Running ‘testthat.R’ [105s/110s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(xgboost)
  > 
  > test_check("xgboost", reporter = ProgressReporter)
  ✔ | F W  S  OK | Context
  
  ⠏ |          0 | basic                                                          
  ⠏ |          0 | basic functions                                                
  ⠋ |          1 | basic functions                                                [18:58:16] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [1]	train-rmse:1.678965 
  [2]	train-rmse:1.678965 
  [3]	train-rmse:1.524624 
  [4]	train-rmse:1.441523 
  [5]	train-rmse:1.437758 
  [6]	train-rmse:1.377895 
  [7]	train-rmse:1.305894 
  [8]	train-rmse:1.336120 
  [9]	train-rmse:1.316072 
  [10]	train-rmse:1.316031 
  [11]	train-rmse:1.319404 
  [12]	train-rmse:1.235097 
  [13]	train-rmse:1.225430 
  [14]	train-rmse:1.221079 
  [15]	train-rmse:1.235220 
  [16]	train-rmse:1.219153 
  [17]	train-rmse:1.226439 
  [18]	train-rmse:1.235026 
  [19]	train-rmse:1.244651 
  [20]	train-rmse:1.253197 
  [21]	train-rmse:1.262494 
  [22]	train-rmse:1.272865 
  [23]	train-rmse:1.276073 
  [24]	train-rmse:1.277040 
  [25]	train-rmse:1.287974 
  [26]	train-rmse:1.289816 
  [27]	train-rmse:1.292365 
  [28]	train-rmse:1.282785 
  [29]	train-rmse:1.283805 
  [30]	train-rmse:1.290661 
  [31]	train-rmse:1.289439 
  [32]	train-rmse:1.281995 
  [18:58:16] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  
  ⠸ |         14 | basic functions                                                [18:58:16] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [18:58:16] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  
  ⠋ |         31 | basic functions                                                [1]	train-error:0.028405 
  [18:58:16] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  
  ⠋ |         41 | basic functions                                                [18:58:16] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  
  ⠋ |         51 | basic functions                                                [1]	train-logloss:0.439409 
  [2]	train-logloss:0.299260 
  [3]	train-logloss:0.209937 
  [4]	train-logloss:0.150151 
  
  ⠇ |         59 | basic functions                                                
  ⠏ |         60 | basic functions                                                [1]	train-logloss:0.233470+0.001565	test-logloss:0.233607+0.004930 
  [2]	train-logloss:0.136851+0.001767	test-logloss:0.137010+0.006645 
  [1]	train-logloss:0.233482+0.001761	test-logloss:0.233527+0.005591 
  [2]	train-logloss:0.136860+0.002158	test-logloss:0.136933+0.007299 
  
  ⠋ |         71 | basic functions                                                
  ⠙ |         72 | basic functions                                                
  ⠹ |         73 | basic functions                                                
  ⠦ |         77 | basic functions                                                [1]	train-logloss:0.380598 
  [2]	train-logloss:0.247331 
  [3]	train-logloss:0.175047 
  [4]	train-logloss:0.122301 
  [5]	train-logloss:0.089889 
  [1]	train-logloss:0.497338 
  [2]	train-logloss:0.357306 
  [3]	train-logloss:0.257215 
  [4]	train-logloss:0.184518 
  [5]	train-logloss:0.132113 
  
  ⠙ |         82 | basic functions                                                [1]	train-error:0.046522	train-auc:0.958228	train-logloss:0.233376 
  [2]	train-error:0.022263	train-auc:0.981413	train-logloss:0.136658 
  [1]	train-merror:0.040000 
  [2]	train-merror:0.026667 
  
  ⠏ |         90 | basic functions                                                [1]	train-error:0.046522	train-auc:0.958228	train-logloss:0.482541 
  [2]	train-error:0.046522	train-auc:0.987161	train-logloss:0.359536 
  
  ⠸ |         94 | basic functions                                                
  ⠇ |         99 | basic functions                                                
  ✔ |        100 | basic functions [6.0s]
  
  ⠏ |          0 | callbacks                                                      
  ⠏ |          0 | callbacks                                                      [1]	train-auc:0.900000	test-auc:0.800000 
  
  ⠙ |         12 | callbacks                                                      
  ⠴ |         26 | callbacks                                                      
  ⠙ |         32 | callbacks                                                      
  ⠏ |         40 | callbacks                                                      
  ⠙ |   1     51 | callbacks                                                      
  ⠹ |   1     62 | callbacks                                                      [18:58:22] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [1]	train-auc:0.829749 
  Will train until train_auc hasn't improved in 3 rounds.
  
