Error(s) in re-building vignettes:
--- re-building ‘gdal-config-quick-ref.Rmd’ using rmarkdown
--- finished re-building ‘gdal-config-quick-ref.Rmd’

--- re-building ‘raster-api-tutorial.Rmd’ using rmarkdown
--- finished re-building ‘raster-api-tutorial.Rmd’

--- re-building ‘raster-attribute-tables.Rmd’ using rmarkdown
--- finished re-building ‘raster-attribute-tables.Rmd’

--- re-building ‘vector-api-overview.Rmd’ using rmarkdown
[gannet:203681:0:203681] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x5564641eab88)
==== backtrace (tid: 203681) ====
 0  /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7f66771b2df4]
 1  /lib64/libucs.so.0(+0x17aed) [0x7f66771b4aed]
 2  /lib64/libucs.so.0(+0x17cbd) [0x7f66771b4cbd]
 3  /lib64/libc.so.6(+0x19c30) [0x7f668d12bc30]
 4  /lib64/libc.so.6(+0x8da09) [0x7f668d19fa09]
 5  /usr/local/clang20/lib/x86_64-unknown-linux-gnu/libc++.so.1(_ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEE6appendEPKcm+0x162) [0x7f668331cbe2]
 6  /usr/local/clang/lib64/libgdal.so.36(+0xd67e14) [0x7f6679f67e14]
 7  /usr/local/clang/lib64/libgdal.so.36(+0xd5da0c) [0x7f6679f5da0c]
 8  /usr/local/clang/lib64/libgdal.so.36(_ZN8OGRLayer15WriteArrowBatchEPK11ArrowSchemaP10ArrowArrayPKPKc+0x91a) [0x7f6679f5ae1a]
 9  /usr/local/clang/lib64/libgdal.so.36(+0xf227ae) [0x7f667a1227ae]
10  /usr/local/clang/lib64/libgdal.so.36(+0xf1e6db) [0x7f667a11e6db]
11  /usr/local/clang/lib64/libgdal.so.36(GDALVectorTranslate+0x27a1) [0x7f667a117471]
12  /data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/gdalraster/libs/gdalraster.so(_Z7ogr2ogrRKN4Rcpp6VectorILi16ENS_15PreserveStorageEEES4_RKNS_8NullableIS2_EES8_S8_+0x90a) [0x7f667ab3968a]
13  /data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/gdalraster/libs/gdalraster.so(_gdalraster_ogr2ogr+0xb5) [0x7f667aaeb995]
14  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d5bb) [0x556420ba75bb]
15  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc120) [0x556420bf6120]
16  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
17  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
18  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
19  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
20  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6]
21  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe84cc) [0x556420c024cc]
22  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc95b) [0x556420be695b]
23  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
24  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
25  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4f84) [0x556420bdef84]
26  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x556420bde55e]
27  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe89a7) [0x556420c029a7]
28  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b818) [0x556420c45818]
29  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xccbdf) [0x556420be6bdf]
30  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
31  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
32  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4f84) [0x556420bdef84]
33  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x556420bde55e]
34  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4f84) [0x556420bdef84]
35  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde250) [0x556420bf8250]
36  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc99a2) [0x556420be39a2]
37  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
38  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
39  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
40  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
41  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6]
42  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe84cc) [0x556420c024cc]
43  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc95b) [0x556420be695b]
44  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
45  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
46  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
47  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
48  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6]
49  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
50  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
51  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc153) [0x556420be6153]
52  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c]
53  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495]
54  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0]
55  /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc]
56  /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6]
57  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x116a4c) [0x556420c30a4c]
58  /data/gannet/ripley/R/R-clang/bin/exec/R(run_Rmainloop+0xbf) [0x556420c3254f]
59  /data/gannet/ripley/R/R-clang/bin/exec/R(+0x1185bb) [0x556420c325bb]
60  /data/gannet/ripley/R/R-clang/bin/exec/R(main+0x18) [0x556420b1bda8]
61  /lib64/libc.so.6(+0x35f5) [0x7f668d1155f5]
=================================

