Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘PowerRelation.R’ ‘SocialRanking.R’ ‘copeland.R’ ‘doRanking.Rd’
    ‘elementLookup.Rd’ ‘generator.R’ ‘makePowerRelationMonotonic.R’
Maintainer: ‘Tom Pike <tpike@lincoln.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Pike",
                    role = c("aut", "cre"),
                    email = "tpike@lincoln.ac.uk")
as necessary.
Maintainer: ‘Kieran Healy <kjhealy@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                          ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                        ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                                     ^
Maintainer: ‘Yang Li <yangli.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "yangli.stat@gmail.com"),
               person(given = c("Jun", "S."),
                      family = "Liu",
                      role = "aut"))
as necessary.
checkRd: (-1) s_soda_pred.Rd:8: Lost braces; missing escapes or markup?
     8 | S-SODA assumes within each slice the X vector follow multivariate normal distribution. This function predicts the response y by reverting the P(X | slice(y)) to P(slice(y) | X), and estimates the E(y|X) as sum_{h} E(y | slice(y)=h, X) P (slice(y)=h | X)
       |                                                                                                                                                                                                                   ^
checkRd: (-1) db_compact.Rd:41: Lost braces; missing escapes or markup?
    41 | database structure will be set to true. See GET /{db}. You can also obtain a list of
       |                                                  ^
Maintainer: ‘Luis Diaz-Garcia <diazgarcia@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luis",
                    family = "Diaz-Garcia",
                    role = c("aut", "cre"),
                    email = "diazgarcia@wisc.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jose D. Loera <jose.loera@inegi.org.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jose", "D."),
                    family = "Loera",
                    role = c("aut", "cre"),
                    email = "jose.loera@inegi.org.mx")
as necessary.
Maintainer: ‘G. Peters <peters.activities@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "G.",
                    family = "Peters",
                    role = c("aut", "cre"),
                    email = "peters.activities@gmail.com",
                    comment = "Ed.")
as necessary.
Maintainer: ‘Seungjun Ahn <seungjun.ahn@mountsinai.org>’

The Description field contains
  <arXiv:2303.13702v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dione Pereira Cardoso <cardoso.dione@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘KFactor.Rd’:
    \keyword{Nomograph; Particle-size; Organic matter; [TRUNCATED]
  File ‘RFactor_calc.Rd’:
    \keyword{Erosivity index; R-Factor; Universal Soil [TRUNCATED]
  File ‘RFactor_est.Rd’:
    \keyword{Erosivity index; R-Factor; Universal Soil [TRUNCATED]
  File ‘SoilConservation.Rd’:
    \keyword{Soil Conservation; Erosivity index; R-Fac [TRUNCATED]
  File ‘SoilLoss.Rd’:
    \keyword{Soil Loss; Water Erosion; R Factor; K Fac [TRUNCATED]
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  soilhypfit_control_fit_wrc_hcc.Rd: nloptr
  soilhypfit_fit_wrc_hcc.Rd: nloptr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Anderson Rodrigo da Silva <anderson.agro@hotmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) llwrPTF.Rd:7: Escaped LaTeX specials: \&
Maintainer: ‘Yi Yang <yi.yang6@mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenglong",
                      family = "Ye",
                      role = "aut",
                      email = "yexxx323@umn.edu"),
               person(given = "Yi",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "yi.yang6@mcgill.ca"),
               person(given = "Yuhong",
                      family = "Yang",
                      role = "aut",
                      email = "yyang@stat.umn.edu"))
as necessary.
Maintainer: ‘Carlos A. Sierra <csierra@bgc-jena.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "A."),
                      family = "Sierra",
                      role = c("aut", "cre"),
                      email = "csierra@bgc-jena.mpg.de"),
               person(given = "Markus",
                      family = "Mueller",
                      role = "aut"))
as necessary.
Maintainer: ‘Emanuele Cordano <emanuele.cordano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emanuele",
                      family = "Cordano",
                      role = c("aut", "cre"),
                      email = "emanuele.cordano@gmail.com"),
               person(given = "Daniele",
                      family = "Andreis",
                      role = "aut"),
               person(given = "Fabio",
                      family = "Zottele",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhaoliang He <1024299329@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhaoliang",
                      family = "He",
                      role = c("aut", "cre"),
                      email = "1024299329@qq.com"),
               person(given = "Linsui",
                      family = "Deng",
                      role = "aut",
                      email = "1175520015@qq.com"),
               person(given = "Kaiwen",
                      family = "Tan",
                      role = "aut",
                      email = "913596401@qq.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘meteoReaders.R’
Maintainer: ‘Jasper Van doninck <vandoninck.jasper@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jasper",
                    family = "Van doninck",
                    role = c("aut", "cre"),
                    email = "vandoninck.jasper@gmail.com")
as necessary.
Maintainer: ‘Bijan Seyednasrollah <bijan.s.nasr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bijan",
                    family = "Seyednasrollah",
                    role = c("aut", "cre"),
                    email = "bijan.s.nasr@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘DayOfYear.Rd’:
    \keyword{DOY,}
checkRd: (-1) solr_mlt.Rd:70: Lost braces; missing escapes or markup?
    70 | TermVector DEFAULT_FIELD_NAMES = new String[] {"contents"}
       |                                               ^
checkRd: (-1) solve_pH_from_AT.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:93: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  superClass.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘RColorBrewer’
Maintainer: ‘livio finos <livio@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "livio",
                    family = "finos",
                    role = c("aut", "cre"),
                    email = "livio@stat.unipd.it")
as necessary.
Maintainer: ‘Andreas Dominik <andreas.dominik@mni.thm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Dominik",
                    role = c("aut", "cre"),
                    email = "andreas.dominik@mni.thm.de")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  somsp.Rd: kohonen
  somspa.Rd: kohonen, som
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Charles Berry <ccberry@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles",
                    family = "Berry",
                    role = c("aut", "cre"),
                    email = "ccberry@ucsd.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘soundSpeed.Rd’
Maintainer: ‘Willem Daniel Schutte <wd.schutte@nwu.ac.za>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Willem", "Daniel"),
                    family = "Schutte",
                    role = c("aut", "cre"),
                    email = "wd.schutte@nwu.ac.za")
as necessary.
Maintainer: ‘"Zeb Burke-Conte" <zmbc@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zeb",
                      family = "Burke-Conte",
                      role = "aut"),
               person(given = "\"Zeb",
                      family = "Burke-Conte\"",
                      role = "cre",
                      email = "zmbc@uw.edu"))
as necessary.
Maintainer: ‘Weimin Zhang <zhangwm@hotmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘asrm.Rd’:
    https://doi.org/10.1111/biom.12997
  File ‘sorocs.Rd’:
    https://doi.org/10.1111/biom.12997
Maintainer: ‘Aurnov Chattopadhyay <aurnovcy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aurnov",
                    family = "Chattopadhyay",
                    role = c("aut", "cre"),
                    email = "aurnovcy@gmail.com")
as necessary.
checkRd: (-1) spe.Rd:101: Lost braces
   101 | code{spe} command; (4) \code{alpha} stores significance level as in
       |     ^
checkRd: (-1) load_sorvi_data.Rd:23: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Spencer Graves <spencer.graves@prodsyse.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Spencer",
                      family = "Graves",
                      role = c("cre", "aut", "cph"),
                      email = "spencer.graves@prodsyse.com"),
               person(given = "Sundar",
                      family = "Dorai-Raj",
                      role = "aut"),
               person(given = "Romain",
                      family = "Francois",
                      role = "ctb"))
as necessary.
Maintainer: ‘Bruno Silva <bmsasilva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruno",
                    family = "Silva",
                    role = c("aut", "cre"),
                    email = "bmsasilva@gmail.com")
as necessary.
Maintainer: ‘Luis J. Villanueva-Rivera <ljvillanueva@coquipr.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "J."),
                      family = "Villanueva-Rivera",
                      role = c("aut", "cre"),
                      email = "ljvillanueva@coquipr.com"),
               person(given = c("Bryan", "C."),
                      family = "Pijanowski",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Marcelino <dmarcelino@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Marcelino",
                    role = c("aut", "cre"),
                    email = "dmarcelino@live.com")
as necessary.

The BugReports field in DESCRIPTION has
  http://github.com/danielmarcelino/soundexBR
which should likely be
  http://github.com/danielmarcelino/soundexBR/issues
instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘soundexBR.Rd’:
    http://dx.doi.org/10.2139/ssrn.2320547
Maintainer: ‘Matthew Daniel Young <my4@sanger.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "Daniel"),
                    family = "Young",
                    role = c("aut", "cre"),
                    email = "my4@sanger.ac.uk")
as necessary.
Maintainer: ‘Kevin Ushey <kevinushey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kevin",
                    family = "Ushey",
                    role = c("aut", "cre"),
                    email = "kevinushey@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘SouthPark_Script_Data.Rd’ ‘app_server.R’
Maintainer: ‘Matheus Dalsente Krause <krause.d.matheus@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Silvia D'Angelo <silvia.dangelo@ucd.ie>’

The Description field contains
  MCMC algorithm. See D Angelo et al. (2018) <arXiv:1803.07166> and D
  Angelo et al. (2018) <arXiv:1807.03874>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alberto Krone-Martins <algol@sim.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alberto",
                    family = "Krone-Martins",
                    role = c("aut", "cre"),
                    email = "algol@sim.ul.pt")
as necessary.
Maintainer: ‘Vilmantas Gegzna <GegznaV@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: /commits/master
    From: README.md
Maintainer: ‘Anne Chao <chao@stat.nthu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anne",
                      family = "Chao",
                      role = c("aut", "cre"),
                      email = "chao@stat.nthu.edu.tw"),
               person(given = c("K.", "H."),
                      family = "Ma",
                      role = "aut"),
               person(given = c("T.", "C."),
                      family = "Hsieh",
                      role = "aut"),
               person(given = "Chun-Huo",
                      family = "Chiu",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SpaDES.core-package.Rd: copy, equalExtent, getColors,
    divergentColors, layerNames, numLayers, Plot, clearPlot,
    clickValues, clickExtent, clickCoordinates, dev, newPlot, rePlot
  depsLoadOrder.Rd: igraph
  downloadData.Rd: prepInputs
  emptyEventList.Rd: data.table
  moduleDiagram.Rd: igraph
  moduleGraph.Rd: igraph
  simList-accessors-events.Rd: data.table
  simList-class.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  corMatern.Rd: glmmPQL, lme
  spaMM_boot.Rd: boot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘spaMM/libs/spaMM.so’:
  Found non-API call to R: ‘PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Jose Manuel Vera Oteo <vera.josemanuel@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘geocode_cadastral.Rd’:
    \keyword{cadastre,}
    \keyword{geocoding,}
    \keyword{latitude,}
    \keyword{longitude,}
  File ‘to_number.Rd’:
    \keyword{currency,}
    \keyword{euros,}
    \keyword{money,}
  File ‘to_words.Rd’:
    \keyword{integers,}
    \keyword{money,}
    \keyword{spanish,}
Maintainer: ‘Daniela Witten <dwitten@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniela", "M."),
                      family = "Witten",
                      role = "aut"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"),
               person(given = "Daniela",
                      family = "Witten",
                      role = "cre",
                      email = "dwitten@u.washington.edu"))
as necessary.
Maintainer: ‘Aki Ariga <chezou@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aki",
                    family = "Ariga",
                    role = c("aut", "cre"),
                    email = "chezou@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/chezou/sparkavro
which should likely be
  https://github.com/chezou/sparkavro/issues
instead.
Maintainer: ‘Ramnath Vaidyanathan <ramnath.vaidya@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
checkRd: (-1) sdf_unnest.Rd:20: Lost braces
    20 | \code{a1, a2, a3}, then code{sdf_explode(df, a)} will produce output with each record replicated
       |                             ^
Maintainer: ‘Thomas Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Edgar Ruiz <edgar@rstudio.com>’

The BugReports field in DESCRIPTION has
  https://github.com/r-spark/sparkwarc
which should likely be
  https://github.com/r-spark/sparkwarc/issues
instead.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xgboost_classifier.Rd: ft_r_formula
  xgboost_regressor.Rd: ft_r_formula, ml_save
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sparrpowR-package.Rd: sparr, spatstat.random, spatstat.geom, terra,
    doFuture, doRNG
  spatial_data.Rd: spatstat.random
  spatial_power.Rd: spatstat.random
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Kean Ming Tan <keanming@u.washington.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Kean", "Ming"),
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "keanming@u.washington.edu")
as necessary.

