‘read_licor.R’
    ‘simulate_error.R’ ‘simulate_error.Rd’ ‘utils.R’
Maintainer: ‘Jennifer Pohle <jennifer.pohle@uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jennifer",
                    family = "Pohle",
                    role = c("aut", "cre"),
                    email = "jennifer.pohle@uni-bielefeld.de")
as necessary.

The Description field contains
  hidden semi-Markov models. <arXiv:2101.09197>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Caterina Pisani <caterina.pisani@unisi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Caterina",
                    family = "Pisani",
                    role = c("aut", "cre"),
                    email = "caterina.pisani@unisi.it")
as necessary.
checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ?
Maintainer: ‘John R. Stevens <john.r.stevens@usu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("J.", "Conrad"),
                      family = "Stack",
                      role = "aut"),
               person(given = c("John", "R."),
                      family = "Stevens",
                      role = "cre",
                      email = "john.r.stevens@usu.edu"))
as necessary.
Maintainer: ‘Pedro Tarroso <ptarroso@cibio.up.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pedro",
                      family = "Tarroso",
                      role = c("aut", "cre"),
                      email = "ptarroso@cibio.up.pt"),
               person(given = "Guillermo",
                      family = "Velo-Anton",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Carvalho",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Francois Michonneau <francois.michonneau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("R", "Hackathon", "et"),
                      family = "al.",
                      role = "aut",
                      comment = "alphabetically: Ben Bolker, Marguerite Butler,\n    Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut\n    Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara,\n    Emmanuel Paradis, Jim Regetz, Derrick Zwickl"),
               person(given = "Francois",
                      family = "Michonneau",
                      role = "cre",
                      email = "francois.michonneau@gmail.com"))
as necessary.
Maintainer: ‘Shaun Wilkinson <shaunpwilkinson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ramon Diaz-Uriarte <rdiaz02@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ramon",
                      family = "Diaz-Uriarte",
                      role = c("aut", "cre"),
                      email = "rdiaz@cnio.es"),
               person(given = "Theodore",
                      family = "Garland",
                      role = "aut"),
               person(family = "Jr",
                      role = "aut",
                      email = "theodore.garland@ucr.edu"))
as necessary.
checkRd: (-1) GarlandJanis.IC.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.IC.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.Original.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.Original.Rd:6: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:3: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) GarlandJanis.varcov.Rd:7: Escaped LaTeX specials: \&
Maintainer: ‘Xia Hua <xia.hua@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xia",
                      family = "Hua",
                      role = c("aut", "cre"),
                      email = "xia.hua@anu.edu.au"),
               person(given = "Lindell",
                      family = "Bromham",
                      role = "aut",
                      email = "lindell.bromham@anu.edu.au"))
as necessary.
Maintainer: ‘Julia Fukuyama <julia.fukuyama@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julia",
                    family = "Fukuyama",
                    role = c("aut", "cre"),
                    email = "julia.fukuyama@gmail.com")
as necessary.
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Keck",
                    role = c("aut", "cre"),
                    email = "francois.keck@gmail.com")
as necessary.
Maintainer: ‘Daniel Beer <dlbeer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Beer",
                      role = c("aut", "cre"),
                      email = "dlbeer@gmail.com"),
               person(given = "Anusha",
                      family = "Beer",
                      role = "aut"))
as necessary.
Maintainer: ‘Alan Grafen <alan.grafen@sjc.ox.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Grafen",
                    role = c("aut", "cre"),
                    email = "alan.grafen@sjc.ox.ac.uk")
as necessary.
Found the following significant warnings:
  cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘J. Dustin Tracy <tracy@chapman.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("J.", "Dustin"),
                      family = "Tracy",
                      role = c("aut", "cre"),
                      email = "tracy@chapman.edu"),
               person(given = "Zhiyi",
                      family = "Xu",
                      role = "aut"),
               person(given = "Sari",
                      family = "Acra",
                      role = "aut"),
               person(given = c("Kong", "Y."),
                      family = "Chen",
                      role = "aut"),
               person(given = c("Maciej", "S."),
                      family = "Buchowski",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Donnelly",
                      role = "aut"))
as necessary.
checkRd: (-1) pa-internal.Rd:11: Lost braces
    11 | code{l2df}: convert list to data.frame
       |     ^
checkRd: (-1) pa-internal.Rd:14: Lost braces
    14 | code{convertTZ}: force a new timezone on datetime
       |     ^
checkRd: (-1) pa-internal.Rd:16: Lost braces
    16 | code{createTime}: create datetime variable
       |     ^
checkRd: (-1) pa-internal.Rd:18: Lost braces
    18 | code{addDayIndex}: create ID_day variable from timestamp
       |     ^
Maintainer: ‘Steven W. Kembel <steve.kembel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Steven", "W."),
                      family = "Kembel",
                      role = c("aut", "cre"),
                      email = "steve.kembel@gmail.com"),
               person(given = c("David", "D."),
                      family = "Ackerly",
                      role = "aut",
                      email = "dackerly@berkeley.edu"),
               person(given = c("Simon", "P."),
                      family = "Blomberg",
                      role = "aut",
                      email = "s.blomberg1@uq.edu.au"),
               person(given = c("Will", "K."),
                      family = "Cornwell",
                      role = "aut",
                      email = "cornwell@zoology.ubc.ca"),
               person(given = c("Peter", "D."),
                      family = "Cowan",
                      role = "aut",
                      email = "pdc@berkeley.edu"),
               person(given = c("Matthew", "R."),
                      family = "Helmus",
                      role = "aut",
                      email = "mrhelmus@wisc.edu"),
               person(given = "Helene",
                      family = "Morlon",
                      role = "aut",
                      email = "morlon.helene@gmail.com"),
               person(given = c("Campbell", "O."),
                      family = "Webb",
                      role = "aut",
                      email = "cwebb@oeb.harvard.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) IvesGodfray.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IvesGodfray.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) IvesGodfray.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Kcalc.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) phylocom.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylocom.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylocom.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) phylosignal.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) sample2matrix.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sample2matrix.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sample2matrix.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) traitgram.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) utility.Rd:37: Escaped LaTeX specials: \$ \$
Maintainer: ‘Chun Pan <chunpan2003@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chun",
                    family = "Pan",
                    role = c("aut", "cre"),
                    email = "chunpan2003@hotmail.com")
as necessary.
Maintainer: ‘Matt Deppe <deppemj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Deppe",
                    role = c("aut", "cre"),
                    email = "deppemj@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘exr-read.R’ ‘exr-types-read.R’ ‘exr-write.R’ ‘utils.R’
Maintainer: ‘Andrew G. Chapple <agc6@rice.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G."),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "agc6@rice.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘piecenorm.R’
Specified C++11: please drop specification unless essential
Maintainer: ‘Marco Blume <marco.blume@pinnaclesports.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Blume",
                      role = c("aut", "cre"),
                      email = "marco.blume@pinnaclesports.com"),
               person(given = "Michael",
                      family = "Yan",
                      role = "aut"))
as necessary.
Maintainer: ‘Danilo Freire <danilofreire@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Brenton M. Wiernik [cre, aut] (<https://orcid.org/0000-0001-9560-6336>, @bmwiernik)’
  Authors@R: ‘Brenton M. Wiernik [cre, aut] (ORCID: <https://orcid.org/0000-0001-9560-6336>, Twitter: @bmwiernik)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aliases.Rd’ ‘bind.Rd’
Maintainer: ‘Michael Sweeting <mjs212@medschl.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Sweeting",
                    role = c("aut", "cre"),
                    email = "mjs212@medschl.cam.ac.uk")
as necessary.
Maintainer: ‘Sahil Seth <me@sahilseth.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Houston", "R"),
                      family = "Users",
                      role = "aut"),
               person(given = "Neeraj",
                      family = "Tandon",
                      role = "aut"),
               person(given = "Ed",
                      family = "Goodwin",
                      role = "aut"),
               person(given = c("Ju", "Yeong"),
                      family = "Kim",
                      role = "aut"),
               person(given = "Sahil",
                      family = "Seth",
                      role = c("aut", "cre"),
                      email = "me@sahilseth.com"))
as necessary.
Maintainer: ‘Alex Ioannides <alex.ioannides@yahoo.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Ioannides",
                    role = c("aut", "cre"),
                    email = "alex.ioannides@yahoo.co.uk")
as necessary.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Maintainer: ‘Lars Van Cutsem <lars.vancutsem@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lars",
                    family = "Van Cutsem",
                    role = c("aut", "cre"),
                    email = "lars.vancutsem@hotmail.com")
as necessary.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Duncan",
                      family = "Garmonsway",
                      role = "ctb"),
               person(given = "Colin",
                      family = "Hirsch",
                      role = "cph"),
               person(given = "Daniel",
                      family = "Frey",
                      role = "cph"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Leonardo Egidi <legidi@units.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leonardo",
                      family = "Egidi",
                      role = c("aut", "cre"),
                      email = "legidi@units.it"),
               person(given = "Roberta",
                      family = "Pappadà",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Pauli",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Torelli",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘extract_col.Rd’ ‘na2empty.Rd’ ‘omit_na_cols.Rd’ ‘omit_na_rows.Rd’
    ‘pivot.R’ ‘pivot.Rd’ ‘utils.R’ ‘validate_col.Rd’
Maintainer: ‘Martin Stingl <martin.stingl@dfv.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Stingl",
                    role = c("aut", "cre"),
                    email = "martin.stingl@dfv.de")
as necessary.
checkRd: (-1) get_pixels.Rd:27-29: Lost braces
    27 | if (interactive()) {
       |                    ^
checkRd: (-1) sprinkle_colnames.Rd:26-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sprinkle_colnames.Rd:29-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:63-68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:69-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:74-77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_levels_labels.Rd:78-83: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eun-Kyung",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "lee.eunk@gmail.com"),
               person(given = "Hye-sun",
                      family = "Cho",
                      role = "aut"))
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘buildPackageGraph.Rd’ ‘collectFunNames.Rd’ ‘functions.r’
    ‘plotPackageGraph.Rd’ ‘utils.r’
Maintainer: ‘Meta-Lina Spohn <metalina.spohn@stat.math.ethz.ch>’

The Description field contains
  Michel et al. (2021) <arXiv:2109.10150>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Francois Deslandes <francois.deslandes@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jade",
                      family = "Giguelay",
                      role = "aut"),
               person(given = "Francois",
                      family = "Deslandes",
                      role = "cre",
                      email = "francois.deslandes@inra.fr"))
as necessary.
Maintainer: ‘Thomas Jaki <jaki.thomas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Jaki",
                      role = c("aut", "cre"),
                      email = "jaki.thomas@gmail.com"),
               person(given = c("Martin", "J."),
                      family = "Wolfsegger",
                      role = "aut",
                      email = "wolfseggerm@gmx.at"))
as necessary.
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kyun-Seop",
                      family = "Bae",
                      role = c("aut", "cre"),
                      email = "k@acr.kr"),
               person(given = c("Jee", "Eun"),
                      family = "Lee",
                      role = "aut"))
as necessary.
Maintainer: ‘Nan-Hung Hsieh <d99622005@ntu.edu.tw>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Davi Castro-Tavares <davi.tavares@leibniz-zmt.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Erick Marroquin <ericksuhel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erick",
                    family = "Marroquin",
                    role = c("aut", "cre"),
                    email = "ericksuhel@gmail.com")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘User_manual_for_planningML.Rmd’ using rmarkdown

Quitting from User_manual_for_planningML.Rmd:161-165 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `auc()`:
! length(x) == length(unique(x)) is not TRUE
---
Backtrace:
    ▆
 1. └─planningML::samplesize(...)
 2.   └─base::replicate(...)
 3.     └─base::sapply(...)
 4.       └─base::lapply(X = X, FUN = FUN, ...)
 5.         └─planningML (local) FUN(X[[i]], ...)
 6.           └─planningML (local) HCT.simulation(...)
 7.             └─MESS::auc(x = 1 - TNR.grid, y = TPR.grid, type = "spline")
 8.               └─base::stopifnot(length(x) == length(unique(x)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'User_manual_for_planningML.Rmd' failed with diagnostics:
length(x) == length(unique(x)) is not TRUE
--- failed re-building ‘User_manual_for_planningML.Rmd’

SUMMARY: processing the following file failed:
  ‘User_manual_for_planningML.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Dan Kelley <Dan.Kelley@Dal.Ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Kelley",
                      role = c("aut", "cre"),
                      email = "Dan.Kelley@Dal.Ca"),
               person(given = "Frank",
                      family = "Schmitt",
                      role = "aut",
                      email = "frankschmitt@gmx.de"))
as necessary.
Maintainer: ‘Yves Rozenholc <yves.rozenholc@parisdescartes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yves",
                      family = "Rozenholc",
                      role = c("aut", "cre"),
                      email = "yves.rozenholc@parisdescartes.fr"),
               person(given = "Nicolas",
                      family = "Pécuchet",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Laurent-Puig",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘P2Run.csv’ ‘P2Run.html’ ‘P2Run.png’
checkRd: (-1) one_design.Rd:125-126: Lost braces
   125 | function serves for the purpose of spot-testing for any pre-specified {n,
       |                                                                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘VDJ_build.R’
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alec",
                      family = "Stephenson",
                      role = c("aut", "cre"),
                      email = "alec_stephenson@hotmail.com"),
               person(given = "Jeff",
                      family = "Sonas.",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_season_form.R’
Maintainer: ‘JungJun Lee <ljjoj@korea.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "JungJun",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "ljjoj@korea.ac.kr"),
               person(given = "Jae-Hwan",
                      family = "Jhong",
                      role = "aut"),
               person(given = "Young-Rae",
                      family = "Cho",
                      role = "aut"),
               person(given = "SungHwan",
                      family = "Kim",
                      role = "aut"),
               person(given = "Ja-yong",
                      family = "Koo",
                      role = "aut"))
as necessary.
Maintainer: ‘Jason Sinnwell <sinnwell.jason@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "J"),
                      family = "Schaid",
                      role = "aut"),
               person(given = "Jason",
                      family = "Sinnwell",
                      role = "cre",
                      email = "sinnwell.jason@mayo.edu"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pleiotest.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Dhammapal Bharne <dhammapalb@uohyd.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dhammapal",
                      family = "Bharne",
                      role = c("aut", "cre"),
                      email = "dhammapalb@uohyd.ac.in"),
               person(given = "Vaibhav",
                      family = "Vindal",
                      role = "aut"))
as necessary.
Maintainer: ‘Robert B. Gramacy <rbg@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "B."),
                    family = "Gramacy",
                    role = c("aut", "cre"),
                    email = "rbg@vt.edu")
as necessary.

The Description field contains
  (PL) following Gramacy & Polson (2011) <arXiv:0909.5262>.  The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
'library' or 'require' call not declared from: ‘MASS’
checkRd: (-1) check_hwe.Rd:103: Lost braces; missing escapes or markup?
   103 | {'ALL', 'AFF', 'UNAFF', 'ALL(QT)', 'ALL(NP)'}), A1 (Allele 1; usually minor),
       | ^
Maintainer: ‘Jonathan P. Weeks <weeksjp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jonathan", "P."),
                    family = "Weeks",
                    role = c("aut", "cre"),
                    email = "weeksjp@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhi Wei <zhiwei04@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Zhi", "Wei", "&", "Wenguang"),
                      family = "Sun",
                      role = "aut"),
               person(given = "Zhi",
                      family = "Wei",
                      role = "cre",
                      email = "zhiwei04@gmail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PLmixed-package.Rd: lme4, optimx
  PLmixed.Rd: lme4, glmer, optimx, lmerControl, glmerControl, lmer
  coef.PLmod.Rd: coef.merMod
  fitted.PLmod.Rd: fitted.merMod
  fixef.PLmod.Rd: fixef.merMod
  plot.PLmod.Rd: plot.merMod
  predict.PLmod.Rd: predict.merMod
  ranef.PLmod.Rd: ranef.merMod
  residuals.PLmod.Rd: residuals.merMod
  simulate.PLmod.Rd: simulate.merMod
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Euloge Clovis Kenne Pagui <kenne@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Euloge", "Clovis", "Kenne"),
                      family = "Pagui",
                      role = c("aut", "cre"),
                      email = "kenne@stat.unipd.it"),
               person(given = "Antonio",
                      family = "Canale",
                      role = "aut"),
               person(given = "Alan",
                      family = "Genz",
                      role = "ctb"),
               person(given = "Adelchi",
                      family = "Azzalini",
                      role = "ctb"))
as necessary.
checkRd: (-1) delta2a.Rd:21: Lost braces; missing escapes or markup?
    21 | delta_k = log(a_k - a_{k+1})
       |                       ^
checkRd: (-1) ordprob.mple.Rd:29: Lost braces
    29 | logical. If code{TRUE} all the q variable are assumed to have the same mean.
       |                 ^
Maintainer: ‘Takahiko Koizumi <takahiko.koizumi@riken.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takahiko",
                      family = "Koizumi",
                      role = c("aut", "cre"),
                      email = "takahiko.koizumi@riken.jp"),
               person(given = "Kenta",
                      family = "Suzuki",
                      role = "aut"),
               person(given = "Yasunori",
                      family = "Ichihashi",
                      role = "aut"))
as necessary.
Maintainer: ‘Olivia Cheronet <cheronetolivia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Olivia",
                    family = "Cheronet",
                    role = c("aut", "cre"),
                    email = "cheronetolivia@gmail.com")
as necessary.
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(plotDK)
  > 
  > test_check("plotDK")
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 48 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plotDK.R:67:5'): The returned plot has the correct labels ────
  c("x", "y", "group", "subgroup", "text", "fill") (`actual`) and names(labels) (`expected`) don't have the same values.
  * Only in `actual`: "x", "y", "group", "subgroup", "text", "fill"
  
  ── Failure ('test-plotDK.R:72:5'): The returned plot has the correct labels ────
  labels$fill not equal to "test_label".
  target is NULL, current is character
  ── Failure ('test-plotDK.R:81:5'): The returned plot has the correct labels ────
  labels$fill not equal to "fill".
  target is NULL, current is character
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 48 ]
  Error: Test failures
  Execution halted
checkRd: (-1) add_bars.Rd:15: Lost braces
    15 | When \\code{y0} is not specified, the lowest value of the y-axis is used.}
       |            ^
checkRd: (-1) add_bars.Rd:24: Lost braces
    24 | \\code{\\link[graphics]{par}}.}
       |       ^
checkRd: (-1) add_bars.Rd:24: Lost braces
    24 | \\code{\\link[graphics]{par}}.}
       |                        ^
checkRd: (-1) plotluck.Rd:129: Lost braces
   129 |  in factors are are shown as a special factor level code{"?"}. They can be
       |                                                         ^
Maintainer: ‘Stephen Milborrow <milbo@sonic.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Milborrow",
                    role = c("aut", "cre"),
                    email = "milbo@sonic.net")
as necessary.
Maintainer: ‘Joaquin Bienvenido Ordieres Mere <j.ordieres@upm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Javier", "Celigueta"),
                      family = "Mu<b1>oz",
                      role = "aut",
                      email = "b1"),
               person(given = c("Joaquin", "Bienvenido", "Ordieres"),
                      family = "Mere",
                      role = "cre",
                      email = "j.ordieres@upm.es"))
as necessary.
Maintainer: ‘Yao Geng <gengyao0103521@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yao",
                      family = "Geng",
                      role = "cre",
                      email = "gengyao0103521@qq.com"))
as necessary.
checkRd: (-1) domain_data.Rd:29: Lost braces
    29 | code{\link{help}}
       |     ^
checkRd: (-1) length_data.Rd:32: Lost braces
    32 | code{\link{help}}
       |     ^
checkRd: (-1) plotdomain.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotmutagensis.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotprotein-package.Rd:20: Lost braces
    20 | code{\link{help}}
       |     ^
checkRd: (-1) plotprotein.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotsite.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) site_data.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Maintainer: ‘January Weiner <january.weiner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "January",
                    family = "Weiner",
                    role = c("aut", "cre"),
                    email = "january.weiner@gmail.com")
as necessary.
Maintainer: ‘Felipe Queiroz <ffelipeq@outlook.com>’

The Description field contains
  are described in Queiroz and Ferrari (2022) <arXiv:2202.01697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ana Lopez-Cheda <ana.lopez.cheda@udc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("German", "Aneiros"),
                      family = "Perez",
                      role = "aut"),
               person(given = "Ana",
                      family = "Lopez-Cheda",
                      role = c("aut", "cre"),
                      email = "ana.lopez.cheda@udc.es"))
as necessary.
Maintainer: ‘Ghislain Durif <gd.dev@libertymail.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne-Laure",
                      family = "Boulesteix",
                      role = "aut",
                      email = "boulesteix@ibe.med.uni-muenchen.de"),
               person(given = "Ghislain",
                      family = "Durif",
                      role = c("aut", "cre"),
                      email = "gd.dev@libertymail.net"),
               person(given = "Sophie",
                      family = "Lambert-Lacroix",
                      role = "aut",
                      email = "sophie.lambert-lacroix@univ-grenoble-alpes.fr"),
               person(given = "Julie",
                      family = "Peyre",
                      role = "aut",
                      email = "Julie.Peyre@univ-grenoble-alpes.fr"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut",
                      email = "k.strimmer@imperial.ac.uk"))
as necessary.
Maintainer: ‘Shunyao Wu <wushunyao@qdu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shunyao",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "wushunyao@qdu.edu.cn"),
               person(given = "Qi",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Zhiruo",
                      family = "Li",
                      role = "aut"),
               person(given = "Hua",
                      family = "Liang",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PLSiMCpp.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eva", "Herrmann;", "R", "interface", "etc", "by", "Martin"),
                      family = "Maechler",
                      role = "aut",
                      email = "eherrmann@mathematik.tu-darmstadt.de",
                      comment = "C original"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "cre",
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plug.R’
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Hadley",
                      family = "Wickham",
                      role = "aut"))
as necessary.
checkRd: (-1) plu_more.Rd:16: Lost braces; missing escapes or markup?
    16 | Additional arguments are replaced with "{n} more".
       |                                         ^
Maintainer: ‘Michael Doyle <michaeledoyle7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Doyle",
                    role = c("aut", "cre"),
                    email = "michaeledoyle7@gmail.com")
as necessary.
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) PMCMR-deprecated.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMR-deprecated.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘earned_value.R’ ‘planned_value.R’ ‘pmevR6.R’
Maintainer: ‘Johan Dahlin <uni@johandahlin.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johan",
                    family = "Dahlin",
                    role = c("aut", "cre"),
                    email = "uni@johandahlin.com")
as necessary.
checkRd: (-1) pmledecon.Rd:113: Lost braces; missing escapes or markup?
   113 |     likelihood less than $10^{-10}$ are replaced by $10^{-10}$.
       |                              ^
checkRd: (-1) pmledecon.Rd:113: Lost braces; missing escapes or markup?
   113 |     likelihood less than $10^{-10}$ are replaced by $10^{-10}$.
       |                                                         ^
Maintainer: ‘Dmitriy Bolotov <rpmmlsupport@softwareag.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tridivesh",
                      family = "Jena",
                      role = "aut"),
               person(given = c("Wen", "Ching"),
                      family = "Lin",
                      role = "aut"),
               person(given = "Dmitriy",
                      family = "Bolotov",
                      role = c("aut", "cre"),
                      email = "rpmmlsupport@softwareag.com"))
as necessary.
Maintainer: ‘Paul H. Lee <honglee@graduate.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "H."),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "honglee@graduate.hku.hk"),
               person(given = c("Philip", "L.", "H."),
                      family = "Yu",
                      role = "aut"))
as necessary.
checkRd: (-1) ahp.Rd:16: Lost braces; missing escapes or markup?
    16 | an ``A'' matrix. It should be a square matrix with diagonal values equal 1 and $a_{ij} = 1/a_{ij}$.
       |                                                                                   ^
checkRd: (-1) ahp.Rd:16: Lost braces; missing escapes or markup?
    16 | an ``A'' matrix. It should be a square matrix with diagonal values equal 1 and $a_{ij} = 1/a_{ij}$.
       |                                                                                              ^
Maintainer: ‘Alexander Davis <ajdavis2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Davis",
                    role = c("aut", "cre"),
                    email = "ajdavis2@mdanderson.org")
as necessary.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
Maintainer: ‘Jake Lawlor <jakealawlor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Lawlor",
                    role = c("aut", "cre"),
                    email = "jakealawlor@gmail.com")
as necessary.
Maintainer: ‘Hector Haffenden <haffendenh@cardiff.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hector",
                    family = "Haffenden",
                    role = c("aut", "cre"),
                    email = "haffendenh@cardiff.ac.uk")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Dabao Zhang <zhangdb@purdue.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dabao",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangdb@purdue.edu"),
               person(given = "Zhongli",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Zeyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yu-ting",
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘"Brewer, Ben (arb5mt)" <arb5mt@virginia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nolan", "A."),
                      family = "Wages",
                      role = "aut"),
               person(family = "\"Brewer",
                      role = "cre"),
               person(family = "Ben\"",
                      role = "cre",
                      email = "arb5mt@virginia.edu",
                      comment = "arb5mt"))
as necessary.
Maintainer: ‘Markus Boenn <markus.boenn.sf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Boenn",
                    role = c("aut", "cre"),
                    email = "markus.boenn.sf@gmail.com",
                    comment = "State Office for Consumer Protection Saxony-Anhalt, Germany")
as necessary.
Maintainer: ‘Martina Mincheva <m.z.mincheva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jianqing",
                      family = "Fan",
                      role = "aut"),
               person(given = "Yuan",
                      family = "Liao",
                      role = "aut"),
               person(given = "Martina",
                      family = "Mincheva",
                      role = c("aut", "cre"),
                      email = "m.z.mincheva@gmail.com"))
as necessary.
Maintainer: ‘Michaela Dvorzak <m.dvorzak@gmx.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
Maintainer: ‘Daniela Witten <dwitten@u.washington.edu>’

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  Authors@R: person(given = "Daniela",
                    family = "Witten",
                    role = c("aut", "cre"),
                    email = "dwitten@u.washington.edu")
as necessary.
Maintainer: ‘Paul Evangelista <paul.evangelista@westpoint.edu>’

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  Authors@R: c(person(given = "\"Paul",
                      family = "Evangelista",
                      role = "aut",
                      email = "paul.evangelista@westpoint.edu"),
               person(given = "Dave",
                      family = "Beskow\"",
                      role = "aut",
                      email = "david.beskow@westpoint.edu"),
               person(given = "Paul",
                      family = "Evangelista",
                      role = "cre",
                      email = "paul.evangelista@westpoint.edu"))
as necessary.
Maintainer: ‘Patrick Schmidt <pschmidte@gmail.com>’

The Description field contains
  Katzfuss and Gneiting (2015) <arXiv:1506.01917> for more details on the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) estimate.functional.Rd:34: Lost braces; missing escapes or markup?
    34 | \item{bw}{function describing bandwidth selection (see ?gmm for alternatives). Standard is that the bandwidth depends on the sample length $T$ by $m(T)=T^{1/5}$.}
       |                                                                                                                                                           ^
Maintainer: ‘Marieke van der Maaten-Theunissen <marieke.theunissen@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marieke",
                      family = "van der Maaten-Theunissen",
                      role = c("aut", "cph", "cre", "trl"),
                      email = "marieke.theunissen@tu-dresden.de"),
               person(given = "Ernst",
                      family = "van der Maaten",
                      role = c("aut", "trl")),
               person(given = "Gottfried",
                      family = "Jetsckhe",
                      role = c("aut", "trl")),
               person(given = "Mario",
                      family = "Trouillier",
                      role = c("aut", "trl")))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

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  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rachel",
                      family = "Nordgren",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yiran",
                      family = "Hu",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘David Kahle <david@kahle.io>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) pois.fe.robust.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pois.fe.robust.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pois.fe.robust.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pois.fe.robust.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

The Description field contains
  bag-of-words-based topic modeling) (Cortes, (2018) <arXiv:1811.01908>),
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yaru",
                      family = "Shi",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Anup",
                      family = "Amatya",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Toby Kenney <tkenney@mathstat.dal.ca>’

The Description field contains
  Kenney, T. Huang, H. Gu (2019) <arXiv:1904.11745>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Pechel Cactcha <davidpechel@uy1.uninet.cm>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = c("David", "Pechel"),
                      family = "Cactcha",
                      role = c("aut", "cre"),
                      email = "davidpechel@uy1.uninet.cm"),
               person(given = c("Laure", "Pauline"),
                      family = "Fotso",
                      role = "aut"),
               person(given = c("Celestin", "C"),
                      family = "Kokonendji",
                      role = "aut"))
as necessary.
Maintainer: ‘Drew Linzer <drew@votamatic.org>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Drew",
                      family = "Linzer",
                      role = c("aut", "cre"),
                      email = "drew@votamatic.org"),
               person(given = "Jeffrey",
                      family = "Lewis.",
                      role = "aut",
                      email = "jblewis@ucla.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) carcinoma.Rd:8: Escaped LaTeX specials: \&
checkRd: (-1) poLCA.Rd:63: Escaped LaTeX specials: \&
checkRd: (-1) poLCA.Rd:69: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pp_measures.Rd: diversity
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Barry Edwards <barry.edwards@ucf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Barry",
                      family = "Edwards",
                      role = c("aut", "cre"),
                      email = "barry.edwards@ucf.edu"),
               person(given = "Philip",
                      family = "Pollock",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hiperfrac.R’ ‘rice.R’
Maintainer: ‘Jakub Nowosad <nowosad.jakub@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘John D. Johnson <john.d.johnson@marquette.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "D."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "john.d.johnson@marquette.edu")
as necessary.
Error(s) in re-building vignettes:
  ...
--- re-building ‘crosstab3way.Rmd’ using rmarkdown

Quitting from crosstab3way.Rmd:40-54 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::labels> object is invalid:
- every label must be named.
---
Backtrace:
    ▆
 1. └─ggplot2::labs(...)
 2.   └─ggplot2::class_labels(args)
 3.     └─S7::new_object(labels)
 4.       └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'crosstab3way.Rmd' failed with diagnostics:
<ggplot2::labels> object is invalid:
- every label must be named.
--- failed re-building ‘crosstab3way.Rmd’

--- re-building ‘crosstabs.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘crosstabs.Rmd’

--- re-building ‘toplines.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘toplines.Rmd’

SUMMARY: processing the following file failed:
  ‘crosstab3way.Rmd’

Error: Vignette re-building failed.
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hits.R’ ‘size.R’ ‘utils.R’
Maintainer: ‘Conrad Burden <conrad.burden@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conrad",
                    family = "Burden",
                    role = c("aut", "cre"),
                    email = "conrad.burden@anu.edu.au")
as necessary.

The Description field contains
  Conrad J. Burden (2014) <arXiv:1406.2780>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Roeland E. Voorrips <roeland.voorrips@wur.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roeland", "E."),
                    family = "Voorrips",
                    role = c("aut", "cre"),
                    email = "roeland.voorrips@wur.nl")
as necessary.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bill",
                      family = "Venables",
                      role = c("aut", "cre"),
                      email = "bill.venables@gmail.com"),
               person(given = c("with", "contribution", "by", "Kurt"),
                      family = "Hornik",
                      role = "aut"),
               person(given = "Georgi",
                      family = "Boshnakov",
                      role = "aut"),
               person(given = "Brian",
                      family = "Ripley.",
                      role = "aut"))
as necessary.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alexander Zwart <Alec.Zwart@csiro.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Zwart",
                    role = c("aut", "cre"),
                    email = "alec.zwart@csiro.au")
as necessary.
checkRd: (-1) inputData.Rd:94: Lost braces
    94 | recommend using either \sQuote{code{.}} (a period) or
       |                                    ^
checkRd: (-1) inputData.Rd:95: Lost braces
    95 | \sQuote{code{_}} (an underscore) rather than a space.
       |             ^
checkRd: (-1) preprocessData.Rd:81: Lost braces
    81 | recommend using either \sQuote{code{.}} (a period) or
       |                                    ^
checkRd: (-1) preprocessData.Rd:82: Lost braces
    82 | \sQuote{code{_}} (an underscore) rather than a space.
       |             ^
checkRd: (-1) stat_quantile_prob.Rd:14: Lost braces; missing escapes or markup?
    14 | Number {25, 50, 75}
       |        ^
Maintainer: ‘Norm Matloff <matloff@cs.ucdavis.edu>’

The Description field contains
  Matloff, and Pete Mohanty (<arXiv:1806.06850>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Baker <p.baker1@uq.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) calculateDIC.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) calculateDIC.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) polySegratioMM-package.Rd:70-72: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘test-data.R’ ‘test-inits.R’ ‘test.bug’ ‘test.cmd’
Maintainer: ‘Peter Baker <p.baker1@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Baker",
                    role = c("aut", "cre"),
                    email = "p.baker1@uq.edu.au")
as necessary.
Maintainer: ‘Sourav Chatterjee <souravc@stanford.edu>’

The Description field contains
  Vidyasagar (2022) <arxiv:2209.07028>. The method is fully
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Junghi Kim <junghikim0@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junghi",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "junghikim0@gmail.com"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘Cyril Piou <cyril.piou@cirad.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Pomic-package.Rd’:
    http://dx.doi.org/10.1016/j.ecolmodel.2009.05.003
Maintainer: ‘Seyma Kalay <seymakalay@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seyma",
                    family = "Kalay",
                    role = c("aut", "cre"),
                    email = "seymakalay@hotmail.com")
as necessary.
checkRd: (-1) MLM_Model.Rd:31: Lost braces; missing escapes or markup?
    31 |   the weight vectors \bold{{w}^{i}} corresponds to class \eqn{i}{i}.
       |                                ^
checkRd: (-1) MLM_Model.Rd:33: Lost braces; missing escapes or markup?
    33 | We set \eqn{{\bold{{w}}^{h}} = 0} and the parameters to be learned are the weight vectors \bold{{w}^{i}}
       |                                                                                                     ^
Maintainer: ‘Gavin Douglas <gavinmdouglas@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "charlie@stat.umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forceLocus.Rd: forcePool
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Chris Salahub <chris.salahub@uwaterloo.ca>’

The Description field contains
  in Salahub and Olford (2023) <arXiv:2310.16600>. This package provides
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Lech Kujawski <lech.kujawski@ug.edu.pl>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PooledMeanGroup-package.Rd’:
    \keyword{package, PMG, pooled mean group, dynamic  [TRUNCATED]
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘getPrevalence.R’
Maintainer: ‘Stefano Nembrini <stefanonembrini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stefano",
                    family = "Nembrini",
                    role = c("aut", "cre"),
                    email = "stefanonembrini@gmail.com")
as necessary.
Maintainer: ‘Chris Stubben <chris.stubben@hci.utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Stubben",
                      role = c("aut", "cre"),
                      email = "chris.stubben@hci.utah.edu"),
               person(given = "Brook",
                      family = "Milligan",
                      role = "aut"),
               person(given = "Patrick",
                      family = "Nantel",
                      role = "aut"))
as necessary.
Maintainer: ‘Aki Jarl Laruson <akijarl@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aki", "Jarl", "Laruson;", "Floyd"),
                      family = "Reed",
                      role = "aut"),
               person(given = c("Aki", "Jarl"),
                      family = "Laruson",
                      role = "cre",
                      email = "akijarl@gmail.com"))
as necessary.
Maintainer: ‘Jiacheng Miao <jiacheng.miao@wisc.edu>’

The Description field contains
  (2023) <arXiv:2311.14220>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Running ‘testthat.R’ [20s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(PopPsiSeqR)
  > 
  > test_check("PopPsiSeqR")
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 9 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plot.R:26:5'): returns a plot ────────────────────────────────
  Expected `mock.plot <- windowedFrequencyShift.plotter(mock_data)` to run without any errors.
  i Actually got a <simpleError> with text:
    invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
  ── Error ('test-plot.R:27:5'): returns a plot ──────────────────────────────────
  Error in `eval(code, test_env)`: object 'mock.plot' not found
  Backtrace:
      ▆
   1. ├─testthat::expect_true(ggplot2::is.ggplot(mock.plot@ggplot)) at test-plot.R:27:5
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─ggplot2::is.ggplot(mock.plot@ggplot)
   5.   └─ggplot2::is_ggplot(x)
   6.     └─S7::S7_inherits(x, class_ggplot)
  
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 9 ]
  Error: Test failures
  Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘PopPsiSeq_and_Helpers.Rmd’ using rmarkdown

Quitting from PopPsiSeq_and_Helpers.Rmd:120-124 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `validObject()`:
! invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
---
Backtrace:
     x
  1. +-ggplot2::autoplot(...)
  2. \-ggbio::autoplot(...)
  3.   \-ggbio (local) .local(object, ...)
  4.     +-BiocGenerics::do.call(ggplot, c(list(data = object), list(aes.res)))
  5.     +-base::do.call(ggplot, c(list(data = object), list(aes.res)))
  6.     +-ggplot2 (local) `<fn>`(data = `<GRanges>`, `<ggplt2::>`)
  7.     \-ggbio:::ggplot.Vector(data = `<GRanges>`, `<ggplt2::>`)
  8.       \-ggbio::GGbio(gg, data = data)
  9.         +-BiocGenerics::do.call(...)
 10.         +-base::do.call(...)
 11.         \-methods (local) `<fn>`(...)
 12.           +-methods::initialize(value, ...)
 13.           \-methods::initialize(value, ...)
 14.             \-methods::validObject(.Object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'PopPsiSeq_and_Helpers.Rmd' failed with diagnostics:
invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
--- failed re-building ‘PopPsiSeq_and_Helpers.Rmd’

SUMMARY: processing the following file failed:
  ‘PopPsiSeq_and_Helpers.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Nick Golding <nick.golding.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Golding",
                    role = c("aut", "cre"),
                    email = "nick.golding.research@gmail.com")
as necessary.
Maintainer: ‘"Mark C. Wheldon" <biostatmark@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mark", "C."),
                      family = "Wheldon",
                      role = "aut"),
               person(given = c("\"Mark", "C."),
                      family = "Wheldon\"",
                      role = "cre",
                      email = "biostatmark@gmail.com"))
as necessary.
Maintainer: ‘Guillaume Chapron <gchapron@carnivoreconservation.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guillaume",
                    family = "Chapron",
                    role = c("aut", "cre"),
                    email = "gchapron@carnivoreconservation.org")
as necessary.
Maintainer: ‘Marios Batsaris <m.batsaris@aegean.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marios",
                    family = "Batsaris",
                    role = c("aut", "cre"),
                    email = "m.batsaris@aegean.gr")
as necessary.
Maintainer: ‘Esam Mahdi <emahdi2012@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Esam",
                    family = "Mahdi",
                    role = c("aut", "cre"),
                    email = "emahdi2012@gmail.com")
as necessary.
'::' or ':::' import not declared from: ‘RPESE’
'library' or 'require' calls not declared from:
  ‘TTR’ ‘doMC’
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘James Robinson <james.em.robinson@gmail.com>’

The Description field contains
  <arXiv:1806.11544>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Char Leung <charleung@hotmail.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Char",
                    family = "Leung",
                    role = c("aut", "cre"),
                    email = "charleung@hotmail.fr")
as necessary.
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = "Leif",
                      family = "Johnson",
                      role = "aut",
                      email = "ltjohnson@google.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ebp.Rd: nlme
  write.excel.Rd: openxlsx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Eric Kawaguchi <erickawaguchi@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qing",
                      family = "Yang",
                      role = "aut"),
               person(given = c("Wing", "K."),
                      family = "Fung",
                      role = "aut"),
               person(given = "Eric",
                      family = "Kawaguchi",
                      role = c("ctb", "cre"),
                      email = "erickawaguchi@ucla.edu"),
               person(given = "Gang",
                      family = "Li",
                      role = c("aut", "cre")))
as necessary.
Maintainer: ‘Charles Kooperberg <clk@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Kooperberg",
                      role = c("aut", "cre"),
                      email = "clk@fredhutch.org"),
               person(given = "Li",
                      family = "Hsu",
                      role = "aut",
                      email = "lih@fredhutch.org"))
as necessary.
checkRd: (-1) coalesce_xy.Rd:22: Lost braces; missing escapes or markup?
    22 | the \code{conflict} argument of {powerjoin}'s join functions. \code{coalesce_xy()} is
       |                                 ^
checkRd: (-1) power_left_join.Rd:67: Lost braces; missing escapes or markup?
    67 | \item{by}{As in {dplyr}, but extended so user can supply a formula or a list
       |                 ^
checkRd: (-1) power_left_join.Rd:79: Lost braces; missing escapes or markup?
    79 | \item{keep}{A boolean for compatibility with {dplyr}, or a value among "left",
       |                                              ^
checkRd: (-1) preprocess_inputs.Rd:37: Lost braces; missing escapes or markup?
    37 | only be used in the \code{x} and \code{y} arguments of {powerjoin} join functions. No
       |                                                        ^
Maintainer: ‘Weiliang Qiu <weiliang.qiu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Weiliang",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "weiliang.qiu@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘FSR.R’ ‘SR.R’ ‘helper_functions_model.R’ ‘plot.powerNLSEM.R’
    ‘smart_search.R’
Maintainer: ‘Daniel E. Weeks <weeks@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Daniel", "E."),
                    family = "Weeks",
                    role = c("aut", "cre"),
                    email = "weeks@pitt.edu")
as necessary.
checkRd: (-1) bira2.Rd:91: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:144: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:146: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:148: Escaped LaTeX specials: \&
checkRd: (-1) bira2.Rd:150: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:126: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:219: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:221: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:223: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:225: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:227: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:229: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:231: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:233: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:235: Escaped LaTeX specials: \&
checkRd: (-1) cra2.Rd:237: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:301: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:303: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:305: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:307: Escaped LaTeX specials: \&
checkRd: (-1) cra3.Rd:309: Escaped LaTeX specials: \&
checkRd: (-1) med_pn.Rd:129: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘save.R’
Maintainer: ‘Thorsten Pohlert <thorsten.pohlert@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thorsten",
                    family = "Pohlert",
                    role = c("aut", "cre"),
                    email = "thorsten.pohlert@gmx.de")
as necessary.
Maintainer: ‘David Hofmeyr <dhofmeyr@sun.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hofmeyr",
                    role = c("aut", "cre"),
                    email = "n.pavlidis@lancaster.ac.uk")
as necessary.
Maintainer: ‘Zeynel Cebeci <zcebeci@cukurova.edu.tr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Seongho Kim <biostatistician.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Seongho",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "biostatistician.kim@gmail.com")
as necessary.
Maintainer: ‘Ben Youngman <b.youngman@exeter.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ben",
                      family = "Youngman",
                      role = c("aut", "cre"),
                      email = "b.youngman@exeter.ac.uk"),
               person(given = "Theo",
                      family = "Economou",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ProgPredLasso.Rd: cvCovEst
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Di Shu <shudi1991@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Di",
                      family = "Shu",
                      role = c("aut", "cre"),
                      email = "shudi1991@gmail.com"),
               person(given = "Sengwee",
                      family = "Toh",
                      role = "aut",
                      email = "darren_toh@harvardpilgrim.org"))
as necessary.
Maintainer: ‘Taiane Schaedler Prass <taianeprass@gmail.com>’

The Description field contains
  <arXiv:2303.04754>) and has been found to outperform several other
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ian Renner <Ian.Renner@newcastle.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ian",
                    family = "Renner",
                    role = c("aut", "cre"),
                    email = "ian.renner@newcastle.edu.au")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  envelope-methods.Rd: envelope
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) ccp_ppm.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{model}{Determines of model fit is such that there are p_{it}s (model=1) or
       |                                                               ^
checkRd: (-1) curve_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each subjects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
checkRd: (-1) gaussian_ppmx.Rd:143: Lost braces; missing escapes or markup?
   143 | \item mu - a matrix  of dimension (T, N) containing MCMC iterates associated with each subjects mean parameter (mu*_{c_i}).
       |                                                                                                                     ^
checkRd: (-1) gaussian_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each subjects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
checkRd: (-1) ordinal_ppmx.Rd:145: Lost braces; missing escapes or markup?
   145 | \item mu - a matrix  of dimension (T, N) containing MCMC iterates associated with each subjects mean parameter (mu*_{c_i}).
       |                                                                                                                     ^
checkRd: (-1) ordinal_ppmx.Rd:147: Lost braces; missing escapes or markup?
   147 | \item sig2 - a matrix of dimension (T, N) containing MCMC iterates associated with each sujbects variance parameter (sigma2*_{c_i})
       |                                                                                                                              ^
Maintainer: ‘Jan Steinfeld <jan.d.steinfeld@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Jack G. Gambino <jack.gambino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jack", "G."),
                    family = "Gambino",
                    role = c("aut", "cre"),
                    email = "jack.gambino@gmail.com")
as necessary.
Maintainer: ‘Karla Mayra Perez <karla.mayra25@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Karla", "Mayra"),
                      family = "Perez",
                      role = c("aut", "cre"),
                      email = "karla.mayra25@gmail.com"),
               person(given = c("Luis", "E."),
                      family = "Nieto-Barajas",
                      role = "aut"))
as necessary.

