Error(s) in re-building vignettes:
--- re-building ‘mouse.Rmd’ using rmarkdown
trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60361&format=file&file=GSE60361%5FC1%2D3005%2DExpression%2Etxt%2Egz'
Content type 'application/octet-stream' length 11239106 bytes (10.7 MB)
==================================================
downloaded 10.7 MB


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trying URL 'https://resources.aertslab.org/cistarget/tf_lists/allTFs_mm.txt'
Content type 'text/plain' length 11726 bytes (11 KB)
==================================================
downloaded 11 KB

trying URL 'https://github.com/scmethods/scregclust/raw/main/datasets/mouse_scregclust.rds'

Quitting from mouse.Rmd:124-140 [run-scregclust]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://github.com/scmethods/scregclust/raw/main/datasets/mouse_scregclust.rds'
---
Backtrace:
    ▆
 1. └─utils::download.file(url, fit_path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mouse.Rmd' failed with diagnostics:
cannot open URL 'https://github.com/scmethods/scregclust/raw/main/datasets/mouse_scregclust.rds'
--- failed re-building ‘mouse.Rmd’

--- re-building ‘pbmc.Rmd’ using rmarkdown
trying URL 'https://cf.10xgenomics.com/samples/cell-arc/2.0.0/pbmc_granulocyte_sorted_3k/pbmc_granulocyte_sorted_3k_filtered_feature_bc_matrix.h5'
Content type 'binary/octet-stream' length 38844318 bytes (37.0 MB)
==================================================
downloaded 37.0 MB


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trying URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'

Quitting from pbmc.Rmd:134-149 [run-scregclust]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'
---
Backtrace:
    ▆
 1. └─utils::download.file(url, fit_path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pbmc.Rmd' failed with diagnostics:
cannot open URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds'
--- failed re-building ‘pbmc.Rmd’

SUMMARY: processing the following files failed:
  ‘mouse.Rmd’ ‘pbmc.Rmd’

Error: Vignette re-building failed.
Execution halted