File 'R/sparseBC-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Alex Gibberd <a.gibberd@lancaster.ac.uk>’

The Description field contains
  <arXiv:2303.11892>. Options to use classic multivariate Kalman filter
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

The Description field contains
  classifier from Ramey et al. (2017) <arXiv:1602.01182>. Other
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jelmer Ypma <uctpjyy@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jelmer",
                    family = "Ypma",
                    role = c("aut", "cre"),
                    email = "uctpjyy@ucl.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
checkRd: (-1) Coord.to.Pointers.Rd:54: Lost braces; missing escapes or markup?
    54 | \item{triangle=TRUE}{Input \code{rows} and {cols} represent lower
       |                                            ^
checkRd: (-1) Coord.to.Pointers.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{triangle=FALSE}{Input \code{rows} and {cols} represent a full
       |                                             ^
Maintainer: ‘Daniel P. Palomar <daniel.p.palomar@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andrew Zammit-Mangion <andrewzm@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Takahashi_Davis.Rd’:
    \keyword{factor,}
  File ‘cholsolve.Rd’:
    \keyword{factor,}
  File ‘cholsolveAQinvAT.Rd’:
    \keyword{factor,}
checkRd: (-1) cholsolveAQinvAT.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Solve the equation X = AQ^{-1}t(A) under permutations}
       |                                  ^
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Line",
                      family = "Clemmensen",
                      role = "aut",
                      email = "lhc@imm.dtu.dk"),
               person(given = c("contributions", "by", "Max"),
                      family = "Kuhn",
                      role = "aut"),
               person(given = "Max",
                      family = "Kuhn",
                      role = "cre",
                      email = "mxkuhn@gmail.com"))
as necessary.
Maintainer: ‘Riccardo Rastelli <riccardoras@gmail.com>’

The Description field contains
  <arXiv:1808.09262>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Adam B Kashlak <kashlak@ualberta.ca>’

The Description field contains
  search method outlined in Kashlak and Kong (2019) <arXiv:1705.02679>
  and in Kashlak (2019) <arXiv:1903.10988>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |    ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |             ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                      ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                   ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                            ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                                     ^
Maintainer: ‘Joseph Mihaljevic <Joseph.Mihaljevic@nau.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  model_parallel.Rd: future_lapply
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lax Chan <laxchan77@gmail.com>’

The Description field contains
  W., Vincent, K (2019) <arXiv:1902.05156>. This package explicitly
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘N. Benjamin Erichson <erichson@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("N.", "Benjamin"),
                      family = "Erichson",
                      role = c("aut", "cre"),
                      email = "erichson@uw.edu"),
               person(given = "Peng",
                      family = "Zheng",
                      role = "aut"),
               person(given = "Sasha",
                      family = "Aravkin",
                      role = "aut"))
as necessary.

The Description field contains
  Erichson et al. (2018) <arXiv:1804.00341>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marc Ratkovic <ratkovic@princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Ratkovic",
                      role = c("aut", "cre"),
                      email = "ratkovic@princeton.edu"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "aut"))
as necessary.
checkRd: (-1) plot.sparsereg.Rd:22-23: Lost braces
    22 | \env{main1, main2, main3}{
       |                          ^
checkRd: (-1) plot.sparsereg.Rd:25-27: Lost braces
    25 | \env{xlabel}{
       |             ^
checkRd: (-1) plot.sparsereg.Rd:29-31: Lost braces
    29 | \env{plot.one}{
       |               ^
checkRd: (-1) summary.sparsereg.Rd:27-29: Lost braces
    27 | \env{interval}{
       |               ^
checkRd: (-1) summary.sparsereg.Rd:31-33: Lost braces
    31 | \env{ci}{
       |         ^
checkRd: (-1) summary.sparsereg.Rd:35-37: Lost braces
    35 | \env{order}{
       |            ^
checkRd: (-1) summary.sparsereg.Rd:39-41: Lost braces
    39 | \env{normal}{
       |             ^
checkRd: (-1) summary.sparsereg.Rd:43-45: Lost braces
    43 | \env{select}{
       |             ^
checkRd: (-1) summary.sparsereg.Rd:47-48: Lost braces
    47 | \env{printit}{
       |              ^
checkRd: (-1) summary.sparsereg.Rd:50-52: Lost braces
    50 | \env{stage}{
       |            ^
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The Description field contains
  <arXiv:1701.06967>. In the model, a regularization term is added to the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

The BugReports field in DESCRIPTION has
  https://github.com/GjjvdBurg/SparseStep
which should likely be
  https://github.com/GjjvdBurg/SparseStep/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sparsesvd.Rd: dgCMatrix-class, sparseMatrix
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Marius Placzek <marius.placzek@med.uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "T.",
                      family = "Asendorf",
                      role = "aut"),
               person(given = "R.",
                      family = "Gera",
                      role = "aut"),
               person(given = "S.",
                      family = "Islam",
                      role = "aut"),
               person(given = "M.",
                      family = "Harden",
                      role = "aut"),
               person(given = "M.",
                      family = "Placzek",
                      role = "aut"),
               person(given = "Marius",
                      family = "Placzek",
                      role = "cre",
                      email = "marius.placzek@med.uni-goettingen.de"))
as necessary.
Maintainer: ‘Altieri Linda <linda.altieri@unibo.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "L.",
                      family = "Altieri",
                      role = "aut"),
               person(given = "D.",
                      family = "Cocchi",
                      role = "aut"),
               person(given = "G.",
                      family = "Roli",
                      role = "aut"),
               person(given = "Altieri",
                      family = "Linda",
                      role = "cre",
                      email = "linda.altieri@unibo.it"))
as necessary.
Maintainer: ‘Fabio Sigrist <fabiosigrist@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fabio",
                      family = "Sigrist",
                      role = c("aut", "cre"),
                      email = "fabiosigrist@gmail.com"),
               person(given = c("Hans", "R."),
                      family = "Kuensch",
                      role = "aut"),
               person(given = c("Werner", "A."),
                      family = "Stahel",
                      role = "aut"))
as necessary.
Maintainer: ‘Rounak Dey <deyrnk@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rounak",
                      family = "Dey",
                      role = c("aut", "cre"),
                      email = "deyrnk@umich.edu"),
               person(given = "Seunggeun",
                      family = "Lee",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sim_functional_process.R’
Maintainer: ‘Tuomas Rajala <tuomas.rajala@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tuomas",
                    family = "Rajala",
                    role = c("aut", "cre"),
                    email = "tuomas.rajala@iki.fi")
as necessary.
Maintainer: ‘David Clifford <david.clifford+CRAN@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Clifford",
                    role = c("aut", "cre"),
                    email = "david.clifford+CRAN@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dnnModel.R’ ‘interGradientsDL.R’ ‘loadData.R’ ‘spatialClustering.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  FEMdensity.Rd: basisfd
  smooth.FEM.basis.Rd: lambda2df, lambda2gcv, df2lambda
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Javier Garcia-Pintado <jgarciapintado@marum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "Garcia-Pintado",
                    role = c("aut", "cre"),
                    email = "jgarciapintado@marum.de")
as necessary.
checkRd: (-1) distSG.Rd:40: Lost braces; missing escapes or markup?
    40 |   matrix and weight matrix (plus a matrix with {eID} identifiers
       |                                                ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘kinetic_ising_ensemble.R’
Found the following significant warnings:
  /usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SpatialKWD.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  grf.Rd: ranger
  grf.bw.Rd: ranger
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Nobin Chandra Paul<ncp375@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nobin", "Chandra"),
                    family = "Paul",
                    role = c("aut", "cre"),
                    email = "ncp375@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rasterReilly.Rd: ratify
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Francesco Vidoli <fvidoli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francesco",
                      family = "Vidoli",
                      role = c("aut", "cre"),
                      email = "fvidoli@gmail.com"),
               person(given = "Roberto",
                      family = "Benedetti",
                      role = "aut"))
as necessary.
Maintainer: ‘Blas M. Benito <blasbenito@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Vural Yildirim <vurall_yildirim@hotmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘RoMLE.error.Rd’:
    https://doi.org/10.1080/00949655.2020.1740223
    https://doi.org/10.20290/estubtdb.518706
  File ‘SpatialRoMLE.Rd’:
    https://doi.org/10.1080/00949655.2020.1740223
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
Maintainer: ‘Yili Hong <yilihong@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yili",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "yilihong@vt.edu"),
               person(given = "Li",
                      family = "Xu",
                      role = "aut"),
               person(given = "Yimeng",
                      family = "Xie",
                      role = "aut"),
               person(given = "Zhongnan",
                      family = "Jin",
                      role = "aut"))
as necessary.

The Description field contains
  al. (2018, <arXiv:1809.06418>). The package also contains the Lyme
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++14: please drop specification unless essential
Maintainer: ‘Benjamin M. Taylor <benjamin.taylor.software@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "M."),
                      family = "Taylor",
                      role = c("aut", "cre"),
                      email = "benjamin.taylor.software@gmail.com"),
               person(given = c("Barry", "S.", "Rowlingson", "Additional", "contributions", "Ziyu"),
                      family = "Zheng",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SpatDensReg.Rd: Surv
  SuperSurvRegBayes.Rd: Surv
  anovaDDP.Rd: Surv
  cox.snell.survregbayes.Rd: Surv
  frailtyGAFT.Rd: Surv, rdist
  indeptCoxph.Rd: Surv
  spCopulaCoxph.Rd: Surv
  spCopulaDDP.Rd: Surv
  survregbayes.Rd: Surv, rdist, rdist.earth
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Samuel I. Berchuck <sib2@duke.edu>’

The Description field contains
  Spatial Surfaces", by Berchuck et al (2019), <arXiv:1911.04337>. The
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Francesco Pantalone <pantalone.fra@gmail.com>’

The Description field contains
  <arXiv:1710.09116>. The implementation has been done in C++ through the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Anh Tuan Bui <atbui@u.northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Anh", "Tuan"),
                      family = "Bui",
                      role = c("aut", "cre"),
                      email = "atbui@u.northwestern.edu"),
               person(given = c("Daniel", "W."),
                      family = "Apley",
                      role = "ths"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  surfacemodel.Rd: rpart.control, rpart
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Axel",
                      family = "Gandy",
                      role = c("aut", "cre"),
                      email = "a.gandy@imperial.ac.uk"),
               person(given = c("Jan", "Terje"),
                      family = "Kvaloy.",
                      role = "aut",
                      email = "jan.t.kvaloy@uis.no"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ning Hao <nhao@math.arizona.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yue", "S."),
                      family = "Niu",
                      role = "aut"),
               person(given = "Ning",
                      family = "Hao",
                      role = c("aut", "cre"),
                      email = "nhao@math.arizona.edu"),
               person(given = "Bin",
                      family = "Dong",
                      role = "aut"))
as necessary.
Maintainer: ‘Milana Gataric <m.gataric@statslab.cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Milana",
                      family = "Gataric",
                      role = c("aut", "cre"),
                      email = "m.gataric@statslab.cam.ac.uk"),
               person(given = "Tengyao",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut"))
as necessary.

The Description field contains
  T. and Samworth, R. J. (2018) <arXiv:1712.05630>. The algorithm is
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David A. Schoenfeld <dschoenfeld@mgh.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "A."),
                    family = "Schoenfeld",
                    role = c("aut", "cre"),
                    email = "dschoenfeld@mgh.harvard.edu")
as necessary.
Maintainer: ‘Ziang Zhang <aguero.zhang@mail.utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "aguero.zhang@mail.utoronto.ca"),
               person(given = "Lei",
                      family = "Sun",
                      role = "aut"))
as necessary.