The Description field contains
  (2019) <arXiv:1902.06020>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Eun-Kyung Lee <lee.eunk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eun-Kyung",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "lee.eunk@gmail.com")
as necessary.
Maintainer: ‘Jessica J. Kraker <krakerjj@uwec.edu>’

The Description field contains
  mathematical derivations and applications can be found on arXiv:
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Guangbao Guo <ggb11111111@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guangbao",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "ggb11111111@163.com"),
               person(given = "Jiarui",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Jiaqiang Zhu <jiaqiang@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shiquan",
                      family = "Sun",
                      role = "aut"),
               person(given = "Jiaqiang",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "jiaqiang@umich.edu"),
               person(given = "Xiang",
                      family = "Zhou",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PQLseq.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pqrfe.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabor",
                      family = "Csardi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "Sindre",
                      family = "Sorhus",
                      role = "aut"))
as necessary.
Maintainer: ‘Miron B. Kursa <m@mbq.me>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘praznik/libs/praznik.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Chong Wu <wuxx0845@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chong",
                      family = "Wu",
                      role = c("aut", "cre"),
                      email = "wuxx0845@umn.edu"),
               person(given = "Wei",
                      family = "Pan",
                      role = "aut"))
as necessary.
Maintainer: ‘Claudio Zandonella Callegher <claudiozandonella@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘PRDA.Rd’:
    https://doi.org/10.3389/fpsyg.2019.02893
    https://doi.org/10.1177/1745691614551642
  File ‘prospective.Rd’:
    https://doi.org/10.3389/fpsyg.2019.02893
    https://doi.org/10.1177/1745691614551642
  File ‘retrospective.Rd’:
    https://doi.org/10.3389/fpsyg.2019.02893
    https://doi.org/10.1177/1745691614551642
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PRDA.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) PRDA.Rd:8: Lost braces; missing escapes or markup?
     8 | Given an hypothetical value of effect size, {PRDA} performs a prospective
       |                                             ^
checkRd: (-1) PRDA.Rd:22: Lost braces; missing escapes or markup?
    22 | In {PRDA} there are two main functions:
       |    ^
checkRd: (-1) PRDA.Rd:51: Lost braces; missing escapes or markup?
    51 | Alternatively, {PRDA} allows users to specify a distribution of plausible
       |                ^
Maintainer: ‘Lucas Venezian Povoa <lucasvenez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Lucas", "Venezian"),
                      family = "Povoa",
                      role = c("aut", "cre"),
                      email = "lucasvenez@gmail.com"),
               person(given = c("Jonas", "Teixeira"),
                      family = "Nery",
                      role = "ctb"))
as necessary.
Running examples in ‘precintcon-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pplot.deciles
> ### Title: Plot deciles
> ### Aliases: pplot.deciles precintcon.plot.deciles
> ### Keywords: deciles precipitation
> 
> ### ** Examples
> 
> ## Loading the monthly precipitation serie.
> #
> data(monthly)
> 
> ## Performing the a set of statistical analysis
> #
> pplot.deciles(monthly)
Error:
! The `show_guide` argument of `layer()` was deprecated in ggplot2 2.0.0
  and is now defunct.
ℹ Please use the `show.legend` argument instead.
Backtrace:
    ▆
 1. └─precintcon::pplot.deciles(monthly)
 2.   └─precintcon::precintcon.plot.deciles(...)
 3.     └─base::mapply(...)
 4.       └─precintcon (local) `<fn>`(...)
 5.         └─ggplot2::geom_boxplot(...)
 6.           └─ggplot2::layer(...)
 7.             └─lifecycle::deprecate_stop("2.0.0", "layer(show_guide)", "layer(show.legend)")
 8.               └─lifecycle:::deprecate_stop0(msg)
 9.                 └─rlang::cnd_signal(...)
Execution halted
Maintainer: ‘Lorenz Walthert <lorenz.walthert@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenz",
                    family = "Walthert",
                    role = c("aut", "cre"),
                    email = "lorenz.walthert@icloud.com")
as necessary.
checkRd: (-1) diagnose_expressions.Rd:39: Lost braces
    39 | \item wrapping a function argument in two curly braces (e.g. `{{arg}} > 0) means
       |                                                               ^
File ‘precondition/libs/precondition.so’:
  Found non-API calls to R: ‘PRENV’, ‘R_PromiseExpr’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Error(s) in re-building vignettes:
  ...
--- re-building ‘predict3d.Rmd’ using rmarkdown

Quitting from predict3d.Rmd:54-58 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'ggplot_build' applied to an object of class "c('gg', 'ggplot', 'ggPredict')"
---
Backtrace:
    ▆
 1. └─predict3d::ggPredict(fit1, digits = 1)
 2.   └─predict3d::getAspectRatio(p)
 3.     └─ggplot2::layer_scales(p)
 4.       └─ggplot2::ggplot_build(plot)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'predict3d.Rmd' failed with diagnostics:
no applicable method for 'ggplot_build' applied to an object of class "c('gg', 'ggplot', 'ggPredict')"
--- failed re-building ‘predict3d.Rmd’

SUMMARY: processing the following file failed:
  ‘predict3d.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Suman Kundu <suman_math@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suman",
                      family = "Kundu",
                      role = c("aut", "cre"),
                      email = "suman_math@yahoo.com"),
               person(given = c("Yurii", "S."),
                      family = "Aulchenko",
                      role = "aut"),
               person(given = c("A.", "Cecile", "J.W."),
                      family = "Janssens",
                      role = "aut"))
as necessary.
Maintainer: ‘David Stanley <dstanley@uoguelph.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Stanley",
                    role = c("aut", "cre"),
                    email = "dstanley@uoguelph.ca")
as necessary.
Maintainer: ‘Marcel Miché <marcel.miche.predictme@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcel",
                    family = "Miché",
                    role = c("aut", "cre"),
                    email = "marcel.miche.predictme@gmail.com")
as necessary.
Maintainer: ‘Orestis Efthimiou <oremiou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Orestis",
                    family = "Efthimiou",
                    role = c("aut", "cre"),
                    email = "oremiou@gmail.com")
as necessary.
Maintainer: ‘Atesh Koul <atesh.koul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Atesh",
                    family = "Koul",
                    role = c("aut", "cre"),
                    email = "atesh.koul@gmail.com")
as necessary.
Found the following significant warnings:
  Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘PredPsych’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PredPsych.Rcheck/00install.out’ for details.
Maintainer: ‘Amin Adibi <adibi@alumni.ubc.ca>’

The Description field contains
  <arXiv:2003.00316>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) dev_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dev_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gusto.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) val_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:58-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:61-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:68-69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:70-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference-package.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:22-23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:24-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) preference.Rd:26-27: Lost braces in \itemize; meant \describe ?
Maintainer: ‘John Lepird <jlepird@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Lepird",
                    role = c("aut", "cre"),
                    email = "jlepird@alum.mit.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Denis Mollison <denis.mollison@gmail.com>’

The Description field contains
  (2023) <arXiv:2303.15310>, (see also the package manual
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chin Soon Lim <chinsoon12@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chin", "Soon"),
                    family = "Lim",
                    role = c("aut", "cre"),
                    email = "chinsoon12@hotmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chinsoon12/PreKnitPostHTMLRender
which should likely be
  https://github.com/chinsoon12/PreKnitPostHTMLRender/issues
instead.
Maintainer: ‘Silvia Liverani <liveranis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "I."),
                      family = "Hastie",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Liverani",
                      role = c("aut", "cre"),
                      email = "liveranis@gmail.com"),
               person(given = c("Sylvia", "Richardson", "with", "contributions", "from", "Aurore", "J."),
                      family = "Lavigne",
                      role = "aut"),
               person(given = "Lucy",
                      family = "Leigh",
                      role = "aut"),
               person(given = "Lamiae",
                      family = "Azizi",
                      role = "aut"),
               person(given = "Xi",
                      family = "Liu",
                      role = "aut"),
               person(given = "Ruizhu",
                      family = "Huang",
                      role = "aut"),
               person(given = "Austin",
                      family = "Gratton",
                      role = "aut"),
               person(given = "Wei",
                      family = "Jing",
                      role = "aut"))
as necessary.
Maintainer: ‘Swamiji Pravedson <swamiji.pravedson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Swamiji",
                    family = "Pravedson",
                    role = c("aut", "cre"),
                    email = "swamiji.pravedson@gmail.com")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Josef Frank <josef.frank@gmx.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Frank",
                    role = c("aut", "cre"),
                    email = "josef.frank@gmx.ch")
as necessary.
checkRd: (-1) prereg_initialize.Rd:20: Lost braces; missing escapes or markup?
    20 | the (pre)registration form specification (in {preregr} format), see the
       |                                              ^
checkRd: (-1) prereg_initialize.Rd:23: Lost braces; missing escapes or markup?
    23 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
checkRd: (-1) prereg_initialize.Rd:26: Lost braces; missing escapes or markup?
    26 | For an introduction to working with {preregr} (pre)registrations,
       |                                     ^
checkRd: (-1) rmd_templates.Rd:75: Lost braces; missing escapes or markup?
    75 | This function creates an R Markdown template from a {preregr}
       |                                                     ^
checkRd: (-1) rmd_templates.Rd:77: Lost braces; missing escapes or markup?
    77 | Sheet holding the (pre)registration form specification (in {preregr}
       |                                                            ^
checkRd: (-1) rmd_templates.Rd:81: Lost braces; missing escapes or markup?
    81 | specification, or a loaded or imported {preregr} (pre)registration form.
       |                                        ^
Maintainer: ‘Elizabeth Freeman <elizabeth.a.freeman@usda.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elizabeth",
                    family = "Freeman",
                    role = c("aut", "cre"),
                    email = "elizabeth.a.freeman@usda.gov")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Matthew A. Birk <matthewabirk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "A."),
                    family = "Birk",
                    role = c("aut", "cre"),
                    email = "matthewabirk@gmail.com")
as necessary.
checkRd: (-1) format_number.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) format_number.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) format_number.Rd:38: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gustavo Soutinho <gustavosoutinho@sapo.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gustavo",
                      family = "Soutinho",
                      role = c("aut", "cre"),
                      email = "gustavosoutinho@sapo.pt"),
               person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut"),
               person(given = "Pedro",
                      family = "Oliveira",
                      role = "aut"))
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Dewey Dunnington <dewey@fishandwhistle.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dewey",
                    family = "Dunnington",
                    role = c("aut", "cre"),
                    email = "dewey@fishandwhistle.net")
as necessary.
Maintainer: ‘Jim Lemon <drjimlemon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Lemon",
                      role = c("aut", "cre"),
                      email = "drjimlemon@gmail.com"),
               person(given = "Philippe",
                      family = "Grosjean",
                      role = "aut",
                      email = "phgrosjean@sciviews.org"))
as necessary.
Found the following files/directories:
  ‘hista.png’ ‘plotcd.png’ ‘test.R’ ‘test.html’ ‘testR2html.R’
  ‘testglm.csv’ ‘testglm.html’ ‘testglm.tab’
Maintainer: ‘Brecht Devleesschauwer <brechtdv@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘estimate_risk.Rd’
Maintainer: ‘Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ankur",
                    family = "Chakravarthy",
                    role = c("aut", "cre"),
                    email = "ankur.chakravarthy.10@ucl.ac.uk")
as necessary.
Maintainer: ‘Zichong Li <zichongli5@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zichong",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "zichongli5@gmail.com"),
               person(given = "Qianli",
                      family = "Shen",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘David Schruth <data@anthropoidea.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Schruth",
                      role = "cre",
                      email = "data@anthropoidea.org"),
               person(given = "Marc",
                      family = "Myers",
                      role = "ctb"),
               person(given = "Noel",
                      family = "Rowe",
                      role = "aut"))
as necessary.
Maintainer: ‘Florian Privé <florian.prive.21@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: commits/master
    From: README.md
  URI: /commits/master
    From: README.md
Maintainer: ‘Ziwei Zhu <ziweiz@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziwei",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "ziweiz@umich.edu"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  component analysis with heterogeneous missingness. <arXiv:1906.12125>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hank Stevens <hank.stevens@miamioh.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("M", "H", "H"),
                      family = "Stevens",
                      role = "aut"),
               person(given = "Hank",
                      family = "Stevens",
                      role = "cre",
                      email = "hank.stevens@miamioh.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) alogistic.Rd:20: Lost braces
    20 | The user does not put these directly into this function, but rather uses code{ode} in the \code{deSolve} package.
       |                                                                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get_sequence.Rd: DNAbin
  get_sequences.Rd: DNAbin
  layout_tree_ape.Rd: phylo, plot.phylo
  search_primer_pair.Rd: create_progress_bar, response
  tree_from_alignment.Rd: dist.dna, nj
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘PRIMME/libs/PRIMME.so’:
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘primme/libprimme.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (HenrikBengtsson), Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’
  Authors@R: ‘Trevor Hastie [aut], Andreas Weingessel [aut], Kurt Hornik [aut] (ORCID: <https://orcid.org/0000-0003-4198-9911>), Henrik Bengtsson [ctb] (github: HenrikBengtsson), Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’
checkRd: (-1) findbeta.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{lower.v}{logical, if TRUE the specified percentile.value is the upper limit for the mean (or the median or the mode) at the specified confidence level (percentile). If {FALSE} the specified percentile.value is the lower limit for the mean (or the median or the mode) at the specified confidence level (percentile). The default is FALSE.}
       |                                                                                                                                                                               ^
Maintainer: ‘Roman Hornung <hornung@ibe.med.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Klau",
                      role = "aut"),
               person(given = "Roman",
                      family = "Hornung",
                      role = c("aut", "cre"),
                      email = "hornung@ibe.med.uni-muenchen.de"),
               person(given = "Alina",
                      family = "Bauer",
                      role = "aut"),
               person(given = "Jonas",
                      family = "Hagenberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Tammo Krueger <tammokrueger@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tammo",
                      family = "Krueger",
                      role = c("aut", "cre"),
                      email = "tammokrueger@googlemail.com"),
               person(given = "Nicole",
                      family = "Kraemer",
                      role = "aut"))
as necessary.
Maintainer: ‘Danilo Freire <danilofreire@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Prithul Chaturvedi <prithulc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prithul",
                    family = "Chaturvedi",
                    role = c("aut", "cre"),
                    email = "prithulc@gmail.com")
as necessary.
Maintainer: ‘Staal A. Vinterbo <Staal.Vinterbo@ntnu.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Staal", "A."),
                    family = "Vinterbo",
                    role = c("aut", "cre"),
                    email = "Staal.Vinterbo@ntnu.no")
as necessary.
Maintainer: ‘Jim Albert <albert@bgsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jim",
                    family = "Albert",
                    role = c("aut", "cre"),
                    email = "albert@bgsu.edu")
as necessary.
Maintainer: ‘Junhui Li <junhuili@cau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junhui",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "junhuili@cau.edu.cn")
as necessary.
Maintainer: ‘Alexander McLain <mclaina@mailbox.sc.edu>’

The Description field contains
  Zgodic, and Bondell (2022) <arXiv:2209.08139>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tim Liao <tfliao@illinois.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Liao",
                    role = c("aut", "cre"),
                    email = "tfliao@illinois.edu")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Giuliana Cortese <gcortese@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giuliana",
                    family = "Cortese",
                    role = c("aut", "cre"),
                    email = "gcortese@stat.unipd.it")
as necessary.
Maintainer: ‘Rishabh Gupta <rishabh.uk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rishabh",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "rishabh.uk@gmail.com"),
               person(given = c("Nicholas", "J."),
                      family = "Matzke",
                      role = "aut"))
as necessary.
checkRd: (-1) proc.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) proc.Rd:28: Lost braces in \itemize; meant \describe ?
Maintainer: ‘gert.janssenswillen@uhasselt.be <gert.janssenswillen@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gert",
                      family = "Janssenswillen",
                      role = "aut"),
               person(family = "gert.janssenswillen@uhasselt.be",
                      role = "cre",
                      email = "gert.janssenswillen@uhasselt.be"))
as necessary.
Maintainer: ‘Eric Coissac <eric.coissac@metabarcoding.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eric",
                      family = "Coissac",
                      role = c("aut", "cre"),
                      email = "eric.coissac@metabarcoding.org"),
               person(given = "Christelle",
                      family = "Gonindard-Melodelima",
                      role = "aut"))
as necessary.
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Trevor",
                      family = "Hastie",
                      role = c("aut", "cre"),
                      email = "hastie@stanford.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Gabriele Rovigatti <gabriele.rovigatti@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Rovigatti",
                    role = c("aut", "cre"),
                    email = "gabriele.rovigatti@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yann Desjeux <yann.desjeux@inra.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘fareprim.Rd’:
    https://doi.org/10.1093/ajae/aas023
  File ‘fisher.Rd’:
    https://doi.org/10.1007/BF00158354
  File ‘hicksmoorsteen.Rd’:
    https://doi.org/10.1111/j.1467-9957.2010.02169.x
    https://doi.org/10.1111/j.1467-8489.2010.00512.x
  File ‘lowe.Rd’:
    https://doi.org/10.1093/ajae/aas023
  File ‘usagri.Rd’:
    https://doi.org/10.2307/1244458
    https://doi.org/10.1111/j.0002-9092.2004.00683.x
checkRd: (-1) paasche.Rd:91: Lost braces
    91 |     \code{OSME} \tab Output-oriented scale-mix efficiency score \emph{(code{orientation = "out"})}\cr
       |                                                                            ^
checkRd: (-1) plot.profileModel.Rd:69: Escaped LaTeX specials: \&
checkRd: (-1) profileModel.Rd:277: Escaped LaTeX specials: \&
Maintainer: ‘Christopher David Desjardins <cddesjardins@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Okan",
                      family = "Bulut",
                      role = "aut",
                      email = "okanbulut84@gmail.com"),
               person(given = c("Christopher", "David"),
                      family = "Desjardins",
                      role = c("aut", "cre"),
                      email = "cddesjardins@gmail.com"))
as necessary.
checkRd: (-1) PS.Rd:9: Lost braces
     9 |                 \item{CD}{}{Character disorder scale score}
       |                            ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘how-to-use.Rmd’ using rmarkdown
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "lwd.ticks" is not a graphical parameter
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘how-to-use.Rmd’

--- re-building ‘plots-gallery.Rmd’ using rmarkdown

Quitting from plots-gallery.Rmd:1148-1150 [unnamed-chunk-47]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'plots-gallery.Rmd' failed with diagnostics:
Problem while computing stat.
ℹ Error occurred in the 1st layer.
Caused by error in `compute_layer()`:
! The package "MASS" is required for calculating 2D density.
--- failed re-building ‘plots-gallery.Rmd’

SUMMARY: processing the following file failed:
  ‘plots-gallery.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Tierney",
                      role = c("aut", "cre"),
                      email = "luke-tierney@uiowa.edu"),
               person(given = "Riad",
                      family = "Jarjour",
                      role = "aut"))
as necessary.
checkRd: (-1) proftools-package.Rd:40: Lost braces
    40 |   by the code{kcachegrind} program available on some operating
       |              ^
checkRd: (-1) prolific_prescreener.Rd:254: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_prescreener.Rd:255: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:95: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:243: Lost braces in \itemize; meant \describe ?
checkRd: (-1) prolific_study.Rd:244: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Francesco Vidoli <fvidoli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuliano",
                      family = "Resce",
                      role = "aut"),
               person(given = "Menelaos",
                      family = "Tasiou",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Vidoli",
                      role = c("aut", "cre"),
                      email = "fvidoli@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Austria.Rd’:
    https://doi.org/10.1016/j.jclepro.2019.02.115
checkRd: (-1) impute_plot.Rd:32: Lost braces; missing escapes or markup?
    32 | \item{global}{Logical. If \code{TRUE} ({default}), a global density plot is
       |                                        ^
Maintainer: ‘Paul E. Promote <promotedev@alteryx.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "E."),
                    family = "Promote",
                    role = c("aut", "cre"),
                    email = "promotedev@alteryx.com")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘complete_chat.R’ ‘complete_prompt.R’ ‘format_prompt.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘build_url.R’
Maintainer: ‘Ralph Scherer <shearer.ra76@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ralph",
                    family = "Scherer",
                    role = c("aut", "cre"),
                    email = "shearer.ra76@gmail.com")
as necessary.
Maintainer: ‘Peter Langfelder <Peter.Langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "Michael", "O"),
                      family = "Ranola",
                      role = "aut"),
               person(given = "Kenneth",
                      family = "Lange",
                      role = "aut"),
               person(given = "Steve",
                      family = "Horvath",
                      role = "aut"),
               person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "peter.langfelder@gmail.com"))
as necessary.
Maintainer: ‘Maria Alvarez <maria.alvarez@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maria",
                      family = "Alvarez",
                      role = c("aut", "cre"),
                      email = "maria.alvarez@uvigo.es"),
               person(given = "Javier",
                      family = "Roca-Pardinas",
                      role = "aut"))
as necessary.
Maintainer: ‘Daan Seynaeve <daan.seynaeve@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tobias",
                      family = "Verbeke",
                      role = "aut"),
               person(given = "Daan",
                      family = "Seynaeve",
                      role = c("aut", "cre"),
                      email = "daan.seynaeve@openanalytics.eu"),
               person(given = c("based", "on", "read.dcf", "by", "R", "Core", "Development"),
                      family = "Team",
                      role = "aut"))
as necessary.
Maintainer: ‘Osama Mahmoud <ofamah@essex.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Osama",
                      family = "Mahmoud",
                      role = c("aut", "cre"),
                      email = "ofamah@essex.ac.uk"),
               person(given = "Andrew",
                      family = "Harrison",
                      role = "aut"),
               person(given = "Aris",
                      family = "Perperoglou",
                      role = "aut"),
               person(given = "Asma",
                      family = "Gul",
                      role = "aut"),
               person(given = "Zardad",
                      family = "Khan",
                      role = "aut"),
               person(given = "Berthold",
                      family = "Lausen",
                      role = "aut"))
as necessary.
Maintainer: ‘Travis Loux <travis.loux@slu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Travis",
                    family = "Loux",
                    role = c("aut", "cre"),
                    email = "travis.loux@slu.edu")
as necessary.
Maintainer: ‘Nadine Fischoff <nadine.khattak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nadine",
                    family = "Fischoff",
                    role = c("aut", "cre"),
                    email = "nadine.khattak@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘getBills.Rd’:
    \keyword{api,}
    \keyword{congress,}
    \keyword{propublica,}
Maintainer: ‘Xi (Rossi) LUO <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Xi", "LUO", "with", "contributions", "from", "Dylan"),
                      family = "Small",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Vikaas",
                      family = "Sohal",
                      role = "aut"),
               person(given = "Xi",
                      family = "LUO",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.
checkRd: (-1) struc_addSimData.Rd:15: Lost braces
    15 | \item{value}{code{data.frame} or code{data.table}}
       |                  ^
checkRd: (-1) struc_addSimData.Rd:15: Lost braces
    15 | \item{value}{code{data.frame} or code{data.table}}
       |                                      ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nba_data.R’ ‘nba_data.Rd’ ‘nfl_data.R’ ‘nhl_data.R’ ‘nhl_data.Rd’
Maintainer: ‘Simon Liles <simon@quantknot.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Liles",
                    role = c("aut", "cre"),
                    email = "simon@quantknot.com")
as necessary.
Maintainer: ‘Arthur Leroy <arthur.leroy.pro@gmail.com>’

The Description field contains
  <arXiv:2307.08975>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Przemysław Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  available at http://biecek.pl/BetaBit/Warsaw.  It's a part of Beta and
  http://biecek.pl/BetaBit.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Reid",
                    role = c("aut", "cre"),
                    email = "sreid1652@gmail.com")
as necessary.
checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cell.R’ ‘command.R’ ‘instrument.R’ ‘io.R’ ‘modplug.R’ ‘note.R’
    ‘render.R’ ‘s3.R’ ‘select_ops.R’
checkRd: (-1) pr_stem_sentences.Rd:20: Lost braces; missing escapes or markup?
    20 | Implementation of the {SnowballC} stemmer. Note that punctuation and capital letters 
       |                       ^
checkRd: (-1) pr_stem_words.Rd:20: Lost braces; missing escapes or markup?
    20 | Implementation of the {SnowballC} stemmer. Note that punctuation and capitals letters 
       |                       ^
checkRd: (-1) proust_sentiments.Rd:7: Lost braces; missing escapes or markup?
     7 | See the {rfeel} package now: http://github.com/ColinFay/rfeel}
       |         ^
checkRd: (-1) proust_sentiments.Rd:20: Lost braces; missing escapes or markup?
    20 | See the {rfeel} package now: http://github.com/ColinFay/rfeel
       |         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_proverbs.R’
File ‘proxy/libs/proxy.so’:
  Found non-API calls to R: ‘OBJECT’, ‘Rf_NonNullStringMatch’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Yi Zhao <zhayi@umich.edu>’

The Description field contains
  <arXiv:2105.03993>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘M. S. Islam <shahed-sta@sust.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("M.", "S."),
                    family = "Islam",
                    role = c("aut", "cre"),
                    email = "shahed-sta@sust.edu")
as necessary.
File ‘pryr/libs/pryr.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘NAMED’, ‘PRCODE’,
    ‘PRENV’, ‘PRVALUE’, ‘Rf_findVarInFrame3’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘boot.weighting.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PSAboot.Rd: Match
  balance.matching.Rd: cv.trans.psa
  boot.ctree.Rd: cv.trans.psa
  boot.matching.Rd: cv.trans.psa, Match
  boot.matchit.Rd: cv.trans.psa
  boot.rpart.Rd: cv.trans.psa
  boot.strata.Rd: cv.trans.psa
  boot.weighting.Rd: cv.trans.psa
  boxplot.PSAboot.balance.Rd: facet_wrap
  hist.PSAboot.Rd: geom_histogram
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Kyu Ha Lee <klee@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee@hsph.harvard.edu"),
               person(given = "Sounak",
                      family = "Chakraborty",
                      role = "aut"),
               person(given = "Harrison",
                      family = "Reeder",
                      role = "aut"),
               person(given = c("", "Jianguo"),
                      family = "Sun",
                      role = "aut",
                      comment = "Tony"))
as necessary.
checkRd: (-1) qpc.Rd:43: Lost braces
    43 | S{Sulewski, P. (2020). \emph{Normal Distribution with Plasticizing Component,} Communications in Statistics ? Theory and Method 51(11), 3806-3835.}
       |  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pseudohouseholds.R’
Maintainer: ‘Neeraj Bokde <neerajdhanraj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Neeraj",
                      family = "Bokde",
                      role = c("aut", "cre"),
                      email = "neerajdhanraj@gmail.com"),
               person(given = "Gualberto",
                      family = "Asencio-Cortes",
                      role = "aut"),
               person(given = "Francisco",
                      family = "Martinez-Alvarez",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) data1.Rd:14: Lost braces
    14 | The data set from {AbouRizk, S.M., Halpin, D.W., Wilson, J. R. (1994). \emph{Fitting beta distributions based on sample data.} Journal of Construction Engineering and Management 120(2), 288–305.}
       |                   ^
checkRd: (-1) data2.Rd:14: Lost braces; missing escapes or markup?
    14 | The data set presents the height of 99 five-year-old British boys in cm downloaded from {http://www.mas.ncl.ac.uk/njnsm/medfac/docs/intro.pdf.}
       |                                                                                         ^
Maintainer: ‘Oleg Sysoev <Oleg.Sysoev@liu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oleg",
                      family = "Sysoev",
                      role = c("aut", "cre"),
                      email = "oleg.sysoev@liu.se"),
               person(given = "Krzysztof",
                      family = "Bartoszek",
                      role = "aut"),
               person(given = c("Katarina", "Ekholm"),
                      family = "Selling",
                      role = "aut"),
               person(given = "Lotta",
                      family = "Ekstrom",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) table1.Rd:14: Lost braces
    14 | The first data set from {Sulewski, P. (2017) \emph{A new test for independence in 2x2 contingency tables,} Acta Universitatis Lodziensis. Folia Oeconomica, 4(330), 55–75}
       |                         ^
checkRd: (-1) table3.Rd:14: Lost braces
    14 | The third data set from {Sulewski, P. (2021). \emph{Logarithmic Minimum Test for Independence in Three Way Con-tingency Table of Small Sizes.} Journal of Statistical Computation and Simulation 91(13), 2780-2799}
       |                         ^
Maintainer: ‘Claus Bendtsen <papyrus.bendtsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claus",
                      family = "Bendtsen.",
                      role = "aut",
                      email = "papyrus.bendtsen@gmail.com"),
               person(given = "Claus",
                      family = "Bendtsen",
                      role = "cre",
                      email = "papyrus.bendtsen@gmail.com"))
as necessary.
Maintainer: ‘Petr Savicky <savicky@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Savicky",
                    role = c("aut", "cre"),
                    email = "savicky@cs.cas.cz")
as necessary.
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Jim", "Ramsey.", "R", "port", "by", "Brian", "Ripley"),
                      family = "<Brian.Ripley@R-project.org>.",
                      role = "aut",
                      email = "Brian.Ripley@R-project.org"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "cre",
                      email = "Brian.Ripley@R-project.org"))
as necessary.
Maintainer: ‘Andre M. de Roos <A.M.deRoos@uva.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lenard Dome <lenarddome@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘psp.Rd’:
    \keyword{computational modelling; parameter space  [TRUNCATED]
  File ‘pspGlobal.Rd’:
    \keyword{computational modelling; parameter space  [TRUNCATED]
  File ‘psp_global.Rd’:
    \keyword{computational modelling; parameter space; [TRUNCATED]
Maintainer: ‘Haiyan Wang <hwang@ksu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luann", "C."),
                      family = "Jung",
                      role = "aut"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "hwang@ksu.edu"),
               person(given = "Diego",
                      family = "Maldonado",
                      role = "aut"),
               person(given = "Sharad",
                      family = "Silwal",
                      role = "aut"),
               person(given = "Siti",
                      family = "Tolos",
                      role = "aut"),
               person(given = "Suojin",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘riskCurve.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘summary.riskCurve.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘testConstancy.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
  File ‘testEquality.Rd’:
    https://doi.org/10.1093/biostatistics/kxy074
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xudong",
                      family = "Han",
                      role = "aut"),
               person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Qing",
                      family = "Fei",
                      role = "aut"))
as necessary.
Maintainer: ‘Blondeau Da Silva Stephane <blondeaudasilva@xlim.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Blondeau", "Da", "Silva"),
                      family = "Stephane.",
                      role = "aut"),
               person(given = c("Blondeau", "Da", "Silva"),
                      family = "Stephane",
                      role = "cre",
                      email = "blondeaudasilva@xlim.fr"))
as necessary.
Maintainer: ‘Pedro H. C. Sant'Anna <pedro.h.santanna@vanderbilt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pedro", "H.", "C."),
                      family = "Sant'Anna",
                      role = c("aut", "cre"),
                      email = "pedro.h.santanna@vanderbilt.edu"),
               person(given = "Xiaojun",
                      family = "Song",
                      role = "aut",
                      email = "sxj@gsm.pku.edu.cn"))
as necessary.
Maintainer: ‘Bo Liu <bl226@duke.edu>’

The Description field contains
  See Liu and Li (2023) <arXiv:2304.02740> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PStrata-package.Rd: lme4
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PSTf-class.Rd: TraMineR
  cprob.Rd: TraMineR
  generate.Rd: TraMineR
  plot-PSTr.Rd: seqdef
  pmine.Rd: TraMineR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Huzhang Mao <huzhangmao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huzhang",
                      family = "Mao",
                      role = c("aut", "cre"),
                      email = "huzhangmao@gmail.com"),
               person(given = "Liang",
                      family = "Li",
                      role = "aut",
                      email = "LLi15@mdanderson.org"))
as necessary.
Maintainer: ‘Thomas D. Fletcher <t.d.fletcher05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "D."),
                    family = "Fletcher",
                    role = c("aut", "cre"),
                    email = "t.d.fletcher05@gmail.com")
as necessary.
checkRd: (-1) dprime.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dprime.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
1623,1626d1622
< Warning: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0.
< ℹ Please use the `linewidth` argument instead.
< ℹ The deprecated feature was likely used in the likert package.
<   Please report the issue at <https://github.com/jbryer/likert/issues>.
'::' or ':::' imports not declared from:
  ‘colorspace’ ‘psychomix’
'library' or 'require' calls not declared from:
  ‘car’ ‘lmtest’ ‘psychomix’ ‘psychotree’ ‘strucchange’
Maintainer: ‘Ken Knoblauch <ken.knoblauch@inserm.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Knoblauch",
                      role = "aut"),
               person(given = "Ken",
                      family = "Knoblauch",
                      role = "cre",
                      email = "ken.knoblauch@inserm.fr"))
as necessary.
Maintainer: ‘Didier G. Leibovici <GeotRYcs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Didier", "G."),
                    family = "Leibovici",
                    role = c("aut", "cre"),
                    email = "doi:10.18637/jss.v034.i10",
                    comment = "2010")
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = c("Alina", "Levine", "&", "Justin"),
                      family = "Bleich",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘PTE.Rd’:
    \keyword{medicine,}
checkRd: (-1) PTE_bootstrap_inference.Rd:39-42: Lost braces
    39 |                                                         continuous = function(Xytrain){ #defalt is OLS regression
       |                                                                                       ^
checkRd: (-1) PTE_bootstrap_inference.Rd:43-47: Lost braces
    43 |                                                         incidence = function(Xytrain){ #default is logistic regression
       |                                                                                      ^
checkRd: (-1) PTE_bootstrap_inference.Rd:48-52: Lost braces
    48 |                                                         survival = function(Xytrain){ #default is Weibull regression
       |                                                                                     ^
checkRd: (-1) PTE_bootstrap_inference.Rd:66-68: Lost braces
    66 |                                         function(mod, Xyleftout){
       |                                                                 ^
checkRd: (-1) PTE_bootstrap_inference.Rd:74-77: Lost braces
    74 |                                         function(results, indices_1_1, indices_0_0, indices_0_1, indices_1_0){
       |                                                                                                              ^
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

The Description field contains
  available in Wang et al (2022) <arXiv:2209.08414>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jose M. Maisog <bravas02@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "M."),
                      family = "Maisog",
                      role = c("aut", "cre"),
                      email = "bravas02@gmail.com"),
               person(given = "Yuan",
                      family = "Wang",
                      role = "aut"),
               person(given = "George",
                      family = "Luta",
                      role = "aut"),
               person(given = "Jianfei",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter DeWitt <peter.dewitt@cuanschutz.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mirko Signorelli <msignorelli.rpackages@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ron Wehrens <ron.wehrens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) ptw-package.Rd:20-28: Lost braces
    20 | @Article{Bloemberg2010,
       |         ^
checkRd: (-1) ptw-package.Rd:30-38: Lost braces
    30 | Article{Wehrens2015,
       |        ^
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: axis_labs
> ### Title: Apply labels from variables to axis-labels in plots.
> ### Aliases: axis_labs
> 
> ### ** Examples
> 
> data(kfm, package = "ISwR")
> require(sjlabelled, quietly = TRUE)

Attaching package: ‘sjlabelled’

The following object is masked from ‘package:ggplot2’:

    as_label

> kfm <- kfm |>
+   var_labels(
+     dl.milk = "Breast-milk intake (dl/day)",
+     sex = "Sex",
+     weight = "Child weight (kg)",
+     ml.suppl = "Milk substitute (ml/day)",
+     mat.weight = "Maternal weight (kg)",
+     mat.height = "Maternal height (cm)"
+   )
> 
> kfm |>
+   gf_point(weight ~ dl.milk) |>
+   gf_lm(col = 2, interval = "confidence", col = 2) |>
+   axis_labs()
Warning in rep(yes, length.out = len) :
  'x' is NULL so the result will be NULL
Error in ans[ypos] <- rep(yes, length.out = len)[ypos] : 
  replacement has length zero
Calls: axis_labs -> ifelse
Execution halted
Maintainer: ‘Jonas Moss <jonas.gjertsen@gmail.com>’

The Description field contains
  <arXiv:1911.12445>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ma.Rd:62: Lost braces
    62 | \item{yi}{Numeric vector of length code{k} with observed effect size
       |                                        ^
checkRd: (-1) ma.Rd:65: Lost braces
    65 | \item{vi}{Numeric vector of length code{k} with sampling variances.}
       |                                        ^
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
checkRd: (-1) plotWordCloud.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{PubMed wordcloud using function 'wordcloud' of package {wordcloud}}
       |                                                               ^
checkRd: (-1) plotWordCloud.Rd:32: Lost braces; missing escapes or markup?
    32 | This function just call 'wordcloud' from package {wordcloud}. See package {wordcloud} for more details about the parameters.
       |                                                  ^
checkRd: (-1) plotWordCloud.Rd:32: Lost braces; missing escapes or markup?
    32 | This function just call 'wordcloud' from package {wordcloud}. See package {wordcloud} for more details about the parameters.
       |                                                                           ^
Maintainer: ‘Hyebin Song <hps5320@psu.edu>’

The Description field contains
  <arXiv:1711.08129>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Tong He <hetong007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tong",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "hetong007@gmail.com")
as necessary.
Maintainer: ‘Zachary Kurtz <zdkurtz@gmail.com>’

The Description field contains
  Müller, Richard Bonneau, Zachary Kurtz (2016) <arXiv:1605.07072>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luis", "J."),
                    family = "Villanueva-Rivera",
                    role = c("aut", "cre"),
                    email = "ljvillanueva@coquipr.com")
as necessary.

The Description field contains
  (http://ljvillanueva.github.io/pumilio/).
Please enclose URLs in angle brackets (<...>).
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘source_pmc.R’ ‘source_pubmed.R’ ‘source_pubtations.R’
Maintainer: ‘Richèl J.C. Bilderbeek <richel@richelbilderbeek.nl>’

The BugReports field in DESCRIPTION has
  https://github.com/richelbilderbeek/pureseqtmr/
which should likely be
  https://github.com/richelbilderbeek/pureseqtmr/issues
instead.
Maintainer: ‘Philip D. Waggoner <philip.waggoner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "D."),
                    family = "Waggoner",
                    role = c("aut", "cre"),
                    email = "philip.waggoner@gmail.com")
as necessary.
Maintainer: ‘Vygantas Butkus <Vygantas.Butkus@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vygantas",
                    family = "Butkus",
                    role = c("aut", "cre"),
                    email = "vygantas.butkus@gmail.com")
as necessary.
checkRd: (-1) DataSets.Rd:10: Lost braces; missing escapes or markup?
    10 | \format{the \code{PvarQuantileDF} is a \code{data.frame} with fields \code{prob} an {Qaunt}. 
       |                                                                                     ^
Maintainer: ‘Ryota Suzuki <suzuki@ef-prime.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ryota",
                      family = "Suzuki",
                      role = c("aut", "cre"),
                      email = "suzuki@ef-prime.com"),
               person(given = "Yoshikazu",
                      family = "Terada",
                      role = "aut",
                      email = "terada@sigmath.es.osaka-u.ac.jp"),
               person(given = "Hidetoshi",
                      family = "Shimodaira",
                      role = "aut",
                      email = "shimo@i.kyoto-u.ac.jp"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘da.Rd’ ‘da_object_oriented_functions.R’
    ‘higher_level_disprop_analysis.R’ ‘lower_level_disprop_analysis.R’
    ‘print.da.Rd’
checkRd: (-1) pvlrt.Rd:42: Lost braces; missing escapes or markup?
    42 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^
checkRd: (-1) r_contin_table_zip.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{no_zi_idx}{List of pairs {(i, j)} where zero inflation is not allowed. To
       |                                ^
Maintainer: ‘Thiago Santos <thiago.santos@ufvjm.edu.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thiago",
                    family = "Santos",
                    role = c("aut", "cre"),
                    email = "thiago.santos@ufvjm.edu.br")
as necessary.
Maintainer: ‘Tianchen Xu <zjph602xutianchen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianchen",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "zjph602xutianchen@gmail.com",
                    comment = c(ORCID = "0000-0002-0102-7630"))
as necessary.
'library' or 'require' calls not declared from:
  ‘Hmisc’ ‘car’ ‘dplyr’ ‘ggplot2’
Maintainer: ‘Chris Aberson <chris.aberson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Aberson",
                    role = c("aut", "cre"),
                    email = "chris.aberson@gmail.com")
as necessary.
Maintainer: ‘Pengcheng Lu <plu2@kumc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pengcheng",
                      family = "Lu",
                      role = c("aut", "cre"),
                      email = "plu2@kumc.edu"),
               person(given = "Junhao",
                      family = "Liu",
                      role = "aut"),
               person(given = "Devin",
                      family = "Koestler",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pwrFDR.R’
checkRd: (-1) aid_st2.Rd:6: Escaped LaTeX specials: \&
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘pwt8.0.Rd’:
    http://dx.doi.org/10.15141/S5159X
    http://dx.doi.org/10.1016/j.jdeveco.2012.10.001
  File ‘pwt8.1.Rd’:
    http://dx.doi.org/10.15141/S5NP4S
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘pwt9.0.Rd’:
    https://doi.org/10.15141/S5J01T
  File ‘pwt9.1.Rd’:
    https://doi.org/10.15141/S50T0R
Maintainer: ‘Achim Zeileis <Achim.Zeileis@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Tyler Burleigh [aut] (https://twitter.com/tylerburleigh), Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>), Solomon Messing [ctb], Sean Murphy [ctb], Jonathan Chang [ctb], Andrew Brown [ctb], Vineet Bansal [cre]’
  Authors@R: ‘Tyler Burleigh [aut] (twitter: https://twitter.com/tylerburleigh), Thomas J. Leeper [aut] (ORCID: <https://orcid.org/0000-0003-4097-6326>), Solomon Messing [ctb], Sean Murphy [ctb], Jonathan Chang [ctb], Andrew Brown [ctb], Vineet Bansal [cre]’
Maintainer: ‘Minato Nakazawa <minato-nakazawa@umin.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Minato",
                    family = "Nakazawa",
                    role = c("aut", "cre"),
                    email = "minato-nakazawa@umin.net")
as necessary.
checkRd: (-1) crosstab.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crosstab.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  univariate_plot.Rd: ggplot2, patchwork
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"),
               person(given = "Tomasz",
                      family = "Zadlo",
                      role = "aut"))
as necessary.
checkRd: (-1) srswrRe.Rd:10: Lost braces
    10 |   \item{listRanef}{{\emph{ranef(model)}} object where {\emph{model}} is an { \emph{lmer}} object.}
       |                                                                            ^
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzhang@wpi.edu")
as necessary.

The Description field contains
  <arXiv:2005.00905>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ayush Agarwal<ayush.agarwal50@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ayush",
                      family = "Agarwal",
                      role = c("aut", "cre"),
                      email = "ayush.agarwal50@gmail.com"),
               person(given = "Dootika",
                      family = "Vats",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tom Pike <tpike@lincoln.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Pike",
                    role = c("aut", "cre"),
                    email = "tpike@lincoln.ac.uk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘qb_records.R’
Maintainer: ‘Ingo Rohlfing <i.rohlfing@uni-koeln.de>’

The BugReports field in DESCRIPTION has
  https://github.com/ingorohlfing/qcapower
which should likely be
  https://github.com/ingorohlfing/qcapower/issues
instead.
Maintainer: ‘Jirka Lewandowski <jirka.lewandowski@wzb.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jirka",
                    family = "Lewandowski",
                    role = c("aut", "cre"),
                    email = "jirka.lewandowski@wzb.eu")
as necessary.
Maintainer: ‘Luca Scrucca <luca.scrucca@unipg.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Peter J. van der Most <p.j.van.der.most@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = c("aut", "cre"),
                      email = "p.j.van.der.most@umcg.nl"),
               person(given = c("Leanne", "K."),
                      family = "Kupers",
                      role = "aut"),
               person(given = "Ilja",
                      family = "Nolte",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter J. van der Most <p.j.van.der.most@umcg.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "J."),
                      family = "van der Most",
                      role = c("aut", "cre"),
                      email = "p.j.van.der.most@umcg.nl"),
               person(given = c("Ilja", "M."),
                      family = "Nolte",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alireza Lorzadeh <alorzadeh@bcgsc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alireza",
                    family = "Lorzadeh",
                    role = c("aut", "cre"),
                    email = "alorzadeh@bcgsc.ca")
as necessary.
Maintainer: ‘Tinniam V Ganesh<tvganesh.85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tinniam", "V"),
                    family = "Ganesh",
                    role = c("aut", "cre"),
                    email = "tvganesh.85@gmail.com")
as necessary.
Maintainer: ‘Xuejun Ma <yinuoyumi@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuejun",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "yinuoyumi@163.com"),
               person(given = "Jingxiao",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Jingke",
                      family = "Zhou",
                      role = "aut"))
as necessary.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tyler",
                    family = "Rinker",
                    role = c("aut", "cre"),
                    email = "tyler.rinker@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘David Jungreis <dbjungreis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Jungreis",
                      role = c("aut", "cre"),
                      email = "dbjungreis@gmail.com"),
               person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"))
as necessary.
Maintainer: ‘Indranil Ghosh <indranilg49@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Indranil",
                    family = "Ghosh",
                    role = c("aut", "cre"),
                    email = "indranilg49@gmail.com")
as necessary.

The Description field contains
  theoretic models (Flitney and Abbott 2002) <arXiv:quant-ph/0208069>.
  1998) <arXiv:quant-ph/9804010>, Prisoner's Dilemma (J. Orlin Grabbe
  2005) <arXiv:quant-ph/0506219>, Two Person Duel (Flitney and Abbott
  2004) <arXiv:quant-ph/0305058>, Battle of the Sexes (Nawaz and Toor
  2004) <arXiv:quant-ph/0110096>, Hawk and Dove Game (Nawaz and Toor
  2010) <arXiv:quant-ph/0108075>, Newcomb's Paradox (Piotrowski and
  Sladkowski 2002) <arXiv:quant-ph/0202074> and Monty Hall Problem
  (Flitney and Abbott 2002) <arXiv:quant-ph/0109035>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wagner Santos de Lima <wagnersantos.ufs@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emerson", "Luis", "de", "Santa", "Helena", "Wagner", "Santos", "de", "Lima"),
                      family = "<wagnersantos.ufs@hotmail.com>",
                      role = "aut",
                      email = "wagnersantos.ufs@hotmail.com"),
               person(given = c("Wagner", "Santos"),
                      family = "de Lima",
                      role = "cre",
                      email = "wagnersantos.ufs@hotmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘qgis_run_algorithm_p.Rd’
Maintainer: ‘Sacha Epskamp <mail@sachaepskamp.com>’

The BugReports field in DESCRIPTION has
  https://github.com/SachaEpskamp/qgraph
which should likely be
  https://github.com/SachaEpskamp/qgraph/issues
instead.
Maintainer: ‘ManHsia Yang <ymh@tari.gov.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "ManHsia",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "ymh@tari.gov.tw")
as necessary.
checkRd: (-1) qif.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) qif.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Liam Bressler <liam.bressler@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liam",
                    family = "Bressler",
                    role = c("aut", "cre"),
                    email = "liam.bressler@yale.edu")
as necessary.
checkRd: (-1) qmethod-package.Rd:109: Lost braces
   109 |   \item Van Exel, J., and G. de Graaf, 2005. \emph{Q Methodology: A Sneak Preview}\cr \url{https://qmethodblog.files.wordpress.com/2016/01/qmethodologyasneakpreviewreferenceupdate.pdf}{Available at this link}.
       |                                                                                                                                                                                         ^
checkRd: (-1) qmethod-package.Rd:110: Lost braces
   110 |   \item Brown, S. R., 1980. \emph{Political subjectivity: Applications of Q methodology in political science}, New Haven, CT: Yale University Press.\cr \url{https://qmethodblog.files.wordpress.com/2016/01/brown-1980-politicalsubjectivity.pdf}{Available at this link}.
       |                                                                                                                                                                                                                                                   ^
Maintainer: ‘Juan Gea <juangea@geax.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Gea"),
                      family = "Rosat",
                      role = "aut"),
               person(given = c("Ramon", "Martínez", "Coscollà"),
                      family = ".",
                      role = "aut"),
               person(given = "Juan",
                      family = "Gea",
                      role = "cre",
                      email = "juangea@geax.net"))
as necessary.
Maintainer: ‘Wilson Jr. Aala <s98107020@gs.ncku.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Wilson", "Jr."),
                    family = "Aala",
                    role = c("aut", "cre"),
                    email = "s98107020@gs.ncku.edu.tw")
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_qqboxplot.Rd: geom_boxplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Stephen Turner <vustephen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "vustephen@gmail.com")
as necessary.
Maintainer: ‘Wayne Oldford <rwoldford@uwaterloo.ca>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘qqtest.Rd’:
    https://doi.org/10.1080/00031305.2015.1090338
checkRd: (-1) hideLocation.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{trueLoc}{A vector of one or more numbers in the set {1, 2, ..., nSubjects} whose locations are to be hidden.}
       |                                                           ^
checkRd: (-1) hideLocation.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{nSubjects}{An integer larger than 1 used to define the set {1, 2, ..., nSubjects}.}
       |                                                                  ^
Maintainer: ‘Robert Stine  <stine@upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robert",
                    family = "Stine",
                    role = c("aut", "cre"),
                    email = "stine@upenn.edu")
as necessary.
Maintainer: ‘Xiaoyu Song <xs2148@cumc.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiaoyu",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "xs2148@cumc.columbia.edu")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘qr_vcard.R’
Maintainer: ‘Karl Gregory <gregorkb@stat.sc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karl",
                    family = "Gregory",
                    role = c("aut", "cre"),
                    email = "gregorkb@stat.sc.edu")
as necessary.
Maintainer: ‘Bob Rudis <bob@rud.is>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Yan Li <bluefatterplaydota@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yan",
                      family = "Li",
                      role = c("aut", "cre", "trl"),
                      email = "bluefatterplaydota@gmail.com"),
               person(given = "Matthew",
                      family = "Sperrin",
                      role = c("aut", "ctb")),
               person(given = "ClinRisk",
                      family = "Ltd.",
                      role = "cph"),
               person(given = c("Tjeerd", "Pieter"),
                      family = "van Staa",
                      role = c("aut", "ths")))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/qris.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘all_new_functions.R’
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"))
as necessary.
Maintainer: ‘Maria de los Angeles Resa <maria@stat.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maria", "de", "los", "Angeles"),
                      family = "Resa",
                      role = c("aut", "cre"),
                      email = "maria@stat.columbia.edu"),
               person(given = "Birol",
                      family = "Emir",
                      role = "aut"),
               person(given = "Javier",
                      family = "Cabrera",
                      role = "aut"))
as necessary.
'::' or ':::' imports not declared from:
  ‘simsalapar’ ‘stabledist’
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Max",
                    family = "Kuhn",
                    role = c("aut", "cre"),
                    email = "mxkuhn@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
File ‘qs/libs/qs.so’:
  Found non-API calls to R: ‘CLOENV’, ‘ENCLOS’, ‘FRAME’, ‘HASHTAB’,
    ‘IS_S4_OBJECT’, ‘LEVELS’, ‘OBJECT’, ‘PRENV’, ‘Rf_allocSExp’,
    ‘SETLEVELS’, ‘SET_CLOENV’, ‘SET_ENCLOS’, ‘SET_FRAME’,
    ‘SET_HASHTAB’, ‘SET_PRENV’, ‘SET_S4_OBJECT’, ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Maintainer: ‘Robrecht Cannoodt <rcannood@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ivan D. Pavicevic <ivanp84@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ivan", "D."),
                    family = "Pavicevic",
                    role = c("aut", "cre"),
                    email = "ivanp84@gmail.com")
as necessary.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Wen",
                      family = "Yang-Jun",
                      role = "aut"),
               person(given = "Wang",
                      family = "Shi-Bo",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
Maintainer: ‘Yuanming Zhang<soyzhang@mail.hzau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhou",
                      family = "Ya-Hui",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Ya-Wen",
                      role = "aut"),
               person(given = "Wen",
                      family = "Yang-Jun",
                      role = "aut"),
               person(given = "Wang",
                      family = "Shi-Bo",
                      role = "aut"),
               person(given = "Zhang",
                      family = "Yuan-Ming",
                      role = "aut"),
               person(given = "Yuanming",
                      family = "Zhang",
                      role = "cre",
                      email = "soyzhang@mail.hzau.edu.cn"))
as necessary.
Maintainer: ‘Brian S. Yandell <brian.yandell@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Elias", "Chaibub"),
                      family = "Neto",
                      role = "aut",
                      email = "echaibub@hotmail.com"),
               person(given = c("Brian", "S"),
                      family = "Yandell",
                      role = "aut",
                      email = "brian.yandell@wisc.edu"),
               person(given = c("Brian", "S."),
                      family = "Yandell",
                      role = "cre",
                      email = "brian.yandell@wisc.edu"))
as necessary.
Maintainer: ‘Brian S. Yandell <brian.yandell@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Elias", "Chaibub"),
                      family = "Neto",
                      role = "aut",
                      email = "echaibub@hotmail.com"),
               person(given = c("Brian", "S."),
                      family = "yandell",
                      role = c("aut", "cre"),
                      email = "brian.yandell@wisc.edu"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Pscdbp.Rd’:
    http://dx.doi.org/10.1371/journal.pgen.0020130
    http://dx.doi.org/10.1214/09-AOAS288
  File ‘bic.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
  File ‘mcmc.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
    http://dx.doi.org/10.1007/s10994-008-5057-7
  File ‘parents.Rd’:
    http://dx.doi.org/10.1214/09-AOAS288
checkRd: (-1) IPWE_mean_IndCen.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:61-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IPWE_mean_IndCen.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{case}{string. One of {"a", "b", "c"}, corresponding to three models.}
       |                            ^
checkRd: (-1) simJLSDdata.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:32-34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simJLSDdata.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Siva Rajesh Kasa <sivarajesh.kasa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Kasa",
                      role = "aut"),
               person(given = c("Siva", "Rajesh"),
                      family = "Kasa",
                      role = "cre",
                      email = "sivarajesh.kasa@gmail.com"))
as necessary.
Maintainer: ‘Berwin A. Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Berwin", "A.", "Turlach", "R", "port", "by", "Andreas", "Weingessel", "<Andreas.Weingessel@ci.tuwien.ac.at>", "Fortran", "contributions", "from", "Cleve", "Moler"),
                      family = "dpodi/LINPACK)",
                      role = "aut",
                      email = "Andreas.Weingessel@ci.tuwien.ac.at",
                      comment = "a modified version of"),
               person(given = c("Berwin", "A."),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
Found the following significant warnings:
  elastic_net.cpp:180:30: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  elastic_net.cpp:255:33: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  quadratic.cpp:43:29: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/quadrupen.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
checkRd: (-1) find_lcp.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:63-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) find_lcp.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:18-19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summarize_lcps.Rd:23-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) als_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data_qc_mapping.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data_qc_mapping.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) als_data_qc_mapping.Rd:13: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Joachim Zuckarelli <joachim@zuckarelli.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joachim",
                    family = "Zuckarelli",
                    role = c("aut", "cre"),
                    email = "joachim@zuckarelli.de")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Cinzia Viroli <cinzia.viroli@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marco",
                      family = "Berrettini",
                      role = "aut"),
               person(given = "Christian",
                      family = "Hennig",
                      role = "aut"),
               person(given = "Cinzia",
                      family = "Viroli",
                      role = c("aut", "cre"),
                      email = "cinzia.viroli@unibo.it"))
as necessary.
Maintainer: ‘Zoe Ashwood <zashwood@law.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zoe",
                      family = "Ashwood",
                      role = c("aut", "cre"),
                      email = "zashwood@law.stanford.edu"),
               person(given = "Becky",
                      family = "Elias",
                      role = "aut",
                      email = "Becky.Elias@kingcounty.gov"),
               person(given = c("Daniel", "E."),
                      family = "Ho",
                      role = "aut",
                      email = "dho@law.stanford.edu"))
as necessary.
Found the following calls to attach():
File ‘quantmod/R/attachSymbols.R’:
  attach(NULL, pos = pos, name = DB$name)
  attach(NULL, pos = pos, name = DB$name)
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Teng Fei <tfei@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Teng",
                      family = "Fei",
                      role = c("aut", "cre"),
                      email = "tfei@emory.edu"),
               person(given = "Tianwei",
                      family = "Yu",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas D. Fletcher <t.d.fletcher05@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "D."),
                    family = "Fletcher",
                    role = c("aut", "cre"),
                    email = "t.d.fletcher05@gmail.com")
as necessary.
Found the following significant warnings:
  awgl.cpp:451:30: warning: ‘eT arma::subview_col<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/QuantRegGLasso.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  logLik.gcrq.Rd: logLik.rq
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ivan Fernandez-Val <ivanf@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lipsitz",
                      role = "aut"),
               person(given = "Alexandre",
                      family = "Belloni",
                      role = "aut"),
               person(given = "Victor",
                      family = "Chernozhukov",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Fernandez-Val",
                      role = c("aut", "cre"),
                      email = "ivanf@bu.edu"))
as necessary.
Maintainer: ‘Salonik Resch <resc0059@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Salonik",
                    family = "Resch",
                    role = c("aut", "cre"),
                    email = "resc0059@umn.edu")
as necessary.

