Running ‘test-all.R’ [18s/58s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  > test_check("rgbif")
  Loading required package: rgbif
  [ FAIL 7 | WARN 2 | SKIP 137 | PASS 1271 ]
  
  ══ Skipped tests (137) ═════════════════════════════════════════════════════════
  • On CRAN (137): 'test-country_codes.r:4:3', 'test-dataset_export.R:3:1',
    'test-dataset_gridded.R:3:1', 'test-dataset_uuid_funs.R:19:3',
    'test-dataset_uuid_funs.R:78:3', 'test-derived_dataset.R:3:3',
    'test-derived_dataset.R:51:3', 'test-derived_dataset.R:186:3',
    'test-derived_dataset.R:347:3', 'test-downloads.R:3:3',
    'test-downloads.R:16:3', 'test-downloads.R:43:3', 'test-downloads.R:80:3',
    'test-downloads.R:87:3', 'test-downloads.R:101:3', 'test-downloads.R:116:3',
    'test-elevation.R:3:3', 'test-elevation.R:16:3', 'test-elevation.R:32:3',
    'test-elevation.R:59:3', 'test-elevation.R:84:3', 'test-enumeration.r:4:3',
    'test-enumeration.r:23:3', 'test-gbif_geocode.R:3:5',
    'test-gbif_geocode.R:60:3', 'test-gbif_issues_lookup.R:4:3',
    'test-gbif_issues_lookup.R:39:3', 'test-gbif_names.R:4:3',
    'test-gbif_names.R:28:3', 'test-gbif_photos.R:4:3', 'test-lit_search.R:5:5',
    'test-lit_search.R:120:3', 'test-map_fetch.R:3:1', 'test-mvt_fetch.R:4:3',
    'test-mvt_fetch.R:15:3', 'test-name_backbone.r:29:3',
    'test-name_backbone_checklist.R:4:3', 'test-name_backbone_checklist.R:184:3',
    'test-name_backbone_checklist.R:273:3',
    'test-name_backbone_checklist.R:368:3',
    'test-name_backbone_checklist.R:466:3',
    'test-name_backbone_checklist.R:478:3', 'test-name_lookup.r:4:3',
    'test-name_lookup.r:61:3', 'test-name_lookup.r:96:3',
    'test-name_lookup.r:115:3', 'test-name_lookup.r:130:3',
    'test-name_lookup.r:164:3', 'test-name_suggest.r:58:5',
    'test-name_usage.r:4:3', 'test-occ_count.r:83:3', 'test-occ_data.R:7:3',
    'test-occ_data.R:38:3', 'test-occ_data.R:71:3', 'test-occ_data.R:114:3',
    'test-occ_data.R:188:3', 'test-occ_data.R:334:3', 'test-occ_data.R:348:3',
    'test-occ_data.R:363:3', 'test-occ_data.R:381:3', 'test-occ_data.R:398:3',
    'test-occ_data.R:415:3', 'test-occ_data.R:434:3', 'test-occ_data.R:451:3',
    'test-occ_data.R:468:3', 'test-occ_data.R:485:3', 'test-occ_data.R:502:3',
    'test-occ_data.R:519:3', 'test-occ_data.R:537:3', 'test-occ_data.R:555:3',
    'test-occ_data.R:573:3', 'test-occ_data.R:588:3', 'test-occ_data.R:604:3',
    'test-occ_download.R:13:3', 'test-occ_download_cached.R:10:3',
    'test-occ_download_cached.R:75:3', 'test-occ_download_cached.R:115:3',
    'test-occ_download_cancel.R:2:3', 'test-occ_download_cancel.R:19:3',
    'test-occ_download_cancel.R:27:3',
    'test-occ_download_dataset_activity.R:4:3',
    'test-occ_download_dataset_activity.R:26:3',
    'test-occ_download_datasets.R:4:3', 'test-occ_download_datasets.R:27:3',
    'test-occ_download_get.R:2:3', 'test-occ_download_import.R:2:3',
    'test-occ_download_import.R:17:3', 'test-occ_download_import.R:40:3',
    'test-occ_download_import.R:57:3', 'test-occ_download_import.R:83:3',
    'test-occ_download_list.R:10:3', 'test-occ_download_list.R:28:3',
    'test-occ_download_list.R:51:3', 'test-occ_download_meta.R:2:3',
    'test-occ_download_meta.R:37:3', 'test-occ_download_prep.R:2:3',
    'test-occ_download_prep.R:37:3', 'test-occ_download_prep.R:54:3',
    'test-occ_download_queue.R:14:3', 'test-occ_download_queue.R:36:3',
    'test-occ_download_queue.R:77:3', 'test-occ_download_sql.R:3:3',
    'test-occ_download_sql.R:17:3', 'test-occ_download_wait.R:2:3',
    'test-occ_download_wait.R:21:3', 'test-occ_get.r:43:3',
    'test-occ_search.r:7:3', 'test-occ_search.r:35:3', 'test-occ_search.r:67:3',
    'test-occ_search.r:101:3', 'test-occ_search.r:114:3',
    'test-occ_search.r:128:3', 'test-occ_search.r:143:3',
    'test-occ_search.r:161:3', 'test-occ_search.r:178:3',
    'test-occ_search.r:195:3', 'test-occ_search.r:214:3',
    'test-occ_search.r:231:3', 'test-occ_search.r:248:3',
    'test-occ_search.r:266:3', 'test-occ_search.r:283:3',
    'test-occ_search.r:300:3', 'test-occ_search.r:318:3',
    'test-occ_search.r:336:3', 'test-occ_search.r:354:3',
    'test-occ_search.r:369:3', 'test-occ_search.r:386:3',
    'test-occ_search.r:436:3', 'test-occ_search.r:510:3',
    'test-organizations.r:4:3', 'test-organizations.r:67:3',
    'test-print_gbif.R:4:3', 'test-print_gbif.R:23:3', 'test-wkt_large.R:36:3',
    'test-wkt_large.R:72:3', 'test-wkt_large.R:91:3', 'test-wkt_parse.R:34:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-oai.R:5:5'): gbif_oai_identify ─────────────────────────────────
  Error in `path_to_connection(x)`: '' does not exist in current working directory
  ('/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rgbif.Rcheck/tests/testthat').