The Description field contains
  Accounting for Covariate Effects" <arXiv:2203.15641>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) NEWS.Rd:137: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CompactStratification-class.Rd: SpatialPixels-class,
    SpatialPoints-class, SpatialPixelsDataFrame-class
  CompactStratificationEqualArea-class.Rd: SpatialPixels-class,
    SpatialPoints-class
  CompactStratificationPriorPoints-class.Rd: SpatialPoints-class,
    SpatialPixels-class
  SamplingPattern-class.Rd: SpatialPoints-class
  SamplingPatternCentroids-class.Rd: SpatialPoints-class
  SamplingPatternPriorPoints-class.Rd: SpatialPoints-class
  SamplingPatternPurposive-class.Rd: SpatialPoints-class
  SamplingPatternRandom-class.Rd: SpatialPoints-class
  SamplingPatternRandomComposite-class.Rd: SpatialPoints-class,
    SpatialPointsDataFrame-class
  SamplingPatternRandomSamplingUnits-class.Rd: SpatialPoints-class
  stratify-methods.Rd: SpatialPixels-class, SpatialGrid-class,
    SpatialPolygons-class, SpatialPoints-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jacob Bien <jbien@usc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Bien",
                      role = c("aut", "cre"),
                      email = "jbien@usc.edu"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Samuel I. Berchuck <sib2@duke.edu>’

The Description field contains
  visual field data", <arXiv:1811.11038>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Shuichi Kawano <skawano@math.kyushu-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shuichi",
                    family = "Kawano",
                    role = c("aut", "cre"),
                    email = "skawano@math.kyushu-u.ac.jp")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘federov.R’
Maintainer: ‘Rasheed AM <a.rasheed@qut.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rasheed",
                      family = "AM",
                      role = c("aut", "cre"),
                      email = "a.rasheed@qut.edu.au"),
               person(given = "Egodawatta",
                      family = "P",
                      role = "aut"),
               person(given = "Goonetilleke",
                      family = "A",
                      role = "aut"),
               person(given = "McGree",
                      family = "J",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexios Ghalanos <alexios@4dscape.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexios",
                    family = "Ghalanos",
                    role = c("aut", "cre"),
                    email = "alexios@4dscape.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forecast.spdur.Rd: forecast
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Javier",
                      family = "Martinez-Lopez",
                      role = c("aut", "cre"),
                      email = "javi.martinez.lopez@gmail.com"),
               person(given = "Babak",
                      family = "Naimi",
                      role = "aut",
                      email = "naimi.b@gmail.com"),
               person(given = "Julia",
                      family = "Martinez-Fernandez",
                      role = "aut",
                      email = "juliamf@um.es"))
as necessary.
Maintainer: ‘Charlie Beirnaert <charlie_beirnaert@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charlie",
                      family = "Beirnaert",
                      role = c("aut", "cre"),
                      email = "charlie_beirnaert@icloud.com"),
               person(given = c("Trung", "Nghia"),
                      family = "Vu",
                      role = "aut"),
               person(given = "Pieter",
                      family = "Meysman",
                      role = "aut"),
               person(given = "Kris",
                      family = "Laukens",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Valkenborg",
                      role = "aut"))
as necessary.
checkRd: (-1) findRef.Rd:39: Lost braces
    39 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
checkRd: (-1) hClustAlign.Rd:70: Lost braces
    70 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
Maintainer: ‘Denis Rastegaev <drastega@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Denis",
                    family = "Rastegaev",
                    role = c("aut", "cre"),
                    email = "drastega@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Roadmap of specklestar package
Maintainer: ‘Azka Javaid <azka.javaid.gr@dartmouth.edu>’

The Description field contains
  (2009) <arXiv:0909.4061>. Clustering method is outlined in: Song et
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  speck.Rd: Ckmeans.1d.dp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
checkRd: (-1) FitAkdParameters.Rd:23: Lost braces; missing escapes or markup?
    23 |       p(y|ens) = 1 / K * sum {dnorm(y, z.i, s)} \cr
       |                              ^
checkRd: (-1) australia.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) australia.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) australia.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) australia.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) australia.Rd:19: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  continuum_removal.Rd: baseline
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Chris Paciorek <paciorek@alumni.cmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Paciorek",
                    role = c("aut", "cre"),
                    email = "paciorek@alumni.cmu.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) image.plot.Rd:78: Escaped LaTeX specials: \$
Maintainer: ‘Martin Seilmayer <martin.seilmayer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Seilmayer",
                    role = c("aut", "cre"),
                    email = "martin.seilmayer@gmail.com")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Johannes Zauner [aut, cre, cph] (<https://orcid.org/0000-0003-2171-4566>), LiTG [fnd, cph] (www.litg.de)’
  Authors@R: ‘Johannes Zauner [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-2171-4566>), LiTG [fnd, cph] (URL: www.litg.de)’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘analysis_age.R’ ‘analysis_alpha.R’ ‘analysis_helpers.R’
    ‘analysis_helpers_table.R’ ‘analysis_photo.R’ ‘analysis_radio.R’
    ‘analysis_setup.R’ ‘export_Output_Settings.R’ ‘export_download.R’
    ‘export_helpers.R’ ‘export_helpers_plot.R’ ‘export_helpers_table.R’
    ‘import_examples.R’ ‘import_examples_box.R’
Specified C++11: please drop specification unless essential
Maintainer: ‘Christopher R John <chris.r.john86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christopher", "R"),
                      family = "John",
                      role = c("aut", "cre"),
                      email = "chris.r.john86@gmail.com"),
               person(given = "David",
                      family = "Watson",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘innprod.R’ ‘utils.R’
Maintainer: ‘Castor Guisande Gonzalez <castor@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Castor", "Guisande"),
                    family = "Gonzalez",
                    role = c("aut", "cre"),
                    email = "castor@uvigo.es")
as necessary.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = c("Elizabeth", "A."),
                      family = "Thompson",
                      role = "aut",
                      email = "eathomp@u.washington.edu"))
as necessary.
checkRd: (-1) speech_recompiler.Rd:25: Lost braces; missing escapes or markup?
    25 | The default compilation is that of \ code {speech_build (., compiler = TRUE}).
       |                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘import_qiime2_tax_table.R’ ‘import_sintax_tax_table.R’
Maintainer: ‘Michal Juraska <mjuraska@fredhutch.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michal",
                      family = "Juraska",
                      role = c("aut", "cre"),
                      email = "mjuraska@fredhutch.org"),
               person(given = c("with", "contributions", "from", "Peter", "B."),
                      family = "Gilbert",
                      role = "aut",
                      email = "pgilbert@scharp.org"),
               person(given = "Xiaomin",
                      family = "Lu",
                      role = "aut",
                      email = "xlu2@phhp.ufl.edu"),
               person(given = "Min",
                      family = "Zhang",
                      role = "aut",
                      email = "mzhangst@umich.edu"),
               person(given = "Marie",
                      family = "Davidian",
                      role = "aut",
                      email = "davidian@stat.ncsu.edu"),
               person(given = c("Anastasios", "A."),
                      family = "Tsiatis",
                      role = "aut",
                      email = "tsiatis@stat.ncsu.edu"))
as necessary.
Maintainer: ‘Selva Prabhakaran <selva86@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Selva",
                    family = "Prabhakaran",
                    role = c("aut", "cre"),
                    email = "selva86@gmail.com")
as necessary.
Found the following files/directories:
  ‘.neig’
Maintainer: ‘Maximilian Lange <maximilian-lange@t-online.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Lange",
                      role = c("aut", "cre"),
                      email = "maximilian-lange@t-online.de"),
               person(given = "Sven",
                      family = "Lautenbach",
                      role = "aut"),
               person(given = "Claudia",
                      family = "Raedig",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Brenning <alexander.brenning@uni-jena.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yang Liu <yliu87@umd.edu>’

The Description field contains
  <arXiv:2303.10079>. Both the conditional densities of observed
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xingche Guo <xguo@iastate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xingche",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "xguo@iastate.edu")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) cylinder.counts.Rd:61-62: Lost braces
    61 | nucleotide, so that \code{a.c} represents the set {\code{aac}, \code{acc}, 
       |                                                   ^
Maintainer: ‘Yijun Xie <yijun.xie@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijun",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "yijun.xie@uwaterloo.ca")
as necessary.
Maintainer: ‘Jongmin Lee <jongminlee9218@gmail.com>’

The Description field contains
  H.-S. (2020) <arXiv:2003.02578>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.
Maintainer: ‘John P. Nolan <jpnolan@american.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "P."),
                      family = "Nolan",
                      role = c("aut", "cre"),
                      email = "jpnolan@american.edu"),
               person(given = "American",
                      family = "University",
                      role = "aut"))
as necessary.
checkRd: (-1) adaptIntegrateSpherePolar.Rd:14: Lost braces
    14 | code{adaptIntegrateBallPolar()} will likely miss these abrupt changes and give
       |     ^
Maintainer: ‘Eduardo García-Portugués <edgarcia@est-econ.uc3m.es>’

The BugReports field in DESCRIPTION has
  https://github.com/egarpor/sphunif
which should likely be
  https://github.com/egarpor/sphunif/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  F_from_f.Rd: tang-norm-decomp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Bob Rudis <bob@rud.is>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bob",
                      family = "Rudis",
                      role = c("aut", "cre"),
                      email = "bob@rud.is",
                      comment = "bob@rud.is"),
               person(family = "SEOmoz"),
               person(family = "Inc",
                      role = "aut"))
as necessary.
Maintainer: ‘Iván Ayala-Bizarro <ivan.ayala@unh.edu.pe>’

The Description field contains
  http://drought.unl.edu/monitoringtools/downloadablespiprogram.aspx.
Please enclose URLs in angle brackets (<...>).
Found the following files/directories:
  ‘AlphaGA_3.txt’ ‘AlphaML_3.txt’ ‘BetaGA_3.txt’ ‘BetaML_3.txt’
  ‘Performance_GA_ML_ 3 .pdf’ ‘SPIGA_3Pmon.Pm_St1.pdf’
  ‘SPIGA_3Pmon.Pm_St2.pdf’ ‘SPI_AG_3.txt’ ‘SPI_ML_3.txt’
  ‘SPI_ML_3Pm_St1.pdf’ ‘SPI_ML_3Pm_St2.pdf’ ‘SPI_ML_3Pm_St3.pdf’
  ‘SPI_ML_3Pm_St4.pdf’ ‘SPI_PARAM_3.txt’ ‘SPI_PARAM_3Pm_St1.pdf’
  ‘SPI_PARAM_3Pm_St2.pdf’ ‘SPI_PARAM_3Pm_St3.pdf’
  ‘SPI_PARAM_3Pm_St4.pdf’
Maintainer: ‘Udaya B. Kogalur <ubk@kogalur.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hemant",
                      family = "Ishwaran",
                      role = "aut",
                      email = "hemant.ishwaran@gmail.com"),
               person(given = c("Udaya", "B."),
                      family = "Kogalur",
                      role = "cre",
                      email = "ubk@kogalur.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arturas Rozenas <ar199@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arturas",
                    family = "Rozenas",
                    role = c("aut", "cre"),
                    email = "ar199@nyu.edu")
as necessary.
Maintainer: ‘Jilber Urbina <JilberUrbina@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jilber",
                    family = "Urbina",
                    role = c("aut", "cre"),
                    email = "jilberurbina@gmail.com")
as necessary.
Maintainer: ‘Johannes W. Dietrich <johannes.dietrich@ruhr-uni-bochum.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Sam Levin <levisc8@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gudrun",
                      family = "Carl",
                      role = c("cre", "aut")),
               person(given = "Ingolf",
                      family = "Kuehn",
                      role = "aut"),
               person(given = "Sam",
                      family = "Levin",
                      role = c("aut", "cre"),
                      email = "levisc8@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Julien Chiquet <julien.chiquet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Charles",
                      family = "Bouveyron",
                      role = "aut"),
               person(given = "Julien",
                      family = "Chiquet",
                      role = c("aut", "cre"),
                      email = "julien.chiquet@gmail.com"),
               person(given = "Pierre",
                      family = "Latouche",
                      role = "aut"),
               person(given = "Pierre-Alexandre",
                      family = "Mattei",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘spinyReg.Rd’:
    \keyword{models,}
Maintainer: ‘Roberto Villegas-Diaz <r.villegas-diaz@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Melantha Wang <wang.melantha@gmail.com>’

The Description field contains
  Cost Experience Simulator" <arXiv:2109.04058>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
Maintainer: ‘Sam Parsons <sam.parsons@radboudumc.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The BugReports field in DESCRIPTION has
  https://github.com/sdparsons/splithalf
which should likely be
  https://github.com/sdparsons/splithalf/issues
instead.
checkRd: (-1) speedtestdata.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:23: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
Maintainer: ‘Anthony Christidis <anthony.christidis@stat.ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anthony",
                      family = "Christidis",
                      role = c("aut", "cre"),
                      email = "anthony.christidis@stat.ubc.ca"),
               person(given = "Stefan",
                      family = "Van Aelst",
                      role = "aut",
                      email = "stefan.vanaelst@kuleuven.be"),
               person(given = "Ruben",
                      family = "Zamar",
                      role = "aut",
                      email = "ruben@stat.ubc.ca"))
as necessary.