The Description field contains
  <arXiv:1411.4028>, and a variational quantum classifier (Schuld 2018)
  <arXiv:1804.00633>. Can be used with the gridsynth algorithm
  <arXiv:1212.6253> to perform decomposition into the Clifford+T set.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) quarries.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:20-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:23-25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) quarries.Rd:26-28: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘quax.Rd’
Maintainer: ‘Laura Anderlucci <laura.anderlucci@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Hennig",
                      role = "aut"),
               person(given = "Cinzia",
                      family = "Viroli",
                      role = "aut"),
               person(given = "Laura",
                      family = "Anderlucci",
                      role = c("aut", "cre"),
                      email = "laura.anderlucci@unibo.it"))
as necessary.
Maintainer: ‘Takahiko Koizumi <takahiko.koizumi@riken.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takahiko",
                      family = "Koizumi",
                      role = c("aut", "cre"),
                      email = "takahiko.koizumi@riken.jp"),
               person(given = "Kenta",
                      family = "Suzuki",
                      role = "aut"),
               person(given = "Yasunori",
                      family = "Ichihashi",
                      role = "aut"))
as necessary.
Maintainer: ‘Pedro Canadilla <pedro.canadilla@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pedro",
                    family = "Canadilla",
                    role = c("aut", "cre"),
                    email = "pedro.canadilla@gmail.com")
as necessary.
Maintainer: ‘Linares Daniel <danilinares@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) display_table.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{normtest}{A character indicating test of normality, the default method is \code{\link{shapiro.test}} when sample size no more than 5000, otherwise \code{\link[nortest]{lillie.test}} {Kolmogorov-Smirnov} is used, see package \strong{nortest} for more methods.Use 'shapiro.test', 'lillie.test', 'ad.test', etc to specify methods.}
       |                                                                                                                                                                                             ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘quickReg.Rmd’ using rmarkdown

Quitting from quickReg.Rmd:130-162 [plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::labels> object is invalid:
- every label must be named.
---
Backtrace:
    ▆
 1. └─ggplot2::labs(list(title = "Regression Model", x = "variables"))
 2.   └─ggplot2::class_labels(args)
 3.     └─S7::new_object(labels)
 4.       └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'quickReg.Rmd' failed with diagnostics:
<ggplot2::labels> object is invalid:
- every label must be named.
--- failed re-building ‘quickReg.Rmd’

SUMMARY: processing the following file failed:
  ‘quickReg.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘A. Luise Kuehn <luise.kuehn@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("A.", "Luise"),
                    family = "Kuehn",
                    role = c("aut", "cre"),
                    email = "luise.kuehn@uni-greifswald.de")
as necessary.
Maintainer: ‘Radford Neal <radfordneal@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Radford",
                    family = "Neal",
                    role = c("aut", "cre"),
                    email = "radfordneal@gmail.com")
as necessary.
File ‘quotedargs/libs/quotedargs.so’:
  Found non-API calls to R: ‘ENCLOS’, ‘LEVELS’, ‘PRCODE’, ‘PRENV’,
    ‘PRVALUE’, ‘Rf_allocSExp’, ‘SETLEVELS’, ‘SET_NAMED’, ‘SET_PRCODE’,
    ‘SET_PRENV’, ‘SET_PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Vitor Marques <vmrodriguespro@gmail.com>’

The Description field contains
  <arXiv:quant-ph/9706062v2>; C. Godsil (2011) <arXiv:1103.2578v3>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thomas Obadia <thomas.obadia@pasteur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pierre-Yves",
                      family = "Boelle",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Obadia",
                      role = c("aut", "cre"),
                      email = "thomas.obadia@pasteur.fr"))
as necessary.
checkRd: (-1) est.R0.ML.Rd:98: Lost braces
    98 | Supplementary Material S1 from \doi{10.1186/1472-6947-12-147}{Obadia et al., 2012}.
       |                                                              ^
checkRd: (-1) plot.R0.R.Rd:20: Lost braces
    20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from one estimation method.
       |                                                      ^
checkRd: (-1) plot.R0.sR.Rd:20: Lost braces
    20 | Called for side effect. Draws all \eqn{R_{0}} or /eqn{R(t)} values from an
       |                                                      ^
Maintainer: ‘Denise Rava <drava@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denise",
                    family = "Rava",
                    role = c("aut", "cre"),
                    email = "drava@ucsd.edu")
as necessary.

The Description field contains
  selection process. Rava, D. and Xu, R. (2020) <arXiv:2003.09460>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) do_admb.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) do_admb.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_pars.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_pars.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Andrea Fasulo <fasulo@istat.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrea", "Fasulo,Giulio", "Barcaroli,Stefano", "Falorsi,Alessio", "Guandalini,Daniela", "Pagliuca,Marco", "Dionisio"),
                      family = "Terribili",
                      role = "aut"),
               person(given = "Andrea",
                      family = "Fasulo",
                      role = "cre",
                      email = "fasulo@istat.it"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/r2country
which should likely be
  https://github.com/oobianom/r2country/issues
instead.
Maintainer: ‘Robin Van Oirbeek <robin.vanoirbeek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robin",
                    family = "Van Oirbeek",
                    role = c("aut", "cre"),
                    email = "robin.vanoirbeek@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  runMLwiN.Rd: mcmc.list
  sixway.Rd: mcmc, mcmc.list
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following calls to attach():
File ‘R2OpenBUGS/R/attach.all.R’:
  attach(x, name = name)
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Obinna",
                    family = "Obianom",
                    role = c("aut", "cre"),
                    email = "idonshayo@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/r2shortcode
which should likely be
  https://github.com/oobianom/r2shortcode/issues
instead.
Found the following calls to attach():
File ‘R2WinBUGS/R/attach.all.R’:
  attach(x, name = name)
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Sam Wilks <sw463@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sam",
                    family = "Wilks",
                    role = c("aut", "cre"),
                    email = "sw463@cam.ac.uk")
as necessary.
Maintainer: ‘Thomas Bock <thsteinbock@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Bock",
                    role = c("aut", "cre"),
                    email = "thsteinbock@web.de")
as necessary.
Maintainer: ‘Ian G. Taylor <Ian.Taylor@noaa.gov>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) r4ss-package.Rd:9: Lost braces; missing escapes or markup?
     9 | A collection of R functions for use with Stock Synthesis, a fisheries stock assessment modeling platform written in ADMB by Dr. Richard D. Methot at the NOAA Northwest Fisheries Science Center. The functions include tools for summarizing and plotting results, manipulating files, visualizing model parameterizations, and various other common stock assessment tasks. This version of '{r4ss}' is compatible with Stock Synthesis versions 3.24 through 3.30 (specifically version 3.30.19.01, from April 2022).
       |                                                                                                                                                                                                                                                                                                                                                                                                ^
checkRd: (-1) extract_class.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) extract_class.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) extract_class.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) post_RA_fits.Rd:61: Lost braces; missing escapes or markup?
    61 |     \item{\code{H(po_{bm_{n.bm}}, po_act)}:}{ last benchmark prior bm_{n.bm} inducing the fit \code{fits.bm[[n.bm]]} and actual prior}
       |                                                                       ^
Maintainer: ‘Andrew Taylor Burchill <andrew.burchill@asu.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘brute_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘codes_to_colors.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘exampleGUI.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘how_many.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘how_robust.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘rabi.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘rs_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘simple_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
  File ‘tweaked_IDs.Rd’:
    https://doi.org/10.1016/j.anbehav.2019.05.013
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ao_get_leaners_progress_by_course.R’
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘José Matute <jmatuteflores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Doug Nychka <nychka@mines.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Doug",
                      family = "Nychka",
                      role = c("aut", "cre"),
                      email = "nychka@mines.edu"),
               person(given = "Eric",
                      family = "Gilleland",
                      role = "aut"),
               person(given = "Liangying",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Tim",
                      family = "Hoar",
                      role = "aut"),
               person(given = "Kate",
                      family = "Young",
                      role = "aut"))
as necessary.
Maintainer: ‘David Moriña Soler <david.morina@uab.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Moriña",
                      role = c("aut", "cre"),
                      email = "david.morina@uab.cat",
                      comment = "Barcelona Graduate School of Mathematics"),
               person(given = "Manuel",
                      family = "Higueras",
                      role = "aut",
                      comment = "Basque Center for Applied Mathematics"),
               person(given = "Pedro",
                      family = "Puig",
                      role = "aut",
                      comment = "Universitat Autònoma de Barcelona"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Maintainer: ‘Mark Hogue <mark.hogue.chp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Hogue",
                    role = c("aut", "cre"),
                    email = "mark.hogue.chp@gmail.com")
as necessary.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johannes",
                      family = "Burkhardt",
                      role = c("aut", "cre"),
                      email = "johannes.burkhardt@gmail.com"),
               person(given = "Matthias",
                      family = "Bannert",
                      role = "aut",
                      email = "matthias.bannert@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_element.Rd’
Maintainer: ‘Dione Pereira Cardoso <cardoso.dione@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dione", "Pereira"),
                      family = "Cardoso",
                      role = c("aut", "cre"),
                      email = "cardoso.dione@gmail.com"),
               person(given = c("Edilson", "Marcelino"),
                      family = "Silva",
                      role = "aut"),
               person(given = c("Paulo", "Cesar"),
                      family = "Ossani",
                      role = "aut"),
               person(given = c("Marx", "Leandro", "Naves"),
                      family = "Silva",
                      role = "ctb"),
               person(given = c("Joel", "Augusto"),
                      family = "Muniz",
                      role = "ctb"),
               person(given = c("Daniel", "Furtado"),
                      family = "Ferreira",
                      role = "ctb"),
               person(given = c("Junior", "Cesar"),
                      family = "Avanzi",
                      role = "ctb"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘RFactor.Rd’:
    \keyword{
        Erosivity index; R-Factor; Universal S [TRUNCATED]
  File ‘RainFallExample.Rd’:
    \keyword{
          Erosivity index; R-Factor; Universal [TRUNCATED]
  File ‘RainfallErosivityFactor.Rd’:
    \keyword{
        Erosivity index; R-Factor; Universal S [TRUNCATED]
Maintainer: ‘Jost von Hardenberg <j.vonhardenberg@isac.cnr.it>’

The BugReports field in DESCRIPTION has
  https://github.com/jhardenberg/rainfarmr
which should likely be
  https://github.com/jhardenberg/rainfarmr/issues
instead.
Maintainer: ‘Kory D. Johnson <korydjohnson@gmail.com>’

The Description field contains
  <arXiv:1510.06322>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Erica Ponzi <erica.ponzi@medisin.uio.no>’

The Description field contains
  <arXiv:2101.09110>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Phil Mike Jones <philmikejones@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Veronica Nava <veronicanava245@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Veronica",
                      family = "Nava",
                      role = c("aut", "cre"),
                      email = "veronicanava245@gmail.com"),
               person(given = c("Maria", "Luce"),
                      family = "Frezzotti",
                      role = "ctb"),
               person(given = "Barbara",
                      family = "Leoni",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘RamanMP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: peak.finder
> ### Title: Peaks identification
> ### Aliases: peak.finder
> ### Keywords: peaks
> 
> ### ** Examples
> 
> data("MPdatabase")
> peak.data<-peak.finder(MPdatabase[,c(1,7)], threshold = 500, m=7)
Error: <ggplot2::element_text> object properties are invalid:
- @size must be <NULL>, <integer>, or <double>, not <character>
Execution halted
Maintainer: ‘Chapman Siu <chpmn.siu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chapman",
                    family = "Siu",
                    role = c("aut", "cre"),
                    email = "chpmn.siu@gmail.com")
as necessary.
Maintainer: ‘Xinwei Ma <x1ma@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matias", "D."),
                      family = "Cattaneo",
                      role = "aut"),
               person(given = "Paul",
                      family = "Cheung",
                      role = "aut"),
               person(given = "Xinwei",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "x1ma@ucsd.edu"),
               person(given = "Yusufcan",
                      family = "Masatlioglu",
                      role = "aut"),
               person(given = "Elchin",
                      family = "Suleymanov",
                      role = "aut"))
as necessary.

The Description field contains
  Cattaneo, Ma, Masatlioglu and Suleymanov (2020) <arXiv:1712.03448> and
  Cattaneo, Cheung, Ma, and Masatlioglu (2022) <arXiv:2110.10650>, which
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zhiyong Zhang <zzhang4@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zzhang4@nd.edu"),
               person(given = "Jack",
                      family = "McArdle",
                      role = "aut"),
               person(given = "Aki",
                      family = "Hamagami",
                      role = "aut"),
               person(given = c("&", "Kevin"),
                      family = "Grimm",
                      role = "aut"))
as necessary.
Maintainer: ‘Zach Branson <zach@stat.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zach",
                    family = "Branson",
                    role = c("aut", "cre"),
                    email = "zach@stat.cmu.edu")
as necessary.

The Description field contains
  variable. See Branson (2021) <arXiv:1804.08760> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel F. Schmidt <daniel.schmidt@monash.edu>’

The Description field contains
  <arXiv:1809.05212>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘randcorr-package.Rd’:
    \keyword{matrix,}
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Grace",
                      family = "Deng",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu"))
as necessary.
Maintainer: ‘Ron Ammar <ron.ammar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ron",
                    family = "Ammar",
                    role = c("aut", "cre"),
                    email = "ron.ammar@gmail.com")
as necessary.
Maintainer: ‘Peter Langfelder <peter.langfelder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lin",
                      family = "Song",
                      role = "aut"),
               person(given = "Peter",
                      family = "Langfelder",
                      role = c("aut", "cre"),
                      email = "peter.langfelder@gmail.com"))
as necessary.
Maintainer: ‘Joseph J. Lee <joseph.j.lee@post.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "J."),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "joseph.j.lee@post.harvard.edu"),
               person(given = "Tirthankar",
                      family = "Dasgupta",
                      role = "aut"))
as necessary.
Maintainer: ‘D. Labes <detlewlabes@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "D.",
                    family = "Labes",
                    role = c("aut", "cre"),
                    email = "detlewlabes@gmx.de")
as necessary.
checkRd: (-1) makeDesignMatrix.Rd:16: Lost braces; missing escapes or markup?
    16 | is randomized to a certain treatment {j}, the entry of \code{(i,j)} of the
       |                                      ^
File ‘randomizr/libs/randomizr.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Saip Ciss <saip.ciss@wanadoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Saip",
                    family = "Ciss",
                    role = c("aut", "cre"),
                    email = "saip.ciss@wanadoo.fr")
as necessary.
Maintainer: ‘Steven Sanderson <spsanderson@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://lifecycle.r-lib.org/articles/stages.html##experimental
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Siddharth R <r.siddharthcse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aghila",
                      family = "G",
                      role = "aut"),
               person(given = "Siddharth",
                      family = "R",
                      role = c("aut", "cre"),
                      email = "r.siddharthcse@gmail.com"))
as necessary.
Maintainer: ‘Mihai Valcu <valcu@orn.mpg.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jay Burns <jay.burns@sruc.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Vasyl Pihur <vpihur@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Vasyl",
                      family = "Pihur",
                      role = c("aut", "cre"),
                      email = "vpihur@gmail.com"),
               person(given = "Somnath",
                      family = "Datta",
                      role = "aut",
                      email = "somnath.datta@louisville.edu"),
               person(given = "Susmita",
                      family = "Datta",
                      role = "aut",
                      email = "susmita.datta@louisville.edu"))
as necessary.
Maintainer: ‘Quentin Grimonprez <quentingrim@yahoo.fr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhaozhi Qian <qianzhaozhi@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhaozhi",
                    family = "Qian",
                    role = c("aut", "cre"),
                    email = "qianzhaozhi@connect.hku.hk")
as necessary.
Maintainer: ‘Frank Konietschke <frank.konietschke@charite.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frank",
                      family = "Konietschke",
                      role = c("aut", "cre"),
                      email = "frank.konietschke@charite.de"),
               person(given = "Sarah",
                      family = "Friedrich",
                      role = "aut"),
               person(given = "Edgar",
                      family = "Brunner",
                      role = "aut"),
               person(given = "Markus",
                      family = "Pauly",
                      role = "aut"))
as necessary.
checkRd: (-1) grottaBar.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grottaBar.Rd:83: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Hsiuying Wang <wang@stat.nycu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hsiuying",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wang@stat.nycu.edu.tw"),
               person(given = "Yu-Chun",
                      family = "Lin",
                      role = "aut"),
               person(given = "Wan-Ting",
                      family = "Huang",
                      role = "aut"))
as necessary.
checkRd: (-1) rankL2R.Rd:18: Lost braces; missing escapes or markup?
    18 | where the vector dimension is 2^{response.number}.}
       |                                 ^
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Running examples in ‘RapidoPGS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rapidopgs_single
> ### Title: Compute PGS from GWAS summary statistics using posteriors from
> ###   Wakefield's approximate Bayes Factors
> ### Aliases: rapidopgs_single
> 
> ### ** Examples
> 
> sumstats <- data.table(SNPID=c("rs139096444","rs3843766","rs61977545", "rs544733737",
+ 		"rs2177641", "rs183491817", "rs72995775","rs78598863", "rs1411315"), 
+ 		CHR=c(4,20,14,2,4,6,6,21,13), 
+ 		BP=c(1479959, 13000913, 29107209, 203573414, 57331393, 11003529, 149256398, 
+ 				25630085, 79166661), 
+ 		REF=c("C","C","C","T","G","C","C","G","T"), 
+ 		ALT=c("A","T","T","A","A","A","T","A","C"), 
+ 		BETA=c(0.012,0.0079,0.0224,0.0033,0.0153,0.058,0.0742,0.001,-0.0131),
+ 		SE=c(0.0099,0.0066,0.0203,0.0171,0.0063,0.0255,0.043,0.0188,0.0074))
> 
> PGS  <- rapidopgs_single(sumstats,  trait = "cc")
Assigning LD blocks...
Loading required namespace: GenomeInfoDb
Failed with error:  ‘there is no package called ‘GenomeInfoDb’’
Error in .requirePackage(package) : 
  unable to load required package ‘GenomeInfoDb’
Calls: rapidopgs_single ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Maintainer: ‘Markus Loecher <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"),
               person(given = "Madhav",
                      family = "Kumar",
                      role = "aut",
                      email = "madhavkumar2005@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘evds_table_api.R’ ‘excel_internal.R’ ‘request_funcs.R’
    ‘sp_df_utils.R’
checkRd: (-1) user_log_dir.Rd:48: Lost braces
    48 | \\env{$XDG_CACHE_HOME} if defined
       |      ^
Maintainer: ‘Luis Cayuela <luis.cayuela@urjc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Cayuela",
                      role = c("aut", "cre"),
                      email = "luis.cayuela@urjc.es"),
               person(given = c("Nicholas", "J."),
                      family = "Gotelli",
                      role = "aut"))
as necessary.
Maintainer: ‘Boris Leroy <leroy.boris@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Boris",
                    family = "Leroy",
                    role = c("aut", "cre"),
                    email = "leroy.boris@gmail.com")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "Jiali",
                      family = "Mei",
                      role = "aut"),
               person(given = c("authors", "of", "the", "ARPACK", "library.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Maintainer: ‘Johann Gaebler <me@jgaeb.com>’

The Description field contains
  Disparate Impact" Jung et al. (2024) <arXiv:1809.05651>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ye Tian <ye.t@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ye",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "ye.t@columbia.edu"),
               person(given = "Yang",
                      family = "Feng",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘findblocks_bc.Rd’ ‘getdata_bc.Rd’ ‘listdata_bc.Rd’ ‘opendata_bc.Rd’
    ‘utils.R’
Maintainer: ‘Joshua O'Brien <joshmobrien@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "O'Brien",
                    role = c("aut", "cre"),
                    email = "joshmobrien@gmail.com")
as necessary.
Maintainer: ‘Martin Seilmayer <m.seilmayer@hzdr.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "m.seilmayer@hzdr.de")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Tarak Shah <tarak.shah@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tarak",
                    family = "Shah",
                    role = c("aut", "cre"),
                    email = "tarak.shah@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ratematrix.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
checkRd: (-1) dbConnect-AthenaDriver-method.Rd:109-111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dbConnect-AthenaDriver-method.Rd:115-120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dbConnect-AthenaDriver-method.Rd:121-124: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dbConnect-AthenaDriver-method.Rd:125-127: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dbConnect-AthenaDriver-method.Rd:128-138: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Query.Rd: DBIConnection-class
  dbClearResult.Rd: DBIResult-class
  dbColumnInfo.Rd: DBIResult-class
  dbConnect-AthenaDriver-method.Rd: DBIDriver-class,
    DBIConnection-class
  dbDataType.Rd: DBIDriver-class, DBIConnection-class
  dbDisconnect.Rd: DBIConnection-class
  dbExistsTable.Rd: DBIConnection-class
  dbFetch.Rd: DBIResult-class
  dbGetInfo.Rd: DBIObject-class, DBIDriver-class, DBIConnection-class,
    DBIResult-class
  dbGetPartition.Rd: DBIConnection-class
  dbGetQuery.Rd: DBIConnection-class
  dbGetStatement.Rd: DBIResult-class
  dbGetTables.Rd: DBIConnection-class
  dbHasCompleted.Rd: DBIResult-class
  dbIsValid.Rd: DBIObject-class, DBIDriver-class, DBIConnection-class,
    DBIResult-class
  dbListFields.Rd: DBIConnection-class
  dbListTables.Rd: DBIConnection-class
  dbQuote.Rd: DBIConnection-class
  dbRemoveTable.Rd: DBIConnection-class
  dbShow.Rd: DBIConnection-class
  dbStatistics.Rd: dbSendQuery, DBIResult-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Waldemar", "W."),
                      family = "Koczkodaj",
                      role = "aut"),
               person(given = "Feng",
                      family = "Li",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "alicja.wolny-dominiak@ue.katowice.pl"))
as necessary.
checkRd: (-1) S1.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{m_bar}{the sample vector of moments for a specified vector $(h_{a,r},y)$}
       |                                                                      ^
checkRd: (-1) S1.Rd:16: Lost braces; missing escapes or markup?
    16 | \item{N_k}{index of the $ h_{a,r}$ function considered}
       |                             ^
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yixuan",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "yixuan.qiu@cos.name")
as necessary.
Maintainer: ‘Solveig Pospiech <s.pospiech@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Solveig",
                      family = "Pospiech",
                      role = c("aut", "cre"),
                      email = "s.pospiech@gmx.de"),
               person(given = "Wiebke",
                      family = "Fahlbusch",
                      role = "ctb"))
as necessary.
Maintainer: ‘Graham Williams <Graham.Williams@togaware.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) acquireAuditData.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) rattle.Rd:44: Escaped LaTeX specials: \_
Maintainer: ‘Ozvan Bocher <bocherozvan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ozvan",
                      family = "Bocher",
                      role = c("aut", "cre"),
                      email = "bocherozvan@gmail.com"),
               person(given = "Hervé",
                      family = "Perdry",
                      role = "aut"))
as necessary.
checkRd: (-1) rbm.haplos.power.Rd:35: Lost braces; missing escapes or markup?
    35 |   \item{simus.haplos}{ Which method to simulate the data, if \code{simus.haplos="freqs"}, {rbm.haplos.freqs()} is used, otherwise \code{rbm.haplos.thresholds()} is used.}
       |                                                                                           ^
Maintainer: ‘Davide Massidda <davide.massidda@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giulio",
                      family = "Vidotto",
                      role = "aut",
                      email = "giulio.vidotto@unipd.it"),
               person(given = "Stefano",
                      family = "Noventa",
                      role = "aut",
                      email = "stefano.noventa@uni-tuebingen.de"),
               person(given = "Davide",
                      family = "Massidda",
                      role = c("aut", "cre"),
                      email = "davide.massidda@gmail.com"),
               person(given = "Marco",
                      family = "Vicentini",
                      role = "aut",
                      email = "marco.vicentini@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘render_model.R’
Maintainer: ‘Amanda Rehbein <amanda.rehbein@usp.br>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BayesianOptimization.Rd: GP_fit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Wilson Freitas <wilson.freitas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wilson",
                    family = "Freitas",
                    role = c("aut", "cre"),
                    email = "wilson.freitas@gmail.com")
as necessary.
Maintainer: ‘Diego Gallardo <dgallardo@ubiobio.cl>’

The Description field contains
  Gallardo and Saulo <arXiv:2110.04428> The package also provides tools
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Failed with error:  ‘unused argument (quitely = TRUE)’

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
File ‘Rbeast/libs/Rbeast.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Author field differs from that derived from Authors@R
  Author:    ‘Wacek Kusnierczyk <waku@idi.ntnu.no>’
  Authors@R: ‘Wacek Kusnierczyk [aut, cre], Dirk Eddelbuettel [ctb], Berend Hasselman [ctb]’
Maintainer: ‘Jialun Zhang <reatank@foxmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jialun",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "reatank@foxmail.com"),
               person(given = "Zhilan",
                      family = "Fan",
                      role = "aut"),
               person(given = "Hang",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Abdelmoneim Amer Desouki <desouki@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Abdelmoneim", "Amer"),
                    family = "Desouki",
                    role = c("aut", "cre"),
                    email = "desouki@hhu.de")
as necessary.

The Description field contains
  Desouki, M. Roeder, A. Ngonga (2019) <arXiv:1903.10326>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marco Scutari <scutari@bnlearn.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Baptiste",
                      family = "Denis",
                      role = c("aut", "cre")),
               person(given = "Marco",
                      family = "Scutari",
                      role = c("ctb", "cre"),
                      email = "scutari@bnlearn.com"))
as necessary.
Maintainer: ‘Luke J. Keele <luke.keele@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luke", "J."),
                    family = "Keele",
                    role = c("aut", "cre"),
                    email = "luke.keele@gmail.com")
as necessary.
Maintainer: ‘Bahadir Yuzbasi <b.yzb@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bahadir",
                      family = "Yuzbasi",
                      role = c("aut", "cre"),
                      email = "b.yzb@hotmail.com"),
               person(given = "Mohammad",
                      family = "Arashi",
                      role = "aut"),
               person(given = "Fikri",
                      family = "Akdeniz",
                      role = "aut"))
as necessary.

The Description field contains
  Yuzbasi et al. (2019) <arXiv:1910.03660>. Special cases of this
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rbridge.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Serguei Rouzinov <rouzinovs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Serguei",
                      family = "Rouzinov",
                      role = c("aut", "cre"),
                      email = "rouzinovs@gmail.com"),
               person(given = "André",
                      family = "Berchtold",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/xiangzhou09/rbw
which should likely be
  https://github.com/xiangzhou09/rbw/issues
instead.
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Baoluo",
                      family = "Sun",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Sun and Tan (2020) <arXiv:2009.09286>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Amir Goldberg <amirgo@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amir",
                      family = "Goldberg",
                      role = c("aut", "cre"),
                      email = "amirgo@stanford.edu"),
               person(given = c("Sarah", "K."),
                      family = "Stein",
                      role = "aut"))
as necessary.
Maintainer: ‘Qiao Liu <liuqiao@stanford.edu>’

The Description field contains
  methods is given in Liu (2022) <arXiv:2212.05925>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Herdiantri Sufriyana <herdi@tmu.edu.tw>’

The Description field contains
  <https://htmlpreview.github.io/?https://github.com/herdiantrisufriyana/rcausim/blob/master/doc/causal_simulation_exemplar.html>.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Samuel D. Pimentel <spi@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "D."),
                    family = "Pimentel",
                    role = c("aut", "cre"),
                    email = "spi@berkeley.edu")
as necessary.
Maintainer: ‘Samuel D. Pimentel <spi@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "D."),
                    family = "Pimentel",
                    role = c("aut", "cre"),
                    email = "spi@berkeley.edu")
as necessary.
Maintainer: ‘Dr. Fayed Alshammri <fayed333@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fayed",
                      family = "Alshammri",
                      role = "aut"),
               person(given = c("Dr.", "Fayed"),
                      family = "Alshammri",
                      role = "cre",
                      email = "fayed333@hotmail.com"))
as necessary.
Maintainer: ‘Jean Morrison <jeanm@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jean",
                    family = "Morrison",
                    role = c("aut", "cre"),
                    email = "jeanm@uchicago.edu")
as necessary.

The Description field contains
  <arXiv:1702.06986>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘temp.RData’
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "geyer@umn.edu"),
               person(given = c("Glen", "D."),
                      family = "Meeden",
                      role = "aut",
                      email = "gmeeden@umn.edu"),
               person(given = c("incorporates", "code", "from", "cddlib", "written", "by", "Komei"),
                      family = "Fukuda",
                      role = "aut",
                      email = "fukuda@ifor.math.ethz.ch",
                      comment = c(ROR = "ver 0.94f")))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get.fingerprint.Rd: fingerprint-class, featvec-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alberto Krone-Martins <algol@sim.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Krone-Martins",
                    role = c("aut", "cre"),
                    email = "algol@sim.ul.pt")
as necessary.
Maintainer: ‘Bruno Melo <ctbrunomelo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Bruno", "M.", "S.", "S."),
                      family = "Melo",
                      role = "aut"),
               person(given = "Bruno",
                      family = "Melo",
                      role = "cre",
                      email = "ctbrunomelo@gmail.com"))
as necessary.
checkRd: (-1) nc_open_CGLS.Rd:29-32: Lost braces
    29 | if(resolution == "300m"){
       |                         ^
checkRd: (-1) nc_open_CGLS.Rd:33-36: Lost braces
    33 | if(resolution == "1km"){
       |                        ^
checkRd: (-1) Rchoice.Rd:159: Lost braces; missing escapes or markup?
   159 |  \code{ranp}. If the parameters are assumed to be normally distributed \eqn{\beta_i ~ N(\beta, \Sigma)}, then the random parameter are constructed as: \deqn{\beta_{ir}=\beta+L\omega_{ir}} where \eqn{LL'=\Sigma} and \eqn{\omega_{ir}} is the {r}-th draw from standard normal distribution for individual \eqn{i}. 
       |                                                                                                                                                                                                                                                 ^
Maintainer: ‘Anne Philippe <anne.philippe@univ-nantes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne",
                      family = "Philippe",
                      role = c("aut", "cre"),
                      email = "anne.philippe@univ-nantes.fr"),
               person(given = "Marie-Anne",
                      family = "Vibet",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘data.csv’
Maintainer: ‘Hongen Zhang <hzhang.henry@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hongen",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzhang.henry@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sebastien Bihorel <sb.pmlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastien",
                    family = "Bihorel",
                    role = c("aut", "cre"),
                    email = "sb.pmlab@gmail.com")
as necessary.
Maintainer: ‘Wolfgang Konen <wolfgang.konen@fh-koeln.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Konen",
                      role = c("aut", "cre"),
                      email = "wolfgang.konen@fh-koeln.de"),
               person(given = "Nikolaus",
                      family = "Hansen",
                      role = "aut",
                      email = "hansen.AT.lri.fr"))
as necessary.
Found the following files/directories:
  ‘outcmaesdisp.dat’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  RcmdrPlugin.cpd.Rd: cpd, Rcmdr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Aurora Torrente <etorrent@est-econ.uc3m.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sara",
                      family = "Lopez-Pintado",
                      role = "aut",
                      email = "sl2929@columbia.edu"),
               person(given = "Aurora",
                      family = "Torrente.",
                      role = "aut",
                      email = "etorrent@est-econ.uc3m.es"),
               person(given = "Aurora",
                      family = "Torrente",
                      role = "cre",
                      email = "etorrent@est-econ.uc3m.es"))
as necessary.
Maintainer: ‘David Leiva <dleivaur@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maribel",
                      family = "Pero",
                      role = "aut",
                      email = "mpero@ub.edu"),
               person(given = "David",
                      family = "Leiva",
                      role = c("aut", "cre"),
                      email = "dleivaur@ub.edu"),
               person(given = "Joan",
                      family = "Guardia",
                      role = "aut",
                      email = "jguardia@ub.edu"),
               person(given = "Antonio",
                      family = "Solanas",
                      role = "aut",
                      email = "antonio.solanas@ub.edu"))
as necessary.
Maintainer: ‘Daniel-Corneliu Leucuta <danny.ldc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel-Corneliu",
                    family = "Leucuta",
                    role = c("aut", "cre"),
                    email = "danny.ldc@gmail.com")
as necessary.
Maintainer: ‘Liviu Andronic <landronimirc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liviu",
                    family = "Andronic",
                    role = c("aut", "cre"),
                    email = "landronimirc@gmail.com")
as necessary.
Maintainer: ‘Yoshinobu Kanda <ycanda-tky@umin.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yoshinobu",
                    family = "Kanda",
                    role = c("aut", "cre"),
                    email = "ycanda-tky@umin.ac.jp")
as necessary.
Maintainer: ‘Francois Husson <francois.husson@institut-agro.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Husson",
                      role = c("aut", "cre"),
                      email = "francois.husson@institut-agro.fr"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Sebastien",
                      family = "Le",
                      role = "aut"))
as necessary.
Maintainer: ‘Richard M. Heiberger <rmh@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Richard", "M."),
                      family = "Heiberger",
                      role = c("aut", "cre"),
                      email = "rmh@temple.edu"),
               person(given = c("with", "contributions", "from", "Burt"),
                      family = "Holland",
                      role = "aut"))
as necessary.
Maintainer: ‘A. C. Del Re <acdelre@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("A.", "C.", "Del"),
                    family = "Re",
                    role = c("aut", "cre"),
                    email = "acdelre@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) RcmdrPlugin.MA-package.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) RcmdrPlugin.MA-package.Rd:23: Escaped LaTeX specials: \&
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrew",
                      family = "Heiss",
                      role = c("aut", "cre"),
                      email = "andrew@andrewheiss.com"),
               person(given = "Richard",
                      family = "Payne",
                      role = "aut"),
               person(given = "Christa",
                      family = "Schank",
                      role = "aut"),
               person(given = "Jessica",
                      family = "Reese",
                      role = "aut"))
as necessary.
Maintainer: ‘Manuel Munoz-Marquez <manuel.munoz@uca.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manuel",
                    family = "Munoz-Marquez",
                    role = c("aut", "cre"),
                    email = "manuel.munoz@uca.es")
as necessary.
Maintainer: ‘Achmad Fauzi Bagus F <fauzi.pandya@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Monalisa", "Sipahutar,Setia"),
                      family = "Pramana",
                      role = "aut",
                      email = "11.6790@stis.ac.id"),
               person(given = "Achmad",
                      family = "Fauzi",
                      role = c("aut", "cre"),
                      email = "fauzi.pandya@gmail.com"))
as necessary.
Maintainer: ‘Arto Luoma <arto.luoma@wippies.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arto",
                    family = "Luoma",
                    role = c("aut", "cre"),
                    email = "arto.luoma@wippies.com")
as necessary.
Maintainer: ‘Marcelo Goulart Correia <mgoulart.inc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marcelo", "Goulart"),
                    family = "Correia",
                    role = c("aut", "cre"),
                    email = "mgoulart.inc@gmail.com")
as necessary.
Maintainer: ‘Liviu Andronic <landronimirc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liviu",
                    family = "Andronic",
                    role = c("aut", "cre"),
                    email = "landronimirc@gmail.com")
as necessary.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Fox",
                    role = c("aut", "cre"),
                    email = "jfox@mcmaster.ca")
as necessary.
Maintainer: ‘John Fox <jfox@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Fox",
                    role = c("aut", "cre"),
                    email = "jfox@mcmaster.ca")
as necessary.
checkRd: (-1) nonlinearAR1.sim.Rd:8: Lost braces; missing escapes or markup?
     8 | of the form z_n = g(z_{n-1}) + epsilon. A normal distribution is assumed for the innovations.
       |                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Maintainer: ‘Erich Neuwirth <erich.neuwirth@univie.ac.at>’

The Description field contains
  Cynthia Brewer as described at http://colorbrewer2.org.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Joseph Wood <jwood000@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://github.com/jwood000/RcppAlgos/issues/9#issue-467908452Issue%20#9
    From: NEWS.md
    Message: Invalid URL: '#' not allowed in fragment
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RcppCensSpatial.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Romain",
                      family = "Francois",
                      role = "aut"),
               person(given = c("based", "on", "code", "written", "during"),
                      family = "2005",
                      role = "aut"),
               person(given = c("2006", "by", "Dominick"),
                      family = "Samperi",
                      role = "aut"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Romain",
                      family = "Francois",
                      role = "aut"),
               person(given = c("with", "contributions", "by", "David"),
                      family = "Reiss",
                      role = "aut"),
               person(given = c("and", "based", "on", "code", "written", "during"),
                      family = "2005",
                      role = "aut"),
               person(given = c("2006", "by", "Dominick"),
                      family = "Samperi",
                      role = "aut"))
as necessary.
Maintainer: ‘Zach DeBruine <zacharydebruine@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zach",
                    family = "DeBruine",
                    role = c("aut", "cre"),
                    email = "zacharydebruine@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
'library' or 'require' call not declared from: ‘rbenchmark’
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Romain",
                      family = "Francois",
                      role = "aut"))
as necessary.
Maintainer: ‘Shusei Eshima <shuseieshima@gmail.com>’

The Description field contains
  (2023) <arXiv:2305.19045>. Jagger uses patterns derived from
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Maintainer: ‘Karl Forner <karl.forner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karl",
                    family = "Forner",
                    role = c("aut", "cre"),
                    email = "karl.forner@gmail.com")
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dirk", "Eddelbuettel;", "the"),
                      family = "authors",
                      role = "aut"),
               person(given = c("contributors", "of"),
                      family = "QuantLib",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = "cre",
                      email = "edd@debian.org"))
as necessary.
Maintainer: ‘Kevin Ushey <kevinushey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Ushey",
                    role = c("aut", "cre"),
                    email = "kevinushey@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘print.rcpptimer.R’
Maintainer: ‘Jonathan Olmsted <jpolmsted@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rtn.Rd’:
    http://dx.doi.org/10.1007/BF00143942
Maintainer: ‘Marc A. Suchard <msuchard@ucla.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: please drop specification unless essential
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Jamie Spaulding <jspaulding02@hamline.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jamie",
                      family = "Spaulding",
                      role = c("aut", "cre"),
                      email = "jspaulding02@hamline.edu"),
               person(given = "Keith",
                      family = "Morris",
                      role = "aut"))
as necessary.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Burkhardt",
                    role = c("aut", "cre"),
                    email = "johannes.burkhardt@gmail.com")
as necessary.
Maintainer: ‘J.S. Pierre <jean-sebastien.pierre@univ-rennes1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Sebastien",
                      family = "PIERRE",
                      role = c("aut", "cre")),
               person(given = "J.S.",
                      family = "Pierre",
                      role = "cre",
                      email = "jean-sebastien.pierre@univ-rennes1.fr"))
as necessary.
Maintainer: ‘Colin Millar <colin.millar@ices.dk>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rct3-package.Rd’:
    https://doi.org/10.1006/jmsc.1997.0222
  File ‘rct3.Rd’:
    https://doi.org/10.1006/jmsc.1997.0222
Maintainer: ‘Isidoro Garcia-Urquieta <isidoro.gu@gmail.com>’

The Description field contains
  <arXiv:1607.00698>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wojciech Rosa <w.rosa@pollub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wojciech",
                    family = "Rosa",
                    role = c("aut", "cre"),
                    email = "w.rosa@pollub.pl")
as necessary.
Maintainer: ‘Chi Seng Pun <cspun@ntu.edu.sg>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chi", "Seng"),
                      family = "Pun",
                      role = c("aut", "cre"),
                      email = "cspun@ntu.edu.sg"),
               person(given = c("Matthew", "Zakharia"),
                      family = "Hadimaja",
                      role = "aut"))
as necessary.
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.

The Description field contains
  A client library for 'The Guardian' (https://www.guardian.com/) and
Please enclose URLs in angle brackets (<...>).

The BugReports field in DESCRIPTION has
  https://github.com/ironholds/rdian
which should likely be
  https://github.com/ironholds/rdian/issues
instead.
Maintainer: ‘Gennaro Tedesco: <gennarotedesco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gennaro",
                    family = "Tedesco",
                    role = c("aut", "cre"),
                    email = "gennarotedesco@gmail.com")
as necessary.
Maintainer: ‘Christopher Bolen <cbolen1@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) farthest_point_sampling.Rd:28: Lost braces; missing escapes or markup?
    28 | space P = {p_1, ..., p_k}, such that each p_i is the farthest 
       |           ^
Maintainer: ‘Richard Reeve <richard.reeve@glasgow.ac.uk>’

The Description field contains
  <arXiv:1404.6520v3>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Christopher Strothmann <rdmpackage@gmail.com>’

The Description field contains
  presented in Strothmann et al. (2022) <arXiv:2201.03329> and Strothmann
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) computeCBMeasure.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) computeCBMeasure.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rdm.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Christian Graul <christian.graul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Graul",
                    role = c("aut", "cre"),
                    email = "christian.graul@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hasan BULUT <hasan.bulut@omu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hasan",
                    family = "BULUT",
                    role = c("aut", "cre"),
                    email = "hasan.bulut@omu.edu.tr")
as necessary.
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhirui",
                      family = "Hu",
                      role = "aut"),
               person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"))
as necessary.

The Description field contains
  Also see Hu and Tak (2020) <arXiv:2005.08049>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helpers-process-tracing.R’ ‘process_tracing_estimator.Rd’
Maintainer: ‘Aaron J. Baraff <ajbaraff@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aaron", "J."),
                    family = "Baraff",
                    role = c("aut", "cre"),
                    email = "ajbaraff@uw.edu")
as necessary.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"),
               person(given = "Kisung",
                      family = "You",
                      role = "aut"),
               person(given = c("Sujit", "K."),
                      family = "Ghosh",
                      role = "aut"),
               person(given = "Bingyue",
                      family = "Su",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Suh",
                      role = "aut"),
               person(given = "Peter",
                      family = "Hoff",
                      role = c("aut", "cre"),
                      email = "peter.hoff@duke.edu"))
as necessary.
Maintainer: ‘Subhadip Datta <subhadipdatta007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhadip",
                    family = "Datta",
                    role = c("aut", "cre"),
                    email = "subhadipdatta007@gmail.com")
as necessary.
Maintainer: ‘Nicholas Cooper <njcooper@gmx.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Cooper",
                    role = c("aut", "cre"),
                    email = "njcooper@gmx.co.uk")
as necessary.
checkRd: (-1) reader-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) reader-package.Rd:55: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘temp.txt’ ‘temp2.csv’ ‘temp3.rda’
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kasper",
                    family = "Kristensen",
                    role = c("aut", "cre"),
                    email = "kaskr@dtu.dk")
as necessary.
Maintainer: ‘Clemens Druee <druee@uni-trier.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Clemens",
                      family = "Druee",
                      role = c("aut", "cre"),
                      email = "druee@uni-trier.de"),
               person(given = "Universitaet",
                      family = "Trier",
                      role = "aut"))
as necessary.
Maintainer: ‘Petr Savicky <savicky@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Savicky",
                    role = c("aut", "cre"),
                    email = "savicky@cs.cas.cz")
as necessary.
checkRd: (-1) readMzXmlDir.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readMzXmlDir.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readMzXmlDir.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readMzXmlFile.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readMzXmlFile.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readMzXmlFile.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Mark Ewing <b.mark@ewingsonline.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Ewing",
                    role = c("aut", "cre"),
                    email = "b.mark@ewingsonline.com")
as necessary.
checkRd: (-1) ReAD.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{pi}{An estimate of the stationary probabilities of four states {(0,0), (0,1), (1,0), (1,1)}.}
       |                                                                      ^
checkRd: (-1) em_hmm.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{pi}{An estimate of the stationary probabilities of four states {(0,0), (0,1), (1,0), (1,1)}.}
       |                                                                      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  melt_delim.Rd: tibble
  read_delim.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘readr/libs/readr.so’:
  Found non-API calls to R: ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
    ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Ivan Fernandez-Val <ivanf@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wesley",
                      family = "Graybill",
                      role = "aut"),
               person(given = "Mingli",
                      family = "Chen",
                      role = "aut"),
               person(given = "Victor",
                      family = "Chernozhukov",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Fernandez-Val",
                      role = c("aut", "cre"),
                      email = "ivanf@bu.edu"),
               person(given = "Alfred",
                      family = "Galichon",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas Wieland <thomas.wieland.geo@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wieland",
                    role = c("aut", "cre"),
                    email = "thomas.wieland.geo@googlemail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Automotive.Rd:29: Lost braces
    29 | Wikipedia (2018): \dQuote{Automobilindustrie --- Wikipedia{,} Die freie Enzyklopaedie}. \url{https://de.wikipedia.org/wiki/Automobilindustrie} (accessed October 14, 2018). Own postprocessing.
       |                                                           ^
checkRd: (-1) Automotive.Rd:33: Lost braces
    33 | Wikipedia (2018): \dQuote{Automobilindustrie --- Wikipedia{,} Die freie Enzyklopaedie}. \url{https://de.wikipedia.org/wiki/Automobilindustrie} (accessed October 14, 2018). 
       |                                                           ^
'library' or 'require' call not declared from: ‘deconvolveR’
'library' or 'require' calls not declared from:
  ‘FNN’ ‘MASS’ ‘e1071’ ‘flexmix’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DateTime.Rd: ClassGroups
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gg_CD_local.R’ ‘gg_PIT_local.R’
Maintainer: ‘Louis Raimbault <Louis.Raimbault@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Louis",
                      family = "Raimbault",
                      role = c("aut", "cre"),
                      email = "louis.raimbault@icloud.com"),
               person(family = "A.Mokkadem",
                      role = "aut"),
               person(family = "M.Pelletier",
                      role = "aut"))
as necessary.

