Running ‘testthat.R’ [125s/365s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(simDAG)
  > library(testthat)
  > library(data.table)
  > library(igraph)
  
  Attaching package: 'igraph'
  
  The following object is masked from 'package:testthat':
  
      compare
  
  The following objects are masked from 'package:stats':
  
      decompose, spectrum
  
  The following object is masked from 'package:base':
  
      union
  
  > 
  > data.table::setDTthreads(1)
  > 
  > test_check("simDAG")
  t = 1 node = sickness2
  t = 1 node = sickness1
  t = 2 node = sickness2
  t = 2 node = sickness1
  t = 3 node = sickness2
  t = 3 node = sickness1
  t = 4 node = sickness2
  t = 4 node = sickness1
  t = 5 node = sickness2
  t = 5 node = sickness1
  starting worker pid=2440697 on localhost:11487 at 00:10:24.785
  starting worker pid=2440696 on localhost:11487 at 00:10:25.024
  
    |                                                                            
    |                                                                      |   0%Loading required package: simDAG
  Loading required package: simDAG
  loaded simDAG and set parent environment
  loaded simDAG and set parent environment
  Loading required package: foreach
  Loading required package: rngtools
  Loading required package: foreach
  Loading required package: rngtools
  
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    |======================================================================| 100%starting worker pid=2441214 on localhost:11487 at 00:10:33.950
  starting worker pid=2441213 on localhost:11487 at 00:10:34.191
  Loading required package: simDAG
  loaded simDAG and set parent environment
  Loading required package: simDAG
  Loading required package: foreach
  loaded simDAG and set parent environment
  Loading required package: rngtools
  Loading required package: foreach
  Loading required package: rngtools
  starting worker pid=2442155 on localhost:11487 at 00:10:47.578
  starting worker pid=2442158 on localhost:11487 at 00:10:48.015
  Loading required package: simDAG
  loaded simDAG and set parent environment
  Loading required package: foreach
  Loading required package: rngtools
  Loading required package: simDAG
  loaded simDAG and set parent environment
  Loading required package: foreach
  Loading required package: rngtools
  starting worker pid=2443082 on localhost:11487 at 00:10:59.119
  starting worker pid=2443081 on localhost:11487 at 00:10:59.168
  
    |                                                                            
    |                                                                      |   0%Loading required package: simDAG
  loaded simDAG and set parent environment
  Loading required package: simDAG
  Loading required package: foreach
  loaded simDAG and set parent environment
  Loading required package: rngtools
  Loading required package: foreach
  Loading required package: rngtools
  
    |                                                                            
    |===================================                                   |  50%
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    |======================================================================| 100%[ FAIL 7 | WARN 14 | SKIP 54 | PASS 847 ]
  
  ══ Skipped tests (54) ══════════════════════════════════════════════════════════
  • On CRAN (54): 'test_DAG.network_S3.r:7:3', 'test_DAG.network_S3.r:15:3',
    'test_DAG.network_S3.r:21:3', 'test_DAG.network_S3.r:29:3',
    'test_DAG.network_S3.r:39:3', 'test_DAG.network_S3.r:47:3',
    'test_DAG.network_S3.r:55:3', 'test_DAG.network_S3.r:61:3',
    'test_DAG.network_S3.r:69:3', 'test_DAG.network_S3.r:79:3',
    'test_DAG.node_S3.r:6:3', 'test_DAG.node_S3.r:11:3',
    'test_DAG.node_S3.r:16:3', 'test_DAG.node_S3.r:21:3',
    'test_DAG.node_S3.r:27:3', 'test_DAG.node_S3.r:34:3',
    'test_DAG.node_S3.r:39:3', 'test_DAG.node_S3.r:44:3',
    'test_DAG.node_S3.r:49:3', 'test_DAG.node_S3.r:55:3', 'test_dag.r:18:3',
    'test_dag.r:31:3', 'test_dag.r:41:3', 'test_dag.r:48:3', 'test_dag.r:61:3',
    'test_dag.r:77:3', 'test_node.r:519:3', 'test_plot.DAG.r:12:3',
    'test_plot.DAG.r:16:3', 'test_plot.DAG.r:20:3', 'test_plot.DAG.r:24:3',
    'test_plot.DAG.r:28:3', 'test_plot.DAG.r:32:3', 'test_plot.DAG.r:36:3',
    'test_plot.DAG.r:41:3', 'test_plot.DAG.r:45:3', 'test_plot.DAG.r:53:3',
    'test_plot.DAG.r:60:3', 'test_plot.DAG.r:65:3', 'test_plot.DAG.r:70:3',
    'test_plot.DAG.r:101:3', 'test_plot.DAG.r:105:3', 'test_plot.DAG.r:109:3',
    'test_plot.simDT.r:25:3', 'test_plot.simDT.r:29:3', 'test_plot.simDT.r:33:3',
    'test_plot.simDT.r:37:3', 'test_plot.simDT.r:41:3', 'test_plot.simDT.r:49:3',
    'test_plot.simDT.r:57:3', 'test_simDT_S3.r:12:3', 'test_simDT_S3.r:17:3',
    'test_simDT_S3.r:22:3', 'test_simDT_S3.r:26:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_node_rsurv.r:11:3'): general test case aftreg ──────────────────
  Error: An error occured when processing node 'Y'. The message was:
  Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/data/gannet/ripley/R/test-clang/bellreg/libs/bellreg.so':
    /data/gannet/ripley/R/test-clang/RcppParallel/lib/libtbb.so: file too short
  