  [2]	train-auc:0.829749 
  [3]	train-auc:0.829749 
  [4]	train-auc:0.829749 
  Stopping. Best iteration:
  [1]	train-auc:0.829749
  
  
  ⠏ |   1     69 | callbacks                                                      
  ⠼ |   1     74 | callbacks                                                      
  ⠇ |   1     78 | callbacks                                                      
  ⠼ |   1     84 | callbacks                                                      
  ✔ |   1     95 | callbacks [1.7s]
  ────────────────────────────────────────────────────────────────────────────────
  Warning ('test_callbacks.R:200:3'): cb.save.model works as expected
  one argument not used by format 'xgboost.json'
  Backtrace:
      ▆
   1. └─xgboost::xgb.train(...) at test_callbacks.R:200:3
   2.   └─xgboost (local) f()
   3.     ├─xgboost::xgb.save(env$bst, sprintf(save_name, env$iteration))
   4.     └─base::sprintf(save_name, env$iteration)
  ────────────────────────────────────────────────────────────────────────────────
  
  ⠏ |          0 | config                                                         
  ⠏ |          0 | Test global configuration                                      
  ✔ |          8 | Test global configuration
  
  ⠏ |          0 | custom_objective                                               
  ⠏ |          0 | Test models with custom objective                              [1]	eval-error:0.042831	train-error:0.046522 
  [2]	eval-error:0.021726	train-error:0.022263 
  
  ⠙ |          2 | Test models with custom objective                              
  ⠼ |          5 | Test models with custom objective                              [1]	eval-error:0.042831	train-error:0.046522 
  [2]	eval-error:0.021726	train-error:0.022263 
  [3]	eval-error:0.018001	train-error:0.015200 
  [4]	eval-error:0.018001	train-error:0.015200 
  [5]	eval-error:0.006207	train-error:0.007063 
  [6]	eval-error:0.000000	train-error:0.001228 
  [7]	eval-error:0.000000	train-error:0.001228 
  [8]	eval-error:0.000000	train-error:0.001228 
  [9]	eval-error:0.000000	train-error:0.001228 
  [10]	eval-error:0.000000	train-error:0.000000 
  [1]	eval-error:0.042831	train-error:0.046522 
  [2]	eval-error:0.021726	train-error:0.022263 
  
  ⠏ |         10 | Test models with custom objective                              
  ✔ |         12 | Test models with custom objective
  
  ⠏ |          0 | dmatrix                                                        
  ⠏ |          0 | testing xgb.DMatrix functionality                              
  ⠸ |         14 | testing xgb.DMatrix functionality                              [18:58:24] 6513x126 matrix with 143286 entries loaded from /tmp/Rtmpx840bX/xgb.DMatrix_31412c5b471eab
  
  ⠹ |   1     32 | testing xgb.DMatrix functionality                              
  ⠇ |   1     38 | testing xgb.DMatrix functionality                              
  ✔ |   1     44 | testing xgb.DMatrix functionality
  ────────────────────────────────────────────────────────────────────────────────
  Warning ('test_dmatrix.R:125:3'): xgb.DMatrix: getinfo & setinfo
  NAs introduced by coercion
  Backtrace:
      ▆
   1. ├─testthat::expect_error(setinfo(dtest, "weight", rep("a", nrow(test_data)))) at test_dmatrix.R:125:3
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat (local) .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. ├─xgboost::setinfo(dtest, "weight", rep("a", nrow(test_data)))
   7. └─xgboost:::setinfo.xgb.DMatrix(dtest, "weight", rep("a", nrow(test_data)))
  ────────────────────────────────────────────────────────────────────────────────
  
  ⠏ |          0 | gc_safety                                                      
  ⠏ |          0 | Garbage Collection Safety Check                                [1]	train-logloss:0.233376 
  [2]	train-logloss:0.136658 
  
  ⠋ |          1 | Garbage Collection Safety Check                                
  ✔ |          1 | Garbage Collection Safety Check [90.2s]
  
  ⠏ |          0 | glm                                                            
  ⠏ |          0 | Test generalized linear models                                 
  ⠴ |          6 | Test generalized linear models                                 
  ⠧ |          8 | Test generalized linear models                                 [1]	eval-error:0.002483	train-error:0.004760 
  Multiple eval metrics are present. Will use train_error for early stopping.
  Will train until train_error hasn't improved in 1 rounds.
  