The Description field contains
  Raimbault (2020) <arXiv:2011.14195>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/LouisRaimbault/RecAssoRules-R
which should likely be
  https://github.com/LouisRaimbault/RecAssoRules-R/issues
instead.
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.
Maintainer: ‘Leonardo Dapporto <leondap@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leonardo",
                      family = "Dapporto",
                      role = c("aut", "cre"),
                      email = "leondap@gmail.com"),
               person(given = "Matteo",
                      family = "Ramazzotti",
                      role = "aut"),
               person(given = "Simone",
                      family = "Fattorini",
                      role = "aut"),
               person(given = "Roger",
                      family = "Vila",
                      role = "aut"),
               person(given = "Gerard",
                      family = "Talavera",
                      role = "aut"),
               person(given = c("Roger", "H.L."),
                      family = "Dennis",
                      role = "aut"))
as necessary.
checkRd: (-1) recombinator.Rd:32-34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) recombinator.Rd:35-38: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@smu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Hahsler",
                    role = c("aut", "cre"),
                    email = "mhahsler@smu.edu")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@smu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Hahsler",
                    role = c("aut", "cre"),
                    email = "mhahsler@smu.edu")
as necessary.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Os",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Maintainer: ‘Magdalena Chrapek <Magdalena.Chrapek@ujk.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Magdalena",
                    family = "Chrapek",
                    role = c("aut", "cre"),
                    email = "magdalena.chrapek@ujk.edu.pl")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = "David",
                      family = "Cortes",
                      role = "aut"),
               person(given = "Chih-Jen",
                      family = "Lin",
                      role = "aut"),
               person(given = "Yu-Chin",
                      family = "Juan",
                      role = "aut"),
               person(given = "Wei-Sheng",
                      family = "Chin",
                      role = "aut"),
               person(given = "Yong",
                      family = "Zhuang",
                      role = "aut"),
               person(given = "Bo-Wen",
                      family = "Yuan",
                      role = "aut"),
               person(given = "Meng-Yuan",
                      family = "Yang",
                      role = "aut"),
               person(given = c("other", "contributors.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
checkRd: (-1) pseudo.geefit.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.geefit.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.onedim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.threedim.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pseudo.twodim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘redSolve.R’
Maintainer: ‘Ivan Rivera <ivan.s.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ivan",
                    family = "Rivera",
                    role = c("aut", "cre"),
                    email = "ivan.s.rivera@gmail.com")
as necessary.
Maintainer: ‘Siddhartha Kundu <siddhartha_kundu@aiims.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Siddhartha",
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "2021:ManuscriptUnderPreparation")
as necessary.
Maintainer: ‘Juan A. Ferrer-Bonsoms <jafhernandez@tecnun.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "A."),
                      family = "Ferrer-Bonsoms",
                      role = c("aut", "cre"),
                      email = "jafhernandez@tecnun.es"),
               person(given = "Laura",
                      family = "Jareno",
                      role = "aut"),
               person(given = "Angel",
                      family = "Rubio",
                      role = "aut"))
as necessary.
File ‘redland/libs/redland.so’:
  Found non-API call to R: ‘SET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Maintainer: ‘Daniel Finnegan <dan.finnegan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Finnegan",
                    role = c("aut", "cre"),
                    email = "dan.finnegan@gmail.com")
as necessary.
Maintainer: ‘Christopher Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
checkRd: (-1) make_refreshable.Rd:13: Lost braces
    13 | not that quotes need to be escaped (code{\"}).}
       |                                         ^
Maintainer: ‘"David Hugh-Jones" <davidhughjones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "\"David",
                    family = "Hugh-Jones\"",
                    role = c("aut", "cre"),
                    email = "davidhughjones@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_shiny.Rd: fpca.sc, fpca.face, fpca.ssvd, fpca2s, bayes_fosr,
    mfpca.sc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘William Belzak <wbelzak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "William",
                    family = "Belzak",
                    role = c("aut", "cre"),
                    email = "wbelzak@gmail.com")
as necessary.
Maintainer: ‘Daniel Crouch <djmcrouch@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "J.M."),
                      family = "Crouch",
                      role = "aut"),
               person(given = c("Graham", "H.M.", "Goddard", "&", "Cathryn", "M."),
                      family = "Lewis",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Crouch",
                      role = "cre",
                      email = "djmcrouch@gmail.com"))
as necessary.
Found the following files/directories:
  ‘EnvironmentalA.txt’ ‘EnvironmentalB.txt’ ‘Example.txt’
  ‘Example_Predictions.txt’ ‘Example_RRDist.txt’
  ‘Example_RRDistCol.TIF’ ‘Example_RRDistGrey.TIF’ ‘GeneticA.txt’
  ‘GeneticB.txt’ ‘Inds.txt’
Maintainer: ‘Billy Buchanan <Billy.Buchanan@fayette.kyschools.us>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Billy",
                    family = "Buchanan",
                    role = c("aut", "cre"),
                    email = "billy.buchanan@fayette.kyschools.us")
as necessary.
Maintainer: ‘Daniel Antal <daniel.antal@ceemid.eu>’

The BugReports field in DESCRIPTION has
  https://github.com/rOpenGov/regions
which should likely be
  https://github.com/rOpenGov/regions/issues
instead.
checkRd: (-1) impute_down_nuts.Rd:21: Lost braces
    21 | NUTS typologies, defaults to code{"geo_var".}}
       |                                  ^
checkRd: (-1) validate_data_frame.Rd:19: Lost braces
    19 | NUTS typologies, defaults to code{"geo_var".}}
       |                                  ^
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/registr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gfpca_twoStep.Rd: gamm4
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘David Meyer <David.Meyer@R-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "david.meyer@r-project.org")
as necessary.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
checkRd: (-1) fbase1.binomial.Rd:32: Lost braces; missing escapes or markup?
    32 | In all base log-likelihood functions, we have dropped any additive terms that are independent of the distribution parameter, e.g. constant terms or those terms that are dependent on the response variable only. This is done for computational efficiency. Therefore, these functions cannot be used to obtain the absolute values of log-likelihood functions but only in the context of optimization and/or sampling. Users can write thin wrappers around these functions to add the constant terms to the function value. (Derivatives do not need correction. For binomial family, all factorial terms are ignored since they only depend on \code{n} and {y}.)
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ^
Maintainer: ‘Pawel Teisseyre <teisseyrep@ipipan.waw.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pawel",
                      family = "Teisseyre",
                      role = c("aut", "cre"),
                      email = "teisseyrep@ipipan.waw.pl"),
               person(given = c("Robert", "A."),
                      family = "Klopotek",
                      role = "aut"))
as necessary.
Maintainer: ‘Yanming Di<diy@stat.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yanming",
                    family = "Di",
                    role = c("aut", "cre"),
                    email = "diy@stat.oregonstate.edu")
as necessary.
Maintainer: ‘Mathieu Gautier <mathieu.gautier@supagro.inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mathieu",
                      family = "Gautier",
                      role = c("aut", "cre"),
                      email = "mathieu.gautier@supagro.inra.fr"),
               person(given = "Alexander",
                      family = "Klassmann",
                      role = "aut"),
               person(given = "Renaud",
                      family = "Vitalis",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) plot.ehh.Rd:27: Lost braces
    27 | \item{type}{plot type (see code{\link[graphics]{plot.default}} and \code{\link[graphics]{matplot}}). 
       |                                ^
checkRd: (-1) plot.ehhs.Rd:27: Lost braces
    27 | \item{type}{plot type (see code{\link[graphics]{plot.default}}.
       |                                ^
File ‘rehh/libs/rehh.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Calli Gross <calli@calligross.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Calli",
                    family = "Gross",
                    role = c("aut", "cre"),
                    email = "calli@calligross.de")
as necessary.
Maintainer: ‘Arnaud Buzzi <arnaud.buzzi@sia-partners.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arnaud",
                    family = "Buzzi",
                    role = c("aut", "cre"),
                    email = "arnaud.buzzi@sia-partners.com")
as necessary.
Maintainer: ‘Fabien Laporte <fabien.laporte@inra.fr>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "Fabien",
                      family = "Laporte",
                      role = c("aut", "cre"),
                      email = "fabien.laporte@inra.fr"),
               person(given = "Tristan",
                      family = "Mary-Huard",
                      role = "aut"))
as necessary.
Maintainer: ‘Mark S. Handcock <handcock@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = c("Mark", "S."),
                    family = "Handcock",
                    role = c("aut", "cre"),
                    email = "handcock@stat.ucla.edu")
as necessary.
Maintainer: ‘Miguel Rodríguez Asensio <miguel.rodriguezasensio@gmail.com>’

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  Authors@R: person(given = c("Miguel", "Rodríguez"),
                    family = "Asensio",
                    role = c("aut", "cre"),
                    email = "miguel.rodriguezasensio@gmail.com")
as necessary.
checkRd: (-1) polarizacion_Dalton.Rd:26: Lost braces; missing escapes or markup?
    26 | {Pd = sqrt(sum(p_j*(x_j-mean(x_p))/4.5)^2)}
       | ^
checkRd: (-1) reparto_div.Rd:37: Lost braces; missing escapes or markup?
    37 | The set of divisors is formed by the odd numbers, that is {1,3,..,2n+1}.
       |                                                           ^
Maintainer: ‘Werner A. Stahel <stahel@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Werner", "A."),
                    family = "Stahel",
                    role = c("aut", "cre"),
                    email = "stahel@stat.math.ethz.ch")
as necessary.
Maintainer: ‘Carter T. Butts <buttsc@uci.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = c("Carter", "T."),
                    family = "Butts",
                    role = c("aut", "cre"),
                    email = "buttsc@uci.edu")
as necessary.
checkRd: (-1) rem.dyad.Rd:121: Lost braces; missing escapes or markup?
   121 | \item Single or multiple covariates, time varying: For \code{CovSnd}, \code{CovRec}, or \code{CovInt}, an \code{m} by \code{p} by {n} array whose respective dimensions index time (i.e., event number), covariate, and actor.  For \code{CovEvent}, a \code{m} by \code{p} by \code{n} by \code{n} array, whose dimensions are analogous to the previous case.
       |                                                                                                                                   ^
Maintainer: ‘Kenneth Tay <kjytay@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kenneth",
                      family = "Tay",
                      role = c("aut", "cre"),
                      email = "kjytay@stanford.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.

The Description field contains
  (2019) <arXiv:1912.01808> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alexander I. Jordan <alexander.jordan@h-its.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michael Hernandez <michael@hernandez.ai>’

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  Authors@R: c(person(given = "Michael",
                      family = "Hernandez",
                      role = c("aut", "cre"),
                      email = "micahel@hernandez.ai"),
               person(given = "Yuri",
                      family = "Balasanov",
                      role = "aut"))
as necessary.
Maintainer: ‘David Firth <d.firth@warwick.ac.uk>’

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  Authors@R: c(person(given = c("David", "Firth", "with", "contributions", "from", "Heather"),
                      family = "Turner",
                      role = "aut"),
               person(given = "John",
                      family = "Fox",
                      role = "aut"),
               person(given = "David",
                      family = "Firth",
                      role = "cre",
                      email = "d.firth@warwick.ac.uk"))
as necessary.
Maintainer: ‘James M. Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("James", "M."),
                    family = "Curran",
                    role = c("aut", "cre"),
                    email = "j.curran@auckland.ac.nz")
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

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  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Tony Wang <xwang@imedacs.com>’

The Description field contains
  <arXiv:2203.02771>. Methods for missing-not-at-random include
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Laurence Brandenberger <lbrandenberger@ethz.ch>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Laurence",
                    family = "Brandenberger",
                    role = c("aut", "cre"),
                    email = "lbrandenberger@ethz.ch")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Miguel F. Acevedo <acevedo@unt.edu>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = c("Miguel", "F."),
                    family = "Acevedo",
                    role = c("aut", "cre"),
                    email = "acevedo@unt.edu")
as necessary.
Maintainer: ‘Minji Lee <minjilee101@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minji",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "minjilee101@gmail.com"),
               person(given = "Zhihua",
                      family = "Su",
                      role = "aut"))
as necessary.
Maintainer: ‘Jordan Hayes <jhayes@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jordan",
                    family = "Hayes",
                    role = c("aut", "cre"),
                    email = "jhayes@ucr.edu")
as necessary.
Maintainer: ‘Juan Carlos Aledo <caledo@uma.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Juan", "Carlos"),
                    family = "Aledo",
                    role = c("aut", "cre"),
                    email = "caledo@uma.es")
as necessary.
Maintainer: ‘Gourav Kumar Vani <kumaragri.vani1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gourav", "Kumar"),
                      family = "Vani",
                      role = c("aut", "cre"),
                      email = "kumaragri.vani1@gmail.com"),
               person(given = c("Dr.", "Vivek"),
                      family = "Badhe",
                      role = "aut",
                      email = "vivekbadhe.jbp@gmail.com"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) twosidedPValuestobins.Rd:84: Lost braces; missing escapes or markup?
    84 | A matrix with \code{n.bins + 1} rows and {ncol(zmat)} columns, representing for each study the discretization chosed. Values are the between bin breaks. First and last values are the edges of the outmost bins.
       |                                          ^
checkRd: (-1) ztobins.Rd:90: Lost braces; missing escapes or markup?
    90 | A matrix with \code{n.bins + 1} rows and {ncol(zmat)} columns, representing for each study the discretization chosed. Values are the between bin breaks. First and last values are the edges of the outmost bins.
       |                                          ^
checkRd: (-1) method.A.Rd:200-205: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:206-211: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:231-236: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:237-242: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:201-206: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:207-212: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:232-237: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:238-243: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = c("Tyler", "J."),
                      family = "VanderWeele",
                      role = "aut"))
as necessary.
Maintainer: ‘Dzmitry G Batrakou <d.batrakou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dzmitry", "G"),
                    family = "Batrakou",
                    role = c("aut", "cre"),
                    email = "d.batrakou@gmail.com")
as necessary.
Maintainer: ‘David Hervas Marin <ddhervas@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "Hervas"),
                    family = "Marin",
                    role = c("aut", "cre"),
                    email = "ddhervas@yahoo.es")
as necessary.
Maintainer: ‘Nick Parsons <nick.parsons@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Parsons",
                    role = c("aut", "cre"),
                    email = "nick.parsons@warwick.ac.uk")
as necessary.
Maintainer: ‘Francesco Napolitano <franapoli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francesco",
                    family = "Napolitano",
                    role = c("aut", "cre"),
                    email = "franapoli@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) repo_build.Rd:44-47: Lost braces
    44 | ## chunk "item 1" {
       |                   ^
checkRd: (-1) repo_dependencies.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) repo_dependencies.Rd:49-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) repo_dependencies.Rd:51-53: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Fischer <daniel.fischer@luke.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Fischer",
                      role = c("aut", "cre"),
                      email = "daniel.fischer@luke.fi"),
               person(given = "Alain",
                      family = "Berro",
                      role = "aut"),
               person(given = "Klaus",
                      family = "Nordhausen",
                      role = "aut"),
               person(given = "Anne",
                      family = "Ruiz-Gazen",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘estimate_impact.R’ ‘plot_repsd.R’ ‘repsd_pval.R’
Maintainer: ‘Yupeng He <yupeng.he.bioinfo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yupeng",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "yupeng.he.bioinfo@gmail.com")
as necessary.
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Require2.R’ ‘helpers.R’ ‘pak.R’ ‘pkgDep3.R’
Running examples in ‘rerddapXtracto-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rxtracto
> ### Title: Extract environmental data along a trajectory from an 'ERDDAP™'
> ###   server using 'rerddap'.
> ### Aliases: rxtracto
> 
> ### ** Examples
> 
> ## toy example to show use
> ## but keep execution time down
> ##
> # dataInfo <- rerddap::info('erdHadISST')
> ##
> parameter <- 'sst'
> xcoord <- c(-130.5)
> ycoord <- c(40.5)
> tcoord <- c('2006-01-16')
> # extract <- rxtracto(dataInfo, parameter = parameter, xcoord = xcoord,
> #                   ycoord = ycoord, tcoord= tcoord
> #                   )
> ##
> ## bathymetry example
> ## 2-D example getting bathymetry
> ## Wrap rerddap::info('etopo360') call in function that insures proper finish if it fails
> dataInfo <- safe_info('etopo360')
Curl request failed: Timeout was reached [upwell.pfeg.noaa.gov]:
Resolving timed out after 10000 milliseconds
checkRd: (-1) NCBirths2004.Rd:16: Lost braces
    16 |     \item{\code{Smoker}}{Mother a smoker? code{No}, \code{Yes}}
       |                                               ^
Maintainer: ‘Tim Hesterberg <timhesterberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Hesterberg",
                    role = c("aut", "cre"),
                    email = "timhesterberg@gmail.com")
as necessary.
checkRd: (-1) ExpandProbs.Rd:35: Lost braces; missing escapes or markup?
    35 |      {z_probs2 sqrt((n-1)/n) = t_probs,n-1}
       |      ^
Found the following significant warnings:
  diss_helpers.cpp:233:10: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  diss_helpers.cpp:280:10: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  regression_methods.cpp:163:47: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = double; T1 = arma::Glue<arma::Mat<double>, arma::eGlue<arma::subview_col<double>, arma::subview_col<double>, arma::eglue_minus>, arma::glue_cor>; out_eT = double; typename arma::arma_not_cx<in_eT>::result = double]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  regression_methods.cpp:164:47: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = double; T1 = arma::Glue<arma::Mat<double>, arma::eGlue<arma::subview_col<double>, arma::subview_col<double>, arma::eglue_minus>, arma::glue_cor>; out_eT = double; typename arma::arma_not_cx<in_eT>::result = double]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/resemble.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Sean Turner <swd.turner@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) cast.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) cast.Rd:46: Escaped LaTeX specials: \_
File ‘reshape2/libs/reshape2.so’:
  Found non-API calls to R: ‘OBJECT’, ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Konstantin Hopf <konstantin.hopf@uni-bamberg.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘to_df.R’
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) resistance.Rd:52: Lost braces
    52 |     \item B. Bollob\'{a}s, 1998.  \emph{Modern Graph Theory}.  Springer.
       |                      ^
Maintainer: ‘Maeve Upton <uptonmaeve010@gmail.com>’

The Description field contains
  et al 2023) <arXiv:2301.09556>, spatio-temporal splines (Upton et al
  2023) <arXiv:2301.09556> and generalised additive models (Upton et al
  2023) <arXiv:2301.09556>.  This package facilitates data loading, model
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yannick Marcon <yannick.marcon@obiba.org>’

The BugReports field in DESCRIPTION has
  https://github.com/obiba/resourcer
which should likely be
  https://github.com/obiba/resourcer/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  format_time.Rd: lubridate
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ben Waxer <bwaxer@auriq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Waxer",
                    role = c("aut", "cre"),
                    email = "bwaxer@auriq.com")
as necessary.

The Description field contains
  http://www.auriq.com/documentation/source/install/index.html.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Maintainer: ‘Dmitry Selivanov <selivanov.dmitriy@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: https://app.gitter.im/#/room/#RestRserve_community:gitter.im
    From: README.md
    Message: Invalid URL: '#' not allowed in fragment
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_result.Rd’ ‘bind.R’ ‘bind.Rd’ ‘result.R’ ‘result.Rd’
Maintainer: ‘Miron B. Kursa <M.Kursa@icm.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miron", "B."),
                    family = "Kursa",
                    role = c("aut", "cre"),
                    email = "m.kursa@icm.edu.pl")
as necessary.
checkRd: (-1) harmonize_values.Rd:44: Lost braces; missing escapes or markup?
    44 | \item{perl}{Use perl-like regex? Defaults to {FALSE}.}
       |                                              ^
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Koohafkan",
                    role = c("aut", "cre"),
                    email = "michael.koohafkan@gmail.com")
as necessary.
Maintainer: ‘Julien Boelaert <jubo.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Boelaert",
                    role = c("aut", "cre"),
                    email = "jubo.stats@gmail.com")
as necessary.
checkRd: (-1) cpUpper.Rd:39: Lost braces
    39 | \code{"fastfloyd"}{ (default) uses an iterative variant of the Floyd-Warshall algorithm, in which the check of consistency of the current observation with a given cluster is done in a single step of the Floyd-Warshall algorithm. Much faster than \code{"floyd"}.}
       |                   ^
checkRd: (-1) cpUpper.Rd:41: Lost braces
    41 | \code{"floyd"}{ uses the algorithm described in Crawford and Pendakur (2013): at each step the complete Floyd-Warshall algorithm is run to check whether each cluster can accomodate the current observation.}
       |               ^
checkRd: (-1) rec.Rd:23: Escaped LaTeX specials: \$
checkRd: (-1) saveRev.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{use_wd}{logical - If TRUE, the history will be prepended by setwd({'users current working directory'}). This function will set the script's working directory to
       |                                                                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_an_exercise.Rd’ ‘define_exercises.Rd’
    ‘define_exercises_from_csv.Rd’ ‘define_exercises_from_excel.Rd’
'::' or ':::' import not declared from: ‘Matrix’
'library' or 'require' call not declared from: ‘Matrix’
Maintainer: ‘Pablo Barbera <pbarbera@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pablo",
                      family = "Barbera",
                      role = c("aut", "cre"),
                      email = "pbarbera@usc.edu"),
               person(given = "Michael",
                      family = "Piccirilli",
                      role = "aut",
                      email = "mrp2181@columbia.edu"),
               person(given = "Andrew",
                      family = "Geisler",
                      role = "aut"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  cts.cpp:28:45: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  cts.cpp:64:45: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  spat_med.cpp:32:30: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Rfast.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ankur",
                      family = "Chakravarthy",
                      role = c("aut", "cre"),
                      email = "ankur.chakravarthy.10@ucl.ac.uk"),
               person(family = "PhD",
                      role = "aut"))
as necessary.
Maintainer: ‘Shangzhi Hong <shangzhi-hong@hotmail.com>’

The Description field contains
  <arXiv:2004.14823>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Miron Bartosz Kursa <M.Kursa@icm.edu.pl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running examples in ‘rFIA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: areaChange
> ### Title: Estimate land area change from the FIADB
> ### Aliases: areaChange
> 
> ### ** Examples
> 
> ## Don't show: 
>   # Restrict threads for CRAN compliance
>   dt_threads <- data.table::getDTthreads()
>   data.table::setDTthreads(1)
> ## End(Don't show)
> # Load data from the rFIA package
> data(fiaRI)
> data(countiesRI)
> 
> # Most recents subset
> fiaRI_mr <- clipFIA(fiaRI)
> 
> # Most recent estimates of change in forested area in RI
> areaChange(db = fiaRI_mr)
Error in .checkTypos(e, names_x) : 
  Object 'keepThese' not found amongst [PLT_CN, CONDPROP_UNADJ, PROP_BASIS, COND_STATUS_CD, CONDID, aD, landD]
Calls: areaChange ... <Anonymous> -> .checkTypos -> stopf -> raise_condition -> signal
Execution halted
checkRd: (-1) fs_search.Rd:76: Lost braces
    76 | \\code{\link{fs_auth}} \code{\link{fs_browse}}
       |       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘common_names.R’ ‘distribution.R’ ‘fb_tbl.R’
Maintainer: ‘Karthik Ram <karthik.ram@gmail.com>’

The Description field contains
  of the 'rOpenSci' suite (http://ropensci.org).
Please enclose URLs in angle brackets (<...>).

The BugReports field in DESCRIPTION has
  http://www.github.com/ropensci/rfisheries/issues/new
which should likely be
  http://www.github.com/ropensci/rfisheries/issues/new/issues
instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘John Kloke <johndkloke@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Kloke",
                      role = c("aut", "cre"),
                      email = "johndkloke@gmail.com"),
               person(given = "Joseph",
                      family = "McKean",
                      role = "aut"))
as necessary.
Maintainer: ‘Matthias Kohl <Matthias.Kohl@stamats.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dimitri",
                      family = "Justeau-Allaire",
                      role = c("aut", "cre"),
                      email = "dimitri.justeau@gmail.com"),
               person(given = "Grégoire",
                      family = "Blanchard",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Ibanez",
                      role = "aut"),
               person(given = "Xavier",
                      family = "Lorca",
                      role = "aut"),
               person(given = "Ghislain",
                      family = "Vieilledent",
                      role = "aut"),
               person(given = "Philippe",
                      family = "Birnbaum",
                      role = "aut"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
'library' or 'require' calls not declared from:
  ‘rpanel’ ‘tkrplot’
Maintainer: ‘Markus Loecher <Markus.Loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Loecher",
                    role = c("aut", "cre"),
                    email = "Markus.Loecher@gmail.com")
as necessary.
Maintainer: ‘Joseph Kelly <josephkelly@post.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joseph",
                      family = "Kelly",
                      role = c("aut", "cre"),
                      email = "josephkelly@post.harvard.edu"),
               person(given = "Hyungsuk",
                      family = "Tak",
                      role = "aut"),
               person(given = "Carl",
                      family = "Morris",
                      role = "aut"))
as necessary.
Maintainer: ‘Cristian Quiroz-Moreno <cristianquirozd1997@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ee_install_set_pyenv.Rd: py_install
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
checkRd: (-1) GenDataPopulation.Rd:21: Lost braces
    21 | {data}{Population of data}
       |       ^
checkRd: (-1) GenDataSample.Rd:23: Lost braces
    23 | {data}{Sample of data}
       |       ^
Maintainer: ‘Felix Yanhui Fan <nolanfyh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Felix", "Yanhui"),
                    family = "Fan",
                    role = c("aut", "cre"),
                    email = "nolanfyh@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
Maintainer: ‘Lorenzo Rimella <lorenzo.rimella@hotmail.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenzo",
                    family = "Rimella",
                    role = c("aut", "cre"),
                    email = "lorenzo.rimella@hotmail.it")
as necessary.
Maintainer: ‘Aymeric Stamm <aymeric.stamm@math.cnrs.fr>’

The Description field contains
  Miolane et al. (2020) <arXiv:2004.04667>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘connection.R’ ‘level-set.R’ ‘lie-group.R’ ‘manifold.R’ ‘open-set.R’
    ‘spd-matrices.R’ ‘utils.R’
checkRd: (-1) RiemannianMetric.Rd:450-453: Lost braces
   450 | if (reticulate::py_module_available("geomstats")) {
       |                                                   ^
checkRd: (-1) RiemannianMetric.Rd:484-487: Lost braces
   484 | if (reticulate::py_module_available("geomstats")) {
       |                                                   ^
checkRd: (-1) RiemannianMetric.Rd:588-591: Lost braces
   588 | if (reticulate::py_module_available("geomstats")) {
       |                                                   ^
Maintainer: ‘Jose Miguel Cotes Torres <jmcotes@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jose", "Miguel", "Cotes", "Torres.", "Universidad", "Nacional", "de", "Colombia", "-", "Sede"),
                      family = "Medellin",
                      role = "aut"),
               person(given = c("Jose", "Miguel", "Cotes"),
                      family = "Torres",
                      role = "cre",
                      email = "jmcotes@unal.edu.co"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (JOSS reviewer), Jonathan Cardoso Silva [rev] (JOSS reviewer)’
  Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (what: JOSS reviewer), Jonathan Cardoso Silva [rev] (what: JOSS reviewer)’
checkRd: (-1) Ghana_2021_school_attendance.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Ghana_2021_school_attendance_geometry.Rd:75: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Virgilio Gómez-Rubio <virgilio.gomez@uclm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("María", "José"),
                      family = "Haro-Delicado",
                      role = "aut"),
               person(given = "Virgilio",
                      family = "Gómez-Rubio",
                      role = c("aut", "cre"),
                      email = "virgilio.gomez@uclm.es"),
               person(given = "Francisco",
                      family = "Parreńo-Torres",
                      role = "aut"))
as necessary.
Maintainer: ‘Danail Obreschkow <danail.obreschkow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Danail",
                    family = "Obreschkow",
                    role = c("aut", "cre"),
                    email = "danail.obreschkow@gmail.com")
as necessary.
Maintainer: ‘Francisco Richter <richtf@usi.ch>’

The Description field contains
  Environments." <arXiv:2304.01956>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jalpa Joshi Dave <jalpa@tatvic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jalpa", "Joshi"),
                    family = "Dave",
                    role = c("aut", "cre"),
                    email = "jalpa@tatvic.com")
as necessary.
Maintainer: ‘Marcin Szymanski <ms32035@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcin",
                    family = "Szymanski",
                    role = c("aut", "cre"),
                    email = "ms32035@gmail.com")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Michal Bojanowski [aut, cre] (<https://orcid.org/0000-0001-7503-852X>, Kozminski University), David Schoch [aut] (<https://orcid.org/0000-0003-2952-4812>)’
  Authors@R: ‘Michal Bojanowski [aut, cre] (ORCID: <https://orcid.org/0000-0001-7503-852X>, affil: Kozminski University), David Schoch [aut] (ORCID: <https://orcid.org/0000-0003-2952-4812>)’
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
checkRd: (-1) code_sawtooth_design.Rd:53: Lost braces
    53 | /url{http://www.sawtoothsoftware.com/help/lighthouse-studio/manual/index.html?hid_web_cbc_exporting.html}
       |     ^
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Maintainer: ‘Yichuan Bai <ycbai@iastate.edu>’

The Description field contains
  <arXiv:2307.12325>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adam Mantz <amantz@slac.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Mantz",
                    role = c("aut", "cre"),
                    email = "amantz@slac.stanford.edu")
as necessary.
checkRd: (-1) rhandsontable-package.Rd:8: Lost braces
     8 | R interface for creating tables using Handsontable, url{https://handsontable.com/}
       |                                                        ^
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gerry Tonkin-Hill <g.tonkinhill@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Victhor Sartório <victhor@dme.ufrj.br>’

The Description field contains
  See Neal (2017) <arXiv:1701.02434> for further details on Hamiltonian
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rezgar", "Arabzadeh;", "Shahab"),
                      family = "Araghinejad",
                      role = "aut"),
               person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = "cre",
                      email = "rezgararabzadeh@ut.ac.ir"))
as necessary.
Maintainer: ‘Shonosuke Sugasawa <shonosuke622@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shonosuke",
                    family = "Sugasawa",
                    role = c("aut", "cre"),
                    email = "shonosuke622@gmail.com")
as necessary.
Maintainer: ‘Christophe Dutang <christophe.dutang@ensimag.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christophe",
                      family = "Dutang",
                      role = c("aut", "cre"),
                      email = "christophe.dutang@ensimag.fr"),
               person(given = "Julie",
                      family = "Barthes",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following files/directories:
  ‘mydata.rda’ ‘thedata.rda’
checkRd: (-1) GenerateClusterData.Rd:34: Lost braces; missing escapes or markup?
    34 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2},
       |                                                ^
checkRd: (-1) GenerateClusterData.Rd:35: Lost braces; missing escapes or markup?
    35 | -v_{(numberOfClusters-1)/2} (if \code{numberOfClusters} is odd)
       |    ^
checkRd: (-1) GenerateClusterData.Rd:36: Lost braces; missing escapes or markup?
    36 | origin, v_1, -v_1, v_2, -v_2, v_3, -v_3,..., v_{(numberOfClusters-1)/2}
       |                                                ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:25-26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:27-28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:29-30: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:31-32: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:33-34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:35-36: Lost braces
    35 |    \item{pam_cluster_64_7_5715},{N=64, seven clusters with 5715 vectors per
       |                                 ^
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:37-38: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringDefaultMicrobenchmarks.Rd:39-40: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:21-22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) GetClusteringExampleMicrobenchmarks.Rd:23-24: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Ei-ji Nakama <nakama@ki.rim.or.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junji",
                      family = "NAKANO",
                      role = "aut",
                      email = "nakanoj@ism.ac.jp"),
               person(given = "Ei-ji",
                      family = "Nakama",
                      role = c("aut", "cre"),
                      email = "nakama@ki.rim.or.jp"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘RHRVEasy.R’ ‘easyStatsFunctions.R’
Maintainer: ‘Joseph Rigdon <jrigdon@wakehealth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Rigdon",
                    role = c("aut", "cre"),
                    email = "jrigdon@wakehealth.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  conduct_ri.Rd: declare_ra, obtain_permutation_matrix
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Xiang LI <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiang",
                      family = "LI",
                      role = c("aut", "cre"),
                      email = "ynaulx@gmail.com"),
               person(given = "Linna",
                      family = "MA",
                      role = "aut"))
as necessary.
Maintainer: ‘Xiang LI <ynaulx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiang",
                    family = "LI",
                    role = c("aut", "cre"),
                    email = "ynaulx@gmail.com")
as necessary.
Maintainer: ‘Steffen Moritz <steffen.moritz10@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Xinyuan Fan <fxy22@mails.tsinghua.edu.cn>’

The Description field contains
  and Wu (2024) <arXiv:2403.00600>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) iex.chart.Rd:23: Lost braces; missing escapes or markup?
    23 | r takes only of of the values accepted IN API request. {"5y", "2y", "1y", "ytd", "6m", "3m", "1m", "1d"}
       |                                                        ^
Maintainer: ‘Kean Ming Tan <ktan@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kean", "Ming"),
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "ktan@umn.edu")
as necessary.

The Description field contains
  Journal of the Royal Statistical Society: Series B. <arXiv:1604.08697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pavel", "V."),
                      family = "Moskalev",
                      role = c("aut", "cre"),
                      email = "moskalefff@gmail.com"),
               person(given = c("Alexey", "G."),
                      family = "Bukhovets",
                      role = "aut"),
               person(given = c("Tatyana", "Ya."),
                      family = "Biruchinskay",
                      role = "aut"))
as necessary.
Maintainer: ‘Joel Carlson <jnkcarlson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joel",
                    family = "Carlson",
                    role = c("aut", "cre"),
                    email = "jnkcarlson@gmail.com")
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
File ‘RInside/libs/RInside.so’:
  Found ‘srand’, possibly from ‘srand’ (C)
    Object: ‘RInside.o’
File ‘RInside/libs/RInside.so’:
  Found non-API calls to R: ‘R_CStackLimit’, ‘R_CleanTempDir’,
    ‘R_DefParams’, ‘R_ReplDLLinit’, ‘R_RunExitFinalizers’,
    ‘R_SetParams’, ‘R_SignalHandlers’, ‘R_TempDir’, ‘Rf_endEmbeddedR’,
    ‘Rf_initEmbeddedR’, ‘run_Rmainloop’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘population_utils.R’
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  parity portfolios. <arXiv:1311.4057>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) riskParityPortfolio.Rd:163: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:164: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:165: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:166: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:167: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:168: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:169: Lost braces in \itemize; meant \describe ?
checkRd: (-1) riskParityPortfolio.Rd:170: Lost braces in \itemize; meant \describe ?
Maintainer: ‘David Ardia <david.ardia.ch@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) riskPredict.Rd:38: Lost braces
    38 | {hat{eta}_c^{(1)}} based on the prediction rule.}
       | ^
checkRd: (-1) riskPredict.Rd:38: Lost braces
    38 | {hat{eta}_c^{(1)}} based on the prediction rule.}
       |     ^
checkRd: (-1) riskPredict.Rd:38: Lost braces; missing escapes or markup?
    38 | {hat{eta}_c^{(1)}} based on the prediction rule.}
       |             ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       | ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |     ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces; missing escapes or markup?
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |             ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |                      ^
checkRd: (-1) riskPredictDiff.Rd:34: Lost braces; missing escapes or markup?
    34 | {hat{eta}_c^{(1)}-hat{eta}_c^{(2)}} based on the 2 prediction rules.}
       |                              ^
Maintainer: ‘Saralees Nadarajah <mbbsssn2@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Saralees",
                      family = "Nadarajah",
                      role = c("aut", "cre"),
                      email = "mbbsssn2@manchester.ac.uk"),
               person(given = "Stephen",
                      family = "Chan",
                      role = "aut"))
as necessary.
Maintainer: ‘Paramita Saha-Chaudhuri <paramita.sahachaudhuri.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patrick", "J."),
                      family = "Heagerty",
                      role = "aut",
                      email = "heagerty@u.washington.edu"),
               person(given = c("packaging", "by", "Paramita"),
                      family = "Saha-Chaudhuri",
                      role = "aut",
                      email = "paramita.sahachaudhuri.work@gmail.com"),
               person(given = "Paramita",
                      family = "Saha-Chaudhuri",
                      role = "cre",
                      email = "paramita.sahachaudhuri.work@gmail.com"))
as necessary.
Maintainer: ‘Gregory Pasternack <gpast@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Pasternack",
                      role = c("aut", "cre"),
                      email = "gpast@ucdavis.edu"),
               person(given = "Rafaeli",
                      family = "Arroyo",
                      role = "aut",
                      email = "rtoarroyo@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plotdensity.R’
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Maintainer: ‘Aleksander Mendyk <mfmendyk@cyf-kr.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aleksander",
                      family = "Mendyk",
                      role = c("aut", "cre"),
                      email = "mfmendyk@cyf-kr.edu.pl"),
               person(given = c("with", "contributions", "from", "Sebastian"),
                      family = "Polak.",
                      role = "aut",
                      email = "mfpolak@@cyf-kr.edu.pl"))
as necessary.
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                             ^
checkRd: (-1) RivivcA.Rd:7: Lost braces
     7 | This is the major function to be called where numerical convolution ad/or deconvolution might be used for a linear in vitro in vivo correlation level A. It performes either numerical convolution via /code{NumConv()} or deconvolution via /code{NumDeconv()} and correlates their results with the known.data object via linear regression \code{lm()}. If you just want raw results of convolution/deconvolution then call explicitely \code{\link{NumConv}} or \code{link{NumDeconv}}
       |                                                                                                                                                                                                                                                   ^
Maintainer: ‘Gabriela Cohen-Freue <gcohen@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gabriela",
                      family = "Cohen-Freue",
                      role = c("aut", "cre"),
                      email = "gcohen@stat.ubc.ca"),
               person(given = "Davor",
                      family = "Cubranic",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "B."),
                      family = "Kaufmann",
                      role = "aut"),
               person(given = "R.H.",
                      family = "Zamar",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael C Koohafkan <michael.koohafkan@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jeroen Ooms <jeroen@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeroen",
                      family = "Ooms",
                      role = c("aut", "cre"),
                      email = "jeroen@berkeley.edu"),
               person(given = "Forbes",
                      family = "Lindesay",
                      role = "aut"))
as necessary.
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "simon.urbanek@r-project.org")
as necessary.

Package installs .java files.
Package has FOSS license, installs .class/.jar but has no 'java' directory.
Non-standard file/directory found at top level:
  ‘jri’
Found the following possibly unsafe calls:
File ‘rJava/R/import.R’:
  unlockBinding(IMPORTER, env = env)
  assignInNamespace(IMPORTER, importer, envir = env)
File ‘rJava/R/jinit.R’:
  unlockBinding(x, .env)
  unlockBinding(x, pe)
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  jri/src/Makefile.win
  jri/src/win32/Makefile
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
Note: information on .o files is not available
File ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
  Found ‘_exit’, possibly from ‘_exit’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
  Found ‘stdout’, possibly from ‘stdout’ (C)
File ‘rJava/libs/rJava.so’:
  Found non-API calls to R: ‘EXTPTR_PROT’, ‘EXTPTR_PTR’,
    ‘R_CStackLimit’, ‘R_CStackStart’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
License stub is invalid DCF.
Maintainer: ‘Carlos Prieto <cprietos@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carlos",
                      family = "Prieto",
                      role = c("aut", "cre"),
                      email = "cprietos@usal.es"),
               person(given = "David",
                      family = "Barrios",
                      role = "aut",
                      email = "metal@usal.es"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Aaron Schumacher <ajschumacher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aaron",
                      family = "Schumacher",
                      role = c("aut", "cre"),
                      email = "ajschumacher@gmail.com"),
               person(given = "Håkon",
                      family = "Malmedal",
                      role = "aut"),
               person(given = "Måns",
                      family = "Magnusson",
                      role = "aut"))
as necessary.
Maintainer: ‘Shruti Gupta <shrutigupta34@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shruti",
                      family = "Gupta",
                      role = c("aut", "cre"),
                      email = "shrutigupta34@gmail.com"),
               person(given = "Coda",
                      family = "Hale"),
               person(given = "Yammer",
                      family = "Inc.",
                      role = c("ctb", "cph")))
as necessary.
Maintainer: ‘Mutua Kilai <kilaimutua@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mutua",
                    family = "Kilai",
                    role = c("aut", "cre"),
                    email = "kilaimutua@gmail.com")
as necessary.
Maintainer: ‘Halaleh Kamari <halaleh.kamari@univ-evry.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Halaleh",
                    family = "Kamari",
                    role = c("aut", "cre"),
                    email = "halaleh.kamari@univ-evry.fr")
as necessary.

The Description field contains
  H., Huet, S. and Taupin, M.-L. (2019) <arXiv:1905.13695>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Titus K Rotich <rktitus@uoeld.ac.ke>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Titus", "K"),
                    family = "Rotich",
                    role = c("aut", "cre"),
                    email = "rktitus@uoeld.ac.ke")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘higher_order_metadata.R’
Maintainer: ‘Aldo Marchetto <aldo.marchetto@cnr.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aldo",
                    family = "Marchetto",
                    role = c("aut", "cre"),
                    email = "aldo.marchetto@cnr.it")
as necessary.
Maintainer: ‘Md Ashad Alam <malam@tulane.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Md", "Ashad"),
                    family = "Alam",
                    role = c("aut", "cre"),
                    email = "malam@tulane.edu")
as necessary.
Maintainer: ‘Dennis Boos <boos@ncsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dennis", "D."),
                      family = "Boos",
                      role = "aut"),
               person(given = "Douglas",
                      family = "Nychka",
                      role = "aut"),
               person(given = "Dennis",
                      family = "Boos",
                      role = "cre",
                      email = "boos@ncsu.edu"))
as necessary.
checkRd: (-1) Exponential.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) Gamma.Rd:80: Escaped LaTeX specials: \&
checkRd: (-1) college.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) college.Rd:15: Escaped LaTeX specials: \$
Maintainer: ‘Luke Winslow <lawinslow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Winslow",
                      role = c("aut", "cre"),
                      email = "lawinslow@gmail.com"),
               person(given = "Jordan",
                      family = "Read",
                      role = "aut"),
               person(given = "Richard",
                      family = "Woolway",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Brentrup",
                      role = "aut"),
               person(given = "Taylor",
                      family = "Leach",
                      role = "aut"),
               person(given = "Jake",
                      family = "Zwart",
                      role = "aut"),
               person(given = "Sam",
                      family = "Albers",
                      role = "aut"),
               person(given = "Doug",
                      family = "Collinge",
                      role = "aut"))
as necessary.
File ‘rlang/libs/rlang.so’:
  Found non-API calls to R: ‘ENCLOS’, ‘OBJECT’, ‘PRENV’, ‘PRVALUE’,
    ‘R_PromiseExpr’, ‘Rf_allocSExp’, ‘Rf_findVarInFrame3’, ‘SETLENGTH’,
    ‘SET_BODY’, ‘SET_CLOENV’, ‘SET_ENCLOS’, ‘SET_FORMALS’,
    ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘SET_TYPEOF’, ‘XTRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  chartEvent.Rd: App
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Patricia Conde-Clemente <patricia.condeclemente@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patricia",
                      family = "Conde-Clemente",
                      role = c("aut", "cre"),
                      email = "patricia.condeclemente@gmail.com"),
               person(given = c("Jose", "M."),
                      family = "Alonso",
                      role = "aut"),
               person(given = "Gracian",
                      family = "Trivino",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Wei-Min Wang <wmwang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei-Min",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "wmwang@gmail.com")
as necessary.
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Keck",
                    role = c("aut", "cre"),
                    email = "francois.keck@gmail.com")
as necessary.
Maintainer: ‘Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Otryakhin and Podolskij (2018) <arXiv:1802.06373>, and also different
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jouni Helske <jouni.helske@iki.fi>’

Found the following (possibly) invalid file URI:
  URI: https//cranlogs.r-pkg.org:443/badges/Rlibeemd
    From: README.md
Maintainer: ‘Michael Piccirilli <michael.r.piccirilli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Piccirilli",
                    role = c("aut", "cre"),
                    email = "michael.r.piccirilli@gmail.com")
as necessary.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Maintainer: ‘You-Gan Wang <you-gan.wang@qut.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "You-Gan",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "you-gan.wang@qut.edu.au"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = "aut"),
               person(given = "Aurelien",
                      family = "Callens",
                      role = "aut"),
               person(given = "Na",
                      family = "Wang.",
                      role = "aut"))
as necessary.
Maintainer: ‘Yusuf Bilgic <bilgic@geneseo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yusuf",
                      family = "Bilgic",
                      role = c("aut", "cre"),
                      email = "bilgic@geneseo.edu"),
               person(given = "Herb",
                      family = "Susmann",
                      role = "aut"),
               person(given = "Joseph",
                      family = "McKean",
                      role = "aut"))
as necessary.
Maintainer: ‘Yingsong Hu <yingsonghu@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yingsong",
                      family = "Hu",
                      role = c("aut", "cre"),
                      email = "yingsonghu@hotmail.com"),
               person(given = "Wayne",
                      family = "Murray",
                      role = "aut"),
               person(given = "Yin",
                      family = "Shan",
                      role = "aut"),
               person(family = "Australia.",
                      role = "aut"))
as necessary.
Maintainer: ‘Sunny Kumar <sunny.nitie14@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sunny",
                    family = "Kumar",
                    role = c("aut", "cre"),
                    email = "sunny.nitie14@gmail.com")
as necessary.
Maintainer: ‘Fabian Scheipl <fabian.scheipl@stat.uni-muenchen.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Tong He <hetong007@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tong",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "hetong007@gmail.com"),
               person(given = "Oliver",
                      family = "Keyes",
                      role = "ctb"))
as necessary.

The Description field contains
  in Chinese (http://www.ltp-cloud.com/).
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
checkRd: (-1) ms_simplify.Rd:36: Lost braces
    36 | \url{https://github.com/mbloch/mapshaper/wiki/Simplification-Tips}{link}
       |                                                                   ^
Maintainer: ‘S. H. Wilks <sw463@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S.", "H."),
                      family = "Wilks",
                      role = c("aut", "cre"),
                      email = "sw463@cam.ac.uk"),
               person(given = "Thomas",
                      family = "Lewiner",
                      role = "aut",
                      email = "lewiner@gmail.com"))
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmarchingcubes.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Marshall Brown <mdbrown@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marshall",
                    family = "Brown",
                    role = c("aut", "cre"),
                    email = "mdbrown@fredhutch.org")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘replace_doi.R’
Maintainer: ‘Mark Peterson <mark.phillip.peterson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Peterson",
                    role = c("aut", "cre"),
                    email = "mark.phillip.peterson@gmail.com")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘model-table.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Johan Larsson <johanlarsson@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Johann R. Kleinbub <johann.kleinbub@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Johann", "R."),
                      family = "Kleinbub",
                      role = c("aut", "cre"),
                      email = "johann.kleinbub@gmail.com"),
               person(given = "Fabian",
                      family = "Ramseyer",
                      role = "aut"))
as necessary.
Maintainer: ‘Junhewk Kim <junhewk.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junhewk",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "junhewk.kim@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ci.Rd: lavaan
  mbco.Rd: mxOption
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lukasz Smaga <ls@amu.edu.pl>’

The Description field contains
  <arXiv:2306.03883>). These procedures enable us to verify the overall
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Ryan M. Hope <rmh3093@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ryan", "M."),
                    family = "Hope",
                    role = c("aut", "cre"),
                    email = "rmh3093@gmail.com")
as necessary.
File ‘Rmixmod/libs/Rmixmod.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Object: ‘mixmod.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) histMisclassif.Rd:22: Lost braces
    22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i)
       |                 ^
checkRd: (-1) histMisclassif.Rd:22: Lost braces
    22 | err_i = 1 - max_{k={1,\ldots,K}} P(Z_i=k|x_i)
       |                    ^
Maintainer: ‘Robert M. Kirkpatrick <rkirkpatrick2@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "M."),
                    family = "Kirkpatrick",
                    role = c("aut", "cre"),
                    email = "rkirkpatrick2@vcu.edu")
as necessary.
Maintainer: ‘Herdiantri Sufriyana <herdi@nycu.edu.tw>’

The Description field contains
  <https://htmlpreview.github.io/?https://github.com/herdiantrisufriyana/rmlnomogram/blob/master/doc/ml_nomogram_exemplar.html>.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("See", "file"),
                      family = "AUTHORS",
                      role = "aut"),
               person(given = "Jan",
                      family = "Wijffels",
                      role = "cre",
                      email = "jwijffels@bnosac.be"))
as necessary.
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘decrypt.Rd’ ‘encrypt.Rd’ ‘encrypt_raw.Rd’
checkRd: (-1) nsgaControl.Rd:20-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nsgaControl.Rd:28-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nsgaControl.Rd:36-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nsgaControl.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot-methods.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Henrik A. Friberg <haf@mosek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "MOSEK",
                      family = "ApS",
                      role = "aut"),
               person(given = c("Henrik", "A."),
                      family = "Friberg",
                      role = "cre",
                      email = "haf@mosek.com"))
as necessary.
Found the following calls to attach():
File ‘Rmosek/R/builder.R’:
  attach(builderenv, pos, name, warn.conflicts)
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Priyam Das <pdas@ncsu.edu>’

The Description field contains
  Described in the paper : Das (2016) <arXiv:1604.08616> .
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xu Qin <xuqin@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xu",
                      family = "Qin",
                      role = c("aut", "cre"),
                      email = "xuqin@uchicago.edu"),
               person(given = "Guanglei",
                      family = "Hong",
                      role = "aut"),
               person(given = "Fan",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Kentaro Ueno <ueno_kentaro@kuhp.kyoto-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kentaro",
                    family = "Ueno",
                    role = c("aut", "cre"),
                    email = "ueno_kentaro@kuhp.kyoto-u.ac.jp")
as necessary.
Maintainer: ‘Uwe Menzel <uwemenzel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Uwe",
                    family = "Menzel",
                    role = c("aut", "cre"),
                    email = "uwemenzel@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Iain", "M."),
                      family = "Johnstone",
                      role = "aut"),
               person(given = "Zongming",
                      family = "Ma",
                      role = "aut"),
               person(given = c("Patrick", "O."),
                      family = "Perry",
                      role = "aut"),
               person(given = "Morteza",
                      family = "Shahram",
                      role = "aut"),
               person(given = "Evan",
                      family = "Biederstedt",
                      role = c("aut", "cre"),
                      email = "evan.biederstedt@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/evanbiederstedt/RMTstat
which should likely be
  https://github.com/evanbiederstedt/RMTstat/issues
instead.
Maintainer: ‘Chenyu Ren <chenyu.ren@connect.polyu.hk>’

The Description field contains
  Ting Li, Zhongyuan Lyu, Chenyu Ren, Dong Xia (2023) <arXiv:2302.04437>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Sara Viviani <sara.viviani@yahoo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carlo",
                      family = "Cafiero",
                      role = "aut"),
               person(given = "Sara",
                      family = "Viviani",
                      role = c("aut", "cre"),
                      email = "sara.viviani@yahoo.it"),
               person(given = "Mark",
                      family = "Nord",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘RM.weights-package.Rd’:
    \keyword{ Conditional maximum likelihood, Rasch mo [TRUNCATED]
checkRd: (-1) myTarGetClientList.Rd:33: Lost braces
    33 | {MyTarget API Documenation}{https://target.my.com/doc/api/detailed/#resource_agency_clients}
       |                            ^
checkRd: (-1) rncl.Rd:53-55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:59-63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:65-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:73-78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:80-84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:86-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:92-93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:101-102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:104-105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:107-110: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:112-115: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:117-119: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rncl.Rd:121-124: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kam Hamidieh <khamidieh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kam",
                    family = "Hamidieh",
                    role = c("aut", "cre"),
                    email = "khamidieh@gmail.com")
as necessary.
Maintainer: ‘Yasuhiro Sato <sato.yasuhiro.36c@kyoto-u.jp>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) NlistServersInCategory.Rd:11: Escaped LaTeX specials: \_
Maintainer: ‘Jan C. Thiele <rnetlogo@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jan", "C."),
                    family = "Thiele",
                    role = c("aut", "cre"),
                    email = "rnetlogo@gmx.de")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kasper", "Welbers", "&", "Wouter"),
                      family = "van Atteveldt",
                      role = "aut"),
               person(given = "Kasper",
                      family = "Welbers",
                      role = "cre",
                      email = "kasperwelbers@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compare_documents.Rd’ ‘term_char_sim.Rd’ ‘term_union.Rd’
checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ruizhe Chen <rchen18@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hesen",
                      family = "Li",
                      role = "aut"),
               person(given = "Ruizhe",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "rchen18@uic.edu"),
               person(given = "Hai",
                      family = "Nguyen",
                      role = "aut"),
               person(given = "Yu-Che",
                      family = "Chung",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"))
as necessary.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Maintainer: ‘Bastiaan Quast <bquast@gmail.com>’

The Description field contains
  <arXiv:1412.3555>) and vanilla RNN.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jongbin Jung <me@jongbin.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jongbin",
                    family = "Jung",
                    role = c("aut", "cre"),
                    email = "me@jongbin.com")
as necessary.

