Running ‘aareg.R’ [2s/3s]
  Comparing ‘aareg.Rout’ to ‘aareg.Rout.save’ ... OK
  Running ‘anova.R’ [2s/2s]
  Comparing ‘anova.Rout’ to ‘anova.Rout.save’ ... OK
  Running ‘bladder.R’ [2s/2s]
  Comparing ‘bladder.Rout’ to ‘bladder.Rout.save’ ... OK
  Running ‘book1.R’ [2s/3s]
  Comparing ‘book1.Rout’ to ‘book1.Rout.save’ ... OK
  Running ‘book2.R’ [2s/2s]
  Comparing ‘book2.Rout’ to ‘book2.Rout.save’ ... OK
  Running ‘book3.R’ [2s/3s]
  Comparing ‘book3.Rout’ to ‘book3.Rout.save’ ... OK
  Running ‘book4.R’ [2s/2s]
  Comparing ‘book4.Rout’ to ‘book4.Rout.save’ ... OK
  Running ‘book5.R’ [2s/2s]
  Comparing ‘book5.Rout’ to ‘book5.Rout.save’ ... OK
  Running ‘book6.R’ [2s/2s]
  Comparing ‘book6.Rout’ to ‘book6.Rout.save’ ... OK
  Running ‘book7.R’ [2s/3s]
  Comparing ‘book7.Rout’ to ‘book7.Rout.save’ ... OK
  Running ‘brier.R’ [14s/16s]
  Comparing ‘brier.Rout’ to ‘brier.Rout.save’ ... OK
  Running ‘cancer.R’ [3s/3s]
  Comparing ‘cancer.Rout’ to ‘cancer.Rout.save’ ... OK
  Running ‘checkSurv2.R’ [2s/4s]
  Comparing ‘checkSurv2.Rout’ to ‘checkSurv2.Rout.save’ ... OK
  Running ‘clogit.R’ [2s/2s]
  Comparing ‘clogit.Rout’ to ‘clogit.Rout.save’ ... OK
  Running ‘concordance.R’ [2s/3s]
  Comparing ‘concordance.Rout’ to ‘concordance.Rout.save’ ... OK
  Running ‘concordance2.R’ [7s/9s]
  Comparing ‘concordance2.Rout’ to ‘concordance2.Rout.save’ ... OK
  Running ‘concordance3.R’ [3s/4s]
  Comparing ‘concordance3.Rout’ to ‘concordance3.Rout.save’ ... OK
  Running ‘counting.R’ [2s/2s]
  Comparing ‘counting.Rout’ to ‘counting.Rout.save’ ... OK
  Running ‘coxsurv.R’ [2s/3s]
  Comparing ‘coxsurv.Rout’ to ‘coxsurv.Rout.save’ ... OK
  Running ‘coxsurv2.R’ [2s/3s]
  Comparing ‘coxsurv2.Rout’ to ‘coxsurv2.Rout.save’ ... OK
  Running ‘coxsurv3.R’ [2s/3s]
  Comparing ‘coxsurv3.Rout’ to ‘coxsurv3.Rout.save’ ... OK
  Running ‘coxsurv4.R’ [2s/3s]
  Comparing ‘coxsurv4.Rout’ to ‘coxsurv4.Rout.save’ ... OK
  Running ‘coxsurv5.R’ [2s/3s]
  Comparing ‘coxsurv5.Rout’ to ‘coxsurv5.Rout.save’ ... OK
  Running ‘coxsurv6.R’ [3s/4s]
  Comparing ‘coxsurv6.Rout’ to ‘coxsurv6.Rout.save’ ... OK
  Running ‘detail.R’ [2s/3s]
  Comparing ‘detail.Rout’ to ‘detail.Rout.save’ ... OK
  Running ‘difftest.R’ [2s/2s]
  Comparing ‘difftest.Rout’ to ‘difftest.Rout.save’ ... OK
  Running ‘doaml.R’ [2s/3s]
  Comparing ‘doaml.Rout’ to ‘doaml.Rout.save’ ... OK
