Running ‘run-all.R’ [13s/32s]
  Running ‘testthat.R’ [13s/31s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testthat)
  > 
  > test_check("ProjectTemplate")
  Loading required package: ProjectTemplate
  Loading required package: digest
  Loading required package: tibble
  Project name: test_project10dfcd4d01e41d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcd780348d1
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcd377f5899
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project10dfcd377f5899
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  dummy   999
  Configuration for project: test_project10dfcd377f5899
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  
  Additional custom config present for this project:
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcd32c559ea
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: foo.reader.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: example
    Creating cache entry from global environment: example
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Following objects not in memory: 
  Objects to clear from memory: xxxx
  Project name: test_project10dfcd6e4cb447
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: helper.function project.info
  Clearing cache for project: test_project10dfcd6e4cb447
  Clearing cache for project: test_project10dfcd1d777378
  Objects to clear from memory: xxx
  Project name: test_project10dfcd1d777378
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from CODE: xxxx
  Objects to clear from memory: config project.info
  Objects to clear from memory: project.info
  Objects to clear from memory: yyy
  Following objects not in memory: xxx
  Following objects not in memory: xxx
  Variables not cleared: config
  No objects to clear
  Objects to clear from memory: .yyy helper.function project.info
  Project name: test_project10dfcd6bab9352
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd6bab9352
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project10dfcd4d963783
  Project name: test_project10dfcd52cea79b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd77cf42a6
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  Current Directory: test_project10dfcd751b4309 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project10dfcd751b4309 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project210dfcd2debf2bd is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Objects to clear from memory: config helper.function project.info
  No objects to clear
  Objects to clear from memory: config file10dfcd2eda414c helper.function project.info
    Creating cache entry from CODE: test_data
  Current Directory: test_project10dfcdde5f1cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run load.project()
  
  Current Directory: test_project10dfcdde5f1cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run clear.cache() again.
  
  Current Directory: test_project10dfcdde5f1cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run cache() again.
  
  Current Directory: test_project10dfcdde5f1cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run reload.project() again.
  
  Current Directory: test_project10dfcdde5f1cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run test.project() again.
  
  Current Directory: test_project10dfcdde5f1cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run stub.tests() again.
  
  Current Directory: test_project10dfcdde5f1cc is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run project.config()
  
  Project name: test_project10dfcd48630424
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: Thumbs
  Loading required namespace: RSQLite
    Creating cache entry from global environment: var_to_cache
  Loading required package: data.table
    
  01-test_data.py start
  01-test_data.py finish
    
  02-test_data.py start
  ['1', '20']
  ['2', '30']
  ['3', '40']
  Python data exists in the environment
  y
  02-test_data.py finish
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file contained unused entries which have been
  removed.  The unused entries are:
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] TRUE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Project name: test_project10dfcd21cc0e7f
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: .Random.seed config helper.function project.info
  Project name: test_project10dfcd1a1ddab1
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd1a1ddab1
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcdc6b70ee
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcdc6b70ee
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcd45933696
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd45933696
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcd334d82c5
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcd48a21472
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd48a21472
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcd3ddaeb88
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd3ddaeb88
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcd2a8f2655
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd2a8f2655
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcde1c81ee
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcde1c81ee
  Loading project configuration
  Objects to clear from memory: config helper.function project.info
  Project name: test_project10dfcd5489be17
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd5489be17
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Loading required package: qs
  qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
    Creating cache entry from global environment: cache.qs
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
    Loading table: example_30a
    Loading table: example_30b
    Loading table: example_31a
    Loading table: example_31b
    Loading table: example_28
  re-encoding from CP1252
  re-encoding from CP1252
  Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
  Objects to clear from memory: config helper.function project.info
  Items in cache will not be cleared
  Use reload.project(reset=TRUE) to clear cache also
  Objects to clear from memory: helper.function project.info z
  Reloading Project ...
  Project name: test_project10dfcd16b91e2d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading cached data set: z
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info x y z
  Project name: test_project10dfcd47d1c430
  Loading project configuration
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd4d2f30d8
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project10dfcd5bf64eff
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: file_not_in_full_template
   Translating data.frame to tibble: file_not_in_full_template
    Creating cache entry from global environment: file_not_in_full_template
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  [1] FALSE
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
  `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
  