The Description field contains
  Christidis, Van Aelst and Zamar (2019) <arXiv:1812.05678>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ananda Mahto <mrdwab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ananda",
                    family = "Mahto",
                    role = c("aut", "cre"),
                    email = "mrdwab@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Feature Changes
Maintainer: ‘Valentin Todorov <valentin.todorov@chello.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dongjun",
                      family = "Chung",
                      role = "aut",
                      email = "chungdon@stat.wisc.edu"),
               person(given = "Hyonho",
                      family = "Chun",
                      role = "aut",
                      email = "chun@stat.wisc.edu"),
               person(given = "Sunduz",
                      family = "Keles",
                      role = "aut",
                      email = "keles@stat.wisc.edu"),
               person(given = "Valentin",
                      family = "Todorov",
                      role = "cre",
                      email = "valentin.todorov@chello.at"))
as necessary.
File ‘splusTimeDate/libs/splusTimeDate.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Moliere Nguile-Makao <moliere.nguile@gmail.com>’

File 'R/SPmlficmcm-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘addlearn_local.R’
checkRd: (-1) gbmidwcv.Rd:118: Lost braces
   118 | rfcv{randomForest} and gbm
       |     ^
checkRd: (-1) gbmokgbmidwcv.Rd:108: Lost braces
   108 | variable and anisotropy parameters. see notes vgm{gstat} for details.
       |                                                  ^
Maintainer: ‘Romin Ebrahimi <romin.ebrahimi@utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Romin",
                    family = "Ebrahimi",
                    role = c("aut", "cre"),
                    email = "romin.ebrahimi@utexas.edu")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) spnn-package.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:18: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as.idigbio.Rd: idig_search_records
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Vincent Guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vincent",
                    family = "Guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Maintainer: ‘Feiyu Yue <yuefyopals@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zihao",
                      family = "Zheng",
                      role = "aut"),
               person(given = "Feiyu",
                      family = "Yue",
                      role = c("aut", "cre"),
                      email = "yuefyopals@gmail.com"))
as necessary.
Maintainer: ‘Lennard van Wanrooij <lennardvanwanrooij@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lennard",
                    family = "van Wanrooij",
                    role = c("aut", "cre"),
                    email = "lennardvanwanrooij@gmail.com")
as necessary.
Maintainer: ‘Ming Wang <willnju@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ming",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "willnju@gmail.com"),
               person(given = "Yongtao",
                      family = "Guan",
                      role = "aut"),
               person(given = "Kun",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Nobin Chandra Paul<nobin.niasm@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Nobin", "Chandra"),
                      family = "Paul",
                      role = c("aut", "cre"),
                      email = "nobin.niasm@outlook.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = "Ankur",
                      family = "Biswas",
                      role = "aut"),
               person(given = "Tauqueer",
                      family = "Ahmad",
                      role = "aut"),
               person(given = c("Prachi", "Misra"),
                      family = "Sahoo",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    updates of 10th May 2021
Maintainer: ‘DongHyuk Lee <leedhyuk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "DongHyuk",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "leedhyuk@gmail.com"),
               person(given = "Samiran",
                      family = "Sinha",
                      role = "aut"))
as necessary.
Maintainer: ‘Fei Zhou <fei.zhou@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fei",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "fei.zhou@outlook.com"),
               person(given = "Yuwen",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xi",
                      family = "Lu",
                      role = "aut"),
               person(given = "Jie",
                      family = "Ren",
                      role = "aut"),
               person(given = "Cen",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Adrienne M. Wootten <amwootte@ou.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adrienne", "M."),
                    family = "Wootten",
                    role = c("aut", "cre"),
                    email = "amwootte@ou.edu",
                    comment = "University of Oklahoma")
as necessary.
Maintainer: ‘Guo Yu <gy63@uw.edu>’

The Description field contains
  <arXiv:1907.08414>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  onNextInput.Rd: observeEvent
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lauren Grant <pacele@vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lauren",
                      family = "Grant",
                      role = c("aut", "cre"),
                      email = "pacele@vcu.edu"),
               person(given = "David",
                      family = "Wheeler",
                      role = "aut"))
as necessary.
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.
checkRd: (-1) impactspsur.Rd:42: Lost braces; missing escapes or markup?
    42 | and a matching \code{Qres} list attribute if {Q} was given.
       |                                              ^
checkRd: (-1) spsur3sls.Rd:158: Lost braces; missing escapes or markup?
   158 |   the matrix of regressors, of order \emph{(Nxp_{g})}. Moreover, 
       |                                                 ^
checkRd: (-1) spsurgs3sls.Rd:67: Lost braces; missing escapes or markup?
    67 | \item{het}{default {FALSE}: if {TRUE} uses the methods 
       |                    ^
checkRd: (-1) spsurgs3sls.Rd:67: Lost braces; missing escapes or markup?
    67 | \item{het}{default {FALSE}: if {TRUE} uses the methods 
       |                                ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  impactspsur.Rd: impacts
  spsur-package.Rd: impacts
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Renato Panaro <renatovp@ime.usp.br>’

The Description field contains
  right-censored data. RV Panaro (2020) <arXiv:2003.10548>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘Renato Panaro [aut, cre] (<https://orcid.org/0000-0002-1903-2091>, https://rvpanaro.github.io/), Fábio Demarqui [aut] (<https://orcid.org/0000-0001-9236-1986>), Vinícius Mayrink [aut] (<https://orcid.org/0000-0002-5683-8326>)’
  Authors@R: ‘Renato Panaro [aut, cre] (ORCID: <https://orcid.org/0000-0002-1903-2091>, URL: https://rvpanaro.github.io/), Fábio Demarqui [aut] (ORCID: <https://orcid.org/0000-0001-9236-1986>), Vinícius Mayrink [aut] (ORCID: <https://orcid.org/0000-0002-5683-8326>)’
checkRd: (-1) spsOption.Rd:29: Lost braces; missing escapes or markup?
    29 | Some functions in {spsUtil}, {spsComps} and {systempPipeShiny} will behave
       |                   ^
checkRd: (-1) spsOption.Rd:29: Lost braces; missing escapes or markup?
    29 | Some functions in {spsUtil}, {spsComps} and {systempPipeShiny} will behave
       |                              ^
checkRd: (-1) spsOption.Rd:29: Lost braces; missing escapes or markup?
    29 | Some functions in {spsUtil}, {spsComps} and {systempPipeShiny} will behave
       |                                             ^
Maintainer: ‘Matthew E. Aiello-Lammens <matt.lammens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
'library' or 'require' calls not declared from:
  ‘MBA’ ‘akima’ ‘colorspace’ ‘fields’ ‘maps’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.Rd: viridis
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘G. Grothendieck <ggrothendieck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "G.",
                    family = "Grothendieck",
                    role = c("aut", "cre"),
                    email = "ggrothendieck@gmail.com")
as necessary.
checkRd: (-1) sqldf.Rd:248: Lost braces
   248 | and code{port} arguments of sqldf.
       |         ^
Maintainer: ‘Wilson Freitas <wilson.freitas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wilson",
                    family = "Freitas",
                    role = c("aut", "cre"),
                    email = "wilson.freitas@gmail.com")
as necessary.
Maintainer: ‘Martin Aryee <martin.aryee@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhijin",
                      family = "Wu",
                      role = "aut",
                      comment = "Jean"),
               person(given = "Martin",
                      family = "Aryee",
                      role = c("aut", "cre"),
                      email = "martin.aryee@gmail.com"))
as necessary.
Maintainer: ‘Mike Lee <random.deviate@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mike",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "random.deviate@gmail.com")
as necessary.
Maintainer: ‘Ravi Varadhan <ravi.varadhan@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ravi",
                    family = "Varadhan",
                    role = c("aut", "cre"),
                    email = "ravi.varadhan@jhu.edu")
as necessary.
checkRd: (-1) fpiter.Rd:55-58: Lost braces
    55 |     \code{tol}{ - a small, positive scalar that determines when iterations 
       |               ^
checkRd: (-1) fpiter.Rd:60-61: Lost braces
    60 |     \code{maxiter}{ - an integer denoting the maximum limit on the number of 
       |                   ^
checkRd: (-1) fpiter.Rd:63-65: Lost braces
    63 |     \code{trace}{ - a logical variable denoting whether some of the intermediate 
       |                 ^
checkRd: (-1) fpiter.Rd:67-70: Lost braces
    67 |     \code{intermed}}{ - a logical variable denoting whether the intermediate 
       |                     ^
checkRd: (-1) squarem.Rd:134: Lost braces
   134 |       along with the corresponding log-likelihood value.  When the code{objfn} is not specified it will return the fixed-point residual instead of the objective function values. 
       |                                                                        ^
'library' or 'require' call not declared from: ‘interval’
Maintainer: ‘Aron C. Eklund <aroneklund@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aron", "C."),
                    family = "Eklund",
                    role = c("aut", "cre"),
                    email = "aroneklund@gmail.com")
as necessary.
Maintainer: ‘Mirrelijn M. van Nee <m.vannee@amsterdamumc.nl>’

The Description field contains
  Nee et al. (2021) <arXiv:2101.03875>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) squidR.Rd:83: Lost braces; missing escapes or markup?
    83 |   \item \code{X1_sto_shared} (default \code{TRUE}): {logical}; if \code{TRUE}, the stochastic environmental effect included in the environmental effect x1 will be shared between individuals. If \code{FALSE}, each individual will experience a different stochastic environmental effect x1 (i.e. a new stochastic environmental effect is generated for each individual).
       |                                                     ^
Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arnaud",
                    family = "Le Rouzic",
                    role = c("aut", "cre"),
                    email = "arnaud.le-rouzic@universite-paris-saclay.fr")
as necessary.
Maintainer: ‘Pablo J. Villacorta <pjvi@decsai.ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pablo", "J."),
                    family = "Villacorta",
                    role = c("aut", "cre"),
                    email = "pjvi@decsai.ugr.es")
as necessary.
checkRd: (-1) plot.SRCS.Rd:48-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:56-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:59-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:61-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:63-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:74-75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:77-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:87-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:143-144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:145: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:146-148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:149: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Attila Csala <a@csala.me>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sRDA.Rd’:
    https://doi.org/10.1093/bioinformatics/btx374
Maintainer: ‘Harriet Jane Goers <hgoers@umd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Harriet", "Jane"),
                    family = "Goers",
                    role = c("aut", "cre"),
                    email = "hgoers@umd.edu")
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Steffen",
                      family = "Nestler",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lukas Beule <lukas.beule@julius-kuehn.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Kelli F. Johnson <kelli.johnson@noaa.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) ssaBSS-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:26: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yang Liu <zjubioly@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yang",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "zjubioly@gmail.com"),
               person(given = "Francesca",
                      family = "Chiaromonte",
                      role = "aut"),
               person(given = "Bing",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas Fabbro <thomas.fabbro@unibas.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Fabbro",
                    role = c("aut", "cre"),
                    email = "thomas.fabbro@unibas.ch")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.Rd: levelplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Elisa Fusco <fusco_elisa@libero.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elisa",
                      family = "Fusco",
                      role = c("aut", "cre"),
                      email = "fusco_elisa@libero.it"),
               person(given = "Francesco",
                      family = "Vidoli",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_moran.Rd: nb2listw
  ssfa.Rd: nb2listw, maxNR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Christiana Kartsonaki <christiana.kartsonaki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christiana",
                    family = "Kartsonaki",
                    role = c("aut", "cre"),
                    email = "christiana.kartsonaki@gmail.com")
as necessary.
Maintainer: ‘Reza Mohammadi <a.mohammadi@uva.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Maintainer: ‘Sebastien Thonnard <sebastien.thonnard@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastien",
                    family = "Thonnard",
                    role = c("aut", "cre"),
                    email = "sebastien.thonnard@icloud.com")
as necessary.
Maintainer: ‘Megan Orr <megan.orr@ndsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Megan",
                      family = "Orr",
                      role = c("aut", "cre"),
                      email = "megan.orr@ndsu.edu"),
               person(given = "Peng",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Luis Benites Sanchez <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Benites"),
                      family = "Sanchez",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"),
               person(given = c("Clecio", "da", "Silva"),
                      family = "Ferreira",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter Curtis <peterrobertcurtis@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) new.distance.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:30-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:38-40: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Mikhail Zhelonkin <Mikhail.Zhelonkin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mikhail",
                      family = "Zhelonkin",
                      role = c("aut", "cre"),
                      email = "mikhail.zhelonkin@gmail.com"),
               person(given = c("Marc", "G."),
                      family = "Genton",
                      role = "aut"),
               person(given = "Elvezio",
                      family = "Ronchetti",
                      role = "aut"))
as necessary.
Maintainer: ‘Luis Benites <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rocio",
                      family = "Maehara",
                      role = "aut"),
               person(given = "Luis",
                      family = "Benites",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"))
as necessary.
Maintainer: ‘Edgar Santos-Fernandez <santosfe@qut.edu.au>’