  Running ‘doublecolon.R’ [2s/2s]
  Comparing ‘doublecolon.Rout’ to ‘doublecolon.Rout.save’ ... OK
  Running ‘doweight.R’ [2s/2s]
  Comparing ‘doweight.Rout’ to ‘doweight.Rout.save’ ... OK
  Running ‘dropspecial.R’ [2s/2s]
  Comparing ‘dropspecial.Rout’ to ‘dropspecial.Rout.save’ ... OK
  Running ‘ekm.R’ [2s/3s]
  Comparing ‘ekm.Rout’ to ‘ekm.Rout.save’ ... OK
  Running ‘expected.R’ [2s/3s]
  Comparing ‘expected.Rout’ to ‘expected.Rout.save’ ... OK
  Running ‘expected2.R’ [2s/3s]
  Comparing ‘expected2.Rout’ to ‘expected2.Rout.save’ ... OK
  Running ‘factor.R’ [2s/2s]
  Comparing ‘factor.Rout’ to ‘factor.Rout.save’ ... OK
  Running ‘factor2.R’ [2s/2s]
  Comparing ‘factor2.Rout’ to ‘factor2.Rout.save’ ... OK
  Running ‘finegray.R’ [2s/2s]
  Comparing ‘finegray.Rout’ to ‘finegray.Rout.save’ ... OK
  Running ‘fr_cancer.R’ [2s/2s]
  Comparing ‘fr_cancer.Rout’ to ‘fr_cancer.Rout.save’ ... OK
  Running ‘fr_kidney.R’ [2s/3s]
  Comparing ‘fr_kidney.Rout’ to ‘fr_kidney.Rout.save’ ... OK
  Running ‘fr_lung.R’ [2s/3s]
  Comparing ‘fr_lung.Rout’ to ‘fr_lung.Rout.save’ ... OK
  Running ‘fr_ovarian.R’ [2s/2s]
  Comparing ‘fr_ovarian.Rout’ to ‘fr_ovarian.Rout.save’ ... OK
  Running ‘fr_rat1.R’ [2s/2s]
  Comparing ‘fr_rat1.Rout’ to ‘fr_rat1.Rout.save’ ... OK
  Running ‘fr_resid.R’ [2s/2s]
  Comparing ‘fr_resid.Rout’ to ‘fr_resid.Rout.save’ ... OK
  Running ‘fr_simple.R’ [2s/2s]
  Comparing ‘fr_simple.Rout’ to ‘fr_simple.Rout.save’ ... OK
  Running ‘frailty.R’ [2s/2s]
  Comparing ‘frailty.Rout’ to ‘frailty.Rout.save’ ... OK
  Running ‘frank.R’ [2s/3s]
  Comparing ‘frank.Rout’ to ‘frank.Rout.save’ ... OK
  Running ‘infcox.R’ [2s/2s]
  Comparing ‘infcox.Rout’ to ‘infcox.Rout.save’ ... OK
  Running ‘jasa.R’ [2s/2s]
  Comparing ‘jasa.Rout’ to ‘jasa.Rout.save’ ... OK
  Running ‘model.matrix.R’ [2s/2s]
  Comparing ‘model.matrix.Rout’ to ‘model.matrix.Rout.save’ ... OK
  Running ‘mstate.R’ [2s/2s]
  Comparing ‘mstate.Rout’ to ‘mstate.Rout.save’ ... OK
  Running ‘mstate2.R’ [2s/3s]
  Comparing ‘mstate2.Rout’ to ‘mstate2.Rout.save’ ... OK
  Running ‘mstrata.R’ [2s/3s]
  Comparing ‘mstrata.Rout’ to ‘mstrata.Rout.save’ ... OK
  Running ‘multi2.R’ [2s/3s]
  Comparing ‘multi2.Rout’ to ‘multi2.Rout.save’ ... OK
  Running ‘multi3.R’ [3s/3s]
  Comparing ‘multi3.Rout’ to ‘multi3.Rout.save’ ... OK