The Description field contains
  implemented in Jung et al. (2017) <arXiv:1702.04690> based on Rosenbaum
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘projectRoads.Rd’
Maintainer: ‘Aymeric Stamm <aymeric.stamm@math.cnrs.fr>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  package. See Aleman-Gomez et al. (2021) <arXiv:2103.08874> for details
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) fData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fData.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mfData.Rd:28-29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:45-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:49-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:52-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:55-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:59-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:63-65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:66-69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:70-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) outliergram.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:95-96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) outliergram.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Pablo Barbera <pablo.barbera@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Gentry",
                      role = "aut",
                      email = "geoffjentry@gmail.com"),
               person(given = c("Duncan", "Temple"),
                      family = "Lang",
                      role = "aut",
                      email = "duncan@r-project.org"),
               person(given = "Pablo",
                      family = "Barbera",
                      role = "cre",
                      email = "pablo.barbera@nyu.edu"))
as necessary.
Maintainer: ‘Paul Smirnov <s.paul@mail.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Smirnov",
                    role = c("aut", "cre"),
                    email = "s.paul@mail.ru")
as necessary.
File ‘robfilter/libs/robfilter.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Ufuk Beyaztas <ufukbeyaztas@gmail.com>’

The Description field contains
  <arXiv:2111.01238> and Beyaztas, U., and Shang, H. L. (2022)
  <arXiv:2203.05065>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
Maintainer: ‘Joseph Blubaugh <jestonblu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Blubaugh",
                    role = c("aut", "cre"),
                    email = "jestonblu@gmail.com")
as necessary.
Maintainer: ‘Daniel Grose <dan.grose@lancaster.ac.uk>’

The Description field contains
  (2014) <arXiv:1204.3358> and Agamennoni et al. (2018)
  of Ruckdeschel et al. (2014) <arXiv:1204.3358>, as well as the
  <arXiv:2007.03238>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wennan Chang <wnchang@iu.edu>’

The Description field contains
  <arXiv:2005.11599>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Aditya Mishra <amishra@flatironinstitute.org>’

The Description field contains
  <arXiv:1909.04990>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jakob Raymaekers <j.raymaekers@maastrichtuniversity.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jakob",
                    family = "Raymaekers",
                    role = c("aut", "cre"),
                    email = "j.raymaekers@maastrichtuniversity.nl")
as necessary.

The Description field contains
  F. (2022) <arXiv:2202.08060>.  All algorithms run in quasilinear time.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) predict.robu.Rd:36-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:43-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.robu.Rd:50-55: Lost braces in \itemize; meant \describe ?
Maintainer: ‘A. Randriamiharisoa <exelami@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alfio",
                      family = "Marazzi",
                      role = "aut",
                      email = "Alfio.Marazzi@unisante.ch"),
               person(given = "Jean-Luc",
                      family = "Muralti",
                      role = "aut"),
               person(given = "A.",
                      family = "Randriamiharisoa",
                      role = "cre",
                      email = "exelami@gmail.com"))
as necessary.
Maintainer: ‘Ray Bai <raybaistat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ray",
                    family = "Bai",
                    role = c("aut", "cre"),
                    email = "raybaistat@gmail.com")
as necessary.

The Description field contains
  (2020) <arXiv:2005.02930> for correcting and quantifying publication
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Erlis Ruli <erlisr@yahoo.it>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  by Ruli et al. (2017) <arXiv:1706.01752>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Charles Bouveyron <charles.bouveyron@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "Bouveyron", "&", "Stephane"),
                      family = "Girard",
                      role = "aut"),
               person(given = "Charles",
                      family = "Bouveyron",
                      role = "cre",
                      email = "charles.bouveyron@gmail.com"))
as necessary.
Maintainer: ‘Chuan Hong <hong.chuan.hannah@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chuan",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "hong.chuan.hannah@gmail.com"),
               person(given = "Yong",
                      family = "Chen",
                      role = "aut"),
               person(given = "Yang",
                      family = "Ning",
                      role = "aut"),
               person(given = "Hao",
                      family = "Wu",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  fastGrplars.cpp:158:24: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  fastGrplars.cpp:239:42: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  fastLars.cpp:103:21: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  fastLars.cpp:180:35: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  fastLars.cpp:181:33: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/robustHD.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Zijian Guo <zijguo@stat.rutgers.edu>’

The Description field contains
  variables via TSHT('Guo et al.' (2016) <arXiv:1603.05224>) and
  SearchingSampling('Guo' (2021) <arXiv:2104.06911>), which are effective
  <arXiv:1609.06713>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Santiago I. Hurtado <santih@carina.fcaglp.unlp.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Santiago", "I."),
                    family = "Hurtado",
                    role = c("aut", "cre"),
                    email = "santih@carina.fcaglp.unlp.edu.ar")
as necessary.
Maintainer: ‘Youyi Fong <youyifong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Youyi",
                    family = "Fong",
                    role = c("aut", "cre"),
                    email = "youyifong@gmail.com")
as necessary.
Maintainer: ‘Maria del Carmen Calatrava Moreno <mc.calatrava.moreno@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maria", "del", "Carmen", "Calatrava"),
                      family = "Moreno",
                      role = c("aut", "cre"),
                      email = "mc.calatrava.moreno@gmail.com"),
               person(given = "Thomas",
                      family = "Auzinger",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ian M. Johnson <ijca2013@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ian", "M."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "ijca2013@gmail.com")
as necessary.
Maintainer: ‘Claudio Agostinelli <claudio.agostinelli@unitn.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Claudio",
                      family = "Agostinelli",
                      role = c("aut", "cre"),
                      email = "claudio.agostinelli@unitn.it"),
               person(given = c("Victor", "J."),
                      family = "Yohai",
                      role = "aut",
                      email = "victoryohai@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Luke McGuinness <luke.mcguinness@bristol.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/mcguinlu/robvis
which should likely be
  https://github.com/mcguinlu/robvis/issues
instead.
Maintainer: ‘Martin Lauss <martin.lauss@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Lauss",
                    role = c("aut", "cre"),
                    email = "martin.lauss@med.lu.se")
as necessary.
Maintainer: ‘Ben Sherwood <ben.sherwood@ku.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Sherwood",
                    role = c("aut", "cre"),
                    email = "ben.sherwood@ku.edu")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) descriptiveTable.Rd:18: Lost braces
    18 | other object type that does not fail in code{model.frame(object)}.}
       |                                             ^
Maintainer: ‘Jeffrey R. Webber <jwebber@geo.umass.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "R."),
                    family = "Webber",
                    role = c("aut", "cre"),
                    email = "jwebber@geo.umass.edu")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘rocNIT.Rd’:
    \keyword{Non-inferiority test, receiver operating  [TRUNCATED]
Maintainer: ‘Felix G.M. Ernst <felix.gm.ernst@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
checkRd: (-1) performance.Rd:35: Escaped LaTeX specials: \#
checkRd: (-1) performance.Rd:36: Escaped LaTeX specials: \# \# \#
checkRd: (-1) performance.Rd:37: Escaped LaTeX specials: \# \#
Maintainer: ‘David Kneis <david.kneis@tu-dresden.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Kneis",
                    role = c("aut", "cre"),
                    email = "david.kneis@tu-dresden.de")
as necessary.
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The Description field contains
  described in Centofanti et al. (2021) <arXiv:2112.10643>.  It allows
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rofanova.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Benjamin Schwendinger <benjaminschwe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Benjamin",
                    family = "Schwendinger",
                    role = c("aut", "cre"),
                    email = "benjaminschwe@gmail.com")
as necessary.
checkRd: (-1) ROI_plugin_build_equality_constraints.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_equality_constraints.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_plugin_build_inequality_constraints.Rd:29: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) ROI_solve.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:28-30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ROI_solve.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Author field differs from that derived from Authors@R
  Author:    ‘Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Siqi Zhang [ctb], Russell Goldenberg [ctb] (The JS library inst/resources/scrollama/scrollama.min.js)’
  Authors@R: ‘Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Siqi Zhang [ctb], Russell Goldenberg [ctb] (The JS library inst/resources/scrollama/scrollama.min.js)’
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Paul Murrell <paul@stat.auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "paul@stat.auckland.ac.nz")
as necessary.
Maintainer: ‘Pingping Qu <quping14@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pingping",
                      family = "Qu",
                      role = c("aut", "cre"),
                      email = "quping14@gmail.com"),
               person(given = "John",
                      family = "Crowley",
                      role = "aut"))
as necessary.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
checkRd: (-1) update_tidy_omic.Rd:16-17: Lost braces
    16 | in \code{updated_tidy_data} (names) and the table {features, samples,
       |                                                   ^
Maintainer: ‘Evan Biederstedt <evan.biederstedt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeffrey",
                      family = "Horner",
                      role = "aut"),
               person(given = "Evan",
                      family = "Biederstedt",
                      role = c("aut", "cre"),
                      email = "evan.biederstedt@gmail.com"))
as necessary.
Maintainer: ‘Yoann Robin <yoann.robin.k@gmail.com>’

The Description field contains
  generator, see Mezzadri, F. (2007) <arXiv:math-ph/0609050>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bob Rudis <bob@rud.is>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Ruokun Huang <hruokun.2008@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ruokun",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "hruokun.2008@gmail.com")
as necessary.
Maintainer: ‘Thomas P. Fuller <thomas.fuller@coherentlogic.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "P."),
                    family = "Fuller",
                    role = c("aut", "cre"),
                    email = "thomas.fuller@coherentlogic.com")
as necessary.
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.
checkRd: (-1) read_ascii.Rd:33: Lost braces
    33 | \item{respondent_pattern}{For use when the file does not contain a line for every card for every respondent (or contains extra lines that correspond to no respondent), a regular expression that matches the file's respondent identifier; e.g., if the respondent number is stored in the first four digits of each line, preceded by a space, "(?<=^\\s)\\d{4}".}
       |                                                                                                                                                                                                                                                                                                                                                               ^
Maintainer: ‘Yi Pan <ypan1988@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yi",
                    family = "Pan",
                    role = c("aut", "cre"),
                    email = "ypan1988@gmail.com")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/roptim.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Rajendra S. Pingte <rajendra.pingte@oracle.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Mukhin",
                      role = "aut"),
               person(given = c("David", "A."),
                      family = "James",
                      role = "aut"),
               person(given = "Jake",
                      family = "Luciani",
                      role = "aut"),
               person(given = c("Rajendra", "S."),
                      family = "Pingte",
                      role = "cre",
                      email = "rajendra.pingte@oracle.com"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Max Czapanskiy [aut, cre] (0000-0002-6302-905X), Shirel Kahane-Rapport [aut] (<https://orcid.org/0000-0002-5208-1100>), Jeremy Goldbogen [aut] (<https://orcid.org/0000-0002-4170-7294>)’
  Authors@R: ‘Max Czapanskiy [aut, cre] (ORCID-ID: 0000-0002-6302-905X), Shirel Kahane-Rapport [aut] (ORCID: <https://orcid.org/0000-0002-5208-1100>), Jeremy Goldbogen [aut] (ORCID: <https://orcid.org/0000-0002-4170-7294>)’
Maintainer: ‘Martin Wiegand <Martin.Wiegand@mrc-bsu.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Wiegand",
                    role = c("aut", "cre"),
                    email = "martin.wiegand@mrc-bsu.cam.ac.uk")
as necessary.

The Description field contains
  Wiegand and Nadarajah (2019) <arXiv:1903.09556>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nicola Lunardon <nicola.lunardon@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nicola",
                      family = "Lunardon",
                      role = c("aut", "cre"),
                      email = "nicola.lunardon@unimib.it"),
               person(given = "Giovanna",
                      family = "Menardi",
                      role = "aut"),
               person(given = "Nicola",
                      family = "Torelli",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fanova.Rd: leveneTest, lmer, Anova
  formatPvalue.Rd: noZero, formatCI
  formatR.Rd: noZero, formatCI
  ggBoxplot.Rd: ggplot, geom_boxplot
  ggqq.Rd: ggplot
  oneway.Rd: leveneTest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) osm_url_spec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{server_url}{A url using `{x}`, `{y}`, and `{z}` for the x, y, and
       |                                ^
checkRd: (-1) osm_url_spec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{server_url}{A url using `{x}`, `{y}`, and `{z}` for the x, y, and
       |                                       ^
checkRd: (-1) osm_url_spec.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{server_url}{A url using `{x}`, `{y}`, and `{z}` for the x, y, and
       |                                                  ^
Maintainer: ‘Michel Ballings <michel.ballings@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Maintainer: ‘Marie Delacre <marie.delacre@ulb.ac.be>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Intention.Rd’:
    \keyword{Reminder,}
Maintainer: ‘Adam Spannbauer <spannbaueradam@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Spannbauer",
                    role = c("aut", "cre"),
                    email = "spannbaueradam@gmail.com")
as necessary.
Maintainer: ‘Adrian Bowman <adrian.bowman@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Bowman",
                      role = "aut"),
               person(family = "Bowman",
                      role = "aut"),
               person(family = "Gibson",
                      role = "aut"),
               person(family = "Crawford",
                      role = "aut"),
               person(given = "Adrian",
                      family = "Bowman",
                      role = "cre",
                      email = "adrian.bowman@glasgow.ac.uk"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Clyde.Rd:8: Lost braces
     8 | These data record the water quality, in terms of dissolved oxygen (\code{DO}) on a percentage scale, at a number of sampling stations (\code{Station}) on the River Clyde.  The date (\code{Day}, \\code{Month}, \code{Year}) is also available, along with the day of the year (\code{Doy} between 1 and 365) and an identified (\code{id}) of the survey on which each measurement was made.
       |                                                                                                                                                                                                         ^
checkRd: (-1) rp.pos.Rd:22-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:25-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:28-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:31-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rp.pos.Rd:43: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Stephan Dlugosz <stephan.dlugosz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephan",
                    family = "Dlugosz",
                    role = c("aut", "cre"),
                    email = "stephan.dlugosz@googlemail.com")
as necessary.
Maintainer: ‘Giuliano Galimberti <giuliano.galimberti@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giuliano",
                      family = "Galimberti",
                      role = c("aut", "cre"),
                      email = "giuliano.galimberti@unibo.it"),
               person(given = "Gabriele",
                      family = "Soffritti",
                      role = "aut"),
               person(given = c("Matteo", "Di"),
                      family = "Maso",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Manuel David Peris Diaz <madape@alumni.uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Manuel", "David", "Peris"),
                      family = "Diaz",
                      role = c("aut", "cre"),
                      email = "madape@alumni.uv.es"),
               person(given = c("Maria", "Isabel", "Alcoriza"),
                      family = "Balaguer",
                      role = "aut"))
as necessary.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Shengyu",
                      family = "Zhang",
                      role = "aut",
                      email = "syzhang@uw.edu"),
               person(given = "Douglas",
                      family = "Martin",
                      role = "aut",
                      email = "doug@amath.washington.edu"))
as necessary.
Maintainer: ‘Timothy I. Cannings <timothy.cannings@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "I."),
                      family = "Cannings",
                      role = c("aut", "cre"),
                      email = "timothy.cannings@ed.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Xin",
                      family = "Chen",
                      role = "aut",
                      email = "chenx26@uw.edu"))
as necessary.
Maintainer: ‘Colin FAY <contact@colinfay.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Colin",
                    family = "FAY",
                    role = c("aut", "cre"),
                    email = "contact@colinfay.me")
as necessary.
checkRd: (-1) rpivotTable.Rd:60: Lost braces; missing escapes or markup?
    60 | An example is: onRefresh=htmlwidgets::JS("function(config) { Shiny.onInputChange('myPivotData', config); }")
       |                                                            ^
Maintainer: ‘Peter Filzmoser <peter.filzmoser@tuwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Filzmoser",
                      role = c("aut", "cre"),
                      email = "peter.filzmoser@tuwien.ac.at"),
               person(given = "Sukru",
                      family = "Acitas",
                      role = "aut"),
               person(given = "Birdal",
                      family = "Senoglu",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Plattner",
                      role = "aut"))
as necessary.
Maintainer: ‘E. Andres Houseman <eahouseman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "Andres"),
                      family = "Houseman",
                      role = c("aut", "cre"),
                      email = "eahouseman@gmail.com"),
               person(family = "Sc.D.",
                      role = "aut"),
               person(given = c("Devin", "C."),
                      family = "Koestler",
                      role = "aut"),
               person(family = "Ph.D.",
                      role = "aut"))
as necessary.
checkRd: (-1) plotImage.blcTree.Rd:17: Lost braces
    17 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
checkRd: (-1) plotImage.glcTree.Rd:16: Lost braces
    16 |   \item{method}{Method to determine width of columns that represent classes: \dQuote{weight} (subject weight in class) or dQuote{binary} (depth in tree).}
       |                                                                                                                                 ^
Found the following significant warnings:
  rowwise_imax_idx.cpp:17:21: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = int; derived = arma::subview<int>; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  rowwise_max_idx.cpp:17:21: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = double; derived = arma::subview<double>; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rpm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Sascha Herrmann <sascha.herrmann.consulting@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sascha",
                    family = "Herrmann",
                    role = c("aut", "cre"),
                    email = "sascha.herrmann.consulting@gmail.com")
as necessary.
Maintainer: ‘Aaron Schlegel <aaron@aaronschlegel.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Schlegel",
                    role = c("aut", "cre"),
                    email = "aaron@aaronschlegel.me")
as necessary.
checkRd: (-1) get.poetry.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{output}{Can be any or a combination of the input terms {'author', 'title', 'lines', 'linecount'}. If NULL, all
       |                                                              ^
Maintainer: ‘Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = c("aut", "cre"),
                      email = "lafaye@unsw.edu.au"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = "aut"),
               person(given = "Jeremie",
                      family = "Riou",
                      role = "aut"))
as necessary.
Maintainer: ‘Torsten Schoeps <torsten.schoeps@bioinf.med.uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Heiko", "Mannsperger", "with", "contributions", "of", "Stephan"),
                      family = "Gade",
                      role = "aut"),
               person(given = "Torsten",
                      family = "Schoeps",
                      role = "cre",
                      email = "torsten.schoeps@bioinf.med.uni-goettingen.de"))
as necessary.
Maintainer: ‘Tomas Boril <borilt@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) as.tg.Rd:18: Lost braces; missing escapes or markup?
    18 | Renames the \code{class(tg)["name"]} attribute and sets {class(tg)["type"] <- "TextGrid"} (if it is not already set)
       |                                                         ^
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Ruscio",
                    role = c("aut", "cre"),
                    email = "ruscio@tcnj.edu")
as necessary.
Maintainer: ‘Miguel Conde <miguelco2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miguel",
                    family = "Conde",
                    role = c("aut", "cre"),
                    email = "miguelco2000@gmail.com")
as necessary.
checkRd: (-1) check_node.Rd:11: Lost braces
    11 | \item{x}{\\code{list}, the node to check}
       |                ^
Maintainer: ‘Thomas J. Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dirk", "Eddelbuettel", "with", "contributions", "by", "Bill"),
                      family = "Evans",
                      role = "aut"),
               person(given = "Mike",
                      family = "Birdgeneau",
                      role = "aut"),
               person(given = "Henrik",
                      family = "Bengtsson",
                      role = "aut"),
               person(given = "Seth",
                      family = "Wenchel",
                      role = "aut"),
               person(given = "Colin",
                      family = "Gillespie",
                      role = "aut"),
               person(given = "Chan-Yub",
                      family = "Park",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = "cre",
                      email = "edd@debian.org"))
as necessary.
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) ex.Rd:20: Lost braces
    20 | Execute a ops-dag using `code{wrap()}` data as values.
       |                              ^
checkRd: (-1) sql_node.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{expand_braces}{logical if TRUE use {col} notation to ensure {col} is a column name.}
       |                                          ^
checkRd: (-1) sql_node.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{expand_braces}{logical if TRUE use {col} notation to ensure {col} is a column name.}
       |                                                                   ^
checkRd: (-1) R2_lik.Rd:37: Lost braces; missing escapes or markup?
    37 | \code{R2_lik()} is also computed for LMMs and GLMMs in the {MuMIn} package.
       |                                                            ^
checkRd: (-1) R2_pred.Rd:32: Lost braces; missing escapes or markup?
    32 | Note that the version of \code{binaryPGLMM()} in the package ape is replaced by a version contained within {rr2} that outputs all of the required information for the calculation of R2_resid.
       |                                                                                                            ^
checkRd: (-1) R2_resid.Rd:69: Lost braces; missing escapes or markup?
    69 | Note that the version of \code{binaryPGLMM()} in the package ape is replaced by a version contained within {rr2} that outputs all of the required information for the calculation of \code{R2_resid()}
       |                                                                                                            ^
File ‘rrapply/libs/rrapply.so’:
  Found non-API call to R: ‘Rf_isValidString’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Wei Jiang <wjiangaa@connect.ust.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "wjiangaa@connect.ust.hk"),
               person(given = "Jing-Hao",
                      family = "Xue",
                      role = "aut"),
               person(given = "Weichuan",
                      family = "Yu",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘HL_H0.pdf’ ‘pi0infer.pdf’ ‘rate.txt’ ‘summary.txt’
Maintainer: ‘Yi He <yi.he@stats.oxon.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "yi.he@stats.oxon.org"),
               person(given = "Yuelin",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Maintainer: ‘Jeffrey Endelman <endelman@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeffrey",
                    family = "Endelman",
                    role = c("aut", "cre"),
                    email = "endelman@wisc.edu")
as necessary.
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Maintainer: ‘Ludovik Çoba <Ludovik.Coba@inf.unibz.it>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘rrecsys.Rd’:
    http://dx.doi.org/10.1109/MC.2009.263
checkRd: (-1) rrecsys.Rd:72: Lost braces; missing escapes or markup?
    72 |  The average deviation rating $dev_{ij}$ between co-rated items is defined by:
       |                                    ^
checkRd: (-1) rrecsys.Rd:76: Lost braces; missing escapes or markup?
    76 |  Where $c_{ij}$ is the number of co-ratings between items $i$ and $j$ and $r_{ui}$ is an existing rating for user $u$ on item $i$. The Weighted Slope One takes into account both, information from users who rated the same item and the number of observed ratings.
       |           ^
checkRd: (-1) rrecsys.Rd:76: Lost braces; missing escapes or markup?
    76 |  Where $c_{ij}$ is the number of co-ratings between items $i$ and $j$ and $r_{ui}$ is an existing rating for user $u$ on item $i$. The Weighted Slope One takes into account both, information from users who rated the same item and the number of observed ratings.
       |                                                                              ^
Maintainer: ‘Michael Treadwell <michael.treadwell@interworks.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Treadwell",
                    role = c("aut", "cre"),
                    email = "michael.treadwell@interworks.com")
as necessary.
checkRd: (-1) lateformeeting.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lateformeeting.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lfm_clean.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) regrad.Rd:46: Lost braces; missing escapes or markup?
    46 |  \item \code{x-axis} {1st column: The names of the different institutions}
       |                      ^
checkRd: (-1) regrad.Rd:47: Lost braces; missing escapes or markup?
    47 |  \item \code{y-axis} {2nd column: The value to show completeness}
       |                      ^
Maintainer: ‘Bowen Wang <bowenwang7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bowen",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "bowenwang7@gmail.com")
as necessary.
Maintainer: ‘Houtao Deng <softwaredeng@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Panos Toulis <panos.toulis@chicagobooth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panos",
                    family = "Toulis",
                    role = c("aut", "cre"),
                    email = "panos.toulis@chicagobooth.edu")
as necessary.
checkRd: (-1) rrinf_clust.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{clustering}{A \code{List} that specifies a clustering of datapoint indexes {1, ..., n}. See \link{example_clustering} for details.}
       |                                                                                  ^
checkRd: (-1) rrtest_clust.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{clustering}{A \code{List} that specifies a clustering of datapoint indexes {1, ..., n}.
       |                                                                                  ^
Maintainer: ‘Matthias Greiner <matthias.greiner@bfr.bund.de>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘rriskDistributions-package.Rd’:
    \concept{
      Beta, Normal, Lognormal, Cauhy, Chi-Quad [TRUNCATED]
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sort_tips.Rd’ ‘sort_tips.r’ ‘tips.r’ ‘validate_rankedPhylo.r’
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rrpack.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) mrrr.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:69-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:71-72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mrrr.Rd:74: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gregory Hunt <ghunt@wm.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Beatriz Cobo Rodríguez <beacr@ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Beatriz", "Cobo"),
                      family = "Rodríguez",
                      role = c("aut", "cre"),
                      email = "beacr@ugr.es"),
               person(given = c("María", "del", "Mar", "Rueda"),
                      family = "García",
                      role = "aut"),
               person(given = c("Antonio", "Arcos"),
                      family = "Cebrián",
                      role = "aut"))
as necessary.
Maintainer: ‘Prabhanjan Tattar <prabhanjannt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prabhanjan",
                    family = "Tattar",
                    role = c("aut", "cre"),
                    email = "prabhanjannt@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CART_Dummy.Rd’:
    \keyword{CART, partitions}
  File ‘CT.Rd’:
    \keyword{smoothing, hanning}
  File ‘GC.Rd’:
    \keyword{Logistic Regression, Credit data}
  File ‘octane.Rd’:
    \keyword{Histogram, Stem-and-leaf plots}
Maintainer: ‘Paulo Prado <prado@ib.usp.br>’

The Description field contains
  Resampling Stats (http://www.resample.com) is an add-in for running
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Maintainer: ‘Xiuquan (Xander) Wang <xiuquan.wang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiuquan",
                      family = "Wang",
                      role = "aut",
                      comment = "Xander"),
               person(given = "Xiuquan",
                      family = "Wang",
                      role = "cre",
                      email = "xiuquan.wang@gmail.com",
                      comment = "Xander"))
as necessary.
checkRd: (-1) rSCA.modeling.Rd:61: Lost braces; missing escapes or markup?
    61 |                 a predefined string to specify how the information of leaf nodes will be stored in the map file. A full list of options for mapvalue is: {mean, max, min, median, interval, radius, variation, random}. Default value is "mean". Use "interval" to get an interval bounded by the minimum and maximum values, (i.e., [min, max]). The option of "radius" will output the mean and the radius [i.e., (max - min) / 2] at the same time. Use "variation" to output the mean and the standard deviation. The option of "random" will output the information as an interval like the "interval" option, but it will use a random value within the interval as the predicted value.
       |                                                                                                                                                          ^
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
File ‘RSclient/libs/RSclient.so’:
  Found non-API calls to R: ‘BODY’, ‘EXTPTR_PTR’, ‘FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Sai Chimata <schimata@yotabitesllc.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sai",
                    family = "Chimata",
                    role = c("aut", "cre"),
                    email = "schimata@yotabitesllc.com")
as necessary.
Maintainer: ‘Mudassir Shabbir <mudassir.shabbir@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mudassir",
                      family = "Shabbir",
                      role = c("aut", "cre"),
                      email = "mudassir.shabbir@gmail.com"),
               person(given = "Nabil",
                      family = "Mustafa",
                      role = "aut"),
               person(given = "Saurabh",
                      family = "Ray",
                      role = "aut"))
as necessary.
Maintainer: ‘EL KHMISSI Mohamed <mohamed.el-khmissi01@etu.umontpellier.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("EL", "KHMISSI"),
                    family = "Mohamed",
                    role = c("aut", "cre"),
                    email = "mohamed.el-khmissi01@etu.umontpellier.fr")
as necessary.
Maintainer: ‘Mitra Ebrahimpoor<mitra.ebrahimpoor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mitra",
                    family = "Ebrahimpoor",
                    role = c("aut", "cre"),
                    email = "mitra.ebrahimpoor@gmail.com")
as necessary.
checkRd: (-1) remoteDriver-class.Rd:39-40: Lost braces
    39 | browser being used; should be one of {chrome|firefox|htmlunit|
       |                                      ^
checkRd: (-1) remoteDriver-class.Rd:50: Lost braces; missing escapes or markup?
    50 | of {WINDOWS|XP|VISTA|MAC|LINUX|UNIX}. When requesting a new session,
       |    ^
checkRd: (-1) remoteDriver-class.Rd:194-196: Lost braces
   194 |   element, available schemes: {"class name", "css selector",
       |                               ^
checkRd: (-1) webElement-class.Rd:50-52: Lost braces
    50 |     element, available schemes: {"class name", "css selector",
       |                                 ^
checkRd: (-1) webElement-class.Rd:67-69: Lost braces
    67 |     element, available schemes: {"class name", "css selector",
       |                                 ^
'library' or 'require' call not declared from: ‘selectr’
Maintainer: ‘Zhiyong Zhang <zhiyongzhang@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ke-Hai",
                      family = "Yuan",
                      role = "aut"),
               person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhiyongzhang@nd.edu"))
as necessary.
Maintainer: ‘Subhasree Bose <subhasree10.7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Subhasree", "Bose", "with", "contributons", "from", "Saptarsi"),
                      family = "Goswami.",
                      role = "aut",
                      email = "subhasree10.7@gmail.com"),
               person(given = "Subhasree",
                      family = "Bose",
                      role = "cre",
                      email = "subhasree10.7@gmail.com"))
as necessary.
Maintainer: ‘Youhua Chen <haydi@126.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Youhua", "Chen,Tsung-Jen"),
                      family = "Shen",
                      role = "aut"),
               person(given = "Youhua",
                      family = "Chen",
                      role = "cre",
                      email = "haydi@126.com"))
as necessary.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

Package has FOSS license, installs .class/.jar but has no 'java' directory.

The BugReports field in DESCRIPTION has
  https://github.com/s-u/Rserve
which should likely be
  https://github.com/s-u/Rserve/issues
instead.
Note: information on .o files is not available
File ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rserve/libs/Rserve.so’:
  Found ‘exit’, possibly from ‘exit’ (C)
  Found ‘rand’, possibly from ‘rand’ (C)
  Found ‘random’, possibly from ‘random’ (C)
  Found ‘srandom’, possibly from ‘srandom’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
File ‘Rserve/libs/Rserve.so’:
  Found non-API calls to R: ‘BODY’, ‘FORMALS’, ‘R_Consolefile’,
    ‘R_Outputfile’, ‘R_TempDir’, ‘R_Visible’, ‘R_curErrorBuf’,
    ‘ptr_R_Busy’, ‘ptr_R_ClearerrConsole’, ‘ptr_R_FlushConsole’,
    ‘ptr_R_ReadConsole’, ‘ptr_R_ResetConsole’, ‘ptr_R_ShowMessage’,
    ‘ptr_R_WriteConsole’, ‘ptr_R_WriteConsoleEx’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Jonathan Bourne <jonathan.s.bourne@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Martin Zaefferer <martin.zaefferer@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Konen",
                      role = "aut",
                      email = "wolfgang.konen@fh-koeln.de"),
               person(given = "Martin",
                      family = "Zaefferer",
                      role = c("aut", "cre"),
                      email = "martin.zaefferer@gmx.de"),
               person(given = c("Patrick", "Koch;", "Bug"),
                      family = "hunting",
                      role = "aut"),
               person(given = c("testing", "by", "Ayodele"),
                      family = "Fasika",
                      role = "aut"),
               person(given = "Ashwin",
                      family = "Kumar",
                      role = "aut"),
               person(given = "Prawyn",
                      family = "Jebakumar",
                      role = "aut"))
as necessary.
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Maintainer: ‘Jonathan Dench <jdenc017@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Dench",
                    role = c("aut", "cre"),
                    email = "jdenc017@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_indices.Rd’ ‘get_stac_data.R’ ‘get_stac_data.Rd’
    ‘landsat_mask_function.Rd’
Maintainer: ‘Yumi Kondo <y.kondo@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yumi",
                    family = "Kondo",
                    role = c("aut", "cre"),
                    email = "y.kondo@stat.ubc.ca")
as necessary.
Maintainer: ‘Johannes Burkhardt <johannes.burkhardt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Burkhardt",
                    role = c("aut", "cre"),
                    email = "johannes.burkhardt@gmail.com")
as necessary.
Maintainer: ‘Paul F. Petrowski <pfpetrowski@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "F."),
                    family = "Petrowski",
                    role = c("aut", "cre"),
                    email = "pfpetrowski@gmail.com")
as necessary.
'library' or 'require' call not declared from: ‘plot3D’
Maintainer: ‘Michael Lawrence <michafla@gene.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Lawrence",
                      role = c("aut", "cre"),
                      email = "michafla@gene.com"),
               person(given = "Gabe",
                      family = "Becker",
                      role = "aut"),
               person(given = "Jan",
                      family = "Vogel",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Mark van der Loo <mark.vanderloo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "van der Loo",
                    role = c("aut", "cre"),
                    email = "mark.vanderloo@gmail.com")
as necessary.
Maintainer: ‘Anatoly Sorokin <lptolik@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rSpectral.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rSpectral.Rd: igraph
  spectral_igraph_communities.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Theodore Lytras <thlytras@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Theodore",
                    family = "Lytras",
                    role = c("aut", "cre"),
                    email = "thlytras@gmail.com")
as necessary.
Maintainer: ‘Tiago Mendes Dantas <t.mendesdantas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tiago", "Mendes"),
                    family = "Dantas",
                    role = c("aut", "cre"),
                    email = "t.mendesdantas@gmail.com")
as necessary.
Maintainer: ‘Melina Vidoni <melinavidoni@santafe-conicet.gov.ar>’

Found the following (possibly) invalid file URIs:
  URI: reference/get_shortest_path.html
    From: inst/doc/igraph.html
  URI: reference/index.html
    From: inst/doc/rsppfp.html
  URI: reference/direct_graph.html
    From: inst/doc/rsppfp.html
  URI: reference/parse_vpath.html
    From: inst/doc/rsppfp.html
  URI: articles/benchmark.html
    From: README.md
  URI: articles/references.html
    From: README.md

Found the following URLs which should use \doi (with the DOI name only):
  File ‘modify_graph_hsu.Rd’:
    https://doi.org/10.1007/978-3-642-03095-6_60
  File ‘modify_graph_vd.Rd’:
    https://doi.org/10.1016/j.ejor.2004.01.032
Maintainer: ‘Subhasree Bose <subhasree10.7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Subhasree",
                    family = "Bose",
                    role = c("aut", "cre"),
                    email = "subhasree10.7@gmail.com")
as necessary.
Maintainer: ‘Busra Sevinc <busra.sevincc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Busra",
                      family = "Sevinc",
                      role = c("aut", "cre"),
                      email = "busra.sevincc@gmail.com"),
               person(given = "Bekir",
                      family = "Cetintav",
                      role = "aut"),
               person(given = "Melek",
                      family = "Esemen",
                      role = "aut"),
               person(given = "Selma",
                      family = "Gurler",
                      role = "aut"))
as necessary.
Maintainer: ‘Jesse Krijthe <jkrijthe@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/jkrijthe/RSSL
which should likely be
  https://github.com/jkrijthe/RSSL/issues
instead.
Found the following significant warnings:
  utils.cpp:31:17: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&, arma::uword&) const [with elem_type = double; derived = arma::subview<double>; arma::uword = unsigned int]’ is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RSSL.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = c("aut", "cre"),
                      email = "rezgararabzadeh@ut.ac.ir"),
               person(given = "Parisa",
                      family = "Aberi",
                      role = "aut"),
               person(given = "Kaveh",
                      family = "Panaghi",
                      role = "aut"),
               person(given = "Shahab",
                      family = "Araghinejad",
                      role = "aut"),
               person(given = "Majid",
                      family = "Montaseri",
                      role = "aut"))
as necessary.
Maintainer: ‘Shawn T. O'Neil <shawn.oneil@cgrb.oregonstate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Shawn", "T."),
                    family = "O'Neil",
                    role = c("aut", "cre"),
                    email = "shawn.oneil@cgrb.oregonstate.edu")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom-funs.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  launch_shinystan.stanreg.Rd: shinystan-package
  loo.stanreg.Rd: loo-package
  plot.stanreg.Rd: bayesplot
  pp_check.stanreg.Rd: bayesplot
  stan_betareg.Rd: stanfit-class
  stan_glm.Rd: stanfit-class
  stan_lm.Rd: stanfit-class
  stan_polr.Rd: stanfit-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) box_m.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) box_m.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) box_m.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) box_m.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wilcox_test.Rd:91: Lost braces; missing escapes or markup?
    91 |  distribution of \code{(u+v)/2}, where \code{u} and {v} are independent, each
       |                                                     ^
Maintainer: ‘Xuehui YANG <jianghang@bagualu.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xuehui",
                    family = "YANG",
                    role = c("aut", "cre"),
                    email = "jianghang@bagualu.net")
as necessary.
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Hoff",
                      role = c("aut", "cre"),
                      email = "peter.hoff@duke.edu"),
               person(given = "Alexander",
                      family = "Franks",
                      role = "aut"))
as necessary.
Found the following significant warnings:
  predictMlc.cpp:26:42: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = double; derived = arma::subview<double>; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RStoolbox.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Josef Leydold <josef.leydold@wu.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Leydold",
                    role = c("aut", "cre"),
                    email = "josef.leydold@wu.ac.at")
as necessary.
Maintainer: ‘Martin Atzmueller <martin@atzmueller.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Atzmueller",
                    role = c("aut", "cre"),
                    email = "martin@atzmueller.net")
as necessary.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Rohan Sadler <rohan.sadler@ausvet.com.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Evan",
                      family = "Sergeant",
                      role = "aut"),
               person(given = "Rohan",
                      family = "Sadler",
                      role = "cre",
                      email = "rohan.sadler@ausvet.com.au"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lp.Rd’
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kasper",
                      family = "Welbers",
                      role = c("aut", "cre"),
                      email = "kasperwelbers@gmail.com"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Maintainer: ‘Johan Jordaan <djjordaan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johan",
                    family = "Jordaan",
                    role = c("aut", "cre"),
                    email = "djjordaan@gmail.com")
as necessary.
Maintainer: ‘Haydar Demirhan <haydar.demirhan@rmit.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haydar",
                    family = "Demirhan",
                    role = c("aut", "cre"),
                    email = "haydar.demirhan@rmit.edu.au")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_row.Rd’ ‘delete_selected_rows.Rd’ ‘for_each_col.Rd’ ‘redo.Rd’
    ‘set_calculation.Rd’ ‘set_column_defaults.Rd’ ‘set_editor.Rd’
    ‘set_formatter_color.Rd’ ‘set_formatter_datetime.Rd’
    ‘set_formatter_html.Rd’ ‘set_formatter_image.Rd’
    ‘set_formatter_link.Rd’ ‘set_formatter_money.Rd’
    ‘set_formatter_plaintext.Rd’ ‘set_formatter_progress.Rd’
    ‘set_formatter_star.Rd’ ‘set_formatter_textarea.Rd’
    ‘set_formatter_tick_cross.Rd’ ‘set_formatter_toggle_switch.Rd’
    ‘set_formatter_traffic_light.Rd’ ‘set_header_filter.Rd’
    ‘set_multi_column_header.Rd’ ‘set_options_group_by.Rd’
    ‘set_options_pagination.Rd’ ‘set_tooltip.Rd’ ‘tabulatorContext.Rd’
    ‘titanic.Rd’ ‘trigger_download.Rd’ ‘trigger_get_data.Rd’
    ‘trigger_get_sheet_data.Rd’ ‘undo.Rd’
Maintainer: ‘Miron B. Kursa <M.Kursa@icm.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Miron", "B."),
                    family = "Kursa",
                    role = c("aut", "cre"),
                    email = "m.kursa@icm.edu.pl")
as necessary.
Maintainer: ‘David Zarruk Valencia <davidzarruk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Zarruk", "Valencia", "&", "Rodrigo", "Azuero"),
                      family = "Melo",
                      role = "aut"),
               person(given = c("David", "Zarruk"),
                      family = "Valencia",
                      role = "cre",
                      email = "davidzarruk@gmail.com"))
as necessary.
Maintainer: ‘John Ruscio <ruscio@tcnj.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Ruscio",
                      role = c("aut", "cre"),
                      email = "ruscio@tcnj.edu"),
               person(given = "Shirley",
                      family = "Wang",
                      role = "aut",
                      email = "shirleywang@g.harvard.edu"))
as necessary.
Maintainer: ‘Mateu Menendez-Serra <mateu.menendez@ceab.csic.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mateu",
                      family = "Menendez-Serra",
                      role = c("aut", "cre"),
                      email = "mateu.menendez@ceab.csic.es"),
               person(given = c("Vicente", "J."),
                      family = "Ontiveros",
                      role = "aut"),
               person(given = c("Emilio", "O."),
                      family = "Casamayor",
                      role = "aut"),
               person(given = "David",
                      family = "Alonso",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘RTCC.Rd’:
    https://doi.org/10.1038/s41396-019-0454-4
checkRd: (-1) LBA-race.Rd:157: Lost braces
   157 |   corresponding (and not first) accumulator winning see /code{/link{LBA}}.
       |                                                              ^
checkRd: (-1) LBA-race.Rd:157: Lost braces
   157 |   corresponding (and not first) accumulator winning see /code{/link{LBA}}.
       |                                                                    ^
Maintainer: ‘Claas-Thido Pfaff <claas-thido.pfaff@idiv-biodiversity.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Claas-Thido",
                    family = "Pfaff",
                    role = c("aut", "cre"),
                    email = "claas-thido.pfaff@idiv-biodiversity.de")
as necessary.
Maintainer: ‘Jake Anderson <ajakef@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jake",
                    family = "Anderson",
                    role = c("aut", "cre"),
                    email = "ajakef@gmail.com")
as necessary.
Maintainer: ‘Loren Collingwood <loren.collingwood@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Timothy", "P."),
                      family = "Jurka",
                      role = "aut"),
               person(given = "Loren",
                      family = "Collingwood",
                      role = c("aut", "cre"),
                      email = "loren.collingwood@gmail.com"),
               person(given = c("Amber", "E."),
                      family = "Boydstun",
                      role = "aut"),
               person(given = "Emiliano",
                      family = "Grossman",
                      role = "aut"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Maintainer: ‘Lingxiao Li <lilingxiao@mail.sdu.edu.cn>’

The Description field contains
  discussed in Barigozzi et al. (2022) <arXiv:2206.09800>, and Barigozzi
  et al. (2023) <arXiv:2303.18163>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘test_addPageBreak.doc’ ‘test_addPlot.doc’ ‘test_addSessionInfo.doc’
  ‘test_addTable.doc’
Found the following significant warnings:
  Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘RTIGER’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RTIGER.Rcheck/00install.out’ for details.
Maintainer: ‘Tomas Okal <tomas.okal@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tomas",
                    family = "Okal",
                    role = c("aut", "cre"),
                    email = "tomas.okal@gmail.com")
as necessary.
Maintainer: ‘Paul Saary <rtk@paulsaary.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Saary",
                      role = c("aut", "cre"),
                      email = "rtk@paulsaary.de"),
               person(given = "Falk",
                      family = "Hildebrand",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘str_rtl.Rd’
checkRd: (-1) rt_GET.Rd:13: Lost braces
    13 | code{\link[httr]{GET}} (\code{TRUE}) or not (\code{FALSE})}
       |     ^
checkRd: (-1) rt_POST.Rd:13: Lost braces
    13 | code{\link[httr]{POST}} (\code{TRUE}) or not (\code{FALSE})}
       |     ^
Maintainer: ‘Avi Blinder <aviblinder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Avi",
                    family = "Blinder",
                    role = c("aut", "cre"),
                    email = "aviblinder@gmail.com")
as necessary.
Maintainer: ‘Houjie Wang <wanghoujie6688@gmail.com>’

The Description field contains
  Wang, H. & Yoshida, R. (2020) <arXiv:2003.00677>. Details about
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alexandre Maurel <alexandre.maurel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandre",
                    family = "Maurel",
                    role = c("aut", "cre"),
                    email = "alexandre.maurel@gmail.com")
as necessary.

The Description field contains
  (https://github.com/tercen/TSON).
Please enclose URLs in angle brackets (<...>).
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Colors.Rd: xts
  rtsplot.Rd: xts
  rtsplot.candle.Rd: xts
  rtsplot.fake.stock.data.Rd: xts
  rtsplot.hl.Rd: xts
  rtsplot.lines.Rd: xts
  rtsplot.matplot.Rd: xts
  rtsplot.ohlc.Rd: xts
  rtsplot.polygon.Rd: xts
  rtsplot.scale.volume.Rd: xts
  rtsplot.text.Rd: xts
  rtsplot.volume.Rd: xts
  rtsplot.x.highlight.Rd: xts
  rtsplot2Y.Rd: xts
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Babak Naimi <naimi.b@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babak",
                    family = "Naimi",
                    role = c("aut", "cre"),
                    email = "naimi.b@gmail.com")
as necessary.
checkRd: (-1) rts.Rd:32: Lost braces
    32 | If a name of a raster time series file is provided for the \code{x} argument, it acts the same as code{\link[rts]{read.rts}}.
       |                                                                                                       ^
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Park and Wang (2018)<arXiv:1807.02215>. This work was partially
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Kun Ren <ken@renkun.me>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kun",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "ken@renkun.me")
as necessary.
Maintainer: ‘Bryan Jenks <bryanjenks@protonmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/tallguyjenks/runes
which should likely be
  https://github.com/tallguyjenks/runes/issues
instead.
Author field differs from that derived from Authors@R
  Author:    ‘Frédéric Gosselin [cre, aut] (<https://orcid.org/0000-0003-3737-106X>, INRAE), Institut national de recherche pour l‘agriculture, l’alimentation et l'environnement [cph] (INRAE)’
  Authors@R: ‘Frédéric Gosselin [cre, aut] (ORCID: <https://orcid.org/0000-0003-3737-106X>, institution: INRAE), Institut national de recherche pour l‘agriculture, l’alimentation et l'environnement [cph] (INRAE)’
'library' or 'require' calls in package code:
  ‘nimble’ ‘nimbleAPT’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Maintainer: ‘Mauricio Santelices <m.santelicesa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mauricio",
                    family = "Santelices",
                    role = c("aut", "cre"),
                    email = "m.santelicesa@gmail.com")
as necessary.
Maintainer: ‘Johann Gagnon-Bartsch <johanngb@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johann",
                    family = "Gagnon-Bartsch",
                    role = c("aut", "cre"),
                    email = "johanngb@umich.edu")
as necessary.
checkRd: (-1) RUVIII.Rd:51: Lost braces
    51 | If code{return.info} is \code{TRUE}, a list is returned that contains:
       |        ^
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                ^
checkRd: (-1) Valpha.Rd:15: Lost braces; missing escapes or markup?
    15 |   \item{V}{a numeric vector with (i,j) entry: V[i,j] = P(theta_{i} >= theta[alpha_{j}]|data) }
       |                                                                                   ^
Error(s) in re-building vignettes:
  ...
--- re-building ‘RVA.Rmd’ using rmarkdown

Quitting from RVA.Rmd:179-181 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S7::prop(x, "meta")[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─knitr::kable(head(cutoff.result.list[[1]]))
 2. ├─utils::head(cutoff.result.list[[1]])
 3. ├─cutoff.result.list[[1]]
 4. └─ggplot2 (local) `[[.ggplot2::gg`(cutoff.result.list, 1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RVA.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘RVA.Rmd’

SUMMARY: processing the following file failed:
  ‘RVA.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Etor Arza <etorarza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Etor",
                    family = "Arza",
                    role = c("aut", "cre"),
                    email = "etorarza@gmail.com")
as necessary.
Maintainer: ‘Wei Guo <wei.guo3@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "wei.guo3@nih.gov")
as necessary.
Maintainer: ‘Charles Determan Jr <cdetermanjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Determan Jr.",
                      role = "aut"),
               person(given = "Charles",
                      family = "Determan Jr",
                      role = "cre",
                      email = "cdetermanjr@gmail.com"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CRAN.R-project.org
    From: README.md

The BugReports field in DESCRIPTION has
  http://github.com/cdeterman/RViennaCL/issues/new
which should likely be
  http://github.com/cdeterman/RViennaCL/issues/new/issues
instead.
Maintainer: ‘Alun Thomas <Alun.Thomas@utah.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alun",
                    family = "Thomas",
                    role = c("aut", "cre"),
                    email = "alun.thomas@utah.edu")
as necessary.
Maintainer: ‘Alexey Seleznev <selesnow@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Seleznev",
                    role = c("aut", "cre"),
                    email = "selesnow@gmail.com")
as necessary.
Maintainer: ‘Parker Holzer <parker.holzer@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Parker",
                    family = "Holzer",
                    role = c("aut", "cre"),
                    email = "parker.holzer@yale.edu")
as necessary.

