Running ‘run-all.R’ [20s/46s]
  Running ‘testthat.R’ [20s/42s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
  > library(testthat)
  > 
  > test_check("ProjectTemplate")
  Loading required package: ProjectTemplate
  Loading required package: digest
  Loading required package: tibble
  Project name: test_project3bb50329b2e0c8
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb5033ef15c52
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb503b14c660
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project3bb503b14c660
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  dummy   999
  Configuration for project: test_project3bb503b14c660
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  
  Additional custom config present for this project:
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb5034a63cd22
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: foo.reader.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: example
    Creating cache entry from global environment: example
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Following objects not in memory: 
  Objects to clear from memory: xxxx
  Project name: test_project3bb5037a383883
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: helper.function project.info
  Clearing cache for project: test_project3bb5037a383883
  Clearing cache for project: test_project3bb5031836572c
  Objects to clear from memory: xxx
  Project name: test_project3bb5031836572c
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from CODE: xxxx
  Objects to clear from memory: config project.info
  Objects to clear from memory: project.info
  Objects to clear from memory: yyy
  Following objects not in memory: xxx
  Following objects not in memory: xxx
  Variables not cleared: config
  No objects to clear
  Objects to clear from memory: .yyy helper.function project.info
  Project name: test_project3bb50366282d9a
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb50366282d9a
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project3bb50376f7a9db
  Project name: test_project3bb5031bd55153
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb5034431980e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  Current Directory: test_project3bb50351f82d0a is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project3bb50351f82d0a is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project23bb5033f8e6186 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Objects to clear from memory: config helper.function project.info
  No objects to clear
  Objects to clear from memory: config file3bb50351bfbc6b helper.function project.info
    Creating cache entry from CODE: test_data
  Current Directory: test_project3bb5035bcc7bad is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run load.project()
  
  Current Directory: test_project3bb5035bcc7bad is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run clear.cache() again.
  
  Current Directory: test_project3bb5035bcc7bad is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run cache() again.
  
  Current Directory: test_project3bb5035bcc7bad is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run reload.project() again.
  
  Current Directory: test_project3bb5035bcc7bad is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run test.project() again.
  
  Current Directory: test_project3bb5035bcc7bad is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run stub.tests() again.
  
  Current Directory: test_project3bb5035bcc7bad is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run project.config()
  
  Project name: test_project3bb503497cb03
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: Thumbs
  Loading required namespace: RSQLite
    Creating cache entry from global environment: var_to_cache
  Loading required package: data.table
    
  01-test_data.py start
  01-test_data.py finish
    
  02-test_data.py start
  ['1', '20']
  ['2', '30']
  ['3', '40']
  Python data exists in the environment
  y
  02-test_data.py finish
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file contained unused entries which have been
  removed.  The unused entries are:
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] TRUE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Project name: test_project3bb5031e06e7d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: .Random.seed config helper.function project.info
  Project name: test_project3bb5034ddebf0e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb5034ddebf0e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb50326939d5f
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb50326939d5f
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb503156d0386
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb503156d0386
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb50322aef5d2
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb503147e3f7c
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb503147e3f7c
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb5031cf7aa10
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb5031cf7aa10
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb5031bf1edf1
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb5031bf1edf1
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb50358028520
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb50358028520
  Loading project configuration
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bb50319988b52
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb50319988b52
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Loading required package: qs
  qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
    Creating cache entry from global environment: cache.qs
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
    Loading table: example_30a
    Loading table: example_30b
    Loading table: example_31a
    Loading table: example_31b
    Loading table: example_28
  re-encoding from CP1252
  re-encoding from CP1252
  Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
  Objects to clear from memory: config helper.function project.info
  Items in cache will not be cleared
  Use reload.project(reset=TRUE) to clear cache also
  Objects to clear from memory: helper.function project.info z
  Reloading Project ...
  Project name: test_project3bb5034a2d7621
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading cached data set: z
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info x y z
  Project name: test_project3bb503208f60c
  Loading project configuration
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb5037ea09f7b
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bb5031160d9fe
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: file_not_in_full_template
   Translating data.frame to tibble: file_not_in_full_template
    Creating cache entry from global environment: file_not_in_full_template
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  [1] FALSE
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
  `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
  
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  Error: Test failures
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(ProjectTemplate)
  Loading required package: digest
  Loading required package: tibble
  > 
  > test_check("ProjectTemplate")
  Project name: test_project3bf5b63cd23f6d
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b63cb6dbed
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b67530d811
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project3bf5b67530d811
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  dummy   999
  Configuration for project: test_project3bf5b67530d811
  version                     0.11.0
  data_loading                TRUE
  data_loading_header         TRUE
  data_ignore                 
  cache_loading               TRUE
  recursive_loading           FALSE
  munging                     TRUE
  logging                     FALSE
  logging_level               INFO
  load_libraries              FALSE
  libraries                   reshape2, plyr, tidyverse, stringr, lubridate
  as_factors                  FALSE
  tables_type                 tibble
  attach_internal_libraries   FALSE
  cache_loaded_data           TRUE
  sticky_variables            NONE
  underscore_variables        TRUE
  cache_file_format           RData
  