The Description field contains
  <arXiv:2103.03538>. In these models, spatial dependence is captured
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andrew Thomas Jones <andrewthomasjones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrew", "Thomas"),
                      family = "Jones",
                      role = c("aut", "cre"),
                      email = "andrewthomasjones@gmail.com"),
               person(given = c("Hien", "Duy"),
                      family = "Nguyen",
                      role = "aut"),
               person(given = c("Geoffrey", "J."),
                      family = "McLachlan",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Dave Zes <zesdave@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dave",
                    family = "Zes",
                    role = c("aut", "cre"),
                    email = "zesdave@gmail.com")
as necessary.
Maintainer: ‘Kevin Matlock <kevin.matlock@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Matlock",
                      role = c("aut", "cre"),
                      email = "kevin.matlock@gmail.com"),
               person(given = "Raziur",
                      family = "Rahman",
                      role = "aut"))
as necessary.
Maintainer: ‘Luis Hernando Vanegas <hvanegasp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Hernando"),
                      family = "Vanegas",
                      role = c("aut", "cre"),
                      email = "hvanegasp@gmail.com"),
               person(given = c("Gilberto", "A."),
                      family = "Paula",
                      role = "aut"))
as necessary.
Maintainer: ‘Niklas Pfister <np@math.ku.dk>’

The Description field contains
  <arXiv:1911.01850>. The procedure uses averaging to estimate a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) SRanalysis.Rd:100: Lost braces
   100 |   P. B{\"u}hlmann (2019). Stabilizing Variable Selection and
       |       ^
checkRd: (-1) StabilizedRegression.Rd:109: Lost braces
   109 |   P. B{\"u}hlmann (2019). Stabilizing Variable Selection and
       |       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  LearnerList.Rd: ctree
  accuracy.Rd: classAgreement
  stabletree-coercion.Rd: randomForest, RandomForest-class, cforest,
    ranger
  stabletree.Rd: as.party
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Benjamin Hofner <benjamin.hofner@pei.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) stabsel_parameters.Rd:42: Lost braces
    42 |     always use code{"none"}.}
       |                    ^
checkRd: (-1) stabsel_stabsel.Rd:25: Lost braces
    25 |     always use code{"none"}.}
       |                    ^
Maintainer: ‘Mike Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  stacking” <arXiv:2101.07954>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) stackExample.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stackExample.Rd:11: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gherardo Varando <gherardo.varando@gmail.com>’

The Description field contains
  Smith J. Q. (2018) <arXiv:1705.09457>.  Thwaites P. A., Smith, J. Q.
  (2017) <arXiv:1510.00186>.  Barclay L. M., Hutton J. L. and Smith J. Q.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Nutter <david.nutter@bioss.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Helen",
                      family = "Kettle",
                      role = "aut"),
               person(given = "David",
                      family = "Nutter",
                      role = "cre",
                      email = "david.nutter@bioss.ac.uk"))
as necessary.
Maintainer: ‘LW Pembleton <lwpembleton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "LW",
                    family = "Pembleton",
                    role = c("aut", "cre"),
                    email = "lwpembleton@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) stamppFst.Rd:20: Lost braces
    20 | \code{Fsts}{a matrix of pairwise Fst values between populations}
       |            ^
checkRd: (-1) stamppFst.Rd:21: Lost braces
    21 | \code{Pvalues}{a matrix of p-values for each of the pairwise Fst values containined in the 'Fsts' matrix}
       |               ^
checkRd: (-1) stamppFst.Rd:22: Lost braces
    22 | \code{Bootstraps}{a dataframe of each Fst value generated during Bootstrapping and the associated confidence intervals}
       |                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘stamp.direction.r’
Maintainer: ‘Christopher D. Eager <eager.stats@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) standardize.Rd:94: Lost braces; missing escapes or markup?
    94 | take on values {-0.5, 0, 0.5} rather than {-1, 0, 1}, the standard deviation
       |                ^
checkRd: (-1) standardize.Rd:94: Lost braces; missing escapes or markup?
    94 | take on values {-0.5, 0, 0.5} rather than {-1, 0, 1}, the standard deviation
       |                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Maintainer: ‘E. P. Adams <eric.adams@orau.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("E.", "L."),
                      family = "Frome",
                      role = "aut",
                      email = "fromeEL@ornl.gov"),
               person(given = c("D.", "P."),
                      family = "Frome",
                      role = "aut"),
               person(given = c("E.", "P."),
                      family = "Adams",
                      role = "cre",
                      email = "eric.adams@orau.org"))
as necessary.
checkRd: (-1) get_fields.Rd:27: Lost braces
    27 | codes, the function will return a warning by default, suggesting setting \code{convert_field_names} to code{TRUE}.
       |                                                                                                            ^
checkRd: (-1) identify_form_fields.Rd:34: Lost braces
    34 | codes, the function will return a warning by default, suggesting setting \code{convert_field_names} to code{TRUE}.
       |                                                                                                            ^
checkRd: (-1) abs_parms.Rd:67: Lost braces; missing escapes or markup?
    67 |    \item $S_{275-295}$ slope between 275 and 295 nm calculated with nonlinear regression
       |             ^
checkRd: (-1) abs_parms.Rd:68: Lost braces; missing escapes or markup?
    68 |    \item $S_{350-400}$ slope between 350 and 400 nm calculated with nonlinear regression
       |             ^
checkRd: (-1) abs_parms.Rd:69: Lost braces; missing escapes or markup?
    69 |    \item $S_{300-700}$ slope between 275 and 295 nm calculated with nonlinear regression
       |             ^
checkRd: (-1) abs_parms.Rd:70: Lost braces; missing escapes or markup?
    70 |    \item SR slope ratio, calculated by $S_{275-295}$/$S_{350-400}$
       |                                           ^
checkRd: (-1) abs_parms.Rd:70: Lost braces; missing escapes or markup?
    70 |    \item SR slope ratio, calculated by $S_{275-295}$/$S_{350-400}$
       |                                                         ^
checkRd: (-1) abs_parms.Rd:71: Lost braces; missing escapes or markup?
    71 |    \item E2:E3 ratio $a_{250}$/$a_{365}$
       |                         ^
checkRd: (-1) abs_parms.Rd:71: Lost braces; missing escapes or markup?
    71 |    \item E2:E3 ratio $a_{250}$/$a_{365}$
       |                                   ^
checkRd: (-1) abs_parms.Rd:72: Lost braces; missing escapes or markup?
    72 |    \item E4:E6 ratio $a_{465}$/$a_{665}$
       |                         ^
checkRd: (-1) abs_parms.Rd:72: Lost braces; missing escapes or markup?
    72 |    \item E4:E6 ratio $a_{465}$/$a_{665}$
       |                                   ^
checkRd: (-1) abs_parms.Rd:73: Lost braces; missing escapes or markup?
    73 |    \item $a_{254}$ absorbance at 254 nm
       |             ^
checkRd: (-1) abs_parms.Rd:74: Lost braces; missing escapes or markup?
    74 |    \item $a_{300}$ absorbance at 300 nm
       |             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ggeem.Rd: eem_extract
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Yan Li <yanli_@jlu.edu.cn>’

The Description field contains
  (2023), <https://www.biorxiv.org/content/10.1101/2023.05.30.542607v1>].
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
Maintainer: ‘Marek Hlavac <marek.hlavac@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marek",
                    family = "Hlavac",
                    role = c("aut", "cre"),
                    email = "marek.hlavac@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) stargazer.Rd:229: Lost braces
   229 |   \item{report}{a character string containing only elements of {\code{"v"}, \code{"c"}, \code{"s"},\code{"t"}, \code{"p"}, \code{"*"}} that determines whether, and in which order, variable names (\code{"v"}), coefficients (\code{"c"}), standard errors/confidence intervals (\code{"s"}), test statistics (\code{"t"}) and p-values (\code{"p"}) should be reported in regression tables. If one of the aforementioned letters is followed by an asterisk (\code{"*"}), significance stars will be reported next to the corresponding statistic.}
       |                                                                ^
checkRd: (-1) stargazer.Rd:246: Lost braces
   246 |   \item{table.placement}{a character string containing only elements of {\code{"h"}, \code{"t"},\code{"b"}, \code{"p"}, \code{"!"}, \code{"H"}} that determines the table placement in its LaTeX floating environment.}
       |                                                                         ^
Maintainer: ‘Felix Cheysson <felix@cheysson.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Felix",
                    family = "Cheysson",
                    role = c("aut", "cre"),
                    email = "felix@cheysson.fr")
as necessary.
Maintainer: ‘Yannis Barboni <yannis.barboni1@gmail.com>’