The Description field contains
  <arXiv:2005.14083>, which is a particular application of the radial
  al. (2020) <arXiv:2005.14083> when publishing results that use this
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Navarro Fabien <fnavarro@math.cnrs.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "F.",
                      family = "Navarro",
                      role = "aut"),
               person(given = "C.",
                      family = "Chesneau",
                      role = "aut"),
               person(given = "Navarro",
                      family = "Fabien",
                      role = "cre",
                      email = "fnavarro@math.cnrs.fr"))
as necessary.
checkRd: (-1) HardThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
checkRd: (-1) SoftThresh.Rd:15: Lost braces; missing escapes or markup?
    15 | \code{x} filtered result (y 1_{|y|>t}).
       |                               ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘wcvp_checklist.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wcvp_summary_gt.Rd: gt
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alan Butler <rabutler@usbr.gov>’

Found the following (possibly) invalid URLs:
  URL: http://www.riverware.org/HelpSystem/index.html#page/SolutionApproaches/Solutions_MRM.4.5.html#ww477402
    From: man/read_rw_csv.Rd
    Message: Invalid URL: '#' not allowed in fragment
Specified C++11: please drop specification unless essential
Maintainer: ‘Mafalda Sá Ferreira <msm.ferreira@campus.fct.unl.pt>’

The Description field contains
  <arXiv:2112.07508v3> and Oliveira et al. (2021) <arXiv:2102.05373v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Brad Cable <brad@bcable.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brad",
                    family = "Cable",
                    role = c("aut", "cre"),
                    email = "brad@bcable.net")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Andy South <southandy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andy",
                    family = "South",
                    role = c("aut", "cre"),
                    email = "southandy@gmail.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Felipe Souza <lipecaso@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) wtss_to_ts.Rd:31: Lost braces; missing escapes or markup?
    31 | This period can be either {"month", "week", "day"}, 
       |                           ^
checkRd: (-1) wtss_to_ts.Rd:32: Lost braces; missing escapes or markup?
    32 | {"months", "weeks", "days"} or
       | ^
checkRd: (-1) wtss_to_ts.Rd:33: Lost braces; missing escapes or markup?
    33 | {12, 52, 365}. This function creates a new time series with the required 
       | ^
'::' or ':::' imports not declared from:
  ‘changepoint’ ‘strucchange’
'library' or 'require' calls not declared from:
  ‘changepoint’ ‘strucchange’
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [4s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(Rwtss)
  Rwtss - R interface to Web Time Series Service.
  Loaded Rwtss v0.9.2.
          See ?Rwtss for help, citation("Rwtss") for use in publication.
          See demo(package = "Rwtss") for examples.
  > 
  > test_check("Rwtss")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 57 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_wtss.R:60:9'): Plot ──────────────────────────────────────────
  unname(summary(g)[1, 2]) == "gg" is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  Backtrace:
      ▆
   1. ├─vcr::use_cassette(...) at test_wtss.R:53:5
   2. │ └─base::withCallingHandlers(...)
   3. └─testthat::expect_true(unname(summary(g)[1, 2]) == "gg") at test_wtss.R:60:9
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 57 ]
  Error: Test failures
  In addition: Warning message:
  `check_cassette_names()` was deprecated in vcr 2.0.0. 
  Execution halted
Maintainer: ‘Eric Hare <eric@omnianalytics.io>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Shum",
                      role = "aut",
                      email = "alex@ALShum.com"),
               person(given = "Eric",
                      family = "Hare",
                      role = "cre",
                      email = "eric@omnianalytics.io"))
as necessary.
Maintainer: ‘Bob Obenchain <wizbob@att.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bob",
                    family = "Obenchain",
                    role = c("aut", "cre"),
                    email = "wizbob@att.net")
as necessary.
checkRd: (-1) plot.eff.ridge.Rd:6: Lost braces
     6 |  emph{Single Interior Knot} at the MSE Optimal m-Extent of Shrinkage. The
       |      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  eff.biv.Rd: ellipse.lm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++14: please drop specification unless essential
Maintainer: ‘Mikkel Meyer Andersen <mikl@math.aau.dk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++14: please drop specification unless essential
Maintainer: ‘Mukul Chaware <mukul.chaware13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mukul",
                    family = "Chaware",
                    role = c("aut", "cre"),
                    email = "mukul.chaware13@gmail.com")
as necessary.

The Description field contains
  'Yandex Translate' (https://translate.yandex.com/) is a statistical
  https://tech.yandex.com/translate/doc/dg/concepts/About-docpage/ .
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Tom August <tomaug@ceh.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "August",
                    role = c("aut", "cre"),
                    email = "tomaug@ceh.ac.uk")
as necessary.
Maintainer: ‘Joris Bierkens <j.bierkens@vu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joris",
                    family = "Bierkens",
                    role = c("aut", "cre"),
                    email = "j.bierkens@vu.nl")
as necessary.

The Description field contains
  <arXiv:1607.03188> applied and Bouncy Particle Sampler
  <arXiv:1510.02451> for a Gaussian target and Student distribution.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ZigZagLogistic.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{dataX}{Design matrix containing observations of the independent variables x. The i-th row represents the i-th observation with components x_{i,1}, ..., x_{i,d}.}
       |                                                                                                                                                   ^
checkRd: (-1) ZigZagLogistic.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{dataX}{Design matrix containing observations of the independent variables x. The i-th row represents the i-th observation with components x_{i,1}, ..., x_{i,d}.}
       |                                                                                                                                                                 ^
checkRd: (-1) ZigZagLogistic.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{dataY}{Vector of length n containing {0, 1}-valued observations of the dependent variable y.}
       |                                            ^
checkRd: (-1) ciReg.Rd:10: Lost braces
    10 | \item{fit}{an object of class{lm}, i.e. the output from \code{\link{lm}}.}
       |                              ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘s3_check_for_file.R’ ‘s3_file_size.R’ ‘s3_get.Rd’ ‘s3_get_files.R’
    ‘s3_parse_uri.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fit_density_ratio.R’ ‘fit_plug_and_play.R’
File ‘S7/libs/S7.so’:
  Found non-API calls to R: ‘FORMALS’, ‘Rf_allocSExp’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Zhongyang Zhang <zhongyang.zhang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhongyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhongyang.zhang@mssm.edu"),
               person(given = "Ke",
                      family = "Hao",
                      role = "aut"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "ctb"))
as necessary.
Maintainer: ‘Jakub Nowosad <nowosad.jakub@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhong Guan <zguan@iusb.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhong",
                    family = "Guan",
                    role = c("aut", "cre"),
                    email = "zguan@iusb.edu")
as necessary.
checkRd: (-1) BootsChapt.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) SemiparChangePoint.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) schapt.Rd:44: Escaped LaTeX specials: \&
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rampal", "S.", "Etienne", "&", "Bart"),
                      family = "Haegeman",
                      role = "aut"),
               person(given = c("Rampal", "S."),
                      family = "Etienne",
                      role = "cre",
                      email = "r.s.etienne@rug.nl"))
as necessary.
Maintainer: ‘Sheerin Dahwan Aziz <sheerindahwan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"),
               person(given = c("Sheerin", "Dahwan"),
                      family = "Aziz",
                      role = c("aut", "cre"),
                      email = "sheerindahwan@gmail.com"))
as necessary.
Maintainer: ‘Rizki Ananda Fauziah <rizkiananda133@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rizki", "Ananda"),
                      family = "Fauziah",
                      role = c("aut", "cre"),
                      email = "rizkiananda133@gmail.com"),
               person(given = c("Ika", "Yuni"),
                      family = "Wulansari",
                      role = "aut"))
as necessary.
Maintainer: ‘Velia Tri Marliana <221810642@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Velia", "Tri"),
                      family = "Marliana",
                      role = c("aut", "cre"),
                      email = "221810642@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Maintainer: ‘Rizqina Rahmati <221810583@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rizqina",
                      family = "Rahmati",
                      role = c("aut", "cre"),
                      email = "221810583@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Maintainer: ‘Wicak Surya Hasani <221710052@stis.ac.id>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Wicak", "Surya"),
                      family = "Hasani",
                      role = c("aut", "cre"),
                      email = "221710052@stis.ac.id"),
               person(given = "Azka",
                      family = "Ubaidillah",
                      role = "aut"))
as necessary.
Maintainer: ‘Yolanda Marhuenda <y.marhuenda@umh.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isabel",
                      family = "Molina",
                      role = "aut"),
               person(given = "Yolanda",
                      family = "Marhuenda",
                      role = c("aut", "cre"),
                      email = "y.marhuenda@umh.es"))
as necessary.
Maintainer: ‘Sebastian Warnholz <wahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastian",
                    family = "Warnholz",
                    role = c("aut", "cre"),
                    email = "wahani@gmail.com")
as necessary.
checkRd: (-1) sim_setup_preconfigured.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_setup_preconfigured.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_setup_preconfigured.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_setup_preconfigured.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_setup_preconfigured.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_setup_preconfigured.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_setup_preconfigured.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_setup_preconfigured.Rd:31: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sim.Rd: parallelStart, parallelLibrary, parallelExport
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Asun Lubiano <lubiano@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wolfgang",
                      family = "Trutschnig",
                      role = "aut",
                      email = "wolfgang@trutschnig.net"),
               person(given = "Asun",
                      family = "Lubiano",
                      role = c("aut", "cre"),
                      email = "lubiano@uniovi.es"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Alexander Ly <a.ly@jasp-stats.org>’

The Description field contains
  (2019) "Safe Testing" <arXiv:1906.07801>, for details on safe logrank
  Horizon" <arXiv:2011.06931v3> and Turner, Ly and Grunwald (2021) "Safe
  beyond" <arXiv:2106.02693> for details on safe contingency table tests.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Santos J. González-Rojí <santosjose.gonzalez@ehu.eus>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Dragonera.Rd’:
    https://doi.org/10.1016/j.apenergy.2017.09.030
  File ‘EstacaDeBares.Rd’:
    https://doi.org/10.1016/j.oceaneng.2015.05.038
    https://doi.org/10.1109/JOE.2016.2529400
  File ‘SailoR-package.Rd’:
    https://doi.org/10.5194/gmd-13-3221-2020
  File ‘WRF.Rd’:
    https://doi.org/10.1002/2017JD027511
    https://doi.org/10.1007/s00382-019-04673-9
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘class-2-differential.r’ ‘dual-apply.r’ ‘dual-math.r’
    ‘dual-summary.r’ ‘dual-test-near-equality.r’ ‘dual.r’ ‘dualFun1.Rd’
Maintainer: ‘Yuwen Gu <yuwen.gu@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuwen",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "yuwen.gu@uconn.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut",
                      email = "zouxx019@umn.edu"))
as necessary.
Maintainer: ‘Scott Vander Wiel <scottv@lanl.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hannah",
                      family = "Director",
                      role = "aut"),
               person(given = c("Scott", "Vander"),
                      family = "Wiel",
                      role = c("aut", "cre"),
                      email = "scottv@lanl.gov"),
               person(given = "James",
                      family = "Gattiker",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Rix <alexrix@umich.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘approxdist.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘nonlogistic.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘obsloglik.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘obsloglikEM.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
  File ‘sensitivity.Rd’:
    https://doi.org/10.1101/2019.12.26.19015859
Maintainer: ‘Norbert Krautenbacher <norbert.krautenbacher@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norbert",
                      family = "Krautenbacher",
                      role = c("aut", "cre"),
                      email = "norbert.krautenbacher@tum.de"),
               person(given = "Kevin",
                      family = "Strauss",
                      role = "aut"),
               person(given = "Maximilian",
                      family = "Mandl",
                      role = "aut"),
               person(given = "Christiane",
                      family = "Fuchs",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael Baldassaro <mbaldassaro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Baldassaro",
                    role = c("aut", "cre"),
                    email = "mbaldassaro@gmail.com")
as necessary.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) binaryChoice.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Hongchao Qi <hcqi1992@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hongchao",
                      family = "Qi",
                      role = c("aut", "cre"),
                      email = "hcqi1992@gmail.com"),
               person(given = "Fang",
                      family = "Zhu",
                      role = "aut"))
as necessary.
Maintainer: ‘Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hugo", "Andres", "Gutierrez"),
                    family = "Rojas",
                    role = c("aut", "cre"),
                    email = "hagutierrezro@gmail.com")
as necessary.
Maintainer: ‘William Wheeler <WheelerB@imsweb.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mitchell", "H."),
                      family = "Gail",
                      role = "aut"),
               person(given = "William",
                      family = "Wheeler",
                      role = "cre",
                      email = "WheelerB@imsweb.com"))
as necessary.
Maintainer: ‘Ralph Scherer <shearer.ra76@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ralph",
                    family = "Scherer",
                    role = c("aut", "cre"),
                    email = "shearer.ra76@gmail.com")
as necessary.
Maintainer: ‘Jonathan Lisic <jlisic@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Lisic",
                      role = c("aut", "cre"),
                      email = "jlisic@gmail.com"),
               person(given = "Anton",
                      family = "Grafström",
                      role = "aut"))
as necessary.
Maintainer: ‘Juliane Manitz <r@manitz.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juliane",
                      family = "Manitz",
                      role = c("aut", "cre"),
                      email = "r@manitz.org"),
               person(given = "Mark",
                      family = "Hempelmann",
                      role = "ctb"),
               person(given = "Goeran",
                      family = "Kauermann",
                      role = "ctb"),
               person(given = "Helmut",
                      family = "Kuechenhoff",
                      role = "aut"),
               person(given = "Shuai",
                      family = "Shao",
                      role = "ctb"),
               person(given = "Cornelia",
                      family = "Oberhauser",
                      role = "ctb"),
               person(given = "Nina",
                      family = "Westerheide",
                      role = "ctb"),
               person(given = "Manuel",
                      family = "Wiesenfarth",
                      role = "ctb"))
as necessary.
Maintainer: ‘Diana Trutschel <Diana.Trutschel@dzne.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Diana",
                      family = "Trutschel",
                      role = c("aut", "cre"),
                      email = "diana.trutschel@dzne.de"),
               person(given = "Hendrik",
                      family = "Treutler",
                      role = "aut"))
as necessary.
Maintainer: ‘Giulio Barcaroli <gbarcaroli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giulio",
                      family = "Barcaroli",
                      role = c("aut", "cre"),
                      email = "gbarcaroli@gmail.com"),
               person(given = "Marco",
                      family = "Ballin",
                      role = "aut"),
               person(given = "Hanjo",
                      family = "Odendaal",
                      role = "aut"),
               person(given = "Daniela",
                      family = "Pagliuca",
                      role = "aut"),
               person(given = "Egon",
                      family = "Willighagen",
                      role = "aut"),
               person(given = "Diego",
                      family = "Zardetto",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  'genalg' package. M.Ballin, G.Barcaroli (2020) <arXiv:2004.09366> "R
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Emilio Lopez Escobar <emilio@quantos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emilio", "Lopez"),
                      family = "Escobar",
                      role = c("aut", "cre", "cph"),
                      email = "emilio@quantos.mx"),
               person(given = c("Ernesto", "Barrios"),
                      family = "Zamudio",
                      role = "ctb",
                      email = "ebarrios@itam.mx"),
               person(given = c("Juan", "Francisco", "Munoz"),
                      family = "Rosas",
                      role = "ctb",
                      email = "jfmunoz@go.ugr.es"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Haoming Jiang <jianghm.ustc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haoming",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "jianghm.ustc@gmail.com"),
               person(given = "Yukun",
                      family = "Ma",
                      role = "aut"),
               person(given = "Han",
                      family = "Liu",
                      role = "aut"),
               person(given = "Kathryn",
                      family = "Roeder",
                      role = "aut"),
               person(given = "Xingguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Tuo",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "R.",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = c("Michael", "J."),
                      family = "Seo",
                      role = "aut"),
               person(given = "G.",
                      family = "Chu",
                      role = "aut"),
               person(given = "Balasubramanian",
                      family = "Narasimhan",
                      role = "aut"),
               person(given = "Jun",
                      family = "Li",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "cre",
                      email = "tibs@stanford.edu"))
as necessary.
checkRd: (-1) SAM.Rd:67: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:59: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:84: Escaped LaTeX specials: \# \$
checkRd: (-1) samr.Rd:88: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:92: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) samr.assess.samplesize.plot.Rd:12: Escaped LaTeX specials: \#
Maintainer: ‘Jiayi Ji <Jiayi.Ji@mountsinai.org>’

The Description field contains
  cancer data <arXiv:2012.06093>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Florian Lecocq <florian.lecocq@outlook.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘samurais-package.Rd’:
    https://doi.org/10.1002/widm.1298
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/samurais.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) ModelHMMR-class.Rd:37: Lost braces; missing escapes or markup?
    37 |         class {StatHMMR}).
       |               ^
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"),
               person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"))
as necessary.
Maintainer: ‘Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "Myles"),
                    family = "McDonnell",
                    role = c("aut", "cre"),
                    email = "robertmylesmcdonnell@gmail.com")
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "January",
                      family = "Weiner",
                      role = "aut"))
as necessary.
Maintainer: ‘Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Atsushi",
                    family = "Kawaguchi",
                    role = c("aut", "cre"),
                    email = "kawa_a24@yahoo.co.jp")
as necessary.
Maintainer: ‘Murtaza Nasir <mail@murtaza.cc>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arnaud Wolfer <adwolfer@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/adwolfer/santaR/issues/new
which should likely be
  https://github.com/adwolfer/santaR/issues/new/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cmc_psat.Rd’ ‘h-fun.R’ ‘mc-test.R’ ‘tshift.R’
Maintainer: ‘Masami Saga <msaga@mtb.biglobe.ne.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("The", "Institute", "of", "Statistical"),
                      family = "Mathematics",
                      role = "aut"),
               person(given = "Masami",
                      family = "Saga",
                      role = "cre",
                      email = "msaga@mtb.biglobe.ne.jp"))
as necessary.
Maintainer: ‘Stuart K. Grange <stuart.grange@york.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The Description field contains
  method (Centofanti et al. (2021) <arXiv:2103.15224>) that aims to
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sasfunclust.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Steven Walker <steve.walker@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by"),
                      family = "Littell",
                      role = "aut"),
               person(family = "Milliken",
                      role = "aut"),
               person(family = "Stroup",
                      role = "aut"),
               person(family = "Wolfinger",
                      role = "aut"),
               person(given = c("modifications", "by", "Douglas"),
                      family = "Bates",
                      role = "aut",
                      email = "bates@stat.wisc.edu"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut"),
               person(given = "Ben",
                      family = "Bolker",
                      role = "aut"),
               person(given = "Steven",
                      family = "Walker",
                      role = c("aut", "cre"),
                      email = "steve.walker@utoronto.ca"))
as necessary.
checkRd: (-1) gen.ds.Rd:43-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:50-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:64-65: Lost braces
    64 |    \item{the dependence parameter \code{dep} or the vector of dependence parameters \code{dep}. When missing, these coefficients are obtained from independent standard uniform sampling.
       |         ^
checkRd: (-1) gen.ds.Rd:66: Lost braces
    66 |    \item{the list \code{asy} of asymmetric weights \eqn{\beta_{i,b}} for \eqn{b \in B}  and \eqn{i \in b}. When missing, these coefficients are obtained from independent standard uniform sampling followed by renormalization in order to satisfy the sum-to-one constraints.}
       |         ^
Maintainer: ‘Héctor Villalobos <hvillalo@ipn.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Héctor",
                      family = "Villalobos",
                      role = c("aut", "cre"),
                      email = "hvillalo@ipn.mx"),
               person(given = "Eduardo",
                      family = "González-Rodríguez",
                      role = "aut",
                      email = "egonzale@cicese.mx"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  crop.Rd: getpoly
  isolines.Rd: convCP, PolySet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_SpatRaster.Rd’ ‘clip_bands.Rd’ ‘get_band_names.Rd’
    ‘get_spatial_resolution.Rd’ ‘get_spectral_band_names.Rd’
    ‘merge_tiles.Rd’ ‘save_by_resolution.Rd’ ‘select_bands.Rd’
Maintainer: ‘Mo Huang <mohuangx@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SAVER-package.Rd’:
    https://doi.org/10.1038/s41592-018-0033-z
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tiago Santos <teixeiradossantos@tugraz.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) OTC.Rd:42: Lost braces; missing escapes or markup?
    42 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) OTC.Rd:83: Lost braces; missing escapes or markup?
    83 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) OTHist.Rd:29: Lost braces; missing escapes or markup?
    29 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) dOTC.Rd:72: Lost braces; missing escapes or markup?
    72 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Shift.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Viktoriya Krakovna <vkrakovna@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Viktoriya",
                    family = "Krakovna",
                    role = c("aut", "cre"),
                    email = "vkrakovna@gmail.com")
as necessary.

The Description field contains
  (2015), <arXiv:1506.02371>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) setData.ReducedRankRegressions.Rd:14-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setData.ReducedRankRegressions.Rd:17-18: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Meiyue Wang <mwang024@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Meiyue",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "mwang024@ucr.edu"),
               person(given = "Shizhong",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Arash A. Amini <amini.aa@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Arash", "A."),
                    family = "Amini",
                    role = c("aut", "cre"),
                    email = "amini.aa@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘sbmSDP-package.Rd’:
    \keyword{ 
      community detection
      stochastic block mo [TRUNCATED]
Maintainer: ‘Matthew Ludkin <m.ludkin1@lancaster.ac.uk>’

The Description field contains
  <doi:10.1080/10618600.2000.10474879>; Ludkin (2019) <arXiv:1909.09421>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘drawblock.dp.Rd’:
    http://doi.org/10.17635/lancaster/thesis/296
  File ‘sampler.dp.Rd’:
    http://doi.org/10.17635/lancaster/thesis/296
  File ‘sampler.rj.Rd’:
    http://doi.org/10.17635/lancaster/thesis/296
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Updated help pages with examples
    Updated conjugate model sampler
Maintainer: ‘Valerio Gherardi <vgherard@sissa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Valerio",
                    family = "Gherardi",
                    role = c("aut", "cre"),
                    email = "vgherard@sissa.it")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Frank D. Mann <frankdmann@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Frank", "D."),
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "frankdmann@gmail.com")
as necessary.
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lee",
                      family = "Wilkinson",
                      role = "aut",
                      email = "leland.wilkinson@gmail.com"),
               person(given = "Anushka",
                      family = "Anand",
                      role = "aut"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "cre",
                      email = "simon.urbanek@r-project.org"))
as necessary.
License stub is invalid DCF.
Specified C++11: please drop specification unless essential
Maintainer: ‘Niloy Biswas <niloy_biswas@g.harvard.edu>’

The Description field contains
  <arXiv:2204.01668>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (ORCID: <https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Maintainer: ‘Tingni Sun <tingni@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tingni",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "tingni@wharton.upenn.edu")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/scanstatistics.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Xudong Han <hanxd1217@163.com>’

The Description field contains
  Thomas N. Kipf (2017) <arXiv:1609.02907v4>) to construct the gene-cell
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) get.events.Rd:51: Lost braces
    51 |   code{\link[deSolve]{events}}
       |       ^
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Valentin",
                      family = "Rousson",
                      role = "aut",
                      email = "rousson@ifspm.unizh.ch"),
               person(given = "Martin",
                      family = "Maechler",
                      role = c("aut", "cre"),
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Maintainer: ‘Yining Chen <y.chen101@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yining",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "y.chen101@lse.ac.uk"),
               person(given = "Richard",
                      family = "Samworth",
                      role = "aut"))
as necessary.
Maintainer: ‘Ravi Selker <selker.ravi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ravi",
                    family = "Selker",
                    role = c("aut", "cre"),
                    email = "selker.ravi@gmail.com")
as necessary.
checkRd: (-1) scatterD3.Rd:209: Lost braces; missing escapes or markup?
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       | ^
checkRd: (-1) scatterD3.Rd:209: Lost braces
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       |                                              ^
Maintainer: ‘Uwe Ligges <ligges@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Uwe",
                      family = "Ligges",
                      role = c("aut", "cre"),
                      email = "ligges@statistik.tu-dortmund.de"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "aut"),
               person(given = "Sarah",
                      family = "Schnackenberg",
                      role = "aut"))
as necessary.
Maintainer: ‘Amit Frishberg <amfrishberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amit",
                      family = "Frishberg",
                      role = c("aut", "cre"),
                      email = "amfrishberg@gmail.com"),
               person(given = "Naama",
                      family = "Peshes-Yaloz",
                      role = "aut"),
               person(given = "Irit",
                      family = "Gat-Viks",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Blair Drummond <blair.robert.drummond@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Blair",
                      family = "Drummomd",
                      role = "aut"),
               person(given = "Mathieu",
                      family = "Dextraze",
                      role = "ctb"),
               person(given = "Blair",
                      family = "Drummond",
                      role = "cre",
                      email = "blair.robert.drummond@gmail.com"))
as necessary.
Maintainer: ‘Xin Shao<xin_shao@zju.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xin",
                    family = "Shao",
                    role = c("aut", "cre"),
                    email = "xin_shao@zju.edu.cn")
as necessary.
Maintainer: ‘Alexander Marx <amarx@mpi-inf.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Marx",
                    role = c("aut", "cre"),
                    email = "amarx@mpi-inf.mpg.de")
as necessary.
Maintainer: ‘Alicja Wolny-Dominiak<woali@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Adamic",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "woali@ue.katowice.pl"))
as necessary.
Maintainer: ‘"Yonas Ghebremichael Weldeselassie" <yonas.weldeselassie@open.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yonas", "Ghebremichael"),
                      family = "Weldeselassie",
                      role = "aut"),
               person(given = "Heather",
                      family = "Whitaker",
                      role = "aut"),
               person(given = "Paddy",
                      family = "Farrington",
                      role = "aut"),
               person(given = c("\"Yonas", "Ghebremichael"),
                      family = "Weldeselassie\"",
                      role = "cre",
                      email = "yonas.weldeselassie@open.ac.uk"))
as necessary.
'library' or 'require' calls not declared from:
  ‘doSNOW’ ‘foreach’ ‘iterators’ ‘reshape’ ‘rlecuyer’ ‘snow’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nap.R’ ‘randomization_test.R’ ‘scdtb.R’
Maintainer: ‘Daisuke Murakami <dmuraka@ism.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daisuke",
                      family = "Murakami",
                      role = c("cre", "aut"),
                      email = "dmuraka@ism.ac.jp"),
               person(given = "Narumasa",
                      family = "Tsutsumida",
                      role = "ctb"),
               person(given = "Takahiro",
                      family = "Yoshida",
                      role = "ctb"),
               person(given = "Tomoki",
                      family = "Nakaya",
                      role = "ctb"),
               person(given = "Lu",
                      family = "Binbin",
                      role = "ctb"))
as necessary.

The Description field contains
  <arXiv:1905.00266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jeffrey A. Dahlke <jeff.dahlke.phd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jeffrey", "A."),
                    family = "Dahlke",
                    role = c("aut", "cre"),
                    email = "jeff.dahlke.phd@gmail.com")
as necessary.
Maintainer: ‘Stuart Baumann <Stuart@StuartBaumann.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stuart",
                      family = "Baumann",
                      role = c("aut", "cre"),
                      email = "stuart@stuartbaumann.com"),
               person(given = "Margaryta",
                      family = "Klymak",
                      role = "aut"))
as necessary.
Maintainer: ‘Nathan Taback <nathan.taback@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nathan",
                    family = "Taback",
                    role = c("aut", "cre"),
                    email = "nathan.taback@utoronto.ca")
as necessary.
Maintainer: ‘Ashraf Uddin <mdaakib18@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashraf",
                    family = "Uddin",
                    role = c("aut", "cre"),
                    email = "mdaakib18@gmail.com")
as necessary.
Maintainer: ‘Ze Zhang <Ze.Zhang@utsouthwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ze",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "ze.zhang@utsouthwestern.edu")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/scINSIGHT.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Manuel Morales <Manuel.A.Morales@williams.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Manuel",
                      family = "Morales",
                      role = c("aut", "cre"),
                      email = "mmorales@williams.edu"),
               person(given = c("with", "code", "developed", "by", "the", "R", "Development", "Core"),
                      family = "Team",
                      role = "aut"),
               person(given = c("with", "general", "advice", "from", "the", "R-help", "listserv"),
                      family = "community",
                      role = "aut"),
               person(given = c("especially", "Duncan"),
                      family = "Murdoch.",
                      role = "aut"))
as necessary.
Maintainer: ‘Obinna Obianom <idonshayo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Obinna",
                    family = "Obianom",
                    role = c("aut", "cre"),
                    email = "idonshayo@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/oobianom/sciRmdTheme
which should likely be
  https://github.com/oobianom/sciRmdTheme/issues
instead.
Maintainer: ‘Duc Tran <duct@nevada.unr.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tamal Kumar De <tamalkumar.de@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isis",
                      family = "Bulte",
                      role = "aut"),
               person(given = c("Tamal", "Kumar"),
                      family = "De",
                      role = c("aut", "cre"),
                      email = "tamalkumar.de@kuleuven.be"),
               person(given = "Patrick",
                      family = "Onghena",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
Maintainer: ‘Wenlong Ren <wenlongren@ntu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wenlong",
                    family = "Ren",
                    role = c("aut", "cre"),
                    email = "wenlongren@ntu.edu.cn")
as necessary.
Maintainer: ‘Shota Ochi <shotaochi1990@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ecgca102.Rd’:
    https://doi.org/10.13026/C2X30H
Maintainer: ‘Jaejoon Song <jjsong2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jaejoon",
                    family = "Song",
                    role = c("aut", "cre"),
                    email = "jjsong2@mdanderson.org")
as necessary.
Maintainer: ‘Ed Merkle <merklee@missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ed",
                    family = "Merkle",
                    role = c("aut", "cre"),
                    email = "merklee@missouri.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [ctb] (<https://orcid.org/0000-0002-7114-6248>, zouter)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [ctb] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’
checkRd: (-1) reduce_dimensionality.Rd:19: Lost braces
    19 | \item{ndim}{the maximum dimension of the space which the data are to be represented in; must be in {1, 2, \ldots, n-1}.}
       |                                                                                                    ^
checkRd: (-1) ti_scorpius.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{distance_method}{A character string indicating which correlationcoefficient (or covariance) is to be computed. One of "pearson", "spearman" (default), or "cosine". Domain: {spearman, pearson, cosine}. Default: spearman. Format: character.}
       |                                                                                                                                                                                   ^
checkRd: (-1) ti_scorpius.Rd:30: Lost braces; missing escapes or markup?
    30 | \item{smoother}{\code{principal_curve} parameter; choice of smoother. Domain: {smooth_spline, lowess, periodic_lowess}. Default: smooth_spline. Format: character.}
       |                                                                               ^
Maintainer: ‘Debsurya De <debsurya001@gmail.com>’

The Description field contains
  <arXiv:1909.04024> .
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chakkrit Tantithamthavorn <kla@chakkrit.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chakkrit",
                    family = "Tantithamthavorn",
                    role = c("aut", "cre"),
                    email = "kla@chakkrit.com")
as necessary.
Maintainer: ‘Daniela M. Witten <dwitten@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M."),
                      family = "Witten",
                      role = c("aut", "cre"),
                      email = "dwitten@uw.edu"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Marlene Marchena <marchenamarlene@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marlene",
                    family = "Marchena",
                    role = c("aut", "cre"),
                    email = "marchenamarlene@gmail.com")
as necessary.

The Description field contains
  <arXiv:1009.3977>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stefan Peidli <stefanpeidli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stefan",
                    family = "Peidli",
                    role = c("aut", "cre"),
                    email = "stefanpeidli@gmail.com")
as necessary.
Maintainer: ‘Julien Boelaert <jubo.stats@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julien",
                    family = "Boelaert",
                    role = c("aut", "cre"),
                    email = "jubo.stats@gmail.com")
as necessary.
Maintainer: ‘Qi Zhang <karlmzhang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Pengsheng",
                      family = "Ji",
                      role = "aut"),
               person(given = "Jiashun",
                      family = "Jin",
                      role = "aut"),
               person(given = "Qi",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "karlmzhang@gmail.com"))
as necessary.
Maintainer: ‘Elad Romanov <elad.romanov@gmail.com>’

The Description field contains
  appear). <arXiv:2009.12297>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Holger Schwender <holger.schw@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Holger",
                      family = "Schwender",
                      role = c("aut", "cre"),
                      email = "holger.schw@gmx.de"),
               person(given = c("with", "a", "contribution", "of", "Arno"),
                      family = "Fritsch",
                      role = "aut"))
as necessary.
checkRd: (-1) simulateSNPs.Rd:46: Escaped LaTeX specials: \& \& \&
checkRd: (-1) simulateSNPs.Rd:80: Escaped LaTeX specials: \& \& \&
Maintainer: ‘Sagie Gur-Ari <sagiegurari@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: docs/api.md
    From: README.md
  URI: .github/CONTRIBUTING.md
    From: README.md
checkRd: (-1) scriptloc.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Get location of script in a fashion analagous to ${BASH_SOURCE[0]}}
       |                                                          ^
Maintainer: ‘Raphaël Bonnet <raphael.bonnet@univ-cotedazur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Raphael",
                      family = "Bonnet",
                      role = c("aut", "cre")),
               person(given = "Marion",
                      family = "Guernoté",
                      role = "ctb"),
               person(given = "Terry",
                      family = "Gouin",
                      role = "ctb"),
               person(given = "Maxime",
                      family = "Laurens",
                      role = "ctb"),
               person(given = "Thibault",
                      family = "Meekel",
                      role = "ctb"),
               person(given = "Jean-François",
                      family = "Peyron",
                      role = c("aut", "ths")),
               person(given = "Raphaël",
                      family = "Bonnet",
                      role = "cre",
                      email = "raphael.bonnet@univ-cotedazur.fr"))
as necessary.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Qian Yang <bioqianyang@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qian",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "bioqianyang@163.com")
as necessary.
Found the following files/directories:
  ‘untitled_consensus_cluster’
Maintainer: ‘Conor Neilson <condwanaland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conor",
                    family = "Neilson",
                    role = c("aut", "cre"),
                    email = "condwanaland@gmail.com")
as necessary.
Maintainer: ‘Tamal Kumar De <tamalkumar.de@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isis",
                      family = "Bulte",
                      role = "aut"),
               person(given = c("Tamal", "Kumar"),
                      family = "De",
                      role = c("aut", "cre"),
                      email = "tamalkumar.de@kuleuven.be"),
               person(given = "Patrick",
                      family = "Onghena",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Osorio <dcosorioh@utexas.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(scUtils)
  > 
  > test_check("scUtils")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plots.R:59:3'): all kinds of colnames are allowed ────────────
  p$labels not equal to list(y = "Dim2", x = "Dim1", colour = "expression").
  Attributes: < names for target but not for current >
  Attributes: < Length mismatch: comparison on first 0 components >
  Length mismatch: comparison on first 2 components
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Tamal Kumar De <tamalkumar.de@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isis",
                      family = "Bulte",
                      role = "aut"),
               person(given = c("Tamal", "Kumar"),
                      family = "De",
                      role = c("aut", "cre"),
                      email = "tamalkumar.de@kuleuven.be"),
               person(given = "Patrick",
                      family = "Onghena",
                      role = "aut"))
as necessary.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tobias",
                    family = "Verbeke",
                    role = c("aut", "cre"),
                    email = "tobias.verbeke@openanalytics.eu")
as necessary.
Maintainer: ‘Lilun Du <dulilun@ust.hk>’

The Description field contains
  Aggregation", <arXiv:2002.11992>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                  ^
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                                         ^
checkRd: (-1) geom_flat_violin.Rd:7: Lost braces
     7 | url{https://gist.github.com/dgrtwo/eb7750e74997891d7c20}
       |    ^
Maintainer: ‘John R. Ortiz <jrortizt@unal.edu.co>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘plot.Rd’:
    https://doi.org/10.25573/data.13118426.v2
checkRd: (-1) sdc_extabs.Rd:59: Lost braces
    59 | (including ]code{forcelist} variables) that can be used to form tables.}
       |                 ^
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Stefano Maria Iacus <siacus@iq.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stefano", "Maria"),
                    family = "Iacus",
                    role = c("aut", "cre"),
                    email = "siacus@iq.harvard.edu")
as necessary.
File ‘sde/libs/sde.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Eduardo García-Portugués <edgarcia@est-econ.uc3m.es>’

The BugReports field in DESCRIPTION has
  https://github.com/egarpor/sdetorus
which should likely be
  https://github.com/egarpor/sdetorus/issues
instead.
Maintainer: ‘Takahiro Shimada <taka.shimada@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takahiro",
                    family = "Shimada",
                    role = c("aut", "cre"),
                    email = "taka.shimada@gmail.com")
as necessary.
Maintainer: ‘Junyue Wu <wu.junyue.p1@dc.tohoku.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junyue",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "wu.junyue.p1@dc.tohoku.ac.jp")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sdpdth.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) msdpd.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:93: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpdth.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperpar.Rd:17: Lost braces
    17 | \item{c}{denotes the expected range of eqn{f} .}
       |                                           ^
Maintainer: ‘Benjamin Baumgartner <benjamin@baumgrt.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assign_meta_data.Rd’
Maintainer: ‘Ali Uenlue <ali.uenlue@icloud.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SDT-package.Rd’:
    https://doi.org/10.1007/978-1-4899-2271-7
    https://doi.org/10.1207/S15327965PLI1104_01
    https://doi.org/10.3389/fpsyg.2016.00272
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘internalization.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘plot.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘plot.share.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘print.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘print.share.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
  File ‘simplex.Rd’:
    https://doi.org/10.2466/14.PR0.117c25z1
  File ‘summary.sdi.Rd’:
    https://doi.org/10.3389/fpsyg.2016.00272
Maintainer: ‘Boxiang Wang <boxiang-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boxiang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "boxiang-wang@uiowa.edu"),
               person(given = "Hui",
                      family = "Zou",
                      role = "aut"))
as necessary.
Maintainer: ‘Jocelyn Chi <jocetchi@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Hsiao, Lin, Wang, Lee, Lu, and Tzeng. (2021+) <arXiv:2105.03228>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wei Qian <weiqian@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Qian",
                    role = c("aut", "cre"),
                    email = "weiqian@stat.umn.edu")
as necessary.
Running examples in ‘seAMLess-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ternaryPlot
> ### Title: Given the immune compositions (ICs) of bulk-RNA samples, this
> ###   function creates a ternary plot similar to ALOT tube from EuroFlow
> ###   analysis and Figure 1E of our paper.
> ### Aliases: ternaryPlot
> 
> ### ** Examples
> 
> library(seAMLess)
> 
> data(minRes)
> ternaryPlot(minRes)
Error in loadNamespace(x) : there is no package called ‘ggtern’
Calls: ternaryPlot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Gabriel Becker <gabembecker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriel",
                    family = "Becker",
                    role = c("aut", "cre"),
                    email = "gabembecker@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘series.R’
Maintainer: ‘Isabella Bitetto <bitetto@coispa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Isabella",
                      family = "Bitetto",
                      role = c("aut", "cre"),
                      email = "bitetto@coispa.it",
                      comment = "COISPA"),
               person(given = "Loretta",
                      family = "Malvarosa",
                      role = "aut",
                      comment = "NISEA"),
               person(given = c("Maria", "Teresa"),
                      family = "Spedicato",
                      role = "aut",
                      comment = "COISPA"),
               person(given = "Ralf",
                      family = "Doering",
                      role = "aut",
                      comment = "THUENEN"),
               person(given = "Joerg",
                      family = "Berkenhagen",
                      role = "aut",
                      comment = "THUENEN"))
as necessary.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.

The Description field contains
  <arXiv:1105.2334v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Danielle Quinn <danielle.quinn@mun.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Danielle",
                    family = "Quinn",
                    role = c("aut", "cre"),
                    email = "danielle.quinn@mun.ca")
as necessary.
Re-building vignettes had CPU time 2.5 times elapsed time
Maintainer: ‘Jae Keun Yoo <peter.yoo@ewha.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jae", "Keun"),
                      family = "Yoo",
                      role = c("aut", "cre"),
                      email = "peter.yoo@ewha.ac.kr"),
               person(given = "Bo-Young",
                      family = "Kim",
                      role = "aut"))
as necessary.
checkRd: (-1) seedCCA.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{u}{numeric, maximum number of projections. The default is 10. This is used for \code{type="seed1"}, \code{type="seed2"} and {tyepe="pls"}.}
       |                                                                                                                                   ^
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘SE.EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    https://doi.org/10.1002/bimj.201700257
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘SE.EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘SE.EQ.dissolution.profiles.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    https://doi.org/10.1002/bimj.201700257
    http://dx.doi.org/10.1208/s12248-020-00458-9
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Maintainer: ‘Eleni Ioanna Delatola <eldelatola@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eleni", "Ioanna"),
                      family = "Delatola",
                      role = c("aut", "cre"),
                      email = "eldelatola@yahoo.gr"),
               person(given = "Emilie",
                      family = "Lebarbier",
                      role = "aut"),
               person(given = "Tristan",
                      family = "Mary-Huard",
                      role = "aut"),
               person(given = "Francois",
                      family = "Radvanyi",
                      role = "aut"),
               person(given = "Stephane",
                      family = "Robin",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Wong",
                      role = "aut"))
as necessary.
Maintainer: ‘Rainer Machne <raim@tbi.univie.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Machne",
                      role = c("aut", "cre"),
                      email = "raim@tbi.univie.ac.at"),
               person(given = c("Douglas", "B."),
                      family = "Murray",
                      role = "aut"),
               person(given = c("Peter", "F."),
                      family = "Stadler",
                      role = "aut"))
as necessary.
Maintainer: ‘Thales Mello <thalesmello@gmail.com>’

The Description field contains
  Leonardi (2018) <arXiv:1501.01756>. The Berlin weather sample dataset
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michelle Picoli <mipicoli@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Danilo C Vieira <vieiradc@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Danilo", "C"),
                      family = "Vieira",
                      role = c("aut", "cre"),
                      email = "vieiradc@yahoo.com.br"),
               person(given = "Gustavo",
                      family = "Fonseca",
                      role = "aut",
                      email = "gfonseca.unifesp@gmail.com"),
               person(given = c("Fabio", "Cop"),
                      family = "Ferreira",
                      role = "aut",
                      email = "fabiocferreira.unifesp@gmail.com"),
               person(given = c("with", "contributions", "from", "Marco", "Colossi"),
                      family = "Brustolin.",
                      role = "aut"))
as necessary.
Maintainer: ‘Qingyuan Zhao <qingyzhao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hera",
                      family = "He",
                      role = "aut"),
               person(given = "Murat",
                      family = "Erdogdu",
                      role = "aut"),
               person(given = "Qingyuan",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "qingyzhao@gmail.com"))
as necessary.
Maintainer: ‘Heewon Jeon <madjakarta@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Heewon",
                    family = "Jeon",
                    role = c("aut", "cre"),
                    email = "madjakarta@gmail.com")
as necessary.

The Description field contains
  Sejong(http://www.sejong.or.kr/) corpus and
  Hannanum(http://semanticweb.kaist.ac.kr/home/index.php/HanNanum)
Please enclose URLs in angle brackets (<...>).
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘selcorr.R’
Maintainer: ‘Xuefei Mi <mi_xue_fei@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xuefei",
                      family = "Mi",
                      role = c("aut", "cre"),
                      email = "mi_xue_fei@hotmail.com"),
               person(given = "Jose",
                      family = "Marulanda",
                      role = "aut"),
               person(given = c("H.", "Friedrich"),
                      family = "Utz",
                      role = "aut"),
               person(given = c("Albrecht", "E."),
                      family = "Melchinger",
                      role = "aut",
                      comment = "Project contact person: Melchinger@uni-hohenheim.de"))
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ryan",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = c("aut", "cre"),
                      email = "tibs@stanford.edu"),
               person(given = "Jonathan",
                      family = "Taylor",
                      role = "aut"),
               person(given = "Joshua",
                      family = "Loftus",
                      role = "aut"),
               person(given = "Stephen",
                      family = "Reid",
                      role = "aut"),
               person(given = "Jelena",
                      family = "Markovic",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.list.selenider_elements.Rd’ ‘elem_ancestors.Rd’ ‘elem_attr.Rd’
    ‘elem_cache.Rd’ ‘elem_click.Rd’ ‘elem_css_property.Rd’
    ‘elem_equal.Rd’ ‘elem_expect.Rd’ ‘elem_expect_all.Rd’
    ‘elem_filter.Rd’ ‘elem_flatten.Rd’ ‘elem_hover.Rd’ ‘elem_name.Rd’
    ‘elem_scroll_to.Rd’ ‘elem_select.Rd’ ‘elem_size.Rd’ ‘elem_text.Rd’
    ‘find_each_element.Rd’ ‘find_element.Rd’ ‘find_elements.Rd’
    ‘get_actual_element.Rd’ ‘s.Rd’
Maintainer: ‘Jie Qiao <qiaojie2004@vip.qq.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bjoern Bornkamp <bbnkmp@mail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bjoern",
                    family = "Bornkamp",
                    role = c("aut", "cre"),
                    email = "bbnkmp@mail.de")
as necessary.
Maintainer: ‘Divyansh Agarwal <divyansh@upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Divyansh", "Agarwal", "Nancy", "R.", "Zhang"),
                      family = "<nzh@wharton.upenn.edu>",
                      role = "aut",
                      email = "nzh@wharton.upenn.edu"),
               person(given = "Divyansh",
                      family = "Agarwal",
                      role = "cre",
                      email = "divyansh@upenn.edu"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marko",
                    family = "Robnik-Sikonja",
                    role = c("aut", "cre"),
                    email = "marko.robnik@fri.uni-lj.si")
as necessary.
Maintainer: ‘Yiran Zhang <yiz038@health.ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yiran",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "yiz038@health.ucsd.edu")
as necessary.

The Description field contains
  Zhang, Y. and Xu, R. (2022) <arXiv:2204.10426>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kyu Ha Lee <klee15239@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kyu", "Ha"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "klee15239@gmail.com"),
               person(given = "Catherine",
                      family = "Lee",
                      role = "aut"),
               person(given = "Danilo",
                      family = "Alvares",
                      role = "aut"),
               person(given = "Sebastien",
                      family = "Haneuse",
                      role = "aut"))
as necessary.
Maintainer: ‘Jinhua Su <944866518@qq.com>’

The Description field contains
  method<arXiv:2108.07928> is an improved method of two-step NR iteration
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Agnieszka Listwon-Krol <krol@lunenfeld.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Agnieszka",
                      family = "Listwon-Krol",
                      role = c("aut", "cre"),
                      email = "krol@lunenfeld.ca"),
               person(given = "Philippe",
                      family = "Saint-Pierre",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) NRW.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) NRW.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:57-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:31-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:47: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  convert2igraph.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Unknown package ‘spreadr’ in Rd xrefs
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) sendmail_options.Rd:32-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:38-39: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Maintainer: ‘Gustavo Paterno <paternogbc@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "R."),
                      family = "Rosenbaum",
                      role = c("aut", "cre"),
                      email = "rosenbaum@wharton.upenn.edu"),
               person(given = c("Dylan", "S."),
                      family = "Small",
                      role = "aut"))
as necessary.
Maintainer: ‘Bo Zhang <bozhan@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bo",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "bozhan@wharton.upenn.edu")
as necessary.