  [2]	eval-error:0.000621	train-error:0.002610 
  [3]	eval-error:0.000000	train-error:0.001842 
  [4]	eval-error:0.000000	train-error:0.001228 
  [5]	eval-error:0.000000	train-error:0.000614 
  [6]	eval-error:0.000000	train-error:0.000614 
  Stopping. Best iteration:
  [5]	eval-error:0.000000	train-error:0.000614
  
  
  ⠙ |         12 | Test generalized linear models                                 [1]	eval-error:0.002483	train-error:0.004760 
  Multiple eval metrics are present. Will use train_error for early stopping.
  Will train until train_error hasn't improved in 1 rounds.
  
  [2]	eval-error:0.000621	train-error:0.002610 
  [3]	eval-error:0.000000	train-error:0.001842 
  [4]	eval-error:0.000000	train-error:0.001228 
  [5]	eval-error:0.000000	train-error:0.000614 
  [6]	eval-error:0.000000	train-error:0.000614 
  Stopping. Best iteration:
  [5]	eval-error:0.000000	train-error:0.000614
  
  
  ⠹ |         13 | Test generalized linear models                                 
  ✔ |         13 | Test generalized linear models
  
  ⠏ |          0 | helpers                                                        
  ⠏ |          0 | Test helper functions                                          
  ⠋ |          1 | Test helper functions                                          [1]	train-logloss:0.636592 
  [1]	train-rmse:1.940066 
  [2]	train-rmse:1.560864 
  [3]	train-rmse:1.277414 
  [4]	train-rmse:1.068562 
  [5]	train-rmse:0.903897 
  [6]	train-rmse:0.763228 
  [7]	train-rmse:0.664924 
  [8]	train-rmse:0.570358 
  [9]	train-rmse:0.507416 
  [10]	train-rmse:0.458599 
  [11]	train-rmse:0.394349 
  [12]	train-rmse:0.355794 
  [13]	train-rmse:0.305484 
  [14]	train-rmse:0.271176 
  [15]	train-rmse:0.259943 
  [16]	train-rmse:0.238429 
  [17]	train-rmse:0.228003 
  [18]	train-rmse:0.212117 
  [19]	train-rmse:0.187830 
  [20]	train-rmse:0.173381 
  [21]	train-rmse:0.164001 
  [22]	train-rmse:0.156113 
  [23]	train-rmse:0.143242 
  [24]	train-rmse:0.130215 
  [25]	train-rmse:0.120160 
  [26]	train-rmse:0.112119 
  [27]	train-rmse:0.104753 
  [28]	train-rmse:0.096786 
  [29]	train-rmse:0.089361 
  [30]	train-rmse:0.083706 
  
  ⠧ |         48 | Test helper functions                                          
  ⠦ |        167 | Test helper functions                                          [1]	train-rmse:1.940066 
  [2]	train-rmse:1.675038 
  [3]	train-rmse:1.462383 
  [4]	train-rmse:1.283198 
  [5]	train-rmse:1.155542 
  [6]	train-rmse:1.049559 
  [7]	train-rmse:0.942910 
  [8]	train-rmse:0.859371 
  [9]	train-rmse:0.774970 
  [10]	train-rmse:0.725452 
  [11]	train-rmse:0.679127 
  [12]	train-rmse:0.628614 
  [13]	train-rmse:0.594549 
  [14]	train-rmse:0.535545 
  [15]	train-rmse:0.485623 
  [16]	train-rmse:0.460187 
  [17]	train-rmse:0.413632 
  [18]	train-rmse:0.403692 
  [19]	train-rmse:0.385314 
  [20]	train-rmse:0.366653 
  [21]	train-rmse:0.354532 
  [22]	train-rmse:0.326526 
  [23]	train-rmse:0.316875 
  [24]	train-rmse:0.301910 
  [25]	train-rmse:0.285458 
  [26]	train-rmse:0.275437 
  [27]	train-rmse:0.267556 
  [28]	train-rmse:0.263727 
  [29]	train-rmse:0.253460 
  [30]	train-rmse:0.235433 
  