 *** caught segfault ***
address 0x4d200031ba1, cause 'unknown'

Traceback:
 1: ogr2ogr(zf_gpkg, mem_gpkg)
 2: eval(expr, envir)
 3: eval(expr, envir)
 4: withVisible(eval(expr, envir))
 5: withCallingHandlers(code, message = function (cnd) {    watcher$capture_plot_and_output()    if (on_message$capture) {        watcher$push(cnd)    }    if (on_message$silence) {        invokeRestart("muffleMessage")    }}, warning = function (cnd) {    if (getOption("warn") >= 2 || getOption("warn") < 0) {        return()    }    watcher$capture_plot_and_output()    if (on_warning$capture) {        cnd <- sanitize_call(cnd)        watcher$push(cnd)    }    if (on_warning$silence) {        invokeRestart("muffleWarning")    }}, error = function (cnd) {    watcher$capture_plot_and_output()    cnd <- sanitize_call(cnd)    watcher$push(cnd)    switch(on_error, continue = invokeRestart("eval_continue"),         stop = invokeRestart("eval_stop"), error = NULL)})
 6: eval(call)
 7: eval(call)
 8: with_handlers({    for (expr in tle$exprs) {        ev <- withVisible(eval(expr, envir))        watcher$capture_plot_and_output()        watcher$print_value(ev$value, ev$visible, envir)    }    TRUE}, handlers)
 9: doWithOneRestart(return(expr), restart)
10: withOneRestart(expr, restarts[[1L]])
11: withRestartList(expr, restarts[-nr])
12: doWithOneRestart(return(expr), restart)
13: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
14: withRestartList(expr, restarts)
15: withRestarts(with_handlers({    for (expr in tle$exprs) {        ev <- withVisible(eval(expr, envir))        watcher$capture_plot_and_output()        watcher$print_value(ev$value, ev$visible, envir)    }    TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
16: evaluate::evaluate(...)
17: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options))
18: in_dir(input_dir(), expr)
19: in_input_dir(evaluate(code, envir = env, new_device = FALSE,     keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options)))
20: eng_r(options)
21: block_exec(params)
22: call_block(x)
23: process_group(group)
24: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) {        if (progress && is.function(pb$interrupt))             pb$interrupt()        if (xfun::pkg_available("rlang", "1.0.0")) {            if (is_R_CMD_build() || is_R_CMD_check()) {                cnd = tryCatch(rlang::entrace(e), error = identity)                error <<- format(cnd)            }            else {                rlang::entrace(e)            }        }    })
25: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) {        if (progress && is.function(pb$interrupt))             pb$interrupt()        if (xfun::pkg_available("rlang", "1.0.0")) {            if (is_R_CMD_build() || is_R_CMD_check()) {                cnd = tryCatch(rlang::entrace(e), error = identity)                error <<- format(cnd)            }            else {                rlang::entrace(e)            }        }    }), function(loc) {    setwd(wd)    write_utf8(res, output %n% stdout())    paste0("\nQuitting from ", loc, if (!is.null(error))         paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
26: process_file(text, output)
27: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
28: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     output_dir = getwd(), ...)
29: vweave_rmarkdown(...)
30: engine$weave(file, quiet = quiet, encoding = enc)
31: doTryCatch(return(expr), name, parentenv, handler)
32: tryCatchOne(expr, names, parentenv, handlers[[1L]])
33: tryCatchList(expr, classes, parentenv, handlers)
34: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }}, error = function(e) {    OK <<- FALSE    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
35: tools:::.buildOneVignette("vector-api-overview.Rmd", "/data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/vign_test/gdalraster",     TRUE, FALSE, "vector-api-overview", "UTF-8", "/tmp/RtmpnYmlvs/working_dir/RtmpeV79Jm/file2ff893ff61021.rds")
An irrecoverable exception occurred. R is aborting now ...
SUMMARY: processing the following file failed:
  ‘vector-api-overview.Rmd’

Error: Vignette re-building failed.
Execution halted