The Description field contains
  B., Small, D. S. (2018). <arXiv:1812.00215>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dylan Small <dsmall@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dylan",
                    family = "Small",
                    role = c("aut", "cre"),
                    email = "dsmall@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘Ibtihel Rebhi <ibtihel.rebhi@enit.utm.tn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ibtihel",
                      family = "Rebhi",
                      role = c("aut", "cre"),
                      email = "ibtihel.rebhi@enit.utm.tn"),
               person(given = "Dhafer",
                      family = "Malouche",
                      role = "ctb"))
as necessary.
Maintainer: ‘Brian C. Franczak <bfrancza@math.mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "C."),
                      family = "Franczak",
                      role = c("aut", "cre"),
                      email = "bfrancza@math.mcmaster.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
Maintainer: ‘Kjetil B Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kjetil", "B"),
                    family = "Halvorsen",
                    role = c("aut", "cre"),
                    email = "kjetil1001@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘E1.19.Rd’:
    \concept{Data on Book Prices, Pages and Type of Bi [TRUNCATED]
  File ‘E2.9.Rd’:
    \concept{Data on Capital, Labour and Value Added f [TRUNCATED]
  File ‘E4.11.Rd’:
    \concept{ Data on Cost of Repairing Starters, Ring [TRUNCATED]
  File ‘E7.2.Rd’:
    \concept{Prices of Crude Oil, Natural Gas, Bitumin [TRUNCATED]
  File ‘E9.3.Rd’:
    \concept{ Areas, lengths and widths of rectangles  [TRUNCATED]
  File ‘E9.8.Rd’:
    \concept{ Data on monthly rent, annual income and  [TRUNCATED]
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Running ‘testthat.R’ [108s/120s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > 
  > library("testthat")
  > library("sentopics")
  > 
  > if (Sys.getenv("R_COVR") != "true") {
  +   test_check("sentopics")
  + } else {
  +   test_check("sentopics", reporter = default_reporter())
  +   # test_check("sentopics", reporter = LocationReporter)
  + }
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  0%   10   20   30   40   50   60   70   80   90   100%
  [----|----|----|----|----|----|----|----|----|----|
  **************************************************|
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 337 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-parallel_chains.R:97:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-conversions.R:122:3'): from seededlda ──────────────────────────
  Error in `dfm(ECB_press_conferences_tokens)`: could not find function "dfm"
  Backtrace:
      ▆
   1. └─seededlda::textmodel_lda(...) at test-conversions.R:122:3
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 337 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Brian Greenhill <bgreenhill@albany.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "D."),
                      family = "Greenhill",
                      role = "aut"),
               person(given = c("Michael", "D."),
                      family = "Ward",
                      role = "aut"),
               person(given = "Audrey",
                      family = "Sacks",
                      role = "aut"),
               person(given = "Brian",
                      family = "Greenhill",
                      role = "cre",
                      email = "bgreenhill@albany.edu"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Inder Tecuapetla-Gómez [cre, aut] (0000-0001-6251-972X), Fanny Galicia-Gómez [ctb], Francisco Rosales-Marticorena [ctb]’
  Authors@R: ‘Inder Tecuapetla-Gómez [cre, aut] (ORDIC: 0000-0001-6251-972X), Fanny Galicia-Gómez [ctb], Francisco Rosales-Marticorena [ctb]’
Maintainer: ‘Lewis A. Jones <LewisA.Jones@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xiaoshu Zhu <xiaoshuzhu@westat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoshu",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "xiaoshuzhu@westat.com"),
               person(given = "Sharon",
                      family = "Lohr",
                      role = "aut"))
as necessary.
Maintainer: ‘Dalibor Krleža <dalibor.krleza@fer.hr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dalibor",
                    family = "Krleža",
                    role = c("aut", "cre"),
                    email = "dalibor.krleza@fer.hr")
as necessary.
Specified C++14: please drop specification unless essential
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Bettina Budeus <bettina.budeus@stud.uni-due.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bettina",
                    family = "Budeus",
                    role = c("aut", "cre"),
                    email = "bettina.budeus@stud.uni-due.de")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following files/directories:
  ‘assocpointpair_result.csv’ ‘foundereffectfinder_result.csv’
  ‘getfreqs_result.csv’ ‘getfreqs_result.png’ ‘orPlot.pdf1_1.pdf’
  ‘orPlot.pdf2_1.pdf’ ‘orPlot.pdf3_1.pdf’ ‘orPlot.pdf4_1.pdf’
  ‘orPlot.pdf5_1.pdf’ ‘orPlot.pdf6_1.pdf’ ‘orPlot.pdf7_1.pdf’
  ‘orPlot.pdf8_1.pdf’ ‘q-values_result.csv’ ‘rewritetuple_result.csv’
  ‘tartan_plot.pdf’ ‘vispair_plot.pdf’ ‘vispairfeat_plot.pdf’
  ‘volcano_plot.pdf’
Maintainer: ‘Niklas Pfister <pfister@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Niklas",
                      family = "Pfister",
                      role = c("aut", "cre"),
                      email = "pfister@stat.math.ethz.ch"),
               person(given = "Jonas",
                      family = "Peters",
                      role = "aut"))
as necessary.
Maintainer: ‘Paul C. Boutros <pboutros@mednet.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fouad",
                      family = "Yousif",
                      role = "aut"),
               person(given = "Xihui",
                      family = "Lin",
                      role = "aut"),
               person(given = "Fan",
                      family = "Fan",
                      role = "aut"),
               person(given = "Christopher",
                      family = "Lalansingh",
                      role = "aut"),
               person(given = "John",
                      family = "Macdonald",
                      role = "aut"),
               person(given = c("Paul", "C."),
                      family = "Boutros",
                      role = "cre",
                      email = "pboutros@mednet.ucla.edu"))
as necessary.
Maintainer: ‘Mingli Lei<leimingli2013@sjtu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mingli",
                      family = "Lei",
                      role = c("aut", "cre"),
                      email = "leimingli2013@sjtu.edu.cn"),
               person(given = "Jia",
                      family = "Xu",
                      role = "aut"),
               person(given = "Li-Ching",
                      family = "Huang",
                      role = "aut"),
               person(given = "Lily",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jing",
                      family = "Li",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘consensus.R’
Maintainer: ‘Hui Zheng <hzheng1@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "A"),
                      family = "Schoenfeld",
                      role = "aut"),
               person(given = "Hui",
                      family = "Zheng",
                      role = c("aut", "cre"),
                      email = "hzheng1@mgh.harvard.edu"))
as necessary.
Maintainer: ‘Martin Seilmayer <m.seilmayer@hzdr.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "m.seilmayer@hzdr.de")
as necessary.
Maintainer: ‘Edward Schuberg <eschu003@ucr.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edward",
                    family = "Schuberg",
                    role = c("aut", "cre"),
                    email = "eschu003@ucr.edu")
as necessary.
Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1604.07299>. Multivariate observations of SERRS are highly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Oisín Ryan <o.ryan@uu.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oisín",
                    family = "Ryan",
                    role = c("aut", "cre"),
                    email = "o.ryan@uu.nl")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/ryanoisin/SEset
which should likely be
  https://github.com/ryanoisin/SEset/issues
instead.
checkRd: (-1) SEset_to_network.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) network_to_SEset.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) network_to_path.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) path_to_network.Rd:29: Escaped LaTeX specials: \&
Maintainer: ‘Rakshitha Godahewa <rakshithagw@gmail.com>’

The Description field contains
  in Godahewa et al. (2022) <arXiv:2211.08661v1>. The model uses the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zhi Jin <nalanchongxuan@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhi",
                      family = "Jin",
                      role = c("aut", "cre"),
                      email = "nalanchongxuan@163.com"),
               person(given = "Jing",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Zheyang",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Mark van der Loo <mark.vanderloo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "van der Loo",
                    role = c("aut", "cre"),
                    email = "mark.vanderloo@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Joiner.Rd’ ‘Splitter.Rd’ ‘add_node.Rd’ ‘print.sewage_pipeline.Rd’
    ‘pull_output.Rd’ ‘run.Rd’
Maintainer: ‘Yann Desjeux <yann.desjeux@inra.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sfaendog.Rd’:
    https://doi.org/10.1016/0304-4076(87)90015-7
    https://doi.org/10.1093/ajae/aaw077
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sfcr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘h_curve.Rd’ ‘sfc_4x4_meander.Rd’ ‘sfc_generator.Rd’
    ‘spacefilling.Rd’
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
File ‘sfheaders/libs/sfheaders.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘st_transform_outline.R’
Maintainer: ‘Kevin Titeca <sfinxinteractomics@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Utz-Uwe Haus <uhaus@cray.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Found the following (possibly) invalid file URIs:
  URI: github
    From: README.md
  URI: Win-Builder
    From: README.md
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SFS.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Mohamed Laib <laib.med@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mohamed",
                      family = "Laib",
                      role = c("aut", "cre"),
                      email = "laib.med@gmail.com"),
               person(given = "Mikhail",
                      family = "Kanevski",
                      role = "aut"))
as necessary.
Maintainer: ‘Monique Graf <monique.p.n.graf@bluewin.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monique",
                    family = "Graf",
                    role = c("aut", "cre"),
                    email = "monique.p.n.graf@bluewin.ch")
as necessary.
Maintainer: ‘Youngki Shin <shiny11@mcmaster.ca>’

The Description field contains
  <arXiv:2209.14502> "Fast Inference for Quantile Regression with Tens of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  sgd/explicit_sgd.h:25:19: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  sgd/implicit_sgd.h:150:19: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  sgd/momentum_sgd.h:27:19: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  sgd/nesterov_sgd.h:27:19: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
  validity-check/validity_check.h:21:17: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sgd.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
'library' or 'require' call not declared from: ‘microbenchmark’
Maintainer: ‘Gregory Vaughan <gvaughan@bentley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregory",
                      family = "Vaughan",
                      role = c("aut", "cre"),
                      email = "gvaughan@bentley.edu"),
               person(given = "Kun",
                      family = "Chen",
                      role = "ctb"),
               person(given = "Jun",
                      family = "Yan",
                      role = "ctb"))
as necessary.
checkRd: (-1) bisee.Rd:127: Lost braces
   127 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) hisee.Rd:101: Lost braces
   101 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) isee.Rd:116: Lost braces
   116 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) see.Rd:98: Lost braces
    98 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "James", "J.", "Majure", "Iowa", "State"),
                      family = "University",
                      role = "aut",
                      email = "majure@iastate.edu"),
               person(given = c("R", "port", "+", "extensions", "by", "Albrecht"),
                      family = "Gebhardt",
                      role = "aut",
                      email = "albrecht.gebhardt@aau.at"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
Maintainer: ‘Luigi Augugliaro <luigi.augugliaro@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luigi",
                    family = "Augugliaro",
                    role = c("aut", "cre"),
                    email = "luigi.augugliaro@unipa.it")
as necessary.
Maintainer: ‘Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "Alberto", "Cardozo"),
                      family = "Delgado",
                      role = c("aut", "cre"),
                      email = "cardozorpackages@gmail.com"),
               person(given = "G.",
                      family = "Paula",
                      role = "aut"),
               person(given = "L.",
                      family = "Vanegas",
                      role = "aut"))
as necessary.
Maintainer: ‘Noah Simon <nrsimon@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Noah",
                      family = "Simon",
                      role = c("aut", "cre"),
                      email = "nrsimon@uw.edu"),
               person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Balasubramanian Narasimhan <naras@stat.stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Balasubramanian",
                    family = "Narasimhan",
                    role = c("aut", "cre"),
                    email = "naras@stat.stanford.edu",
                    comment = "with input from Tze Lai and Mei-Chiung Shih")
as necessary.
Maintainer: ‘Thomas Vigie <vigiethomas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Vigie",
                    role = c("aut", "cre"),
                    email = "vigiethomas@gmail.com")
as necessary.
Maintainer: ‘Irene Castro Conde <irene.castro@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Irene", "Castro"),
                      family = "Conde",
                      role = c("aut", "cre"),
                      email = "irene.castro@uvigo.es"),
               person(given = c("Jacobo", "de", "Una"),
                      family = "Alvarez",
                      role = "aut"))
as necessary.
Maintainer: ‘Benoit Liquet <b.liquet@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Benoit",
                      family = "Liquet",
                      role = c("aut", "cre"),
                      email = "b.liquet@uq.edu.au"),
               person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = "aut"),
               person(given = "Camilo",
                      family = "Broc",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gPLS.Rd: cim
  gPLSda.Rd: plotIndiv, plotVar, cim, network
  sPLSda.Rd: plotIndiv, plotVar, cim, network
  sgPLSda.Rd: plotIndiv, plotVar, cim, network
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sgraph_utils.R’
Maintainer: ‘Massimiliano Pastore <massimiliano.pastore@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Massimiliano", "Pastore", "&", "Luigi"),
                      family = "Lombardi",
                      role = "aut"),
               person(given = "Massimiliano",
                      family = "Pastore",
                      role = "cre",
                      email = "massimiliano.pastore@unipd.it"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Carter Davis <cdavis40@chicagobooth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carter",
                    family = "Davis",
                    role = c("aut", "cre"),
                    email = "cdavis40@chicagobooth.edu")
as necessary.
checkRd: (-1) sgt.Rd:55: Lost braces
    55 |   \code{sigma <= 0}, \code{lambda <= -1}, \code{lambda >= 1}, \code{p <= 0}, and \code{q <= 0} are errors and return \code{NaN}. Also, if \code{mean.cent} is \code{TRUE} but code{p*q <= 1}, the result is an error and \code{NaNs} are produced. Similarly, if \code{var.adj} is \code{TRUE} but code{p*q <= 2}, the result is an error and \code{NaNs} are produced.
       |                                                                                                                                                                                   ^
checkRd: (-1) sgt.Rd:55: Lost braces
    55 |   \code{sigma <= 0}, \code{lambda <= -1}, \code{lambda >= 1}, \code{p <= 0}, and \code{q <= 0} are errors and return \code{NaN}. Also, if \code{mean.cent} is \code{TRUE} but code{p*q <= 1}, the result is an error and \code{NaNs} are produced. Similarly, if \code{var.adj} is \code{TRUE} but code{p*q <= 2}, the result is an error and \code{NaNs} are produced.
       |                                                                                                                                                                                                                                                                                                        ^
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Maintainer: ‘Xiyue Liao <xliao@sdsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiyue",
                      family = "Liao",
                      role = c("aut", "cre"),
                      email = "xliao@sdsu.edu"),
               person(given = c("Mary", "C"),
                      family = "Meyer",
                      role = "aut"))
as necessary.
checkRd: (-1) changept.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) changept.Rd:20-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) changept.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ben Stabler <benstabler@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Stabler",
                    role = c("aut", "cre"),
                    email = "benstabler@yahoo.com")
as necessary.
checkRd: (-1) powerShape.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:32-33: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Karline",
                    family = "Soetaert",
                    role = c("aut", "cre"),
                    email = "karline.soetaert@nioz.nl")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cluster.plot.Rd: vegan
  detect.outline.Rd: pixmap
  generateShapeCoefficients.Rd: wd, wavethresh
  plotWaveletShape.Rd: wavethresh
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ian Dryden   <ian.dryden@nottingham.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ian", "L."),
                      family = "Dryden",
                      role = "aut"),
               person(given = "Ian",
                      family = "Dryden",
                      role = "cre",
                      email = "ian.dryden@nottingham.ac.uk"))
as necessary.
Maintainer: ‘Jingyi Liang <jingyiliang19@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jingyi",
                    family = "Liang",
                    role = c("aut", "cre"),
                    email = "jingyiliang19@163.com")
as necessary.
Maintainer: ‘Szymon Maksymiuk <sz.maksymiuk@gmail.com>’

The Description field contains
  Lundberg, S., et al., (2016) <arXiv:1705.07874> The SHAP method is used
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘W.J. Braun <john.braun@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("W.", "John"),
                      family = "Braun",
                      role = "aut",
                      email = "john.braun@ubc.ca"),
               person(given = "W.J.",
                      family = "Braun",
                      role = "cre",
                      email = "john.braun@ubc.ca"))
as necessary.
Maintainer: ‘Damien Challet <damien.challet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damien",
                    family = "Challet",
                    role = c("aut", "cre"),
                    email = "damien.challet@gmail.com")
as necessary.

The Description field contains
  signal-to-noise ratio, for heavy-tailed data (see <arXiv:1505.01333>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Liang He <lianghe@mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liang",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "lianghe@mit.edu")
as necessary.
Maintainer: ‘Rodrigo F. de Mello <mellorf@gmail.com>’

The Description field contains
  Coefficient of Supervised Learning Algorithms" <arXiv:1911.05461>; de
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) age_corr.Rd:15: Lost braces
    15 | \item{plot}{Should the results be plotted? (/code{TRUE/FALSE})}
       |                                                  ^
checkRd: (-1) age_corr.Rd:17: Lost braces
    17 | \item{agecorrection}{Correct for jumps in age (/code{TRUE}) or
       |                                                     ^
checkRd: (-1) age_corr.Rd:18: Lost braces
    18 | only for starting time (/code{FALSE})}
       |                              ^
Maintainer: ‘Andrew Lee <andrewl@maths.usyd.edu.au>’

The Description field contains
  Peres, Lee and Keich (2020) <arXiv:2004.07429> where it is also shown
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^
Maintainer: ‘Swechhya Bista <swechhyabista@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Swechhya",
                    family = "Bista",
                    role = c("aut", "cre"),
                    email = "swechhyabista@gmail.com")
as necessary.
Maintainer: ‘Eric Bailey <ebailey@idem.in.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eric",
                    family = "Bailey",
                    role = c("aut", "cre"),
                    email = "ebailey@idem.in.gov")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Buttons.Rd: actionButton, checkboxInput
  Collapses.Rd: tabsetPanel, shinyServer
  Modals.Rd: tabPanel
  Tooltips_and_Popovers.Rd: renderUI
  bsButton.Rd: icon
  bsExample.Rd: runApp
  popify.Rd: renderUI
  tipify.Rd: renderUI
  updateButton.Rd: icon, submitButton
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘filter_discrete.R’ ‘filter_query.R’ ‘renders.R’
Maintainer: ‘Emi Tanaka <emi.tanaka@sydney.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emi",
                      family = "Tanaka",
                      role = c("aut", "cre"),
                      email = "emi.tanaka@sydney.edu.au"),
               person(family = "Niichan",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘destroyModule.R’ ‘makeModule.R’
Maintainer: ‘Alex Pickering <alexvpickering@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Pickering",
                    role = c("aut", "cre"),
                    email = "alexvpickering@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  downloadablePlot.Rd: renderPlot
  downloadablePlotUI.Rd: plotOutput
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) js_calls.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pickCheckboxNamesAndLabels.Rd:14: Lost braces
    14 | \item{choices}{link{pickCheckboxInput} choices list.}
       |                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘continue_sequence.R’ ‘get_exchange_rates.R’
Maintainer: ‘Huseyin Yildiz <huseyinyildiz35@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Huseyin",
                    family = "Yildiz",
                    role = c("aut", "cre"),
                    email = "huseyinyildiz35@gmail.com")
as necessary.
checkRd: (-1) shinyjs-defunct.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shinyjs-defunct.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shinyjs-defunct.Rd:20: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Joe Wandy <joe.wandy@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joe",
                    family = "Wandy",
                    role = c("aut", "cre"),
                    email = "joe.wandy@glasgow.ac.uk")
as necessary.
checkRd: (-1) store_googledrive.Rd:19: Lost braces; missing escapes or markup?
    19 | See the {gargle} package to manage authentication, and especially
       |         ^
checkRd: (-1) store_googledrive.Rd:20: Lost braces; missing escapes or markup?
    20 | \href{https://gargle.r-lib.org/articles/articles/managing-tokens-securely.html}{this vignette from {gargle} package} to manage the process.
       |                                                                                                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lottie_addEventListener.Rd’ ‘lottie_button.Rd’
    ‘lottie_removeEventListener.Rd’
checkRd: (-1) custom-labels.Rd:7: Lost braces; missing escapes or markup?
     7 | \title{Modify {shinymanager} labels to use custom text}
       |               ^
checkRd: (-1) use_language.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Use {shinymanager} labels}
       |            ^
Maintainer: ‘Andreas Neudecker <andreas.neudecker@inwt-statistics.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Neudecker",
                    role = c("aut", "cre"),
                    email = "andreas.neudecker@inwt-statistics.de")
as necessary.
Maintainer: ‘Jean Bertin <jean.bertin@mines-paris.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jean",
                    family = "Bertin",
                    role = c("aut", "cre"),
                    email = "jean.bertin@mines-paris.org")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fabs.Rd’
Maintainer: ‘Reneé González-Guzmán <rguzman@geociencias.unam.mx>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alex Pickering <alexvpickering@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Pickering",
                    role = c("aut", "cre"),
                    email = "alexvpickering@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) shiny_pivot_table.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:64: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Jari Haukka <jari.haukka@helsinki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jari",
                    family = "Haukka",
                    role = c("aut", "cre"),
                    email = "jari.haukka@helsinki.fi")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Alberto Almuiña <albertogonzalezalmuinha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Almuiña",
                    role = c("aut", "cre"),
                    email = "albertogonzalezalmuinha@gmail.com")
as necessary.
Maintainer: ‘Jeff Allen <jeff@trestletech.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Trestle",
                      family = "Technology",
                      role = "aut"),
               person(family = "LLC.",
                      role = "aut"),
               person(given = "Jeff",
                      family = "Allen",
                      role = "cre",
                      email = "jeff@trestletech.com"))
as necessary.
Found the following files/directories:
  ‘.shiny_run’ ‘shinyShortcut.desktop’
Maintainer: ‘Sinead E. Morris <sinead.morris@columbia.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app_server.R’ ‘function.R’
Maintainer: ‘Amit Kohli <amit@amitkohli.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Amit",
                    family = "Kohli",
                    role = c("aut", "cre"),
                    email = "amit@amitkohli.com")
as necessary.
checkRd: (-1) run_shinytitle_example.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) run_shinytitle_example.Rd:19: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "John",
                      family = "Papa",
                      role = "aut"),
               person(given = "Tim",
                      family = "Ferrell",
                      role = "aut"),
               person(given = "Hans",
                      family = "Fjällemark",
                      role = "aut"),
               person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘slimSelectInput.Rd’
Maintainer: ‘ORPHANED’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexey",
                      family = "Shipunov",
                      role = c("aut", "cre")),
               person(given = "Paul",
                      family = "Murrell",
                      role = "ctb"),
               person(given = "Marcello",
                      family = "D'Orazio",
                      role = "ctb"),
               person(given = "Stephen",
                      family = "Turner",
                      role = "ctb"),
               person(given = "Eugeny",
                      family = "Altshuler",
                      role = "ctb"),
               person(given = "Roland",
                      family = "Rau",
                      role = "ctb"),
               person(given = c("Marcus", "W"),
                      family = "Beck",
                      role = "ctb"),
               person(given = "Sebastian",
                      family = "Gibb",
                      role = "ctb"),
               person(given = "Weiliang",
                      family = "Qiu",
                      role = "ctb"),
               person(given = "Emmanuel",
                      family = "Paradis",
                      role = "ctb"),
               person(given = "Roger",
                      family = "Koenker",
                      role = "ctb"),
               person(given = c("R", "Core"),
                      family = "Team",
                      role = "ctb"),
               person(family = "ORPHANED",
                      role = "cre"))
as necessary.
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
Maintainer: ‘José Carlos Del Valle <jcval94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("José", "Carlos", "Del"),
                    family = "Valle",
                    role = c("aut", "cre"),
                    email = "jcval94@gmail.com")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = c("authors/contributors", "of", "the", "included", "fonts.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = c("authors/contributors", "of", "the", "included", "software.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Maintainer: ‘Binbin Lu <binbinlu@whu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Binbin",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "binbinlu@whu.edu.cn")
as necessary.
Maintainer: ‘Anestis Touloumis <A.Touloumis@brighton.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ShrinkCovMat.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Author field differs from that derived from Authors@R
  Author:    ‘Anestis Touloumis [aut, cre] (0000-0002-5965-1639)’
  Authors@R: ‘Anestis Touloumis [aut, cre] (ORCHID: 0000-0002-5965-1639)’
Maintainer: ‘Carlos Mercado <carlos.mercado@flipsidecrypto.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Mercado",
                    role = c("aut", "cre"),
                    email = "carlos.mercado@flipsidecrypto.com")
as necessary.
Maintainer: ‘Kyle Caudle <kyle.caudle@sdsmt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyle",
                    family = "Caudle",
                    role = c("aut", "cre"),
                    email = "kyle.caudle@sdsmt.edu")
as necessary.
Maintainer: ‘Yuval Benjamini <yuvalbenj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuval",
                    family = "Benjamini",
                    role = c("aut", "cre"),
                    email = "yuvalbenj@gmail.com")
as necessary.
Maintainer: ‘Siddhanta Phuyal <siddhantaphuyal7159@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Siddhanta", "Phuyal", "Jyotirmoy", "Sarkar", "<jsarkar@iupui.edu>", "Mamunur", "Rashid"),
                      family = "<mrashid@depauw.edu>",
                      role = "aut",
                      email = "mrashid@depauw.edu"),
               person(given = "Siddhanta",
                      family = "Phuyal",
                      role = "cre",
                      email = "siddhantaphuyal7159@gmail.com"))
as necessary.
checkRd: (-1) shutterplot.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.'
       |                       ^
Maintainer: ‘Marie-Karelle Riviere <eldamjh@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marie-Karelle",
                    family = "Riviere",
                    role = c("aut", "cre"),
                    email = "eldamjh@gmail.com")
as necessary.
Maintainer: ‘Noé Palmerin  <sie@banxico.org.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("DGIE", "-", "Banco"),
                      family = "de México",
                      role = "aut"),
               person(given = "Noé",
                      family = "Palmerin",
                      role = "cre",
                      email = "sie@banxico.org.mx"))
as necessary.
Maintainer: ‘Ruiyan Luo <rluo@gsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Ruiyan",
                      role = c("aut", "cre"),
                      email = "rluo@gsu.edu"),
               person(given = "Xin",
                      family = "Qi",
                      role = "aut"))
as necessary.
Maintainer: ‘Tianyu Zhang <tianyuz3@andrew.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tianyu",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "tianyuz3@andrew.cmu.edu")
as necessary.

The Description field contains
  methods can be found in: <arXiv:2206.02994>
  <arXiv:2104.00846><arXiv:2310.12140>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Sieve-package.Rd’:
    \keyword{sieve estimation; estimation using orthog [TRUNCATED]
Maintainer: ‘Petr Matousu <pmatousu@more-praha.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Petr",
                    family = "Matousu",
                    role = c("aut", "cre"),
                    email = "pmatousu@more-praha.cz")
as necessary.
checkRd: (-1) drr.Rd:36: Lost braces; missing escapes or markup?
    36 |   \code{drr} {is Rosin - Rammler probability density function}\cr
       |              ^
checkRd: (-1) drr.Rd:37: Lost braces; missing escapes or markup?
    37 |   \code{urr} {is Rosin - Rammler cumulative distribution function (CDF) representing undersize mass fraction}\cr
       |              ^
checkRd: (-1) drr.Rd:38: Lost braces
    38 |   \code{orr} {is Rosin - Rammler complementary CDF representing oversize mass fraction ie. relative remainder on the sieve with the mesh size \code{x}}\cr
       |              ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Hanwen Huang <hanwenh.unc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanwen",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "hanwenh.unc@gmail.com"),
               person(given = c("Yufeng", "Liu", "&", "J.", "S."),
                      family = "Marron",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘show_group_enrichment.R’
No methods found in package ‘GenomeInfoDb’ for request: ‘merge’ when loading ‘Signac’

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Missing link(s) in Rd file 'GenomeBinMatrix.Rd':
  ‘[GenomeInfoDb]{seqlengths}’

Missing link(s) in Rd file 'seqinfo-methods.Rd':
  ‘[GenomeInfoDb]{seqinfo}’

See section 'Cross-references' in the 'Writing R Extensions' manual.
Maintainer: ‘Mathew Chamberlain <chamberlainphd@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) add_k_mer_state.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  survivalForest.Rd: forestplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Furkan Gursoy <furkan.gursoy@boun.edu.tr>’

The Description field contains
  Networks. <arXiv:2012.05216>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Louis-Marvin Sander <louis.sander@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Louis-Marvin",
                      family = "Sander",
                      role = c("aut", "cre"),
                      email = "louis.sander@web.de"),
               person(given = c("master", "of", "ecology", "student", "from"),
                      family = "Bayreuth",
                      role = "aut"),
               person(family = "DE",
                      role = "aut"))
as necessary.
Maintainer: ‘Adriano Zanin Zambom <adriano.zambom@csun.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jongwook",
                      family = "Kim",
                      role = "aut"),
               person(given = c("Adriano", "Zanin"),
                      family = "Zambom",
                      role = c("aut", "cre"),
                      email = "adriano.zambom@csun.edu"))
as necessary.
Maintainer: ‘Alexandra Johnson <alexandra@sigopt.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexandra",
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "alexandra@sigopt.com")
as necessary.
Maintainer: ‘Witold Wolski <wew@fgcz.ethz.ch>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) sig.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘p_sie.R’ ‘prp.R’ ‘siie.R’
Maintainer: ‘Martin Olivier <olivier.martin@inrae.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Carpentier",
                      family = "F.",
                      role = "aut"),
               person(given = "Martin",
                      family = "O.",
                      role = "aut"),
               person(given = "Martin",
                      family = "Olivier",
                      role = "cre",
                      email = "olivier.martin@inrae.fr"))
as necessary.
checkRd: (-1) siland.Rd:64: Lost braces; missing escapes or markup?
    64 | \item x_{l,i}, local variable l,
       |         ^
checkRd: (-1) siland.Rd:70: Lost braces; missing escapes or markup?
    70 | \item d_{r,i} the distance between the center of pixel r and the observation at site i.
       |         ^
Maintainer: ‘Rong Zhang <roz16@pitt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "roz16@pitt.edu"),
               person(given = "Zhao",
                      family = "Ren",
                      role = "aut"),
               person(given = "Wei",
                      family = "Chen",
                      role = "aut"))
as necessary.
checkRd: (-1) inlandwaters.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:19: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Xianyang Zhang <zhangxiany@stat.tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xianyang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangxiany@stat.tamu.edu"),
               person(given = "Guang",
                      family = "Cheng",
                      role = "aut"),
               person(given = "Jincheng",
                      family = "Bai",
                      role = "aut"))
as necessary.
Maintainer: ‘Justin Leach <jleach@uab.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/jmleach-bst/sim2Dpredictr
which should likely be
  https://github.com/jmleach-bst/sim2Dpredictr/issues
instead.
checkRd: (-1) sim_Y_Binary_X.Rd:51: Lost braces
    51 |     \item \code{dist = "binomial"} is drawn from eqn{Bin(XB, XB(1-XB))}
       |                                                     ^
Maintainer: ‘Allison Cynthia Fialkowski <allijazz@uab.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Allison", "Cynthia"),
                    family = "Fialkowski",
                    role = c("aut", "cre"),
                    email = "allijazz@uab.edu")
as necessary.

Found the following (possibly) invalid file URIs:
  URI: corr_bounds.html
    From: inst/doc/method_comp.html
  URI: variable_types
    From: inst/doc/workflow.html
  URI: errorloop.html
    From: inst/doc/workflow.html

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘intercorr_cont.Rd’:
    \keyword{Fleishman,}
    \keyword{continuous,}
    \keyword{correlation,}
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘Sim.DiffProc/libs/Sim.DiffProc.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Kathrin Moellenhoff <kathrin.moellenhoff@rub.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kathrin",
                    family = "Moellenhoff",
                    role = c("aut", "cre"),
                    email = "kathrin.moellenhoff@rub.de")
as necessary.
checkRd: (-1) create_modelDF.Rd:25-38: Lost braces
    25 | convert_xlsx_to_csv<-function(xlsx_file){
       |                                         ^
checkRd: (-1) create_modelDF.Rd:33-36: Lost braces
    33 |   for (i in Sheetnames) {
       |                         ^
Maintainer: ‘Waldir Leoncio <waldir.leoncio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Waldir",
                    family = "Leoncio",
                    role = c("aut", "cre"),
                    email = "waldir.leoncio@gmail.com")
as necessary.
Maintainer: ‘Andreas Alfons <alfons@ese.eur.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Wolfgang Rolke <wolfgang.rolke@upr.edu>’

The Description field contains
  value.  Details can be found in <arXiv:2007.04727>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nusrat Rabbee <rabbee@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Danyi",
                      family = "Xiong",
                      role = "aut"),
               person(given = "Teeranan",
                      family = "Pokaprakarn",
                      role = "aut"),
               person(given = "Hiroto",
                      family = "Udagawa",
                      role = "aut"),
               person(given = "Nusrat",
                      family = "Rabbee",
                      role = c("aut", "cre"),
                      email = "rabbee@berkeley.edu"))
as necessary.
Found the following files/directories:
  ‘database.csv’ ‘output.csv’ ‘output_clst.csv’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bootstrap-projection.R’ ‘bootstrap_CIs.Rd’ ‘bundle_sim.R’
    ‘calc_coverage.R’ ‘calc_rejection.R’ ‘extrapolate_coverage.Rd’
    ‘utilities.R’
Maintainer: ‘Kevin Toohey <kevintoohey@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Toohey",
                    role = c("aut", "cre"),
                    email = "kevintoohey@live.com")
as necessary.
checkRd: (-1) internal.statistics.one.lm.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) internal.statistics.one.lm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Luke Miratrix <lmiratrix@g.harvard.edu>’

The Description field contains
  <arXiv:2002.05746>. This package provides methods for fitting ITS
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Charlie Wusuo Liu <liuwusuo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Charlie", "Wusuo"),
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwusuo@gmail.com")
as necessary.
Maintainer: ‘Rex Parsons <Rex.Parsons94@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hyung Park <parkh15@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyung",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "parkh15@nyu.edu"),
               person(given = "Eva",
                      family = "Petkova",
                      role = "aut"),
               person(given = "Thaddeus",
                      family = "Tarpey",
                      role = "aut"),
               person(given = c("R.", "Todd"),
                      family = "Ogden",
                      role = "aut"))
as necessary.
Maintainer: ‘Holger Reulen <hreulen@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Holger",
                    family = "Reulen",
                    role = c("aut", "cre"),
                    email = "hreulen@uni-goettingen.de")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘si_calculate.Rd’
Maintainer: ‘Rami Yaari <ramiyaari@gmail.com>’

The Description field contains
  & Yaari (2018) <arXiv:1807.04202>.  Dattner et al. (2017)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘anon.R’ ‘anonymise.Rd’
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Roger", "D."),
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "roger.peng@austin.utexas.edu")
as necessary.
Maintainer: ‘Nathan Sheffield <nathan@code.databio.org>’

The BugReports field in DESCRIPTION has
  https://github.com/databio/simpleCache
which should likely be
  https://github.com/databio/simpleCache/issues
instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    simpleCache [0.0.1]
Maintainer: ‘Stephen Wisser <swisser98@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Stephen", "C"),
                      family = "Wisser",
                      role = "aut"),
               person(given = "Stephen",
                      family = "Wisser",
                      role = "cre",
                      email = "swisser98@gmail.com"))
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Samuel Fernandes <samuelf@illinois.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Augustin Luna <lunaa@cbio.mskcc.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Augustin",
                      family = "Luna",
                      role = c("aut", "cre"),
                      email = "lunaa@cbio.mskcc.org"),
               person(given = "Vinodh",
                      family = "Rajapakse",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘markdown_block.R’
Specified C++11: please drop specification unless essential
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘John P. Nolan  <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "P."),
                      family = "Nolan",
                      role = c("aut", "cre"),
                      email = "jpnolan@american.edu"),
               person(given = c("with", "parts", "adapted", "from"),
                      family = "Fortran",
                      role = "aut"),
               person(given = c("matlab", "code", "by", "Alan"),
                      family = "Genz",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Mercier <amercier@g.harvard.edu>’

The Description field contains
  (2009)<arXiv:0803.0929>.  Koutis I., Levin, A., Peng, R.
  (2013)<arXiv:1209.5821>. Toivonen, H., Mahler, S., Zhou, F.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘glimpse_na.Rd’
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Greene",
                    role = c("aut", "cre"),
                    email = "dg333@cam.ac.uk")
as necessary.
Maintainer: ‘Samuel Benidt <sgbenidt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Samuel",
                    family = "Benidt",
                    role = c("aut", "cre"),
                    email = "sgbenidt@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hyung Park <parkh15@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyung",
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "parkh15@nyu.edu"),
               person(given = "Eva",
                      family = "Petkova",
                      role = "aut"),
               person(given = "Thaddeus",
                      family = "Tarpey",
                      role = "aut"),
               person(given = c("R.", "Todd"),
                      family = "Ogden",
                      role = "aut"))
as necessary.

The Description field contains
  dose rules" <arXiv:2006.00267v2> for detail of the method. The model
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘addCorGen.Rd’
Specified C++14: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Version (Date)
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.

The Description field contains
  Van Aelst and Zamar (2019) <arXiv:1812.05678>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adrian Staempfli <adrian.staempfli@fhsg.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Staempfli",
                      role = c("aut", "cre"),
                      email = "adrian.staempfli@fhsg.ch"),
               person(given = "Christoph",
                      family = "Strauss",
                      role = "aut"),
               person(given = "Michael",
                      family = "Schmid",
                      role = "aut"))
as necessary.
Maintainer: ‘Maya B. Mathur <mmathur@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maya", "B."),
                      family = "Mathur",
                      role = c("aut", "cre"),
                      email = "mmathur@stanford.edu"),
               person(given = "Kristopher",
                      family = "Kapphahn",
                      role = "aut"),
               person(given = "Ariadna",
                      family = "Garcia",
                      role = "aut"),
               person(given = "Manisha",
                      family = "Desai",
                      role = "aut"),
               person(given = c("Maria", "E."),
                      family = "Montez-Rath",
                      role = "aut"))
as necessary.

The Description field contains
  the main wrapper function. See Montez-Rath et al. <arXiv:1709.10074>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) make_one_dataset.Rd:67: Lost braces; missing escapes or markup?
    67 |  \code{within.SD} to be extremely small (e.g., $1 * 10^{-7}$) and all corresponding correlations in matrix
       |                                                        ^
Found the following significant warnings:
  rtoarmadillo.cpp:559:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  rtoarmadillo.cpp:560:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simts.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

The Description field contains
  <arXiv:1607.00021>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) add_bold.Rd:15: Lost braces; missing escapes or markup?
    15 | For example, in latex it would take "2" and output "{\\bf 2}"; in html
       |                                                     ^
Maintainer: ‘Beilun Wang <bw4mw@virginia.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/QData/SIMULE
which should likely be
  https://github.com/QData/SIMULE/issues
instead.
Maintainer: ‘Martin Nahuel Garcia <garcia.martin@inta.gob.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Martin", "Nahuel"),
                    family = "Garcia",
                    role = c("aut", "cre"),
                    email = "garcia.martin@inta.gob.ar")
as necessary.
Maintainer: ‘Nikos Sidiropoulos <nikos.sidiro@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rick Dale <racdale@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rick",
                      family = "Dale",
                      role = c("aut", "cre"),
                      email = "racdale@gmail.com"),
               person(given = c("Harish", "S."),
                      family = "Bhat",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate-effect-sizes.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘debug.R’
Maintainer: ‘Boxiang Liu <jollier.liu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Boxiang",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "jollier.liu@gmail.com")
as necessary.
Maintainer: ‘Federico Vivaldi <federico-vivaldi@virgilio.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Federico", "Vivaldi;", "Tommaso"),
                      family = "Lomonaco",
                      role = "aut"),
               person(given = "Federico",
                      family = "Vivaldi",
                      role = "cre",
                      email = "federico-vivaldi@virgilio.it"))
as necessary.
checkRd: (-1) sim.bdh.age.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:70: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Oscar Garcia <garcia@dasometrics.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oscar",
                    family = "Garcia",
                    role = c("aut", "cre"),
                    email = "https://orcid.org/0000-0002-8995-1341")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Jedrzej S. Bojanowski <jedrzej.bojanowski@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jedrzej", "S."),
                    family = "Bojanowski",
                    role = c("aut", "cre"),
                    email = "jedrzej.bojanowski@gmail.com")
as necessary.
Maintainer: ‘F Scott Dahlgren <fdahlgr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("F", "Scott"),
                      family = "Dahlgren",
                      role = c("aut", "cre"),
                      email = "fdahlgr@gmail.com"),
               person(given = c("Ivo", "M"),
                      family = "Foppa",
                      role = "aut"))
as necessary.
Maintainer: ‘Clement Benard <clement.benard5@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Clement",
                      family = "Benard",
                      role = c("aut", "cre"),
                      email = "clement.benard5@gmail.com"),
               person(given = c("Marvin", "N."),
                      family = "Wright",
                      role = c("ctb", "cph")))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Mélanie Huchon <melanie.huchon@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boris",
                      family = "Hejblum",
                      role = "aut"),
               person(given = "Mélanie",
                      family = "Huchon",
                      role = c("aut", "cre"),
                      email = "melanie.huchon@u-bordeaux.fr"))
as necessary.
Maintainer: ‘Hyunseung Kang <hyunseung@stat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hyunseung",
                    family = "Kang",
                    role = c("aut", "cre"),
                    email = "hyunseung@stat.wisc.edu")
as necessary.
checkRd: (-1) rawCCD.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{distr.type}{school district type (constructed for illustration purposes; (values={"A", "B", "C", "D"})).}
       |                                                                                          ^
checkRd: (-1) selectMatch.Rd:61: Lost braces; missing escapes or markup?
    61 | \item{replacementUnitsFilename}{character; csv filename for saving {unit:replacement} directory when writeOut == TRUE; default = "replacementUnits.csv"}
       |                                                                    ^
checkRd: (-1) selectMatch.Rd:63: Lost braces; missing escapes or markup?
    63 | \item{subUnitTableFilename}{character; csv filename for saving {unit:replacement} directory when writeOut == TRUE; default = "subUnitTable.csv"}
       |                                                                ^
checkRd: (-1) selectMatch.Rd:66: Lost braces; missing escapes or markup?
    66 | list with: 1) table of the form: {selected unit i: (unit i replacements)}, 2) table of the form: {potential unit i:(unit i sub-units)}, 3) balance diagnostics.
       |                                  ^
checkRd: (-1) selectMatch.Rd:66: Lost braces; missing escapes or markup?
    66 | list with: 1) table of the form: {selected unit i: (unit i replacements)}, 2) table of the form: {potential unit i:(unit i sub-units)}, 3) balance diagnostics.
       |                                                                                                  ^
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Phillip", "B."),
                    family = "Nicol",
                    role = c("aut", "cre"),
                    email = "philnicol740@gmail.com")
as necessary.
Maintainer: ‘Jonas Stein <news@jonasstein.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonas",
                      family = "Stein",
                      role = c("aut", "cre"),
                      email = "news@jonasstein.de"),
               person(given = "Ben",
                      family = "Tupper",
                      role = "aut"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Found the following significant warnings:
  smooth.cpp:36:32: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  smooth.cpp:37:32: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sits.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
checkRd: (-1) ss.cc.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ss.ci.Rd:26: Lost braces
    26 | \item{alpha}{The eqn{\\alpha} error used to compute the \eqn{100*(1-\\alpha)\%} confidence interval}
       |                     ^
checkRd: (-1) ss.rr.Rd:84: Lost braces; missing escapes or markup?
    84 | $MS_{factor}/MS_{interaction}$, e.g. in appendix A of AIAG MSA manual, 
       |     ^
checkRd: (-1) ss.rr.Rd:84: Lost braces; missing escapes or markup?
    84 | $MS_{factor}/MS_{interaction}$, e.g. in appendix A of AIAG MSA manual, 
       |                 ^
checkRd: (-1) ss.rr.Rd:87: Lost braces; missing escapes or markup?
    87 | F test is performed as $MS_{factor}/MS_{equipment}$, i.e., repeatability.
       |                            ^
checkRd: (-1) ss.rr.Rd:87: Lost braces; missing escapes or markup?
    87 | F test is performed as $MS_{factor}/MS_{equipment}$, i.e., repeatability.
       |                                        ^
Author field differs from that derived from Authors@R
  Author:    ‘Sean Kross [aut], Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Fred Hutchinson Cancer Center [fnd] (007ps6h72)’
  Authors@R: ‘Sean Kross [aut], Scott Chamberlain [aut, cre] (ORCID: <https://orcid.org/0000-0003-1444-9135>), Fred Hutchinson Cancer Center [fnd] (ROR: <https://ror.org/007ps6h72>)’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘SiZer.R’
Maintainer: ‘Joe Roberts <jorobert@tibco.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("TIBCO", "Software"),
                      family = "Inc.",
                      role = "aut"),
               person(given = "Joe",
                      family = "Roberts",
                      role = "cre",
                      email = "jorobert@tibco.com"))
as necessary.
Maintainer: ‘Seunggeun (Shawn) Lee <lee7801@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut",
                      comment = "Shawn"),
               person(given = "Zhangchen",
                      family = "Zhao",
                      role = "aut"),
               person(given = c("with", "contributions", "from", "Larisa"),
                      family = "Miropolsky",
                      role = "aut"),
               person(given = "Michael",
                      family = "Wu",
                      role = "aut"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "cre",
                      email = "lee7801@snu.ac.kr",
                      comment = "Shawn"))
as necessary.
Maintainer: ‘Chun Fung Kwok <jkwok@svi.edu.au>’

The BugReports field in DESCRIPTION has
  https://github.com/kcf-jackson/sketch
which should likely be
  https://github.com/kcf-jackson/sketch/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ext-annotate_expr.R’
Maintainer: ‘David Scott <d.scott@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Scott",
                      role = c("aut", "cre"),
                      email = "d.scott@auckland.ac.nz"),
               person(given = "Fiona",
                      family = "Grimson",
                      role = "aut"))
as necessary.
Maintainer: ‘Hanmo Li <hanmo@pstat.ucsb.edu>’

The Description field contains
  Mengyang Gu (2023), <arXiv:2310.18611>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Patchanok Srisuradetchai <s.patchanok@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Patchanok",
                    family = "Srisuradetchai",
                    role = c("aut", "cre"),
                    email = "s.patchanok@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Ski.Mack.Rd’:
    \keyword{block designs, missing values}
Maintainer: ‘Guang Yang <gyang274@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guang",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "gyang274@gmail.com")
as necessary.
Found the following significant warnings:
  matrix_minmax.cpp:13:10: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  matrix_minmax.cpp:17:16: warning: ‘elem_type arma::Base<elem_type, derived>::min(arma::uword&) const [with elem_type = double; derived = arma::subview_elem1<double, arma::Mat<unsigned int> >; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  matrix_minmax.cpp:33:10: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  matrix_minmax.cpp:37:16: warning: ‘elem_type arma::Base<elem_type, derived>::max(arma::uword&) const [with elem_type = double; derived = arma::subview_elem1<double, arma::Mat<unsigned int> >; arma::uword = unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  skm.cpp:396:17: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  skm.cpp:483:17: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  skm_gdp.cpp:57:35: warning: ‘eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/skm.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Matt Kaye <mrkaye97@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bob",
                      family = "Rudis",
                      role = c("aut", "cre")),
               person(given = "Jay",
                      family = "Jacobs",
                      role = "ctb"),
               person(given = "David",
                      family = "Severski",
                      role = "ctb"),
               person(given = "Quinn",
                      family = "Weber",
                      role = "ctb"),
               person(given = "Konrad",
                      family = "Karczewski",
                      role = "ctb"),
               person(given = "Shinya",
                      family = "Uryu",
                      role = "ctb"),
               person(given = "Gregory",
                      family = "Jefferis",
                      role = "ctb"),
               person(given = "Ed",
                      family = "Niles",
                      role = "ctb"),
               person(given = "Rick",
                      family = "Saporta",
                      role = "ctb"),
               person(given = "Jonathan",
                      family = "Sidi",
                      role = c("aut", "ctb")),
               person(given = "Matt",
                      family = "Kaye",
                      role = c("aut", "ctb", "cre"),
                      email = "mrkaye97@gmail.com"),
               person(given = "Xinye",
                      family = "Li",
                      role = "ctb"),
               person(given = "Andrie",
                      family = "de Vries",
                      role = c("aut", "ctb")))
as necessary.
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The Description field contains
  <arXiv:2007.00529>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/unina-sfere/slasso
which should likely be
  https://github.com/unina-sfere/slasso/issues
instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/slasso.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) outliers.hdts.Rd:44: Lost braces; missing escapes or markup?
    44 |   \item I.cov.rob - The matrix (V'GnV)^{-1} used to compute the statistics to detect the idiosyncratic outliers.
       |                                        ^
Maintainer: ‘Ilana Trumble <itrumble@unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Hudgens",
                      role = "aut"),
               person(given = "Ilana",
                      family = "Trumble",
                      role = c("aut", "cre"),
                      email = "itrumble@unc.edu"),
               person(given = "Andrew",
                      family = "Allmon",
                      role = "aut"))
as necessary.
Maintainer: ‘Muntashir-Al-Arefin <sheen4783@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Muntashir-Al-Arefin",
                      role = c("aut", "cre"),
                      email = "sheen4783@gmail.com"),
               person(given = c("Prof.", "Md.", "Ayub"),
                      family = "Al.",
                      role = "aut"))
as necessary.
Maintainer: ‘Christine Blume <christine.blume@sbg.ac.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Berwin A Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "F.L."),
                      family = "Ramsey",
                      role = "aut"),
               person(given = c("D.W.", "Schafer;", "modifications", "by", "Daniel", "W."),
                      family = "Schafer",
                      role = "aut"),
               person(given = "Jeannie",
                      family = "Sifneos",
                      role = "aut"),
               person(given = c("Berwin", "A.", "Turlach;", "vignettes", "contributed", "by", "Nicholas"),
                      family = "Horton",
                      role = "aut"),
               person(given = "Kate",
                      family = "Aloisio",
                      role = "aut"),
               person(given = "Ruobing",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("with", "corrections", "by", "Randall"),
                      family = "Pruim",
                      role = "aut"),
               person(given = c("Berwin", "A"),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
Maintainer: ‘Berwin A Turlach <Berwin.Turlach@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Original", "by", "F.L."),
                      family = "Ramsey",
                      role = "aut"),
               person(given = c("D.W.", "Schafer;", "modifications", "by", "Daniel", "W."),
                      family = "Schafer",
                      role = "aut"),
               person(given = "Jeannie",
                      family = "Sifneos",
                      role = "aut"),
               person(given = c("Berwin", "A.", "Turlach;", "vignettes", "contributed", "by", "Nicholas"),
                      family = "Horton",
                      role = "aut"),
               person(given = "Linda",
                      family = "Loi",
                      role = "aut"),
               person(given = "Kate",
                      family = "Aloisio",
                      role = "aut"),
               person(given = "Ruobing",
                      family = "Zhang",
                      role = "aut"),
               person(given = c("with", "corrections", "by", "Randall"),
                      family = "Pruim",
                      role = "aut"),
               person(given = c("Berwin", "A"),
                      family = "Turlach",
                      role = "cre",
                      email = "Berwin.Turlach@gmail.com"))
as necessary.
Maintainer: ‘Shan Ba <shanbatr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shan",
                    family = "Ba",
                    role = c("aut", "cre"),
                    email = "shanbatr@gmail.com")
as necessary.
File ‘slider/libs/slider.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Everaldo Freitas Guedes <efgestatistico@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/efguedes/SlidingWindows
which should likely be
  https://github.com/efguedes/SlidingWindows/issues
instead.
checkRd: (-1) fit_slim.Rd:24: Lost braces; missing escapes or markup?
    24 | sum(x' V^{-1} (y - x beta)) = 0 as the covariance V tends from V[, , 1] +
       |          ^
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Emmanuel Caron <emmanuelcaron3@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emmanuel",
                      family = "Caron",
                      role = c("aut", "cre"),
                      email = "emmanuelcaron3@gmail.com"),
               person(given = "Jérôme",
                      family = "Dedecker",
                      role = "aut"),
               person(given = "Bertrand",
                      family = "Michel",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1906.06583>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wesley Burr <wesley.burr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wesley",
                      family = "Burr",
                      role = c("aut", "cre"),
                      email = "wesley.burr@gmail.com"),
               person(given = c("with", "contributions", "from", "Karim"),
                      family = "Rahim",
                      role = "aut"))
as necessary.
checkRd: (-1) slp-package.Rd:38: Escaped LaTeX specials: \&
Author field differs from that derived from Authors@R
  Author:    ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (JOSS reviewer, <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (JOSS reviewer, <https://orcid.org/0000-0001-9754-0393>)’
  Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-9754-0393>)’
Maintainer: ‘Abhishek Nandy <nandy006@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abhishek",
                    family = "Nandy",
                    role = c("aut", "cre"),
                    email = "nandy006@umn.edu")
as necessary.
Maintainer: ‘William Artman <William_Artman@URMC.Rochester.edu>’

The Description field contains
  outcomes. Please see Artman (2020) <arXiv:2008.02341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Przemyslaw",
                    family = "Biecek",
                    role = c("aut", "cre"),
                    email = "przemyslaw.biecek@gmail.com")
as necessary.
checkRd: (-1) cities_lon_lat.Rd:6: Lost braces
     6 | A subset of world.cities{maps}. Extracted in order to shink number of dependencies. 
       |                         ^
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Dipankar Bandyopadhyay <bandyopd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jing",
                      family = "Xu",
                      role = "aut"),
               person(given = "Dipankar",
                      family = "Bandyopadhyay",
                      role = c("aut", "cre"),
                      email = "bandyopd@gmail.com"),
               person(given = "Douglas",
                      family = "Azevedo",
                      role = "aut"),
               person(given = "Bibhas",
                      family = "Chakraborty",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1902.09386>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jun Chen <Chen.Jun2@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "Chen.Jun2@mayo.edu"),
               person(given = "Ehsan",
                      family = "Behnam",
                      role = "aut",
                      email = "behnamgh@usc.edu"))
as necessary.
Maintainer: ‘Remko Duursma <remkoduursma@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Warton",
                      role = "aut",
                      email = "David.Warton@unsw.edu.au"),
               person(given = "Remko",
                      family = "Duursma",
                      role = c("aut", "cre"),
                      email = "remkoduursma@gmail.com"),
               person(given = "Daniel",
                      family = "Falster",
                      role = "aut"),
               person(given = "Sara",
                      family = "Taskinen.",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Herman Jopia <hjopia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Herman",
                    family = "Jopia",
                    role = c("aut", "cre"),
                    email = "hjopia@gmail.com")
as necessary.
Maintainer: ‘Tobias Verbeke <tobias.verbeke@openanalytics.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tobias",
                      family = "Verbeke",
                      role = c("aut", "cre"),
                      email = "tobias.verbeke@openanalytics.eu"),
               person(given = c("based", "on", "datasets", "provided", "on", "the", "book's"),
                      family = "website",
                      role = "aut"))
as necessary.
Malformed Title field: should not end in a period.
checkRd: (-1) customerRetentionDemographics.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) customerRetentionDemographics.Rd:11: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:12: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:13: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:15: Escaped LaTeX specials: \$
Maintainer: ‘Ed Merkle <merklee@missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ed",
                      family = "Merkle",
                      role = c("aut", "cre"),
                      email = "merklee@missouri.edu"),
               person(given = "Michael",
                      family = "Smithson",
                      role = "aut"))
as necessary.
checkRd: (-1) trlong.Rd:17: Lost braces
    17 |     \item{\code{resp}}{a factor indicating the transport mode choice, and \code{B} denotes taking the bus, code{D} denotes driving one's own vehicle, \code{F} denotes getting a ride with a friend, \code{O} denotes other, and \code{W} denotes walking}
       |                                                                                                                ^
checkRd: (-1) smdocker_log.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:35-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                  ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                            ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                          ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                                    ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                              ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                        ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                      ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                                ^
Maintainer: ‘Qian Zhu <zqian@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qian",
                      family = "Zhu",
                      role = c("aut", "cre"),
                      email = "zqian@jimmy.harvard.edu"),
               person(given = "Guo-Cheng",
                      family = "Yuan",
                      role = "aut"))
as necessary.
Maintainer: ‘Darren Wilkinson <darrenjwilkinson@btinternet.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Darren",
                    family = "Wilkinson",
                    role = c("aut", "cre"),
                    email = "darrenjwilkinson@btinternet.com")
as necessary.
Maintainer: ‘Paul Walter <paul.w@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Walter",
                    role = c("aut", "cre"),
                    email = "paul.w@gmx.net")
as necessary.
Maintainer: ‘Alexey Shipunov <dactylorhiza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Shipunov",
                    role = c("aut", "cre"),
                    email = "dactylorhiza@gmail.com",
                    comment = "with help of Eugenij Altshuler")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Siddharth Jain <siddharthjain242@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siddharth",
                      family = "Jain",
                      role = c("aut", "cre"),
                      email = "siddharthjain242@gmail.com"),
               person(given = "Prabhanjan",
                      family = "Tattar",
                      role = "aut"))
as necessary.
Maintainer: ‘Adam Lund <adam.lund@math.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Lund",
                    role = c("aut", "cre"),
                    email = "adam.lund@math.ku.dk")
as necessary.