The Description field contains
  to local spread of plant diseases." 2019. <arXiv:1811.06782>, using a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘stat_frequency.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘character_dimensions.Rd’ ‘constellation_as_multistar.Rd’
    ‘constellation_as_tibble_list.Rd’ ‘define_dimension.Rd’
    ‘define_fact.Rd’ ‘dm_mrs_age.Rd’ ‘dm_mrs_cause.Rd’
    ‘filter_dimension.Rd’ ‘filter_fact_rows.Rd’
    ‘get_conformed_dimension.Rd’ ‘get_conformed_dimension_names.Rd’
    ‘get_dimension.Rd’ ‘get_dimension_attribute_names.Rd’
    ‘get_dimension_names.Rd’ ‘get_measure_names.Rd’ ‘get_star_schema.Rd’
    ‘get_star_schema_names.Rd’ ‘incremental_refresh_constellation.Rd’
    ‘incremental_refresh_star_schema.Rd’ ‘match_records.Rd’
    ‘modify_conformed_dimension_records.Rd’ ‘modify_dimension_records.Rd’
    ‘ms_mrs.Rd’ ‘ms_mrs_test.Rd’ ‘multistar_as_flat_table.Rd’
    ‘purge_dimensions_constellation.Rd’ ‘purge_dimensions_star_schema.Rd’
    ‘rename_dimension.Rd’ ‘rename_dimension_attributes.Rd’
    ‘rename_fact.Rd’ ‘rename_measures.Rd’ ‘role_playing_dimension.Rd’
    ‘run_query.Rd’ ‘select_dimension.Rd’ ‘select_fact.Rd’ ‘snake_case.Rd’
    ‘st_mrs_age.Rd’ ‘st_mrs_age_test.Rd’ ‘st_mrs_age_w10.Rd’
    ‘st_mrs_age_w11.Rd’ ‘st_mrs_age_w_test.Rd’ ‘st_mrs_cause.Rd’
    ‘st_mrs_cause_test.Rd’ ‘st_mrs_cause_w10.Rd’ ‘st_mrs_cause_w11.Rd’
    ‘st_mrs_cause_w_test.Rd’ ‘star_schema_as_flat_table.Rd’
    ‘star_schema_as_multistar.Rd’ ‘star_schema_as_tibble_list.Rd’
    ‘update_record.Rd’ ‘update_selection.Rd’
    ‘update_selection_general.Rd’ ‘updates_st_mrs_age.Rd’
    ‘updates_st_mrs_age_test.Rd’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘prcomp.Rd’
Maintainer: ‘Haolun Shi <shl2003@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haolun",
                      family = "Shi",
                      role = c("aut", "cre"),
                      email = "shl2003@connect.hku.hk"),
               person(given = "Guosheng",
                      family = "Yin",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de",
                      comment = c(ORCID = "0000-0002-8226-3132")),
               person(given = "Oliver",
                      family = "Luedtke",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-9744-3059")))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) multiCUMSUM.Rd:33: Escaped LaTeX specials: \&
Maintainer: ‘Robin Lock <rlock@stlawu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ann",
                      family = "Cannon",
                      role = "aut"),
               person(given = "George",
                      family = "Cobb",
                      role = "aut"),
               person(given = "Bradley",
                      family = "Hartlaub",
                      role = "aut"),
               person(given = "Julie",
                      family = "Legler",
                      role = "aut"),
               person(given = "Robin",
                      family = "Lock",
                      role = c("aut", "cre"),
                      email = "rlock@stlawu.edu"),
               person(given = "Thomas",
                      family = "Moore",
                      role = "aut"),
               person(given = "Allan",
                      family = "Rossman",
                      role = "aut"),
               person(given = "Jeffrey",
                      family = "Witmer",
                      role = "aut"))
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/statmanrobin/Stat2Data
which should likely be
  https://github.com/statmanrobin/Stat2Data/issues
instead.
checkRd: (-1) AutoPollution.Rd:16: Lost braces
    16 |     \code{Side} \tab {Side of vehicle: code{1}=right or \code{2}=left}\cr
       |                                            ^
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Statamarkdown-package.rd: knitr-package
  stata_engine.rd: knit_engines
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  elapsed.Rd: week, month, year
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) statcan_data.Rd:22: Lost braces; missing escapes or markup?
    22 | \code{statcan_data()} function has 2 arguments to fulfill to get data: {tableNumber} & {lang}.
       |                                                                        ^
checkRd: (-1) statcan_data.Rd:22: Lost braces; missing escapes or markup?
    22 | \code{statcan_data()} function has 2 arguments to fulfill to get data: {tableNumber} & {lang}.
       |                                                                                        ^
checkRd: (-1) statcan_search.Rd:18: Lost braces; missing escapes or markup?
    18 | The \code{statcan_search()} function has 2 arguments to fulfill to find a database: {keywords} and {lang}.
       |                                                                                     ^
checkRd: (-1) statcan_search.Rd:18: Lost braces; missing escapes or markup?
    18 | The \code{statcan_search()} function has 2 arguments to fulfill to find a database: {keywords} and {lang}.
       |                                                                                                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘od_list.R’ ‘od_resource.R’ ‘od_utils.R’ ‘other_endpoints.R’
    ‘sc_data.R’ ‘schema.R’ ‘schema_uri.R’ ‘sdmx_table.R’ ‘table.R’
    ‘table_as_data_frame.R’ ‘table_json.R’ ‘table_meta.R’ ‘table_saved.R’
Maintainer: ‘Dylan Beijers <dylanbeijers@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  runMultiTraitGwas.Rd: GWAS
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Gordon Smyth <smyth@wehi.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gordon",
                      family = "Smyth",
                      role = c("cre", "aut"),
                      email = "smyth@wehi.edu.au"),
               person(given = "Lizhong",
                      family = "Chen",
                      role = "aut"),
               person(given = "Yifang",
                      family = "Hu",
                      role = "ctb"),
               person(given = "Peter",
                      family = "Dunn",
                      role = "ctb"),
               person(given = "Belinda",
                      family = "Phipson",
                      role = "ctb"),
               person(given = "Yunshun",
                      family = "Chen",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>, University of New South Wales), Skye Bender-deMoll [ctb], Chad Klumb [ctb] (University of Washington)’
  Authors@R: ‘Pavel N. Krivitsky [aut, cre] (ORCID: <https://orcid.org/0000-0002-9101-3362>, affiliation: University of New South Wales), Skye Bender-deMoll [ctb], Chad Klumb [ctb] (affiliation: University of Washington)’
Found the following possibly unsafe calls:
File ‘statnet.common/R/control.utilities.R’:
  unlockBinding("snctrl", environment(snctrl))
  unlockBinding("snctrl", environment(update_my_snctrl))
Maintainer: ‘Martina Morris <morrism@uw.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tables.R’
Maintainer: ‘Carlos Trucios <ctrucios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Trucios",
                    role = c("aut", "cre"),
                    email = "ctrucios@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘quote_tags.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  quote_cloud.Rd: wordcloud
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Hossein Azari Soufiani <azari.hossein@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hossein", "Azari"),
                      family = "Soufiani",
                      role = c("aut", "cre"),
                      email = "azari.hossein@gmail.com"),
               person(given = "William",
                      family = "Chen",
                      role = "aut"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
checkRd: (-1) sample2indp.pow.Rd:48: Lost braces
    48 | Pooled standard deviation= \code{sp} = sqrt{((n1 - 1) sigma1^2 +(n2 - 1) sigma2^2) / (n1 + n2 - 2)}
       |                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Heat.Rd: pheatmap
  ImpPlot.Rd: randomForest, gbm
  cv_glmnet_plot.Rd: glmnet
  esSim.Rd: lmFit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Brett Naul <brettnaul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brett",
                    family = "Naul",
                    role = c("aut", "cre"),
                    email = "brettnaul@gmail.com")
as necessary.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Marco Giuliano <mgiuliano.mail@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Giuliano",
                    role = c("aut", "cre"),
                    email = "mgiuliano.mail@gmail.com")
as necessary.
Maintainer: ‘Benjamin Risk <bbr28@cornell.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "B."),
                      family = "Risk",
                      role = "aut"),
               person(given = c("Nicholas", "A."),
                      family = "James",
                      role = "aut"),
               person(given = c("David", "S."),
                      family = "Matteson",
                      role = "aut"),
               person(given = "Benjamin",
                      family = "Risk",
                      role = "cre",
                      email = "bbr28@cornell.edu"))
as necessary.
Maintainer: ‘David Leiva <dleivaur@ub.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "Leiva", "&", "Han", "de", "Vries"),
                      family = "<J.deVries1@uu.nl>.",
                      role = "aut",
                      email = "J.deVries1@uu.nl"),
               person(given = "David",
                      family = "Leiva",
                      role = "cre",
                      email = "dleivaur@ub.edu"))
as necessary.
Maintainer: ‘Cedric E Ginestet <cedric.ginestet@kcl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Cedric", "E"),
                    family = "Ginestet",
                    role = c("aut", "cre"),
                    email = "cedric.ginestet@kcl.ac.uk")
as necessary.
Maintainer: ‘Jean-Baptiste Camps <jbcamps@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jean-Baptiste", "Camps", ";", "Florian"),
                      family = "Cafiero",
                      role = "aut"),
               person(given = "Jean-Baptiste",
                      family = "Camps",
                      role = "cre",
                      email = "jbcamps@hotmail.com"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: stemmatology-utils
    From: README.md
  URI: 10.1484/M.LECTIO-EB.5.102565
    From: README.md

Found the following URLs which should use \doi (with the DOI name only):
  File ‘PCC.Exploratory.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.Stemma.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.buildGroup.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.conflicts.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.disagreement.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.elimination.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.equipollent.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.overconflicting.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘PCC.reconstructModel.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘fournival.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘heinrichi.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘notreBesoin.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘parzival.Rd’:
    https://doi.org/10.1016/j.jtbi.2003.11.022
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
  File ‘stemmatology-package.Rd’:
    http://dx.doi.org/10.1484/M.LECTIO-EB.5.102565
Maintainer: ‘Larissa A. Matos <larissa.amatos@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Sergio Garofalo <sergio.garofalo96@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergio",
                    family = "Garofalo",
                    role = c("aut", "cre"),
                    email = "sergio.garofalo96@gmail.com")
as necessary.
Maintainer: ‘Arya Ebadi <aeba3842@uni.sydney.edu.au>’

The Description field contains
  (2020) <arXiv:2011.11939>. Such setups include target-decoy competition
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Leandro A. Pereira <leandro.ap@ufu.br>’

The Description field contains
  hypothesis test. Pinto & Pereira (2021) <arXiv:2109.07978>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Eleni Vradi <vradi.eleni@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eleni",
                    family = "Vradi",
                    role = c("aut", "cre"),
                    email = "vradi.eleni@gmail.com")
as necessary.
checkRd: (-1) tuneParam.Rd:28: Lost braces; missing escapes or markup?
    28 | It supports the BFGS optimization method ('QN') from the optim {stats} function, the Hooke-Jeeves derivative-free
       |                                                                ^
checkRd: (-1) tuneParamCL2.Rd:28: Lost braces; missing escapes or markup?
    28 | It supports the BFGS optimization method ('QN') from the optim {stats} function, the Hooke-Jeeves derivative-free
       |                                                                ^
Maintainer: ‘Mee Young Park <meeyoung@google.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mee", "Young"),
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "meeyoung@google.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"))
as necessary.
Maintainer: ‘Wai-ki Yip <yuser86@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wai-ki",
                      family = "Yip",
                      role = c("aut", "cre"),
                      email = "yuser86@yahoo.com"),
               person(given = "Ann",
                      family = "Lazar",
                      role = "ctb"),
               person(given = "David",
                      family = "Zahrieh",
                      role = "ctb"),
               person(given = "Chip",
                      family = "Cole",
                      role = "ctb"),
               person(given = "Ann",
                      family = "Lazar",
                      role = "ctb"),
               person(given = "Marco",
                      family = "Bonetti",
                      role = "ctb"),
               person(given = "Victoria",
                      family = "Wang",
                      role = "ctb"),
               person(given = "William",
                      family = "Barcella",
                      role = "ctb"),
               person(given = "Sergio",
                      family = "Venturini",
                      role = "ctb"))
as necessary.
Maintainer: ‘Chu-Lan Michael Kao <chulankao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chao",
                      family = "Du",
                      role = "aut"),
               person(given = c("Chu-Lan", "Michael"),
                      family = "Kao",
                      role = c("aut", "cre"),
                      email = "chulankao@gmail.com"),
               person(given = "Samuel",
                      family = "Kou",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Kendro Vincent <vincent.kendro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yu-Chin",
                      family = "Hsu",
                      role = "aut"),
               person(given = "Kendro",
                      family = "Vincent",
                      role = c("aut", "cre"),
                      email = "vincent.kendro@gmail.com"))
as necessary.
Maintainer: ‘Aaron Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aaron",
                      family = "Olsen",
                      role = c("aut", "cre"),
                      email = "aarolsen@gmail.com"),
               person(given = "Annat",
                      family = "Haber",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) landmarkMatrixToList.Rd:10: Lost braces
    10 |   \item{semilandmark.pattern}{a regular expression pattern passed to \code{sub()} for identifying and grouping curve points. The default is landmark names ending in one or more numbers. To disable grouping, set to code{''}.}
       |                                                                                                                                                                                                                           ^
checkRd: (-1) docker_config_collection.Rd:11: Lost braces; missing escapes or markup?
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("config")}
       | ^
checkRd: (-1) docker_container.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_container")}
       | ^
checkRd: (-1) docker_image_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("image")}
       | ^
checkRd: (-1) docker_plugin_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("plugin")}
       | ^
checkRd: (-1) docker_service_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("service")}
       | ^
checkRd: (-1) docker_task.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_task")}
       | ^
Maintainer: ‘Tomas Johannesson <tj@vedur.is>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tomas", "Johannesson", "&", "Halldor"),
                      family = "Bjornsson",
                      role = "aut"),
               person(given = c("Icelandic", "Met.", "Office;", "Gabor"),
                      family = "Grothendieck",
                      role = "aut"),
               person(given = "Tomas",
                      family = "Johannesson",
                      role = "cre",
                      email = "tj@vedur.is"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  STLK.Rd: Kest
  STLg.Rd: pcf
  as.lpp.stlpp.Rd: as.lpp, lpp
  as.stlpp.Rd: ppp, lpp, linnet
  as.tpp.stlpp.Rd: lpp, as.lpp
  density.stlpp.Rd: density.lpp, densityQuick.lpp, bw.scott.iso
  densityVoronoi.stlpp.Rd: densityVoronoi.lpp
  densityVoronoi.tpp.Rd: densityVoronoi.lpp
  methods.stlpp.Rd: as.linim
  rpoistlpp.Rd: ppp
  rthin.stlpp.Rd: rthin
  stlpp.Rd: as.ppp, lpp, linnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Antonio Coppola <acoppola@alumni.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Coppola",
                      role = c("aut", "cre"),
                      email = "acoppola@alumni.harvard.edu"),
               person(given = "Margaret",
                      family = "Roberts",
                      role = "aut"),
               person(given = "Brandon",
                      family = "Stewart",
                      role = "aut"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "aut"))
as necessary.

