Running ‘testthat.R’ [38s/46s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(slendr)
  The 'slim' binary could not be found in your $PATH. Most of
  the functionality of slendr will work without any issues but
  you will not be able to simulate data with the `slim()` function.
  
  If you want to run SLiM simulations, make sure to modify the $PATH
  variable so that it points to the directory containing the slim
  command-line program. One easy way to do this is to add this:
  
  PATH="path/to/directory/with/slim/binary"
  
  to your ~/.Renviron file.
  
  Alternatively, use the `slim_path` argument of the `slim()` function.
  --------------------
  A slendr Python (3.12) environment with the necessary versions of
  msprime (1.3.4), tskit (0.6.4), pyslim (1.0.4), and tspop (0.0.2)
  has not been found.
  
  You can setup a pre-configured environment with all of slendr's Python
  dependencies automatically by running the function `setup_env()`.
  > 
  > test_check("slendr")
  [ FAIL 1 | WARN 0 | SKIP 31 | PASS 159 ]
  
  ══ Skipped tests (31) ══════════════════════════════════════════════════════════
  • !check_dependencies(python = TRUE) is TRUE (29): 'test-compilation.R:69:1',
    'test-engines.R:1:1', 'test-future.R:15:1', 'test-geneflow.R:50:3',
    'test-ibd-squashing.R:1:1', 'test-ibd.R:1:1',
    'test-interaction-changes.R:3:1', 'test-manual-ts.R:1:1',
    'test-msprime-geneflow.R:5:1', 'test-msprime-metadata.R:1:1',
    'test-msprime.R:23:1', 'test-nonserialized.R:1:1', 'test-population.R:43:3',
    'test-population.R:60:3', 'test-population.R:142:3',
    'test-pure-msprime-vs-slendr.R:4:1', 'test-pure-slim-vs-slendr.R:4:1',
    'test-resizes-locked.R:1:1', 'test-resizes.R:1:1', 'test-runners.R:1:1',
    'test-sampling.R:3:1', 'test-simulation-runs.R:1:1',
    'test-time-direction.R:3:1', 'test-trees.R:1:1',
    'test-ts-ancestors-descendants.R:1:1', 'test-ts-pure-nonspatial.R:1:1',
    'test-ts.R:1:1', 'test-tspop.R:1:1', 'test-vcf.R:1:1'
  • !check_dependencies(python = TRUE) || !is_slim_present() is TRUE (1):
    'test-ts-pure-spatial.R:1:1'
  • !check_dependencies(python = TRUE, slim = TRUE) is TRUE (1):
    'test-extensions.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-naturalearth.R:2:3'): all three variants of the Natural Earth data can be downloaded ──
  Error in `rnaturalearth::ne_load(scale = scale, type = "land", category = "physical", 
      destdir = ne_dir)`: The file '/tmp/RtmprcyIQ1/naturalearth/ne_110m_land.gpkg' seems not to exist in your local folder '/tmp/RtmprcyIQ1/naturalearth'. Did you download it using `rnaturalearth::ne_download()`?
  Backtrace:
      ▆
   1. ├─utils::capture.output(...) at test-naturalearth.R:2:3
   2. │ └─base::withVisible(...elt(i))
   3. └─slendr::world(xrange = c(-15, 40), yrange = c(30, 60), crs = "EPSG:3035")
   4.   └─rnaturalearth::ne_load(scale = scale, type = "land", category = "physical", destdir = ne_dir)
   5.     └─cli::cli_abort(error_msg)
   6.       └─rlang::abort(...)
  
  [ FAIL 1 | WARN 0 | SKIP 31 | PASS 159 ]
  Error: Test failures
  Execution halted