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  Error: Test failures
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(ProjectTemplate)
  Loading required package: digest
  Loading required package: tibble
  > 
  > test_check("ProjectTemplate")
  Project name: test_project1165e2c68cb03
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e264590c26
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e229ebaeb2
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project1165e229ebaeb2
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  dummy   999
  Configuration for project: test_project1165e229ebaeb2
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  
  Additional custom config present for this project:
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e26d33df53
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: foo.reader.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: example
    Creating cache entry from global environment: example
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Following objects not in memory: 
  Objects to clear from memory: xxxx
  Project name: test_project1165e236e25e7e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: helper.function project.info
  Clearing cache for project: test_project1165e236e25e7e
  Clearing cache for project: test_project1165e2137ad468
  Objects to clear from memory: xxx
  Project name: test_project1165e2137ad468
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from CODE: xxxx
  Objects to clear from memory: config project.info
  Objects to clear from memory: project.info
  Objects to clear from memory: yyy
  Following objects not in memory: xxx
  Following objects not in memory: xxx
  Variables not cleared: config
  No objects to clear
  Objects to clear from memory: .yyy helper.function project.info
  Project name: test_project1165e276e470a6
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e276e470a6
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project1165e2440c0f57
  Project name: test_project1165e24422da60
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e2368cc02a
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  Current Directory: test_project1165e2231802e is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project1165e2231802e is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project21165e274415af6 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Objects to clear from memory: config helper.function project.info
  No objects to clear
  Objects to clear from memory: config file1165e22ebfd0e5 helper.function project.info
    Creating cache entry from CODE: test_data
  Current Directory: test_project1165e27bccb10d is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run load.project()
  
  Current Directory: test_project1165e27bccb10d is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run clear.cache() again.
  
  Current Directory: test_project1165e27bccb10d is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run cache() again.
  
  Current Directory: test_project1165e27bccb10d is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run reload.project() again.
  
  Current Directory: test_project1165e27bccb10d is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run test.project() again.
  
  Current Directory: test_project1165e27bccb10d is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run stub.tests() again.
  
  Current Directory: test_project1165e27bccb10d is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run project.config()
  
  Project name: test_project1165e269f6da23
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: Thumbs
  Loading required namespace: RSQLite
    Creating cache entry from global environment: var_to_cache
  Loading required package: data.table
    
  01-test_data.py start
  01-test_data.py finish
    
  02-test_data.py start
  ['1', '20']
  ['2', '30']
  ['3', '40']
  Python data exists in the environment
  y
  02-test_data.py finish
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file contained unused entries which have been
  removed.  The unused entries are:
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] TRUE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Project name: test_project1165e254d2ad4e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: .Random.seed config helper.function project.info
  Project name: test_project1165e2278aabbb
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e2278aabbb
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e21b87649a
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e21b87649a
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e280fd8a0
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e280fd8a0
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e267f1fd5c
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e23c28aa58
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e23c28aa58
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e23912c56b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e23912c56b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e261439860
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e261439860
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e23d773dd8
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e23d773dd8
  Loading project configuration
  Objects to clear from memory: config helper.function project.info
  Project name: test_project1165e231d76d27
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e231d76d27
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Loading required package: qs
  qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
    Creating cache entry from global environment: cache.qs
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
    Loading table: example_30a
    Loading table: example_30b
    Loading table: example_31a
    Loading table: example_31b
    Loading table: example_28
  re-encoding from CP1252
  re-encoding from CP1252
  Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
  Objects to clear from memory: config helper.function project.info
  Items in cache will not be cleared
  Use reload.project(reset=TRUE) to clear cache also
  Objects to clear from memory: helper.function project.info z
  Reloading Project ...
  Project name: test_project1165e245a5fa4a
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading cached data set: z
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info x y z
  Project name: test_project1165e220aea2cd
  Loading project configuration
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e21eca2d66
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project1165e22006824c
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: file_not_in_full_template
   Translating data.frame to tibble: file_not_in_full_template
    Creating cache entry from global environment: file_not_in_full_template
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  [1] FALSE
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
  `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
  
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  Error: Test failures
  Execution halted