Running ‘testthat.R’ [10s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(BIGr)
  > 
  > test_check("BIGr")
  The Ref_0001 sequence had to be added for: 0 tags
  The Alt_0002 sequence had to be added for: 1 tags
  Tags discarded due to lack of Ref_0001 sequence: 0 tags
  Tags discarded due to lack of Alt_0002 sequence: 0 tags
  Scanning file to determine attributes.
  File attributes:
    meta lines: 14
    header_line: 15
    variant count: 499
    column count: 159
  
  Meta line 14 read in.
  All meta lines processed.
  gt matrix initialized.
  Character matrix gt created.
    Character matrix gt rows: 499
    Character matrix gt cols: 159
    skip: 0
    nrows: 499
    row_num: 0
  
  Processed variant: 499
  All variants processed
  Scanning file to determine attributes.
  File attributes:
    meta lines: 14
    header_line: 15
    variant count: 499
    column count: 159
  
  Meta line 14 read in.
  All meta lines processed.
  gt matrix initialized.
  Character matrix gt created.
    Character matrix gt rows: 499
    Character matrix gt cols: 159
    skip: 0
    nrows: 499
    row_num: 0
  
  Processed variant: 499
  All variants processed
  Scanning file to determine attributes.
  File attributes:
    meta lines: 14
    header_line: 15
    variant count: 499
    column count: 159
  
  Meta line 14 read in.
  All meta lines processed.
  gt matrix initialized.
  Character matrix gt created.
    Character matrix gt rows: 499
    Character matrix gt cols: 159
    skip: 0
    nrows: 499
    row_num: 0
  
  Processed variant: 499
  All variants processed
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 58 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-madc2vcf_all.R:16:3'): test madc offtargets ────────────────────
  Error in `checkForRemoteErrors(val)`: 2 nodes produced errors; first error: 'recursive' must be a length-1 vector
  Backtrace:
      ▆
   1. └─BIGr::madc2vcf_all(...) at test-madc2vcf_all.R:16:3
   2.   └─BIGr:::loop_though_dartag_report(...)
   3.     └─parallel::parLapply(...)
   4.       ├─base::do.call(...)
   5.       └─parallel::clusterApply(...)
   6.         └─parallel:::staticClusterApply(cl, fun, length(x), argfun)
   7.           └─parallel:::checkForRemoteErrors(val)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 58 ]
  Error: Test failures
  In addition: Warning messages:
  1: In forceAndCall(1, FUN, newX[, i], ...) :
    closing unused connection 6 (<-localhost:11456)
  2: In forceAndCall(1, FUN, newX[, i], ...) :
    closing unused connection 5 (<-localhost:11456)
  Execution halted