  ⠏ |        250 | Test helper functions                                          
  ⠇ |        369 | Test helper functions                                          
  ⠦ |        467 | Test helper functions                                          
  ⠹ |        553 | Test helper functions                                          
  ⠼ |        645 | Test helper functions                                          
  ⠴ |        676 | Test helper functions                                          
  ⠹ |        683 | Test helper functions                                          
  ⠏ |        690 | Test helper functions                                          
  ⠋ |        691 | Test helper functions                                          
  ⠙ |      1 691 | Test helper functions                                          
  ⠸ |      1 693 | Test helper functions                                          
  ⠦ |      1 716 | Test helper functions                                          
  ✔ |      1 739 | Test helper functions [2.7s]
  
  ⠏ |          0 | interaction_constraints                                        
  ⠏ |          0 | interaction constraints                                        
  ⠋ |          1 | interaction constraints                                        
  ✔ |          1 | interaction constraints [2.9s]
  
  ⠏ |          0 | interactions                                                   
  ⠏ |          0 | Test prediction of feature interactions                        [1]	train-logloss:0.482541 
  [2]	train-logloss:0.359536 
  [3]	train-logloss:0.279935 
  [4]	train-logloss:0.218599 
  
  ✔ |          8 | Test prediction of feature interactions
  
  ⠏ |          0 | io                                                             
  ⠏ |          0 | Test model IO.                                                 [1]	train-logloss:0.439409 
  [2]	train-logloss:0.299260 
  [3]	train-logloss:0.209937 
  [4]	train-logloss:0.150151 
  [5]	train-logloss:0.108673 
  [6]	train-logloss:0.079348 
  [7]	train-logloss:0.058385 
  [8]	train-logloss:0.043147 
  
  ✔ |          2 | Test model IO.
  
  ⠏ |          0 | model_compatibility                                            
  ⠏ |          0 | Models from previous versions of XGBoost can be loaded         
  ⠋ |   1      0 | Models from previous versions of XGBoost can be loaded         
  ✖ | 1 1      0 | Models from previous versions of XGBoost can be loaded [1.4s]
  ────────────────────────────────────────────────────────────────────────────────
  Warning ('test_model_compatibility.R:67:3'): Models from previous versions of XGBoost can be loaded
  cannot open URL 'https://xgboost-ci-jenkins-artifacts.s3-us-west-2.amazonaws.com/xgboost_r_model_compatibility_test.zip': HTTP status was '403 Forbidden'
  Backtrace:
      ▆
   1. └─utils::download.file(...) at test_model_compatibility.R:67:3
  
  Error ('test_model_compatibility.R:67:3'): Models from previous versions of XGBoost can be loaded
  Error in `download.file(paste("https://", bucket, ".s3-", region, ".amazonaws.com/", 
      file_name, sep = ""), destfile = zipfile, mode = "wb", quiet = TRUE)`: cannot open URL 'https://xgboost-ci-jenkins-artifacts.s3-us-west-2.amazonaws.com/xgboost_r_model_compatibility_test.zip'
  Backtrace:
      ▆
   1. └─utils::download.file(...) at test_model_compatibility.R:67:3
  ────────────────────────────────────────────────────────────────────────────────
  
  ⠏ |          0 | parameter_exposure                                             
  ⠏ |          0 | Test model params and call are exposed to R                    
  ✔ |          6 | Test model params and call are exposed to R
  
  ⠏ |          0 | ranking                                                        
  ⠏ |          0 | Learning to rank                                               [1]	train-auc:0.575000	train-aucpr:0.550000 
  [2]	train-auc:0.650000	train-aucpr:0.700000 
  [3]	train-auc:0.725000	train-aucpr:0.850000 
  [4]	train-auc:0.800000	train-aucpr:1.000000 
  [5]	train-auc:0.800000	train-aucpr:1.000000 
  [6]	train-auc:0.800000	train-aucpr:1.000000 
  [7]	train-auc:0.800000	train-aucpr:1.000000 
  [8]	train-auc:0.800000	train-aucpr:1.000000 
  [9]	train-auc:0.800000	train-aucpr:1.000000 
  [10]	train-auc:0.800000	train-aucpr:1.000000 
  [1]	train-auc:0.575000	train-aucpr:0.550000 
  [2]	train-auc:0.650000	train-aucpr:0.700000 
  [3]	train-auc:0.725000	train-aucpr:0.850000 
  [4]	train-auc:0.725000	train-aucpr:0.850000 
  [5]	train-auc:0.725000	train-aucpr:0.850000 
  [6]	train-auc:0.725000	train-aucpr:0.850000 
  [7]	train-auc:0.725000	train-aucpr:0.850000 
  [8]	train-auc:0.800000	train-aucpr:1.000000 
  [9]	train-auc:0.800000	train-aucpr:1.000000 
  [10]	train-auc:0.800000	train-aucpr:1.000000 
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  [19:00:02] WARNING: src/c_api/c_api.cc:935: `ntree_limit` is deprecated, use `iteration_range` instead.
  