  Running ‘multistate.R’ [3s/3s]
  Comparing ‘multistate.Rout’ to ‘multistate.Rout.save’ ... OK
  Running ‘neardate.R’ [2s/2s]
  Comparing ‘neardate.Rout’ to ‘neardate.Rout.save’ ... OK
  Running ‘nested.R’ [2s/2s]
  Comparing ‘nested.Rout’ to ‘nested.Rout.save’ ... OK
  Running ‘nsk.R’ [2s/2s]
  Comparing ‘nsk.Rout’ to ‘nsk.Rout.save’ ... OK
  Running ‘ovarian.R’ [2s/2s]
  Comparing ‘ovarian.Rout’ to ‘ovarian.Rout.save’ ... OK
  Running ‘overlap.R’ [2s/2s]
  Comparing ‘overlap.Rout’ to ‘overlap.Rout.save’ ... OK
  Running ‘prednew.R’ [2s/2s]
  Comparing ‘prednew.Rout’ to ‘prednew.Rout.save’ ... OK
  Running ‘predsurv.R’ [2s/2s]
  Comparing ‘predsurv.Rout’ to ‘predsurv.Rout.save’ ... OK
  Running ‘pseudo.R’ [3s/4s]
  Comparing ‘pseudo.Rout’ to ‘pseudo.Rout.save’ ... OK
  Running ‘pspline.R’ [2s/2s]
  Comparing ‘pspline.Rout’ to ‘pspline.Rout.save’ ... OK
  Running ‘pyear.R’ [2s/2s]
  Comparing ‘pyear.Rout’ to ‘pyear.Rout.save’ ... OK
  Running ‘quantile.R’ [2s/3s]
  Comparing ‘quantile.Rout’ to ‘quantile.Rout.save’ ... OK
  Running ‘r_lung.R’ [2s/3s]
  Comparing ‘r_lung.Rout’ to ‘r_lung.Rout.save’ ... OK
  Running ‘r_resid.R’ [2s/3s]
  Comparing ‘r_resid.Rout’ to ‘r_resid.Rout.save’ ... OK
  Running ‘r_sas.R’ [6s/7s]
  Comparing ‘r_sas.Rout’ to ‘r_sas.Rout.save’ ...400,402d399
< Warning message:
< In survreg.fit(X, Y, weights, offset, init = init, controlvals = control,  :
<   Ran out of iterations and did not converge
  Running ‘r_scale.R’ [2s/3s]
  Comparing ‘r_scale.Rout’ to ‘r_scale.Rout.save’ ... OK
  Running ‘r_stanford.R’ [2s/2s]
  Comparing ‘r_stanford.Rout’ to ‘r_stanford.Rout.save’ ... OK
  Running ‘r_strata.R’ [2s/3s]
  Comparing ‘r_strata.Rout’ to ‘r_strata.Rout.save’ ... OK
  Running ‘r_tdist.R’ [2s/3s]
  Comparing ‘r_tdist.Rout’ to ‘r_tdist.Rout.save’ ... OK
  Running ‘r_user.R’ [2s/2s]
  Comparing ‘r_user.Rout’ to ‘r_user.Rout.save’ ... OK
  Running ‘ratetable.R’ [2s/2s]
  Comparing ‘ratetable.Rout’ to ‘ratetable.Rout.save’ ... OK
  Running ‘residsf.R’ [2s/2s]
  Comparing ‘residsf.Rout’ to ‘residsf.Rout.save’ ... OK
  Running ‘royston.R’ [2s/3s]
  Comparing ‘royston.Rout’ to ‘royston.Rout.save’ ... OK
  Running ‘rttright.R’ [2s/3s]
  Comparing ‘rttright.Rout’ to ‘rttright.Rout.save’ ... OK
  Running ‘singtest.R’ [2s/2s]
  Comparing ‘singtest.Rout’ to ‘singtest.Rout.save’ ... OK