File 'R/stmCorrViz-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Found the following files/directories:
  ‘corrviz.html’
Maintainer: ‘Dan Zangri <dzangri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Zangri",
                      role = c("aut", "cre"),
                      email = "dzangri@gmail.com"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "ctb"),
               person(given = "Brandon",
                      family = "Stewart",
                      role = "ctb"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘stmgui-package.Rd’:
    \keyword{ stm, shiny }
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_diag.Rd’ ‘get_effects.Rd’ ‘get_network.Rd’ ‘stm_diag.R’
    ‘stm_effects.R’ ‘stm_network.R’
Maintainer: ‘Andres Villegas <andresmauriciovillegas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andres",
                      family = "Villegas",
                      role = c("aut", "cre"),
                      email = "andresmauriciovillegas@gmail.com"),
               person(given = "Pietro",
                      family = "Millossovich",
                      role = "aut",
                      email = "Pietro.Millossovich.1@city.ac.uk"),
               person(given = "Vladimir",
                      family = "Kaishev",
                      role = "aut",
                      email = "Vladimir.Kaishev.1@city.ac.uk"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: www.mortality.org
    From: man/EWMaleData.Rd
Maintainer: ‘Matthias Salvisberg <matthias.salvisberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthias",
                    family = "Salvisberg",
                    role = c("aut", "cre"),
                    email = "matthias.salvisberg@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  labelTopics.Rd: lda
  topicLasso.Rd: glmnet, cv.glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Devin S. Johnson <devin.johnson@noaa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Devin", "S."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "devin.johnson@noaa.gov")
as necessary.
Maintainer: ‘Aleš Žiberna <ales.ziberna@fdv.uni-lj.si>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stochBlockORP.Rd: genRandomPar
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Grant Humphries <grwhumphries@blackbawks.net>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Grant Humphries [aut, cre] (<https://orcid.org/0000-0001-5783-9892>), Bruno Caneco [aut], Aonghais Cook [aut], Elizabeth Masden [aut], Marine Scotland [fnd, cph], HiDef [cph], DMPstats [cph], Kelly Street [rev] (@kstreet13)’
  Authors@R: ‘Grant Humphries [aut, cre] (ORCID: <https://orcid.org/0000-0001-5783-9892>), Bruno Caneco [aut], Aonghais Cook [aut], Elizabeth Masden [aut], Marine Scotland [fnd, cph], HiDef [cph], DMPstats [cph], Kelly Street [rev] (GITHUB: @kstreet13)’
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.

The Description field contains
  2016 <arXiv:1401.7020>), adaQN (adaptive quasi-Newton) (Keskar, N.S.,
  Berahas, A.S., 2016, <arXiv:1511.01169>).  Provides functions for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Functions.R’
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘stocks.Rd’:
    https://doi.org/10.7287/peerj.preprints.3188v1
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sepstlppm.R’ ‘sepstppm.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  globaldiag.Rd: STIKhat, STLKinhom
  localSTLKinhom.Rd: STLKinhom, STLginhom
  localdiag.Rd: KLISTAhat
  localtest.Rd: KLISTAhat, LISTAhat
  plot.globaldiag.Rd: STLKinhom
  plot.locstppm.Rd: OS
  plot.sepstppm.Rd: OS
  plot.stlgcppm.Rd: OS
  plot.stlp.Rd: plot3D
  plot.stppm.Rd: OS
  sepstlppm.Rd: lppm
  sepstppm.Rd: ppm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Allen Day <allenday@allenday.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Allen",
                    family = "Day",
                    role = c("aut", "cre"),
                    email = "allenday@allenday.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Thomas Arsouze <thomas.arsouze@cirad.fr>’

The BugReports field in DESCRIPTION has
  https://github.com/umr-amap/StormR/issues/new/choose
which should likely be
  https://github.com/umr-amap/StormR/issues/new/choose/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘defStormsList.R’
Maintainer: ‘Deniz Akdemir <deniz.akdemir.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Deniz",
                    family = "Akdemir",
                    role = c("aut", "cre"),
                    email = "deniz.akdemir.work@gmail.com")
as necessary.
Maintainer: ‘Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "I.",
                      family = "Zhbannikov",
                      role = "aut"),
               person(given = "Liang",
                      family = "He",
                      role = "aut"),
               person(given = "K.",
                      family = "Arbeev",
                      role = "aut"),
               person(given = "I.",
                      family = "Akushevich",
                      role = "aut"),
               person(given = "A.",
                      family = "Yashin.",
                      role = "aut"),
               person(given = c("Ilya", "Y."),
                      family = "Zhbannikov",
                      role = "cre",
                      email = "ilya.zhbannikov@duke.edu"))
as necessary.
Maintainer: ‘Edith Gabriel <edith.gabriel@inrae.fr>’

The BugReports field in DESCRIPTION has
  https://github.com/stpp-GitHub-community
which should likely be
  https://github.com/stpp-GitHub-community/issues
instead.
Maintainer: ‘Monsuru Adepeju <monsuur2010@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monsuru",
                    family = "Adepeju",
                    role = c("cre", "aut"),
                    email = "monsuur2010@yahoo.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/Manalytics/stppSim/issues/new/choose
which should likely be
  https://github.com/Manalytics/stppSim/issues/new/choose/issues
instead.
Maintainer: ‘Samuel Soubeyrand <samuel.soubeyrand@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Soubeyrand",
                      role = "aut"),
               person(family = "S.",
                      role = "aut"),
               person(family = "Tollenaere",
                      role = "aut"),
               person(family = "C.",
                      role = "aut"),
               person(family = "Haon-Lasportes",
                      role = "aut"),
               person(family = "E.",
                      role = "aut"),
               person(family = "Laine",
                      role = "aut"),
               person(family = "A.-L.",
                      role = "aut"),
               person(given = "Samuel",
                      family = "Soubeyrand",
                      role = "cre",
                      email = "samuel.soubeyrand@inra.fr"))
as necessary.
checkRd: (-1) powderymildew.Rd:14-16: Lost braces
    14 | \code{$demographic.coord}{
       |                          ^
checkRd: (-1) powderymildew.Rd:18-20: Lost braces
    18 | \code{$genetic.coord}{
       |                      ^
checkRd: (-1) powderymildew.Rd:22-24: Lost braces
    22 | \code{$demographic.measures}{
       |                             ^
checkRd: (-1) powderymildew.Rd:26-28: Lost braces
    26 | \code{$genetic.frequencies}{
       |                            ^
Maintainer: ‘Rachael C. Aikens <rockyaikens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jose Brito <jambrito@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jose",
                      family = "Brito",
                      role = c("aut", "cre"),
                      email = "jambrito@gmail.com"),
               person(given = "Pedro",
                      family = "Silva",
                      role = "aut"),
               person(given = "Tomas",
                      family = "Veiga",
                      role = "aut"))
as necessary.
Maintainer: ‘Miles Ott <miles_ott@alumni.brown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miles",
                    family = "Ott",
                    role = c("aut", "cre"),
                    email = "miles_ott@alumni.brown.edu")
as necessary.
Maintainer: ‘Julian Busch <jb@quants.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julian",
                    family = "Busch",
                    role = c("aut", "cre"),
                    email = "jb@quants.ch")
as necessary.
Found the following files/directories:
  ‘myNewStrat.R’
Maintainer: ‘Michael Heath <m.heath@strath.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Heath",
                      role = c("aut", "cre"),
                      email = "m.heath@strath.ac.uk"),
               person(given = "Ian",
                      family = "Thurlbeck",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) StrathE2E2-package.Rd:70: Lost braces; missing escapes or markup?
    70 | {Basic model operations:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:79: Lost braces; missing escapes or markup?
    79 | {Parameter estimation:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:88: Lost braces; missing escapes or markup?
    88 | {Sensitivity and Monte Carlo analyses:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:98: Lost braces; missing escapes or markup?
    98 | {Compare model runs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:105: Lost braces; missing escapes or markup?
   105 | {Fishery yield analysis:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:111: Lost braces; missing escapes or markup?
   111 | {Visualize model inputs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:117: Lost braces; missing escapes or markup?
   117 | {Visualize model outputs:} \cr
       | ^
Maintainer: ‘Amr ElRafey <aelrafey@gmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Farrokh",
                      family = "Alemi",
                      role = "aut",
                      email = "falemi@gmu.edu"),
               person(given = "Amr",
                      family = "ElRafey",
                      role = c("aut", "cre"),
                      email = "aelrafey@gmu.edu"))
as necessary.
Maintainer: ‘Thomas Jemielita <thomasjemielita@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Jemielita",
                    role = c("aut", "cre"),
                    email = "thomasjemielita@gmail.com")
as necessary.

The Description field contains
  2019 <arXiv:1912.03337>. This package is in beta and will be
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Sebastien Wouters <wouterseb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastien",
                      family = "Wouters",
                      role = c("aut", "cre"),
                      email = "wouterseb@gmail.com"),
               person(given = c("Adam", "D."),
                      family = "Smith",
                      role = "ctb"))
as necessary.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xiangdong Gu <ustcgxd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangdong",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "ustcgxd@gmail.com"),
               person(given = "Raji",
                      family = "Balasubramanian",
                      role = "aut"))
as necessary.
Maintainer: ‘Priyanga Dilini Talagala <pritalagala@gmail.com>’