  Backtrace:
      ▆
   1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:11:3
   2.   └─base::tryCatch(...)
   3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         └─value[[3L]](cond)
  ── Error ('test_node_rsurv.r:24:3'): general test case ahreg ───────────────────
  Error: An error occured when processing node 'Y'. The message was:
  Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/data/gannet/ripley/R/test-clang/bellreg/libs/bellreg.so':
    /data/gannet/ripley/R/test-clang/RcppParallel/lib/libtbb.so: file too short
  
  Backtrace:
      ▆
   1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:24:3
   2.   └─base::tryCatch(...)
   3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         └─value[[3L]](cond)
  ── Error ('test_node_rsurv.r:37:3'): general test case ehreg ───────────────────
  Error: An error occured when processing node 'Y'. The message was:
  Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/data/gannet/ripley/R/test-clang/bellreg/libs/bellreg.so':
    /data/gannet/ripley/R/test-clang/RcppParallel/lib/libtbb.so: file too short
  
  Backtrace:
      ▆
   1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:37:3
   2.   └─base::tryCatch(...)
   3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         └─value[[3L]](cond)
  ── Error ('test_node_rsurv.r:50:3'): general test case ypreg ───────────────────
  Error: An error occured when processing node 'Y'. The message was:
  Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/data/gannet/ripley/R/test-clang/bellreg/libs/bellreg.so':
    /data/gannet/ripley/R/test-clang/RcppParallel/lib/libtbb.so: file too short
  
  Backtrace:
      ▆
   1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:50:3
   2.   └─base::tryCatch(...)
   3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         └─value[[3L]](cond)
  ── Error ('test_node_rsurv.r:63:3'): general test case poreg ───────────────────
  Error: An error occured when processing node 'Y'. The message was:
  Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/data/gannet/ripley/R/test-clang/bellreg/libs/bellreg.so':
    /data/gannet/ripley/R/test-clang/RcppParallel/lib/libtbb.so: file too short
  
  Backtrace:
      ▆
   1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:63:3
   2.   └─base::tryCatch(...)
   3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         └─value[[3L]](cond)
  ── Error ('test_node_rsurv.r:76:3'): just as one column ────────────────────────
  Error: An error occured when processing node 'Y'. The message was:
  Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/data/gannet/ripley/R/test-clang/bellreg/libs/bellreg.so':
    /data/gannet/ripley/R/test-clang/RcppParallel/lib/libtbb.so: file too short
  
  Backtrace:
      ▆
   1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:76:3
   2.   └─base::tryCatch(...)
   3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         └─value[[3L]](cond)
  ── Error ('test_node_rsurv.r:90:3'): with censoring ────────────────────────────
  Error: An error occured when processing node 'Y'. The message was:
  Error in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/data/gannet/ripley/R/test-clang/bellreg/libs/bellreg.so':
    /data/gannet/ripley/R/test-clang/RcppParallel/lib/libtbb.so: file too short
  
  Backtrace:
      ▆
   1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:90:3
   2.   └─base::tryCatch(...)
   3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         └─value[[3L]](cond)
  
  [ FAIL 7 | WARN 14 | SKIP 54 | PASS 847 ]
  Error: Test failures
  Execution halted