  Backtrace:
       ▆
    1. ├─vcr::use_cassette(...) at test-oai.R:4:3
    2. │ └─cassette$call_block(...)
    3. └─rgbif::gbif_oai_identify() at test-oai.R:5:5
    4.   ├─base::as.list(oai::id(url = gboai(), ...))
    5.   └─oai::id(url = gboai(), ...)
    6.     ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
    7.     └─base::lapply(url, id_, as = as, ...)
    8.       └─oai (local) FUN(X[[i]], ...)
    9.         ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
   10.         │ ├─base::lapply(...)
   11.         │ └─xml2::xml_children(m)
   12.         │   └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
   13.         ├─xml2::xml_children(xml2::read_xml(tt))
   14.         │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
   15.         ├─xml2::read_xml(tt)
   16.         └─xml2:::read_xml.character(tt)
   17.           └─xml2:::path_to_connection(x)
   18.             └─xml2:::check_path(path)
   19.               └─cli::cli_abort(msg, call = call)
   20.                 └─rlang::abort(...)
  ── Error ('test-oai.R:15:5'): gbif_oai_list_metadataformats ────────────────────
  Error in `path_to_connection(x)`: '' does not exist in current working directory
  ('/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rgbif.Rcheck/tests/testthat').
  Backtrace:
       ▆
    1. ├─vcr::use_cassette(...) at test-oai.R:14:3
    2. │ └─cassette$call_block(...)
    3. └─rgbif::gbif_oai_list_metadataformats() at test-oai.R:15:5
    4.   └─oai::list_metadataformats(url = gboai(), id = id, ...)
    5.     └─oai:::one_mf(id, url, ...)
    6.       ├─xml2::read_xml(out)
    7.       └─xml2:::read_xml.character(out)
    8.         └─xml2:::path_to_connection(x)
    9.           └─xml2:::check_path(path)
   10.             └─cli::cli_abort(msg, call = call)
   11.               └─rlang::abort(...)
  ── Error ('test-oai.R:25:5'): gbif_oai_list_sets ───────────────────────────────
  Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file ./oaidump_2025-07-21_17-56-47.7326971303f0250467axml
  Backtrace:
      ▆
   1. ├─vcr::use_cassette(...) at test-oai.R:24:3
   2. │ └─cassette$call_block(...)
   3. └─rgbif::gbif_oai_list_sets() at test-oai.R:25:5
   4.   └─oai::list_sets(url = gboai(), token = token, as = as, ...)
   5.     └─oai:::while_oai(url, args, token, as, ...)
  ── Error ('test-oai.R:37:5'): gbif_oai_list_identifiers ────────────────────────
  Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file ./oaidump_2025-07-21_17-56-47.8775721303f02b8b02ecxml
  Backtrace:
      ▆
   1. ├─vcr::use_cassette(...) at test-oai.R:35:3
   2. │ └─cassette$call_block(...)
   3. └─rgbif::gbif_oai_list_identifiers(from = "2019-01-15", until = "2019-01-30") at test-oai.R:37:5
   4.   └─oai::list_identifiers(...)
   5.     └─oai:::while_oai(url, args, token, as, ...)
  ── Error ('test-oai.R:59:5'): gbif_oai_get_records ─────────────────────────────
  Error in `path_to_connection(x)`: '' does not exist in current working directory
  ('/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rgbif.Rcheck/tests/testthat').
  Backtrace:
       ▆
    1. ├─vcr::use_cassette(...) at test-oai.R:58:3
    2. │ └─cassette$call_block(...)
    3. └─rgbif::gbif_oai_get_records("9c4e36c1-d3f9-49ce-8ec1-8c434fa9e6eb") at test-oai.R:59:5
    4.   └─oai::get_records(...)
    5.     ├─stats::setNames(...)
    6.     └─base::lapply(...)
    7.       └─oai (local) FUN(X[[i]], ...)
    8.         ├─xml2::read_xml(tt)
    9.         └─xml2:::read_xml.character(tt)
   10.           └─xml2:::path_to_connection(x)
   11.             └─xml2:::check_path(path)
   12.               └─cli::cli_abort(msg, call = call)
   13.                 └─rlang::abort(...)
  ── Failure ('test-occ_data.R:179:3'): scientificName basic use works - no synonyms ──
  hh$data$scientificName[1] not equal to "Pipistrellus hesperus (H.Allen, 1864)".
  1/1 mismatches
  x[1]: "Parastrellus hesperus (H.Allen, 1864)"
  y[1]: "Pipistrellus hesperus (H.Allen, 1864)"
  ── Failure ('test-occ_search.r:501:3'): scientificName basic use works - no synonyms ──
  hh$data$scientificName[1] not equal to "Pipistrellus hesperus (H.Allen, 1864)".
  1/1 mismatches
  x[1]: "Parastrellus hesperus (H.Allen, 1864)"
  y[1]: "Pipistrellus hesperus (H.Allen, 1864)"
  
  [ FAIL 7 | WARN 2 | SKIP 137 | PASS 1271 ]
  Error: Test failures
  Execution halted