The Description field contains
  Mogensen and Hansen (2019) <arXiv:1805.02407>. Currently Lasso and SCAD
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SMMA.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) SMMA.Rd:115: Lost braces
   115 |  is the empirical explained variance from \cite{Meinshausen and B{u}hlmann, 2015}.  See \cite{Lund et al., 2020} for more details and references.
       |                                                                  ^
checkRd: (-1) SMMA.Rd:170: Lost braces
   170 | Meinshausen, N and P. B{u}hlmann (2015). Maximin effects in inhomogeneous large-scale data.
       |                        ^
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SMME.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Nicolas Vergne <nicolas.vergne@univ-rouen.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vlad", "Stefan"),
                      family = "Barbu",
                      role = "aut"),
               person(given = "Caroline",
                      family = "Berard",
                      role = "aut"),
               person(given = "Dominique",
                      family = "Cellier",
                      role = "aut"),
               person(given = "Mathilde",
                      family = "Sautreuil",
                      role = "aut"),
               person(given = "Nicolas",
                      family = "Vergne",
                      role = c("aut", "cre"),
                      email = "nicolas.vergne@univ-rouen.fr"))
as necessary.
checkRd: (-1) estimMk.Rd:44: Lost braces; missing escapes or markup?
    44 | estimMk returns the transition probability matrix of size (S^{k})xS (with S = length(E)) 
       |                                                              ^
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smmR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) getKernel.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getKernel.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Aldo M. Garay <medina_garay@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aldo", "M."),
                      family = "Garay",
                      role = c("aut", "cre"),
                      email = "medina_garay@yahoo.com"),
               person(given = c("Monique", "Bettio"),
                      family = "Massuia",
                      role = "aut",
                      email = "moniquemassuia@gmail.com"),
               person(given = "Victor",
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"))
as necessary.
Maintainer: ‘Qingan Sun <quinsun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingan",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "quinsun@gmail.com"),
               person(given = "Xiaojun",
                      family = "Li",
                      role = "aut"),
               person(given = c("James", "C"),
                      family = "Sacchettini",
                      role = "aut"))
as necessary.
checkRd: (-1) getGlobalOptimum.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getGlobalOptimum.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getGlobalOptimum.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getLocalOptimum.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getLocalOptimum.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getLocalOptimum.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smoof_function.Rd:10: Lost braces
    10 | or code{smoof_multi_objective_function}. Both single- and multi-objective functions share the following attributes.
       |        ^
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georg",
                      family = "Hahn",
                      role = c("aut", "cre"),
                      email = "ghahn@hsph.harvard.edu"),
               person(given = c("Sharon", "M."),
                      family = "Lutz",
                      role = "ctb"),
               person(given = "Nilanjana",
                      family = "Laha",
                      role = "ctb"),
               person(given = "Christoph",
                      family = "Lange",
                      role = "ctb"))
as necessary.
Maintainer: ‘Nicholas Hamilton <n.hamilton@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Hamilton",
                    role = c("aut", "cre"),
                    email = "n.hamilton@unsw.edu.au")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  smoother.Rd: TTR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Christian Hennig <christian.hennig@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Hennig",
                    role = c("aut", "cre"),
                    email = "christian.hennig@unibo.it")
as necessary.
Found the following significant warnings:
  ssGeneral.cpp:20:31: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  ssGeneral.cpp:28:31: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smooth.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Chanwoo Lee <chanwoo.lee@wisc.edu>’

The Description field contains
  estimation with unknown permutations" <arXiv:2111.04681>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
Found the following files/directories:
  ‘my_new_social_media_plot.png’
Maintainer: ‘Adrian Bowman <adrian.bowman@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrian",
                      family = "Bowman",
                      role = c("aut", "cre"),
                      email = "adrian.bowman@glasgow.ac.uk"),
               person(given = c("Adelchi", "Azzalini.", "Ported", "to", "R", "by", "B.", "D.", "Ripley", "up", "to", "version"),
                      family = "2.0",
                      role = "aut",
                      email = "ripley@stats.ox.ac.uk"),
               person(given = c("version", "2.1", "by", "Adrian"),
                      family = "Bowman",
                      role = "aut"),
               person(given = "Adelchi",
                      family = "Azzalini",
                      role = "aut"),
               person(given = c("version", "2.2", "by", "Adrian"),
                      family = "Bowman.",
                      role = "aut"))
as necessary.
Maintainer: ‘Dimitris Kavroudakis <dimitris123@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Kavroudakis",
                    role = c("aut", "cre"),
                    email = "dimitris123@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  evol_auc.Rd: ggplot
  explore_table.Rd: flextable
  probs_pred.Rd: ggplot
  sMSROC_plot.Rd: plotROC
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Gabriel Loewinger <gloewinger@gmail.com>’

The Description field contains
  Loewinger et al., (2022) <arXiv:2212.08697>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Wujuan Zhong <zhongwujuan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wujuan",
                    family = "Zhong",
                    role = c("aut", "cre"),
                    email = "zhongwujuan@gmail.com")
as necessary.
Maintainer: ‘Samuel Blanck <samuel.blanck@univ-lille.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guillemette",
                      family = "Marot",
                      role = c("aut", "cre")),
               person(given = "Samuel",
                      family = "Blanck",
                      role = "cre",
                      email = "samuel.blanck@univ-lille.fr"))
as necessary.
Maintainer: ‘Hector Haffenden <haffendenh@cardiff.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hector",
                    family = "haffenden",
                    role = c("aut", "cre"),
                    email = "haffendenh@cardiff.ac.uk")
as necessary.
checkRd: (-1) SnakesAndLaddersGame.Rd:25: Lost braces; missing escapes or markup?
    25 | {Hector Haffenden} {haffendenh@cardiff.ac.uk}
       |                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sk.R’ ‘sk_export.R’ ‘sk_index.R’ ‘sk_pars.R’ ‘sk_plot.R’
    ‘sk_plot.Rd’ ‘sk_sub.Rd’ ‘sk_var.Rd’ ‘sk_var_mult.Rd’
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                  ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                           ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                                      ^
checkRd: (-1) sk_GLS.Rd:40: Lost braces; missing escapes or markup?
    40 | Operations with V^{-1} are computed using the factorization \code{fac} (see \code{sk_var}), or
       |                   ^
checkRd: (-1) sk_LL.Rd:37: Lost braces; missing escapes or markup?
    37 | \code{quad_form} is z^T V^{-1} z, for the observed response vector z, which is constructed
       |                           ^
checkRd: (-1) sk_var.Rd:41: Lost braces; missing escapes or markup?
    41 | returns the quadratic form X^T V^{-1} X.
       |                                  ^
checkRd: (-1) sk_var.Rd:33: Lost braces; missing escapes or markup?
    33 | either matrix \code{V}, or X^T V^{-1} X, or a factorization ('chol' or 'eigen')
       |                                  ^
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Takayuki Kawashima <kawashima@c.titech.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Toshihiro",
                      family = "Abe",
                      role = "aut",
                      email = "abetosh@ss.nanzan-u.ac.jp"),
               person(given = "Hironori",
                      family = "Fujisawa",
                      role = "aut",
                      email = "fujisawa@ism.ac.jp"),
               person(given = "Takayuki",
                      family = "Kawashima",
                      role = c("aut", "cre"),
                      email = "kawashima@c.titech.ac.jp"))
as necessary.
Maintainer: ‘Benjamin Brew <goldenberglab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bo",
                      family = "Wang",
                      role = "aut"),
               person(given = "Aziz",
                      family = "Mezlini",
                      role = "aut"),
               person(given = "Feyyaz",
                      family = "Demir",
                      role = "aut"),
               person(given = "Marc",
                      family = "Fiume",
                      role = "aut"),
               person(given = "Zhuowen",
                      family = "Tu",
                      role = "aut"),
               person(given = "Michael",
                      family = "Brudno",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Haibe-Kains",
                      role = "aut"),
               person(given = "Anna",
                      family = "Goldenberg",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Brew",
                      role = "cre",
                      email = "goldenberglab@gmail.com"))
as necessary.
Maintainer: ‘Wei Sun <sunweisurrey8@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "sunweisurrey8@gmail.com"),
               person(given = "Xingye",
                      family = "Qiao",
                      role = "aut"),
               person(given = "Guang",
                      family = "Cheng",
                      role = "aut"))
as necessary.
Maintainer: ‘Jochen Knaus <jo@imbi.uni-freiburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jochen",
                    family = "Knaus",
                    role = c("aut", "cre"),
                    email = "jo@imbi.uni-freiburg.de")
as necessary.
Maintainer: ‘Svetlana Eden <svetlana.eden@vanderbilt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Svetlana",
                    family = "Eden",
                    role = c("aut", "cre"),
                    email = "svetlana.eden@vanderbilt.edu")
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = c("A.", "J."),
                      family = "Rossini",
                      role = "aut"))
as necessary.
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luke",
                      family = "Tierney",
                      role = c("aut", "cre"),
                      email = "luke-tierney@uiowa.edu"),
               person(given = c("A.", "J."),
                      family = "Rossini",
                      role = "aut"),
               person(given = "Na",
                      family = "Li",
                      role = "aut"),
               person(given = "H.",
                      family = "Sevcikova",
                      role = "aut"))
as necessary.
Maintainer: ‘Matteo Sesia <msesia@stanford.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SNPknock.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) knockoffGenotypes.Rd:32: Lost braces; missing escapes or markup?
    32 | This function efficiently constructs group-knockoffs of {0,1,2} variables distributed
       |                                                         ^
checkRd: (-1) knockoffGenotypes.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{X}{a {0,1,2} matrix of size n-by-p containing the original variables.}
       |            ^
checkRd: (-1) knockoffGenotypes.Rd:29: Lost braces; missing escapes or markup?
    29 | A {0,1,2} matrix of size n-by-p containing the knockoff variables.
       |   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gtable_ld_associations_combine.Rd’ ‘gtable_ld_grobs.Rd’
Maintainer: ‘David Hervas <ddhervas@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hervas",
                    role = c("aut", "cre"),
                    email = "ddhervas@yahoo.es")
as necessary.
checkRd: (-1) plot.selm.Rd:101: Lost braces
   101 | data. Default value for code{which} is \code{2:4} if \code{p>1}, otherwise
       |                             ^
Maintainer: ‘Luis Benavides <luisbv@tec.mx>’

The Description field contains
  (2019) <arXiv:1901.04443>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alireza Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = "aut"),
               person(given = "Asad",
                      family = "Hasan",
                      role = "aut"),
               person(given = "Marshall",
                      family = "Jiang",
                      role = "aut"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"),
               person(given = "Alireza",
                      family = "Mahani",
                      role = "cre",
                      email = "alireza.s.mahani@gmail.com"))
as necessary.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bill",
                      family = "Venables",
                      role = c("aut", "cre"),
                      email = "bill.venables@gmail.com"),
               person(given = c("based", "on", "original", "code", "by", "David"),
                      family = "Brahm",
                      role = "aut"))
as necessary.
Found the following calls to attach():
File ‘SOAR/R/SOAR.R’:
  attach(NULL, pos, basename(directory))
See section ‘Good practice’ in ‘?attach’.
Found the following files/directories:
  ‘.R_Test’
Maintainer: ‘Maikol Solís <maikol.solis@ucr.ac.cr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maikol",
                    family = "Solís",
                    role = c("aut", "cre"),
                    email = "maikol.solis@ucr.ac.cr")
as necessary.

The Description field contains
  M. (2018) <arXiv:1803.03333>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘PowerRelation.R’ ‘SocialRanking.R’ ‘copeland.R’ ‘doRanking.Rd’
    ‘elementLookup.Rd’ ‘generator.R’ ‘makePowerRelationMonotonic.R’
Maintainer: ‘Tom Pike <tpike@lincoln.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Pike",
                    role = c("aut", "cre"),
                    email = "tpike@lincoln.ac.uk")
as necessary.
Maintainer: ‘Kieran Healy <kjhealy@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                          ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                        ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                                     ^
Maintainer: ‘Yang Li <yangli.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "yangli.stat@gmail.com"),
               person(given = c("Jun", "S."),
                      family = "Liu",
                      role = "aut"))
as necessary.
checkRd: (-1) s_soda_pred.Rd:8: Lost braces; missing escapes or markup?
     8 | S-SODA assumes within each slice the X vector follow multivariate normal distribution. This function predicts the response y by reverting the P(X | slice(y)) to P(slice(y) | X), and estimates the E(y|X) as sum_{h} E(y | slice(y)=h, X) P (slice(y)=h | X)
       |                                                                                                                                                                                                                   ^
checkRd: (-1) db_compact.Rd:41: Lost braces; missing escapes or markup?
    41 | database structure will be set to true. See GET /{db}. You can also obtain a list of
       |                                                  ^
Maintainer: ‘Luis Diaz-Garcia <diazgarcia@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luis",
                    family = "Diaz-Garcia",
                    role = c("aut", "cre"),
                    email = "diazgarcia@wisc.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jose D. Loera <jose.loera@inegi.org.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jose", "D."),
                    family = "Loera",
                    role = c("aut", "cre"),
                    email = "jose.loera@inegi.org.mx")
as necessary.
Maintainer: ‘G. Peters <peters.activities@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "G.",
                    family = "Peters",
                    role = c("aut", "cre"),
                    email = "peters.activities@gmail.com",
                    comment = "Ed.")
as necessary.
Maintainer: ‘Seungjun Ahn <seungjun.ahn@mountsinai.org>’

The Description field contains
  <arXiv:2303.13702v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dione Pereira Cardoso <cardoso.dione@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘KFactor.Rd’:
    \keyword{Nomograph; Particle-size; Organic matter; [TRUNCATED]
  File ‘RFactor_calc.Rd’:
    \keyword{Erosivity index; R-Factor; Universal Soil [TRUNCATED]
  File ‘RFactor_est.Rd’:
    \keyword{Erosivity index; R-Factor; Universal Soil [TRUNCATED]
  File ‘SoilConservation.Rd’:
    \keyword{Soil Conservation; Erosivity index; R-Fac [TRUNCATED]
  File ‘SoilLoss.Rd’:
    \keyword{Soil Loss; Water Erosion; R Factor; K Fac [TRUNCATED]
Maintainer: ‘Anderson Rodrigo da Silva <anderson.agro@hotmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) llwrPTF.Rd:7: Escaped LaTeX specials: \&
Maintainer: ‘Yi Yang <yi.yang6@mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenglong",
                      family = "Ye",
                      role = "aut",
                      email = "yexxx323@umn.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yi.yang6@mcgill.ca"),
               person(given = "Yuhong",
                      family = "Yang",
                      role = "aut",
                      email = "yyang@stat.umn.edu"))
as necessary.
Maintainer: ‘Carlos A. Sierra <csierra@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "A."),
                      family = "Sierra",
                      role = c("aut", "cre"),
                      email = "csierra@bgc-jena.mpg.de"),
               person(given = "Markus",
                      family = "Mueller",
                      role = "aut"))
as necessary.
Maintainer: ‘Emanuele Cordano <emanuele.cordano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emanuele",
                      family = "Cordano",
                      role = c("aut", "cre"),
                      email = "emanuele.cordano@gmail.com"),
               person(given = "Daniele",
                      family = "Andreis",
                      role = "aut"),
               person(given = "Fabio",
                      family = "Zottele",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhaoliang He <1024299329@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaoliang",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "1024299329@qq.com"),
               person(given = "Linsui",
                      family = "Deng",
                      role = "aut",
                      email = "1175520015@qq.com"),
               person(given = "Kaiwen",
                      family = "Tan",
                      role = "aut",
                      email = "913596401@qq.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘meteoReaders.R’
Maintainer: ‘Jasper Van doninck <vandoninck.jasper@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jasper",
                    family = "Van doninck",
                    role = c("aut", "cre"),
                    email = "vandoninck.jasper@gmail.com")
as necessary.
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bijan",
                    family = "Seyednasrollah",
                    role = c("aut", "cre"),
                    email = "bijan.s.nasr@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘DayOfYear.Rd’:
    \keyword{DOY,}
checkRd: (-1) solr_mlt.Rd:70: Lost braces; missing escapes or markup?
    70 | TermVector DEFAULT_FIELD_NAMES = new String[] {"contents"}
       |                                               ^
checkRd: (-1) solve_pH_from_AT.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:93: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Maintainer: ‘livio finos <livio@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "livio",
                    family = "finos",
                    role = c("aut", "cre"),
                    email = "livio@stat.unipd.it")
as necessary.
Maintainer: ‘Andreas Dominik <andreas.dominik@mni.thm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Dominik",
                    role = c("aut", "cre"),
                    email = "andreas.dominik@mni.thm.de")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  somsp.Rd: kohonen
  somspa.Rd: kohonen, som
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Charles Berry <ccberry@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles",
                    family = "Berry",
                    role = c("aut", "cre"),
                    email = "ccberry@ucsd.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘soundSpeed.Rd’
Maintainer: ‘Willem Daniel Schutte <wd.schutte@nwu.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Willem", "Daniel"),
                    family = "Schutte",
                    role = c("aut", "cre"),
                    email = "wd.schutte@nwu.ac.za")
as necessary.
Maintainer: ‘"Zeb Burke-Conte" <zmbc@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zeb",
                      family = "Burke-Conte",
                      role = "aut"),
               person(given = "\"Zeb",
                      family = "Burke-Conte\"",
                      role = "cre",
                      email = "zmbc@uw.edu"))
as necessary.
Found the following significant warnings:
  sorcering.cpp:2294:96: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = double; T1 = arma::eGlue<arma::subview_elem1<double, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find> >, arma::subview_elem1<double, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find> >, arma::eglue_div>; out_eT = double; typename arma::arma_not_cx<in_eT>::result = double]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
  sorcering.cpp:2329:99: warning: ‘static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = double; T1 = arma::eGlue<arma::subview_elem1<double, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find> >, arma::subview_elem1<double, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find> >, arma::eglue_div>; out_eT = double; typename arma::arma_not_cx<in_eT>::result = double]’ is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/sorcering.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Weimin Zhang <zhangwm@hotmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘asrm.Rd’:
    https://doi.org/10.1111/biom.12997
  File ‘sorocs.Rd’:
    https://doi.org/10.1111/biom.12997
Maintainer: ‘Aurnov Chattopadhyay <aurnovcy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aurnov",
                    family = "Chattopadhyay",
                    role = c("aut", "cre"),
                    email = "aurnovcy@gmail.com")
as necessary.
checkRd: (-1) spe.Rd:101: Lost braces
   101 | code{spe} command; (4) \code{alpha} stores significance level as in
       |     ^
Running examples in ‘SortedEffects-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.spe
> ### Title: Plot output of 'spe' command. The x-axis limits are set to the
> ###   specified range of percentile index.
> ### Aliases: plot.spe
> 
> ### ** Examples
> 
> data("mortgage")
> fm <- deny ~ black + p_irat + hse_inc + ccred + mcred + pubrec + ltv_med +
+ ltv_high + denpmi + selfemp + single + hischl
> test <- spe(fm = fm, data = mortgage, var = "black", method = "logit",
+ us = c(2:98)/100, b = 50)
Using 1 CPUs now.
> 
> plot(x = test, main="APE and SPE of Being Black on the prob of
+ Mortgage Denial", sub="Logit Model", ylab="Change in Probability")
Error in if (lim2) { : argument is not interpretable as logical
Calls: plot -> plot.spe -> plot -> plot.default
Execution halted
checkRd: (-1) load_sorvi_data.Rd:23: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Spencer Graves <spencer.graves@prodsyse.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Spencer",
                      family = "Graves",
                      role = c("cre", "aut", "cph"),
                      email = "spencer.graves@prodsyse.com"),
               person(given = "Sundar",
                      family = "Dorai-Raj",
                      role = "aut"),
               person(given = "Romain",
                      family = "Francois",
                      role = "ctb"))
as necessary.
Maintainer: ‘Bruno Silva <bmsasilva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruno",
                    family = "Silva",
                    role = c("aut", "cre"),
                    email = "bmsasilva@gmail.com")
as necessary.
Maintainer: ‘Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "J."),
                      family = "Villanueva-Rivera",
                      role = c("aut", "cre"),
                      email = "ljvillanueva@coquipr.com"),
               person(given = c("Bryan", "C."),
                      family = "Pijanowski",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Marcelino <dmarcelino@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Marcelino",
                    role = c("aut", "cre"),
                    email = "dmarcelino@live.com")
as necessary.

The BugReports field in DESCRIPTION has
  http://github.com/danielmarcelino/soundexBR
which should likely be
  http://github.com/danielmarcelino/soundexBR/issues
instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘soundexBR.Rd’:
    http://dx.doi.org/10.2139/ssrn.2320547
Maintainer: ‘Matthew Daniel Young <my4@sanger.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "Daniel"),
                    family = "Young",
                    role = c("aut", "cre"),
                    email = "my4@sanger.ac.uk")
as necessary.
Maintainer: ‘Kevin Ushey <kevinushey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Ushey",
                    role = c("aut", "cre"),
                    email = "kevinushey@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘SouthPark_Script_Data.Rd’ ‘app_server.R’
Maintainer: ‘Matheus Dalsente Krause <krause.d.matheus@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Silvia D'Angelo <silvia.dangelo@ucd.ie>’

The Description field contains
  MCMC algorithm. See D Angelo et al. (2018) <arXiv:1803.07166> and D
  Angelo et al. (2018) <arXiv:1807.03874>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alberto Krone-Martins <algol@sim.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Krone-Martins",
                    role = c("aut", "cre"),
                    email = "algol@sim.ul.pt")
as necessary.
Maintainer: ‘Vilmantas Gegzna <GegznaV@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: /commits/master
    From: README.md
Maintainer: ‘Anne Chao <chao@stat.nthu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne",
                      family = "Chao",
                      role = c("aut", "cre"),
                      email = "chao@stat.nthu.edu.tw"),
               person(given = c("K.", "H."),
                      family = "Ma",
                      role = "aut"),
               person(given = c("T.", "C."),
                      family = "Hsieh",
                      role = "aut"),
               person(given = "Chun-Huo",
                      family = "Chiu",
                      role = "aut"))
as necessary.
Unknown package ‘earlywarnings’ in Rd xrefs
Maintainer: ‘Jose Manuel Vera Oteo <vera.josemanuel@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘geocode_cadastral.Rd’:
    \keyword{cadastre,}
    \keyword{geocoding,}
    \keyword{latitude,}
    \keyword{longitude,}
  File ‘to_number.Rd’:
    \keyword{currency,}
    \keyword{euros,}
    \keyword{money,}
  File ‘to_words.Rd’:
    \keyword{integers,}
    \keyword{money,}
    \keyword{spanish,}
Maintainer: ‘Daniela Witten <dwitten@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M."),
                      family = "Witten",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Daniela",
                      family = "Witten",
                      role = "cre",
                      email = "dwitten@u.washington.edu"))
as necessary.
Maintainer: ‘Aki Ariga <chezou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aki",
                    family = "Ariga",
                    role = c("aut", "cre"),
                    email = "chezou@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chezou/sparkavro
which should likely be
  https://github.com/chezou/sparkavro/issues
instead.
Maintainer: ‘Ramnath Vaidyanathan <ramnath.vaidya@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
checkRd: (-1) sdf_unnest.Rd:20: Lost braces
    20 | \code{a1, a2, a3}, then code{sdf_explode(df, a)} will produce output with each record replicated
       |                             ^
Maintainer: ‘Thomas Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Edgar Ruiz <edgar@rstudio.com>’

The BugReports field in DESCRIPTION has
  https://github.com/r-spark/sparkwarc
which should likely be
  https://github.com/r-spark/sparkwarc/issues
instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Alex Gibberd <a.gibberd@lancaster.ac.uk>’

The Description field contains
  <arXiv:2303.11892>. Options to use classic multivariate Kalman filter
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

The Description field contains
  classifier from Ramey et al. (2017) <arXiv:1602.01182>. Other
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jelmer Ypma <uctpjyy@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jelmer",
                    family = "Ypma",
                    role = c("aut", "cre"),
                    email = "uctpjyy@ucl.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
checkRd: (-1) Coord.to.Pointers.Rd:54: Lost braces; missing escapes or markup?
    54 | \item{triangle=TRUE}{Input \code{rows} and {cols} represent lower
       |                                            ^
checkRd: (-1) Coord.to.Pointers.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{triangle=FALSE}{Input \code{rows} and {cols} represent a full
       |                                             ^
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andrew Zammit-Mangion <andrewzm@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Takahashi_Davis.Rd’:
    \keyword{factor,}
  File ‘cholsolve.Rd’:
    \keyword{factor,}
  File ‘cholsolveAQinvAT.Rd’:
    \keyword{factor,}
checkRd: (-1) cholsolveAQinvAT.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Solve the equation X = AQ^{-1}t(A) under permutations}
       |                                  ^
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Line",
                      family = "Clemmensen",
                      role = "aut",
                      email = "lhc@imm.dtu.dk"),
               person(given = c("contributions", "by", "Max"),
                      family = "Kuhn",
                      role = "aut"),
               person(given = "Max",
                      family = "Kuhn",
                      role = "cre",
                      email = "mxkuhn@gmail.com"))
as necessary.
Maintainer: ‘Riccardo Rastelli <riccardoras@gmail.com>’

The Description field contains
  <arXiv:1808.09262>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adam B Kashlak <kashlak@ualberta.ca>’

The Description field contains
  search method outlined in Kashlak and Kong (2019) <arXiv:1705.02679>
  and in Kashlak (2019) <arXiv:1903.10988>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |    ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |             ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                      ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                   ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                            ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                                     ^
Maintainer: ‘Joseph Mihaljevic <Joseph.Mihaljevic@nau.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  model_parallel.Rd: future_lapply
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lax Chan <laxchan77@gmail.com>’

The Description field contains
  W., Vincent, K (2019) <arXiv:1902.05156>. This package explicitly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘N. Benjamin Erichson <erichson@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("N.", "Benjamin"),
                      family = "Erichson",
                      role = c("aut", "cre"),
                      email = "erichson@uw.edu"),
               person(given = "Peng",
                      family = "Zheng",
                      role = "aut"),
               person(given = "Sasha",
                      family = "Aravkin",
                      role = "aut"))
as necessary.

The Description field contains
  Erichson et al. (2018) <arXiv:1804.00341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marc Ratkovic <ratkovic@princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Ratkovic",
                      role = c("aut", "cre"),
                      email = "ratkovic@princeton.edu"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "aut"))
as necessary.
checkRd: (-1) plot.sparsereg.Rd:22-23: Lost braces
    22 | \env{main1, main2, main3}{
       |                          ^
checkRd: (-1) plot.sparsereg.Rd:25-27: Lost braces
    25 | \env{xlabel}{
       |             ^
checkRd: (-1) plot.sparsereg.Rd:29-31: Lost braces
    29 | \env{plot.one}{
       |               ^
checkRd: (-1) summary.sparsereg.Rd:27-29: Lost braces
    27 | \env{interval}{
       |               ^
checkRd: (-1) summary.sparsereg.Rd:31-33: Lost braces
    31 | \env{ci}{
       |         ^
checkRd: (-1) summary.sparsereg.Rd:35-37: Lost braces
    35 | \env{order}{
       |            ^
checkRd: (-1) summary.sparsereg.Rd:39-41: Lost braces
    39 | \env{normal}{
       |             ^
checkRd: (-1) summary.sparsereg.Rd:43-45: Lost braces
    43 | \env{select}{
       |             ^
checkRd: (-1) summary.sparsereg.Rd:47-48: Lost braces
    47 | \env{printit}{
       |              ^
checkRd: (-1) summary.sparsereg.Rd:50-52: Lost braces
    50 | \env{stage}{
       |            ^
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The Description field contains
  <arXiv:1701.06967>. In the model, a regularization term is added to the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/GjjvdBurg/SparseStep
which should likely be
  https://github.com/GjjvdBurg/SparseStep/issues
instead.
Maintainer: ‘Marius Placzek <marius.placzek@med.uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "T.",
                      family = "Asendorf",
                      role = "aut"),
               person(given = "R.",
                      family = "Gera",
                      role = "aut"),
               person(given = "S.",
                      family = "Islam",
                      role = "aut"),
               person(given = "M.",
                      family = "Harden",
                      role = "aut"),
               person(given = "M.",
                      family = "Placzek",
                      role = "aut"),
               person(given = "Marius",
                      family = "Placzek",
                      role = "cre",
                      email = "marius.placzek@med.uni-goettingen.de"))
as necessary.
Maintainer: ‘Altieri Linda <linda.altieri@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "L.",
                      family = "Altieri",
                      role = "aut"),
               person(given = "D.",
                      family = "Cocchi",
                      role = "aut"),
               person(given = "G.",
                      family = "Roli",
                      role = "aut"),
               person(given = "Altieri",
                      family = "Linda",
                      role = "cre",
                      email = "linda.altieri@unibo.it"))
as necessary.
Maintainer: ‘Fabio Sigrist <fabiosigrist@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fabio",
                      family = "Sigrist",
                      role = c("aut", "cre"),
                      email = "fabiosigrist@gmail.com"),
               person(given = c("Hans", "R."),
                      family = "Kuensch",
                      role = "aut"),
               person(given = c("Werner", "A."),
                      family = "Stahel",
                      role = "aut"))
as necessary.
Maintainer: ‘Rounak Dey <deyrnk@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rounak",
                      family = "Dey",
                      role = c("aut", "cre"),
                      email = "deyrnk@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sim_functional_process.R’
Maintainer: ‘Tuomas Rajala <tuomas.rajala@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tuomas",
                    family = "Rajala",
                    role = c("aut", "cre"),
                    email = "tuomas.rajala@iki.fi")
as necessary.
Maintainer: ‘David Clifford <david.clifford+CRAN@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Clifford",
                    role = c("aut", "cre"),
                    email = "david.clifford+CRAN@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dnnModel.R’ ‘interGradientsDL.R’ ‘loadData.R’ ‘spatialClustering.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  FEMdensity.Rd: basisfd
  smooth.FEM.basis.Rd: lambda2df, lambda2gcv, df2lambda
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Javier Garcia-Pintado <jgarciapintado@marum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "Garcia-Pintado",
                    role = c("aut", "cre"),
                    email = "jgarciapintado@marum.de")
as necessary.
checkRd: (-1) distSG.Rd:40: Lost braces; missing escapes or markup?
    40 |   matrix and weight matrix (plus a matrix with {eID} identifiers
       |                                                ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘kinetic_ising_ensemble.R’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  grf.Rd: ranger
  grf.bw.Rd: ranger
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Nobin Chandra Paul<ncp375@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nobin", "Chandra"),
                    family = "Paul",
                    role = c("aut", "cre"),
                    email = "ncp375@gmail.com")
as necessary.
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Blas M. Benito <blasbenito@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
Maintainer: ‘Yili Hong <yilihong@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yili",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "yilihong@vt.edu"),
               person(given = "Li",
                      family = "Xu",
                      role = "aut"),
               person(given = "Yimeng",
                      family = "Xie",
                      role = "aut"),
               person(given = "Zhongnan",
                      family = "Jin",
                      role = "aut"))
as necessary.

The Description field contains
  al. (2018, <arXiv:1809.06418>). The package also contains the Lyme
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++14: please drop specification unless essential
Found the following significant warnings:
  RcppSpatMCA.cpp:641:22: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  RcppSpatMCA.cpp:702:13: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
  RcppSpatMCA.cpp:930:10: warning: ‘eT arma::Mat<eT>::min(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_min() with ind2sub() instead [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SpatMCA.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Benjamin M. Taylor <benjamin.taylor.software@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "M."),
                      family = "Taylor",
                      role = c("aut", "cre"),
                      email = "benjamin.taylor.software@gmail.com"),
               person(given = c("Barry", "S.", "Rowlingson", "Additional", "contributions", "Ziyu"),
                      family = "Zheng",
                      role = "aut"))
as necessary.
Maintainer: ‘Samuel I. Berchuck <sib2@duke.edu>’

The Description field contains
  Spatial Surfaces", by Berchuck et al (2019), <arXiv:1911.04337>. The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following significant warnings:
  MCMC_Samplers.cpp:56:25: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  MCMC_Samplers.cpp:57:25: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  MCMC_Samplers.cpp:91:25: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  MCMC_Samplers.cpp:92:25: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spBFA.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Maintainer: ‘Francesco Pantalone <pantalone.fra@gmail.com>’

The Description field contains
  <arXiv:1710.09116>. The implementation has been done in C++ through the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Axel",
                      family = "Gandy",
                      role = c("aut", "cre"),
                      email = "a.gandy@imperial.ac.uk"),
               person(given = c("Jan", "Terje"),
                      family = "Kvaloy.",
                      role = "aut",
                      email = "jan.t.kvaloy@uis.no"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ning Hao <nhao@math.arizona.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yue", "S."),
                      family = "Niu",
                      role = "aut"),
               person(given = "Ning",
                      family = "Hao",
                      role = c("aut", "cre"),
                      email = "nhao@math.arizona.edu"),
               person(given = "Bin",
                      family = "Dong",
                      role = "aut"))
as necessary.
Maintainer: ‘Milana Gataric <m.gataric@statslab.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Milana",
                      family = "Gataric",
                      role = c("aut", "cre"),
                      email = "m.gataric@statslab.cam.ac.uk"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  T. and Samworth, R. J. (2018) <arXiv:1712.05630>. The algorithm is
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David A. Schoenfeld <dschoenfeld@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "A."),
                    family = "Schoenfeld",
                    role = c("aut", "cre"),
                    email = "dschoenfeld@mgh.harvard.edu")
as necessary.
Maintainer: ‘Ziang Zhang <aguero.zhang@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "aguero.zhang@mail.utoronto.ca"),
               person(given = "Lei",
                      family = "Sun",
                      role = "aut"))
as necessary.

The Description field contains
  Accounting for Covariate Effects" <arXiv:2203.15641>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Samuel I. Berchuck <sib2@duke.edu>’

The Description field contains
  visual field data", <arXiv:1811.11038>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Shuichi Kawano <skawano@math.kyushu-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shuichi",
                    family = "Kawano",
                    role = c("aut", "cre"),
                    email = "skawano@math.kyushu-u.ac.jp")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘federov.R’
Maintainer: ‘Rasheed AM <a.rasheed@qut.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rasheed",
                      family = "AM",
                      role = c("aut", "cre"),
                      email = "a.rasheed@qut.edu.au"),
               person(given = "Egodawatta",
                      family = "P",
                      role = "aut"),
               person(given = "Goonetilleke",
                      family = "A",
                      role = "aut"),
               person(given = "McGree",
                      family = "J",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexios Ghalanos <alexios@4dscape.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexios",
                    family = "Ghalanos",
                    role = c("aut", "cre"),
                    email = "alexios@4dscape.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Javier",
                      family = "Martinez-Lopez",
                      role = c("aut", "cre"),
                      email = "javi.martinez.lopez@gmail.com"),
               person(given = "Babak",
                      family = "Naimi",
                      role = "aut",
                      email = "naimi.b@gmail.com"),
               person(given = "Julia",
                      family = "Martinez-Fernandez",
                      role = "aut",
                      email = "juliamf@um.es"))
as necessary.
Maintainer: ‘Charlie Beirnaert <charlie_beirnaert@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charlie",
                      family = "Beirnaert",
                      role = c("aut", "cre"),
                      email = "charlie_beirnaert@icloud.com"),
               person(given = c("Trung", "Nghia"),
                      family = "Vu",
                      role = "aut"),
               person(given = "Pieter",
                      family = "Meysman",
                      role = "aut"),
               person(given = "Kris",
                      family = "Laukens",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Valkenborg",
                      role = "aut"))
as necessary.
checkRd: (-1) findRef.Rd:39: Lost braces
    39 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
checkRd: (-1) hClustAlign.Rd:70: Lost braces
    70 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
Maintainer: ‘Denis Rastegaev <drastega@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denis",
                    family = "Rastegaev",
                    role = c("aut", "cre"),
                    email = "drastega@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Roadmap of specklestar package
Maintainer: ‘Azka Javaid <azka.javaid.gr@dartmouth.edu>’

The Description field contains
  (2009) <arXiv:0909.4061>. Clustering method is outlined in: Song et
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  speck.Rd: Ckmeans.1d.dp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
checkRd: (-1) FitAkdParameters.Rd:23: Lost braces; missing escapes or markup?
    23 |       p(y|ens) = 1 / K * sum {dnorm(y, z.i, s)} \cr
       |                              ^
Maintainer: ‘Chris Paciorek <paciorek@alumni.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Paciorek",
                    role = c("aut", "cre"),
                    email = "paciorek@alumni.cmu.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) image.plot.Rd:78: Escaped LaTeX specials: \$
Maintainer: ‘Martin Seilmayer <martin.seilmayer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "martin.seilmayer@gmail.com")
as necessary.
Running ‘tinytest.R’ [4s/4s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   tinytest::test_package("spectralR")
  + }
  
  test_get.pixel.data.R.........    1 tests [0;32mOK[0m [0;36m83ms[0m
  
  test_prepare.vector.data.R....    1 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    2 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    3 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    4 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    4 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    4 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    5 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    6 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    7 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    8 tests [0;32mOK[0m 
  test_prepare.vector.data.R....    9 tests [0;32mOK[0m 
  test_prepare.vector.data.R....   10 tests [0;32mOK[0m 
  test_prepare.vector.data.R....   11 tests [0;32mOK[0m 
  test_prepare.vector.data.R....   12 tests [0;32mOK[0m [0;36m69ms[0m
  
  test_spectral.curves.plot.R...    1 tests [0;32mOK[0m Joining with `by = join_by(variable)`
  Error in if (msg != "") { : the condition has length > 1
  Calls: <Anonymous> ... lapply -> FUN -> eval -> eval -> expect_silent -> fun
  Execution halted
Author field differs from that derived from Authors@R
  Author:    ‘Johannes Zauner [aut, cre, cph] (<https://orcid.org/0000-0003-2171-4566>), LiTG [fnd, cph] (www.litg.de)’
  Authors@R: ‘Johannes Zauner [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-2171-4566>), LiTG [fnd, cph] (URL: www.litg.de)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘analysis_age.R’ ‘analysis_alpha.R’ ‘analysis_helpers.R’
    ‘analysis_helpers_table.R’ ‘analysis_photo.R’ ‘analysis_radio.R’
    ‘analysis_setup.R’ ‘export_Output_Settings.R’ ‘export_download.R’
    ‘export_helpers.R’ ‘export_helpers_plot.R’ ‘export_helpers_table.R’
    ‘import_examples.R’ ‘import_examples_box.R’
Specified C++11: please drop specification unless essential
Maintainer: ‘Christopher R John <chris.r.john86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christopher", "R"),
                      family = "John",
                      role = c("aut", "cre"),
                      email = "chris.r.john86@gmail.com"),
               person(given = "David",
                      family = "Watson",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘innprod.R’ ‘utils.R’
Maintainer: ‘Castor Guisande Gonzalez <castor@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Castor", "Guisande"),
                    family = "Gonzalez",
                    role = c("aut", "cre"),
                    email = "castor@uvigo.es")
as necessary.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = c("Elizabeth", "A."),
                      family = "Thompson",
                      role = "aut",
                      email = "eathomp@u.washington.edu"))
as necessary.
checkRd: (-1) speech_recompiler.Rd:25: Lost braces; missing escapes or markup?
    25 | The default compilation is that of \ code {speech_build (., compiler = TRUE}).
       |                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘import_qiime2_tax_table.R’ ‘import_sintax_tax_table.R’
Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michal",
                      family = "Juraska",
                      role = c("aut", "cre"),
                      email = "mjuraska@fredhutch.org"),
               person(given = c("with", "contributions", "from", "Peter", "B."),
                      family = "Gilbert",
                      role = "aut",
                      email = "pgilbert@scharp.org"),
               person(given = "Xiaomin",
                      family = "Lu",
                      role = "aut",
                      email = "xlu2@phhp.ufl.edu"),
               person(given = "Min",
                      family = "Zhang",
                      role = "aut",
                      email = "mzhangst@umich.edu"),
               person(given = "Marie",
                      family = "Davidian",
                      role = "aut",
                      email = "davidian@stat.ncsu.edu"),
               person(given = c("Anastasios", "A."),
                      family = "Tsiatis",
                      role = "aut",
                      email = "tsiatis@stat.ncsu.edu"))
as necessary.
Maintainer: ‘Selva Prabhakaran <selva86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Selva",
                    family = "Prabhakaran",
                    role = c("aut", "cre"),
                    email = "selva86@gmail.com")
as necessary.
Found the following files/directories:
  ‘.neig’
Maintainer: ‘Maximilian Lange <maximilian-lange@t-online.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Lange",
                      role = c("aut", "cre"),
                      email = "maximilian-lange@t-online.de"),
               person(given = "Sven",
                      family = "Lautenbach",
                      role = "aut"),
               person(given = "Claudia",
                      family = "Raedig",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Brenning <alexander.brenning@uni-jena.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yang Liu <yliu87@umd.edu>’

The Description field contains
  <arXiv:2303.10079>. Both the conditional densities of observed
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xingche Guo <xguo@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xingche",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "xguo@iastate.edu")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spFW.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) cylinder.counts.Rd:61-62: Lost braces
    61 | nucleotide, so that \code{a.c} represents the set {\code{aac}, \code{acc}, 
       |                                                   ^
Maintainer: ‘Yijun Xie <yijun.xie@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijun",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "yijun.xie@uwaterloo.ca")
as necessary.
Maintainer: ‘Jongmin Lee <jongminlee9218@gmail.com>’

The Description field contains
  H.-S. (2020) <arXiv:2003.02578>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.
Maintainer: ‘John P. Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "P."),
                      family = "Nolan",
                      role = c("aut", "cre"),
                      email = "jpnolan@american.edu"),
               person(given = "American",
                      family = "University",
                      role = "aut"))
as necessary.
checkRd: (-1) adaptIntegrateSpherePolar.Rd:14: Lost braces
    14 | code{adaptIntegrateBallPolar()} will likely miss these abrupt changes and give
       |     ^
Maintainer: ‘Bob Rudis <bob@rud.is>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bob",
                      family = "Rudis",
                      role = c("aut", "cre"),
                      email = "bob@rud.is",
                      comment = "bob@rud.is"),
               person(family = "SEOmoz"),
               person(family = "Inc",
                      role = "aut"))
as necessary.
Maintainer: ‘Iván Ayala-Bizarro <ivan.ayala@unh.edu.pe>’

The Description field contains
  http://drought.unl.edu/monitoringtools/downloadablespiprogram.aspx.
Please enclose URLs in angle brackets (<...>).
Found the following files/directories:
  ‘AlphaGA_3.txt’ ‘AlphaML_3.txt’ ‘BetaGA_3.txt’ ‘BetaML_3.txt’
  ‘Performance_GA_ML_ 3 .pdf’ ‘SPIGA_3Pmon.Pm_St1.pdf’
  ‘SPIGA_3Pmon.Pm_St2.pdf’ ‘SPI_AG_3.txt’ ‘SPI_ML_3.txt’
  ‘SPI_ML_3Pm_St1.pdf’ ‘SPI_ML_3Pm_St2.pdf’ ‘SPI_ML_3Pm_St3.pdf’
  ‘SPI_ML_3Pm_St4.pdf’ ‘SPI_PARAM_3.txt’ ‘SPI_PARAM_3Pm_St1.pdf’
  ‘SPI_PARAM_3Pm_St2.pdf’ ‘SPI_PARAM_3Pm_St3.pdf’
  ‘SPI_PARAM_3Pm_St4.pdf’
Maintainer: ‘Udaya B. Kogalur <ubk@kogalur.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hemant",
                      family = "Ishwaran",
                      role = "aut",
                      email = "hemant.ishwaran@gmail.com"),
               person(given = c("Udaya", "B."),
                      family = "Kogalur",
                      role = "cre",
                      email = "ubk@kogalur.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arturas Rozenas <ar199@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arturas",
                    family = "Rozenas",
                    role = c("aut", "cre"),
                    email = "ar199@nyu.edu")
as necessary.
Maintainer: ‘Jilber Urbina <JilberUrbina@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jilber",
                    family = "Urbina",
                    role = c("aut", "cre"),
                    email = "jilberurbina@gmail.com")
as necessary.
Maintainer: ‘Johannes W. Dietrich <johannes.dietrich@ruhr-uni-bochum.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Sam Levin <levisc8@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gudrun",
                      family = "Carl",
                      role = c("cre", "aut")),
               person(given = "Ingolf",
                      family = "Kuehn",
                      role = "aut"),
               person(given = "Sam",
                      family = "Levin",
                      role = c("aut", "cre"),
                      email = "levisc8@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Julien Chiquet <julien.chiquet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = "aut"),
               person(given = "Julien",
                      family = "Chiquet",
                      role = c("aut", "cre"),
                      email = "julien.chiquet@gmail.com"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"),
               person(given = "Pierre-Alexandre",
                      family = "Mattei",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘spinyReg.Rd’:
    \keyword{models,}
Maintainer: ‘Roberto Villegas-Diaz <r.villegas-diaz@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Melantha Wang <wang.melantha@gmail.com>’

The Description field contains
  Cost Experience Simulator" <arXiv:2109.04058>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
Maintainer: ‘Sam Parsons <sam.parsons@radboudumc.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/sdparsons/splithalf
which should likely be
  https://github.com/sdparsons/splithalf/issues
instead.
checkRd: (-1) speedtestdata.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:23: Lost braces in \itemize; meant \describe ?
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SPlit.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.

The Description field contains
  Christidis, Van Aelst and Zamar (2019) <arXiv:1812.05678>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ananda Mahto <mrdwab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ananda",
                    family = "Mahto",
                    role = c("aut", "cre"),
                    email = "mrdwab@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Feature Changes
File ‘splusTimeDate/libs/splusTimeDate.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘addlearn_local.R’
Maintainer: ‘Romin Ebrahimi <romin.ebrahimi@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Romin",
                    family = "Ebrahimi",
                    role = c("aut", "cre"),
                    email = "romin.ebrahimi@utexas.edu")
as necessary.
Found the following significant warnings:
  /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/spnn.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Specified C++11: please drop specification unless essential
checkRd: (-1) spnn-package.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:18: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as.idigbio.Rd: idig_search_records
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Vincent Guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vincent",
                    family = "Guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Maintainer: ‘Feiyu Yue <yuefyopals@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihao",
                      family = "Zheng",
                      role = "aut"),
               person(given = "Feiyu",
                      family = "Yue",
                      role = c("aut", "cre"),
                      email = "yuefyopals@gmail.com"))
as necessary.
Maintainer: ‘Lennard van Wanrooij <lennardvanwanrooij@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lennard",
                    family = "van Wanrooij",
                    role = c("aut", "cre"),
                    email = "lennardvanwanrooij@gmail.com")
as necessary.
Maintainer: ‘Ming Wang <willnju@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ming",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "willnju@gmail.com"),
               person(given = "Yongtao",
                      family = "Guan",
                      role = "aut"),
               person(given = "Kun",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Nobin Chandra Paul<nobin.niasm@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nobin", "Chandra"),
                      family = "Paul",
                      role = c("aut", "cre"),
                      email = "nobin.niasm@outlook.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = "Ankur",
                      family = "Biswas",
                      role = "aut"),
               person(given = "Tauqueer",
                      family = "Ahmad",
                      role = "aut"),
               person(given = c("Prachi", "Misra"),
                      family = "Sahoo",
                      role = "aut"))
as necessary.