  Running ‘strata2.R’ [2s/3s]
  Comparing ‘strata2.Rout’ to ‘strata2.Rout.save’ ... OK
  Running ‘stratatest.R’ [2s/2s]
  Comparing ‘stratatest.Rout’ to ‘stratatest.Rout.save’ ... OK
  Running ‘summary_survfit.R’ [2s/3s]
  Comparing ‘summary_survfit.Rout’ to ‘summary_survfit.Rout.save’ ... OK
  Running ‘surv.R’ [2s/2s]
  Comparing ‘surv.Rout’ to ‘surv.Rout.save’ ... OK
  Running ‘survSplit.R’ [2s/2s]
  Comparing ‘survSplit.Rout’ to ‘survSplit.Rout.save’ ... OK
  Running ‘survcheck.R’ [2s/2s]
  Comparing ‘survcheck.Rout’ to ‘survcheck.Rout.save’ ... OK
  Running ‘survfit1.R’ [2s/3s]
  Comparing ‘survfit1.Rout’ to ‘survfit1.Rout.save’ ... OK
  Running ‘survfit2.R’ [2s/2s]
  Comparing ‘survfit2.Rout’ to ‘survfit2.Rout.save’ ... OK
  Running ‘survreg1.R’ [2s/2s]
  Comparing ‘survreg1.Rout’ to ‘survreg1.Rout.save’ ... OK
  Running ‘survreg2.R’ [3s/4s]
  Comparing ‘survreg2.Rout’ to ‘survreg2.Rout.save’ ... OK
  Running ‘survtest.R’ [2s/3s]
  Comparing ‘survtest.Rout’ to ‘survtest.Rout.save’ ... OK
  Running ‘testci.R’ [2s/3s]
  Comparing ‘testci.Rout’ to ‘testci.Rout.save’ ... OK
  Running ‘testci2.R’ [2s/3s]
  Comparing ‘testci2.Rout’ to ‘testci2.Rout.save’ ... OK
  Running ‘testnull.R’ [2s/2s]
  Comparing ‘testnull.Rout’ to ‘testnull.Rout.save’ ... OK
  Running ‘testreg.R’ [2s/2s]
  Comparing ‘testreg.Rout’ to ‘testreg.Rout.save’ ... OK
  Running ‘tiedtime.R’ [2s/2s]
  Comparing ‘tiedtime.Rout’ to ‘tiedtime.Rout.save’ ... OK
  Running ‘tmerge.R’ [2s/2s]
  Comparing ‘tmerge.Rout’ to ‘tmerge.Rout.save’ ... OK
  Running ‘tmerge2.R’ [2s/2s]
  Comparing ‘tmerge2.Rout’ to ‘tmerge2.Rout.save’ ... OK
  Running ‘tmerge3.R’ [2s/2s]
  Comparing ‘tmerge3.Rout’ to ‘tmerge3.Rout.save’ ... OK
  Running ‘tt.R’ [2s/3s]
  Comparing ‘tt.Rout’ to ‘tt.Rout.save’ ... OK
  Running ‘tt2.R’ [3s/4s]
  Comparing ‘tt2.Rout’ to ‘tt2.Rout.save’ ... OK
  Running ‘turnbull.R’ [2s/3s]
  Comparing ‘turnbull.Rout’ to ‘turnbull.Rout.save’ ... OK
  Running ‘update.R’ [2s/2s]
  Comparing ‘update.Rout’ to ‘update.Rout.save’ ... OK
  Running ‘yates0.R’ [0s/0s]
  Comparing ‘yates0.Rout’ to ‘yates0.Rout.save’ ... OK
  Running ‘yates1.R’ [2s/3s]
  Comparing ‘yates1.Rout’ to ‘yates1.Rout.save’ ... OK
  Running ‘yates2.R’ [2s/3s]
  Running ‘zph.R’ [2s/3s]
  Comparing ‘zph.Rout’ to ‘zph.Rout.save’ ... OK