Running ‘run-all.R’ [13s/31s]
  Running ‘testthat.R’ [13s/31s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testthat)
  > 
  > test_check("ProjectTemplate")
  Loading required package: ProjectTemplate
  Loading required package: digest
  Loading required package: tibble
  Project name: test_project3e2e1c60dac70f
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c12f2456a
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c10c1e563
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project3e2e1c10c1e563
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  dummy   999
  Configuration for project: test_project3e2e1c10c1e563
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  
  Additional custom config present for this project:
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c6fa231ef
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: foo.reader.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: example
    Creating cache entry from global environment: example
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Following objects not in memory: 
  Objects to clear from memory: xxxx
  Project name: test_project3e2e1c432380a9
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: helper.function project.info
  Clearing cache for project: test_project3e2e1c432380a9
  Clearing cache for project: test_project3e2e1c4b60d848
  Objects to clear from memory: xxx
  Project name: test_project3e2e1c4b60d848
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from CODE: xxxx
  Objects to clear from memory: config project.info
  Objects to clear from memory: project.info
  Objects to clear from memory: yyy
  Following objects not in memory: xxx
  Following objects not in memory: xxx
  Variables not cleared: config
  No objects to clear
  Objects to clear from memory: .yyy helper.function project.info
  Project name: test_project3e2e1c7abc525b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c7abc525b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project3e2e1c3dec84da
  Project name: test_project3e2e1c6c1c819d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c1f929af7
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  Current Directory: test_project3e2e1c4c4d9b2c is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project3e2e1c4c4d9b2c is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project23e2e1c1ee55d9d is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Objects to clear from memory: config helper.function project.info
  No objects to clear
  Objects to clear from memory: config file3e2e1c2ff91b64 helper.function project.info
    Creating cache entry from CODE: test_data
  Current Directory: test_project3e2e1c721f7fdf is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run load.project()
  
  Current Directory: test_project3e2e1c721f7fdf is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run clear.cache() again.
  
  Current Directory: test_project3e2e1c721f7fdf is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run cache() again.
  
  Current Directory: test_project3e2e1c721f7fdf is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run reload.project() again.
  
  Current Directory: test_project3e2e1c721f7fdf is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run test.project() again.
  
  Current Directory: test_project3e2e1c721f7fdf is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run stub.tests() again.
  
  Current Directory: test_project3e2e1c721f7fdf is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run project.config()
  
  Project name: test_project3e2e1c6b3fdc84
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: Thumbs
  Loading required namespace: RSQLite
    Creating cache entry from global environment: var_to_cache
  Loading required package: data.table
    
  01-test_data.py start
  01-test_data.py finish
    
  02-test_data.py start
  ['1', '20']
  ['2', '30']
  ['3', '40']
  Python data exists in the environment
  y
  02-test_data.py finish
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file contained unused entries which have been
  removed.  The unused entries are:
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] TRUE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Project name: test_project3e2e1c57550b59
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: .Random.seed config helper.function project.info
  Project name: test_project3e2e1c1518abe4
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c1518abe4
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c5b5751c3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c5b5751c3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c5e5a080d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c5e5a080d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c4faae5d8
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c13ce8d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c13ce8d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c3cc89cf8
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c3cc89cf8
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c7dd3d7c3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c7dd3d7c3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c45ce2e90
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c45ce2e90
  Loading project configuration
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3e2e1c4bd3b7a2
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c4bd3b7a2
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Loading required package: qs
  qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
    Creating cache entry from global environment: cache.qs
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
    Loading table: example_30a
    Loading table: example_30b
    Loading table: example_31a
    Loading table: example_31b
    Loading table: example_28
  re-encoding from CP1252
  re-encoding from CP1252
  Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
  Objects to clear from memory: config helper.function project.info
  Items in cache will not be cleared
  Use reload.project(reset=TRUE) to clear cache also
  Objects to clear from memory: helper.function project.info z
  Reloading Project ...
  Project name: test_project3e2e1c766dac87
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading cached data set: z
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info x y z
  Project name: test_project3e2e1c6a5b3aa
  Loading project configuration
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c2ee6f404
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3e2e1c3a12201e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: file_not_in_full_template
   Translating data.frame to tibble: file_not_in_full_template
    Creating cache entry from global environment: file_not_in_full_template
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  [1] FALSE
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
  `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
  