  ✔ |         14 | Learning to rank
  
  ⠏ |          0 | unicode                                                        
  ⠏ |          0 | Test Unicode handling                                          [1]	train-error:0.046522 
  [2]	train-error:0.022263 
  
  ✔ |          3 | Test Unicode handling
  
  ⠏ |          0 | update                                                         
  ⠏ |          0 | update trees in an existing model                              [19:00:03] WARNING: src/gbm/gbtree.cc:84: DANGER AHEAD: You have manually specified `updater` parameter. The `tree_method` parameter will be ignored. Incorrect sequence of updaters will produce undefined behavior. For common uses, we recommend using `tree_method` parameter instead.
  [19:00:03] WARNING: src/gbm/gbtree.cc:84: DANGER AHEAD: You have manually specified `updater` parameter. The `tree_method` parameter will be ignored. Incorrect sequence of updaters will produce undefined behavior. For common uses, we recommend using `tree_method` parameter instead.
  [19:00:03] WARNING: src/gbm/gbtree.cc:84: DANGER AHEAD: You have manually specified `updater` parameter. The `tree_method` parameter will be ignored. Incorrect sequence of updaters will produce undefined behavior. For common uses, we recommend using `tree_method` parameter instead.
  
  ⠋ |          1 | update trees in an existing model                              [19:00:03] WARNING: src/gbm/gbtree.cc:84: DANGER AHEAD: You have manually specified `updater` parameter. The `tree_method` parameter will be ignored. Incorrect sequence of updaters will produce undefined behavior. For common uses, we recommend using `tree_method` parameter instead.
  [19:00:03] WARNING: src/gbm/gbtree.cc:84: DANGER AHEAD: You have manually specified `updater` parameter. The `tree_method` parameter will be ignored. Incorrect sequence of updaters will produce undefined behavior. For common uses, we recommend using `tree_method` parameter instead.
  [19:00:03] WARNING: src/gbm/gbtree.cc:84: DANGER AHEAD: You have manually specified `updater` parameter. The `tree_method` parameter will be ignored. Incorrect sequence of updaters will produce undefined behavior. For common uses, we recommend using `tree_method` parameter instead.
  
  ⠸ |         14 | update trees in an existing model                              [19:00:03] WARNING: src/gbm/gbtree.cc:84: DANGER AHEAD: You have manually specified `updater` parameter. The `tree_method` parameter will be ignored. Incorrect sequence of updaters will produce undefined behavior. For common uses, we recommend using `tree_method` parameter instead.
  [19:00:03] WARNING: src/gbm/gbtree.cc:84: DANGER AHEAD: You have manually specified `updater` parameter. The `tree_method` parameter will be ignored. Incorrect sequence of updaters will produce undefined behavior. For common uses, we recommend using `tree_method` parameter instead.
  
  ✔ |         22 | update trees in an existing model
  
  ══ Results ═════════════════════════════════════════════════════════════════════
  Duration: 107.5 s
  
  ── Skipped tests (1) ───────────────────────────────────────────────────────────
  • empty test (1): 'test_helpers.R:322:1'
  
  ── Failed tests ────────────────────────────────────────────────────────────────
  Error ('test_model_compatibility.R:67:3'): Models from previous versions of XGBoost can be loaded
  Error in `download.file(paste("https://", bucket, ".s3-", region, ".amazonaws.com/", 
      file_name, sep = ""), destfile = zipfile, mode = "wb", quiet = TRUE)`: cannot open URL 'https://xgboost-ci-jenkins-artifacts.s3-us-west-2.amazonaws.com/xgboost_r_model_compatibility_test.zip'
  Backtrace:
      ▆
   1. └─utils::download.file(...) at test_model_compatibility.R:67:3
  
  [ FAIL 1 | WARN 3 | SKIP 1 | PASS 1068 ]
  Error: Test failures
  Execution halted