  Additional custom config present for this project:
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b6130e603c
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: foo.reader.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: example
    Creating cache entry from global environment: example
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Following objects not in memory: 
  Objects to clear from memory: xxxx
  Project name: test_project3bf5b62d34d4d0
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: helper.function project.info
  Clearing cache for project: test_project3bf5b62d34d4d0
  Clearing cache for project: test_project3bf5b62d5f3249
  Objects to clear from memory: xxx
  Project name: test_project3bf5b62d5f3249
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
    Creating cache entry from CODE: xxxx
  Objects to clear from memory: config project.info
  Objects to clear from memory: project.info
  Objects to clear from memory: yyy
  Following objects not in memory: xxx
  Following objects not in memory: xxx
  Variables not cleared: config
  No objects to clear
  Objects to clear from memory: .yyy helper.function project.info
  Project name: test_project3bf5b616d558b9
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b616d558b9
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Configuration for project: test_project3bf5b657609f00
  Project name: test_project3bf5b657819362
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b62c8b95b3
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  
  == Testing 1.R =================================================================
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
  Current Directory: test_project3bf5b67695a6d6 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project3bf5b67695a6d6 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Directory: test_project23bf5b671fd689 is a ProjectTemplate directory
  Cannot create a new project inside an existing one
  Please change to another directory and re-run create.project()
  Objects to clear from memory: config helper.function project.info
  No objects to clear
  Objects to clear from memory: config file3bf5b6358c9213 helper.function project.info
    Creating cache entry from CODE: test_data
  Current Directory: test_project3bf5b66428412f is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run load.project()
  
  Current Directory: test_project3bf5b66428412f is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run clear.cache() again.
  
  Current Directory: test_project3bf5b66428412f is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run cache() again.
  
  Current Directory: test_project3bf5b66428412f is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run reload.project() again.
  
  Current Directory: test_project3bf5b66428412f is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run test.project() again.
  
  Current Directory: test_project3bf5b66428412f is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Change to a valid ProjectTemplate directory and run stub.tests() again.
  
  Current Directory: test_project3bf5b66428412f is not a valid ProjectTemplate directory because one or more mandatory directories are missing.  If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project().  migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
  Please change to correct directory and re-run project.config()
  
  Project name: test_project3bf5b61685d5be
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: Thumbs
  Loading required namespace: RSQLite
    Creating cache entry from global environment: var_to_cache
  Loading required package: data.table
    
  01-test_data.py start
  01-test_data.py finish
    
  02-test_data.py start
  ['1', '20']
  ['2', '30']
  ['3', '40']
  Python data exists in the environment
  y
  02-test_data.py finish
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
   data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
  
  There is a new config item called cache_loaded_data which auto-caches data
  after it has been loaded from the data directory.  This has been switched
  off for this project in case it breaks your scripts.  However you can switch
  it on manually by editing global.dcf
  
  data_tables has been renamed tables_type.  It can take the value 'tibble', 
  'data_table', or 'data_frame.  If data_tables is TRUE, tables_type will be
  set to 'data_table', otherwise the default 'data_frame' will be used.  if you 
  wish a different default set it manually by editing global.dcf.  Future new
  projects will use 'tibble' by default.
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file contained unused entries which have been
  removed.  The unused entries are:
  Migrating project configuration
  [1] FALSE
  Migrating project configuration
  [1] TRUE
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   tables_type
  Project name: test_project3bf5b66ce40d55
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: .Random.seed config helper.function project.info
  Project name: test_project3bf5b6a6a5d91
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b6a6a5d91
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b61bb9d5f6
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b61bb9d5f6
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b654ca0bca
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b654ca0bca
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b612066fb6
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b6529afe2
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b6529afe2
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b65293fcfd
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b65293fcfd
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b622cc0402
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b622cc0402
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b61412c1d4
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b61412c1d4
  Loading project configuration
  Objects to clear from memory: config helper.function project.info
  Project name: test_project3bf5b64d8262e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b64d8262e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info
  Loading required package: qs
  qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
    Creating cache entry from global environment: cache.qs
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
    Creating cache entry from global environment: xxxx
  Migrating project configuration
  [1] FALSE
  Your existing project configuration in globals.dcf does not contain up to
  date configuration settings in this version 0.11.0 of ProjectTemplate.  They will
  be added automatically during migration, but you should review afterward.
  Your config.dcf file was missing entries and defaults
  have been used.  The missing entries are:
   cache_loaded_data
    Loading table: example_30a
    Loading table: example_30b
    Loading table: example_31a
    Loading table: example_31b
    Loading table: example_28
  re-encoding from CP1252
  re-encoding from CP1252
  Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
  Objects to clear from memory: config helper.function project.info
  Items in cache will not be cleared
  Use reload.project(reset=TRUE) to clear cache also
  Objects to clear from memory: helper.function project.info z
  Reloading Project ...
  Project name: test_project3bf5b6662f6e2e
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading cached data set: z
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Objects to clear from memory: config helper.function project.info x y z
  Project name: test_project3bf5b676feb366
  Loading project configuration
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b67a197a7a
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  Project name: test_project3bf5b647fb5bea
  Loading project configuration
  Autoloading helper functions
   Running helper script: globals.R
   Running helper script: helpers.R
  Autoloading data
   Loading data set: file_not_in_full_template
   Translating data.frame to tibble: file_not_in_full_template
    Creating cache entry from global environment: file_not_in_full_template
  Munging data
   Running preprocessing script: 01-A.R
   Sourcing R script: 01-A.R
  [1] FALSE
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
  `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
  
  [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
  Error: Test failures
  Execution halted