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  Error: Test failures
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(ProjectTemplate)
  Loading required package: digest
  Loading required package: tibble
  > 
  > test_check("ProjectTemplate")
  Project name: test_project3eb1695c005c97
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb1691ab94ed7
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb16979dba65f
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project3eb16979dba65f
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  dummy   999
  Configuration for project: test_project3eb16979dba65f
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  
  Additional custom config present for this project:
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb169636221b2
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: foo.reader.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: example
    Creating cache entry from global environment: example
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Following objects not in memory: 
  Objects to clear from memory: xxxx
  Project name: test_project3eb16972507777
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: helper.function project.info
  Clearing cache for project: test_project3eb16972507777
  Clearing cache for project: test_project3eb169602d63c5
  Objects to clear from memory: xxx
  Project name: test_project3eb169602d63c5
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from CODE: xxxx
  Objects to clear from memory: config project.info
  Objects to clear from memory: project.info
  Objects to clear from memory: yyy
  Following objects not in memory: xxx
  Following objects not in memory: xxx
  Variables not cleared: config
  No objects to clear
  Objects to clear from memory: .yyy helper.function project.info
  Project name: test_project3eb16919fa4aa7
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb16919fa4aa7
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project3eb169573bdf89
  Project name: test_project3eb1693cf5e9b6
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb1696d06c66f
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  Current Directory: test_project3eb169517db038 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project3eb169517db038 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project23eb1696b94a909 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Objects to clear from memory: config helper.function project.info
  No objects to clear
  Objects to clear from memory: config file3eb169357d46e2 helper.function project.info
    Creating cache entry from CODE: test_data
  Current Directory: test_project3eb16936769785 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run load.project()
  
  Current Directory: test_project3eb16936769785 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run clear.cache() again.
  
  Current Directory: test_project3eb16936769785 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run cache() again.
  
  Current Directory: test_project3eb16936769785 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run reload.project() again.
  
  Current Directory: test_project3eb16936769785 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run test.project() again.
  
  Current Directory: test_project3eb16936769785 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run stub.tests() again.
  
  Current Directory: test_project3eb16936769785 is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run project.config()
  
  Project name: test_project3eb16937c0af56
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: Thumbs
  Loading required namespace: RSQLite
    Creating cache entry from global environment: var_to_cache
  Loading required package: data.table
    
  01-test_data.py start
  01-test_data.py finish
    
  02-test_data.py start
  ['1', '20']
  ['2', '30']
  ['3', '40']
  Python data exists in the environment
  y
  02-test_data.py finish
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file contained unused entries which have been
  removed.  The unused entries are:
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] TRUE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Project name: test_project3eb169309f3fa3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: .Random.seed config helper.function project.info
  Project name: test_project3eb16936bfa3ff
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb16936bfa3ff
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb1693bd5a08d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb1693bd5a08d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb16920a4ffa
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb16920a4ffa
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb1691c3169c4
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb16950f99d27
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb16950f99d27
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb1693223385
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb1693223385
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb1692bf38e18
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb1692bf38e18
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb16945ab1d98
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb16945ab1d98
  Loading project configuration
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3eb16966bac5d3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb16966bac5d3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Loading required package: qs
  qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
    Creating cache entry from global environment: cache.qs
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
    Loading table: example_30a
    Loading table: example_30b
    Loading table: example_31a
    Loading table: example_31b
    Loading table: example_28
  re-encoding from CP1252
  re-encoding from CP1252
  Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
  Objects to clear from memory: config helper.function project.info
  Items in cache will not be cleared
  Use reload.project(reset=TRUE) to clear cache also
  Objects to clear from memory: helper.function project.info z
  Reloading Project ...
  Project name: test_project3eb169146f43b0
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading cached data set: z
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info x y z
  Project name: test_project3eb169a2f7531
  Loading project configuration
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb169239e8892
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3eb169141bc5dd
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: file_not_in_full_template
   Translating data.frame to tibble: file_not_in_full_template
    Creating cache entry from global environment: file_not_in_full_template
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  [1] FALSE
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
  `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
  
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  Error: Test failures
  Execution halted