The Description field contains
  <arXiv:1908.04000> for detecting anomalies in high-dimensional data
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Opgen-Rhein",
                      role = "aut"),
               person(given = "Verena",
                      family = "Zuber",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Maintainer: ‘Nele Schuwirth <nele.schuwirth@eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nele",
                      family = "Schuwirth",
                      role = c("aut", "cre"),
                      email = "nele.schuwirth@eawag.ch"),
               person(given = "Peter",
                      family = "Reichert",
                      role = "aut"),
               person(given = "Mikolaj",
                      family = "Rybinski",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apportion_inverse.R’ ‘apportion_polygon.R’ ‘apportion_web.R’
    ‘prep_reach_dist.R’
Maintainer: ‘Stephen A Sefick Jr. <ssefick@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stephen", "A"),
                    family = "Sefick Jr.",
                    role = c("aut", "cre"),
                    email = "ssefick@gmail.com")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@lyle.smu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/mhahsler/streamMOA
which should likely be
  https://github.com/mhahsler/streamMOA/issues
instead.
Maintainer: ‘Pablo Barbera <pablo.barbera@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pablo",
                    family = "Barbera",
                    role = c("aut", "cre"),
                    email = "pablo.barbera@nyu.edu")
as necessary.
Maintainer: ‘Sebastian Henz <bastihz.dev@posteo.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ecxsys.Rd’:
    https://doi.org/10.1038/s41598-019-51645-4
  File ‘multi_tox.Rd’:
    https://doi.org/10.1186/s12302-020-00394-7
  File ‘multiple_stress.Rd’:
    https://doi.org/10.1021/acs.est.9b04293
    https://doi.org/10.1186/s12302-020-00394-7
  File ‘stressaddition-package.Rd’:
    https://doi.org/10.1038/s41598-019-51645-4
    https://doi.org/10.1186/s12302-020-00394-7
Maintainer: ‘Matt Barry <mrb@softisms.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Barry",
                    role = c("aut", "cre"),
                    email = "mrb@softisms.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Alessandro Barbiero <alessandro.barbiero@unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessandro",
                      family = "Barbiero",
                      role = c("aut", "cre"),
                      email = "alessandro.barbiero@unimi.it"),
               person(given = "Riccardo",
                      family = "Inchingolo",
                      role = "aut",
                      email = "dott.inchingolo_r@libero.it"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Tom Drake <t.drake@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Drake",
                    role = c("aut", "cre"),
                    email = "t.drake@ed.ac.uk")
as necessary.
File ‘stringfish/libs/stringfish.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘LEVELS’, ‘STDVEC_DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Alexander Hoyle <alexander@alexanderhoyle.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Hoyle",
                    role = c("aut", "cre"),
                    email = "alexander@alexanderhoyle.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  str_replace.Rd: stri_replace
  str_split.Rd: stri_split
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Bert Gunter <bgunter@comcast.net>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘strucplot.Rd’:
    \concept{
      structured plots,structured trellis plot [TRUNCATED]
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘chunks_of_n.Rd’ ‘generic_stroke.R’ ‘index_plot.R’ ‘mfi_calc.R’
    ‘mfi_domains.Rd’ ‘pase_calc.R’
efpFunctional: multiple local function definitions for ‘plotProcess’
  with different formal arguments
mefp.efp: multiple local function definitions for ‘computeEmpProc’ with
  different formal arguments
Maintainer: ‘Moritz Berger <Moritz.Berger@imbie.uni-bonn.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Moritz",
                    family = "Berger",
                    role = c("aut", "cre"),
                    email = "moritz.berger@imbie.uni-bonn.de")
as necessary.
Maintainer: ‘Yifu Liu <2012johnnyliu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yifu",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "2012johnnyliu@gmail.com"),
               person(given = "Anru",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Oskar Hansson <oskhan@ous-hf.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oskar",
                    family = "Hansson",
                    role = c("aut", "cre"),
                    email = "oskhan@ous-hf.no")
as necessary.
checkRd: (-1) calculateStatistics.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{quant}{numeric quantile to calculate {0,1}, default 0.95.}
       |                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  calculateAllele.Rd: data.table
  calculateSpike.Rd: data.table
  combine_gui.Rd: rbind.fill
  editData_gui.Rd: gdf, gtable
  ggsave_gui.Rd: ggsave
  plotDistribution_gui.Rd: geom_density
  plotGroups_gui.Rd: stat_ecdf
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) cmss.Rd:21: Lost braces
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                        ^
checkRd: (-1) cmss.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                            ^
checkRd: (-1) cmss.Rd:21: Lost braces
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                                        ^
checkRd: (-1) cmss.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                                            ^
Author field differs from that derived from Authors@R
  Author:    ‘Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>), Lorenz Walthert [cre, aut], Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
  Authors@R: ‘Kirill Müller [aut] (ORCID: <https://orcid.org/0000-0002-1416-3412>), Lorenz Walthert [cre, aut], Indrajeet Patil [ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Maintainer: ‘Arturo Erdely <arturo.erdely@comunidad.unam.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arturo",
                    family = "Erdely",
                    role = c("aut", "cre"),
                    email = "arturo.erdely@comunidad.unam.mx")
as necessary.

File 'R/subcopem2D-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘I. Manjula Schou <im.schou@yahoo.com.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("I.", "Manjula"),
                    family = "Schou",
                    role = c("aut", "cre"),
                    email = "im.schou@yahoo.com.au")
as necessary.
Maintainer: ‘Xinrui Shi <xinrui103@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xinrui",
                      family = "Shi",
                      role = c("aut", "cre"),
                      email = "xinrui103@163.com"),
               person(given = "Chunquan",
                      family = "Li",
                      role = "aut"),
               person(given = "Xia",
                      family = "Li",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotAnnGraph.Rd: plot.igraph
  plotGraphL.Rd: plot.igraph, layout.random
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jerome Collet <jeromepcollet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jerome",
                    family = "Collet",
                    role = c("aut", "cre"),
                    email = "jeromepcollet@gmail.com")
as necessary.
checkRd: (-1) P3C.Rd:18: Lost braces; missing escapes or markup?
    18 |  used for this will be 1.00*10^{-PoissonThreshold}.}
       |                                ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  subspace.Rd: ggvis
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Andrew Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xudong",
                      family = "Han",
                      role = "aut"),
               person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Chonghui",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Scott Barlowe <sabarlowe@email.wcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Scott",
                    family = "Barlowe",
                    role = c("aut", "cre"),
                    email = "sabarlowe@email.wcu.edu")
as necessary.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "Bill.Venables@gmail.com")
as necessary.
Maintainer: ‘David Brahm <brahm@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Brahm",
                      role = c("aut", "cre"),
                      email = "brahm@alum.mit.edu"),
               person(given = "Greg",
                      family = "Snow",
                      role = "aut",
                      email = "Greg.Snow@intermountainmail.org"),
               person(given = c("with", "contributions", "from", "Curt"),
                      family = "Seeliger",
                      role = "aut",
                      email = "Seeliger.Curt@epamail.epa.gov"),
               person(given = "Henrik",
                      family = "Bengtsson.",
                      role = "aut",
                      email = "hb@maths.lth.se"))
as necessary.
Maintainer: ‘Dianne Cook <dicook@monash.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) fp19.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:12-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:25: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_glyph_ribbon.R’ ‘geom_glyph_ribbon.Rd’ ‘geom_glyph_segment.Rd’
    ‘theme_glyph.Rd’
checkRd: (-1) suggests.Rd:14: Lost braces; missing escapes or markup?
    14 | {suggests} aims to make that workflow as minimal and painless as possible,
       | ^
Maintainer: ‘Ting-Huei Chen <tingstat22@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ting-Huei",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "tingstat22@gmail.com")
as necessary.
Maintainer: ‘Alexander Fischer <alexander-fischer1801@t-online.de>’

The Description field contains
  2022; <arXiv:2205.03288v1>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
File ‘sumR/libs/sumR.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Anna Vesely <anna.vesely@phd.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anna",
                    family = "Vesely",
                    role = c("aut", "cre"),
                    email = "anna.vesely@phd.unipd.it")
as necessary.

The Description field contains
  may be found in Vesely, Finos, and Goeman (2020) <arXiv:2102.11759>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) sunburst.Rd:30: Lost braces; missing escapes or markup?
    30 | nested d3 JSON hierarchy with `{name:...,  children:[];}`.  \code{csvdata}
       |                                ^
checkRd: (-1) sunburst.Rd:88: Lost braces; missing escapes or markup?
    88 | \item{jsondata}{\code{deprecated} use data argument instead; data in nested d3 JSON hierarchy with `{name:...,  children:[];}`}
       |                                                                                                     ^
checkRd: (-1) sund2b.Rd:22: Lost braces; missing escapes or markup?
    22 | nested d3 JSON hierarchy with `{name:...,  children:[];}`.  \code{list}, \code{character},
       |                                ^
Maintainer: ‘Roel Braekers <roel.braekers@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leen",
                      family = "Prenen",
                      role = "aut"),
               person(given = "Roel",
                      family = "Braekers",
                      role = c("aut", "cre"),
                      email = "roel.braekers@uhasselt.be"),
               person(given = "Luc",
                      family = "Duchateau",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = "aut"))
as necessary.
Maintainer: ‘Yuri M. Zhukov <zhukov@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yuri", "M."),
                      family = "Zhukov",
                      role = c("aut", "cre"),
                      email = "zhukov@umich.edu"),
               person(given = "Jason",
                      family = "Byers",
                      role = "aut"),
               person(given = "Marty",
                      family = "Davidson",
                      role = "aut"))
as necessary.
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcel",
                      family = "Dettling",
                      role = "aut",
                      email = "marcel.dettling@zhaw.ch"),
               person(given = "Martin",
                      family = "Maechler",
                      role = c("aut", "cre"),
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Maintainer: ‘Tatsiana Khamiakova <t.tavita@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tatsiana",
                    family = "Khamiakova",
                    role = c("aut", "cre"),
                    email = "t.tavita@gmail.com")
as necessary.
checkRd: (-1) BiclustSet-class.Rd:19: Lost braces
    19 |     \item{\code{Number}:}{code{"numeric"}, number of biclusters in the set}
       |                               ^
Maintainer: ‘Le Bao <lbaole17@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Le Bao",
                      role = c("aut", "cre"),
                      email = "lbaole17@gmail.com"),
               person(given = "Jeff",
                      family = "Gill",
                      role = "aut",
                      email = "jgill@mac.com"),
               person(given = "Tsung-han",
                      family = "Tsai",
                      role = "aut",
                      email = "thtsai@nccu.edu.tw"),
               person(given = "Jonathan",
                      family = "Rapkin",
                      role = "aut"))
as necessary.
Maintainer: ‘Minghui Wang <minghui.wang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minghui",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "minghui.wang@mssm.edu"),
               person(given = "Yongzhong",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
checkRd: (-1) plot.Rd:42: Lost braces; missing escapes or markup?
    42 |  \item{color.off}{color code; specifying the color for set(s) which are "{absent}" for an intersection.}
       |                                                                          ^
Maintainer: ‘Aaron B. Shev <abshev@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aaron", "B."),
                    family = "Shev",
                    role = c("aut", "cre"),
                    email = "abshev@ucdavis.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mice.impute.SuperLearner.Rd: SuperLearner
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  KNNTrainer.Rd: R6Class
  LabelEncoder.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  level_pairs.Rd: tibble
  new_pairwise_tbl.Rd: tibble
  row_blank.Rd: tibble_row
  row_error.Rd: tibble_row
  row_term.Rd: tibble_row
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Ethan Alt <ethanalt@live.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ethan",
                    family = "Alt",
                    role = c("aut", "cre"),
                    email = "ethanalt@live.unc.edu")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) getFittedProbs.Rd:6-8: Lost braces
     6 | getFittedValues <- function(object) {
       |                                     ^
checkRd: (-1) getFittedProbs.Rd:14-16: Lost braces
    14 | getFittedValues <- function(object) {
       |                                     ^
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  surrosurv.Rd: optimx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Yunro Chung <yunro.chung@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yunro",
                    family = "Chung",
                    role = c("cre", "aut"),
                    email = "yunro.chung@asu.edu")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘surrosurvROC-package.Rd’:
    \keyword{biomarkers, inverse probability weighing, [TRUNCATED]
  File ‘surrosurvROC.Rd’:
    \keyword{biomarkers, inverse probability weighing, [TRUNCATED]
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Tian",
                      role = "aut"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"),
               person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"))
as necessary.
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Joao Pinto <joao.pinto@tecnico.ulisboa.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joao",
                      family = "Pinto",
                      role = c("aut", "cre"),
                      email = "joao.pinto@tecnico.ulisboa.pt"),
               person(given = "Andre",
                      family = "Verissimo",
                      role = "aut",
                      email = "andre.verissimo@tecnico.ulisboa.pt"),
               person(given = "Alexandra",
                      family = "Carvalho",
                      role = "aut",
                      email = "alexandra.carvalho@tecnico.ulisboa.pt"),
               person(given = "Susana",
                      family = "Vinga",
                      role = "aut",
                      email = "susanavinga@tecnico.ulisboa.pt"))
as necessary.
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hajime",
                    family = "Uno",
                    role = c("aut", "cre"),
                    email = "huno@jimmy.harvard.edu")
as necessary.
Maintainer: ‘Guo-You Lan <jj6020770416jj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hsin-wen",
                    family = "Chang",
                    role = c("aut", "cre"),
                    email = "hwchang@stat.sinica.edu.tw")
as necessary.
Maintainer: ‘"Thomas Lumley" <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Lumley",
                      role = "aut"),
               person(given = "Peter",
                      family = "Gao",
                      role = "aut"),
               person(given = "Ben",
                      family = "Schneider",
                      role = "aut"),
               person(given = "\"Thomas",
                      family = "Lumley\"",
                      role = "cre",
                      email = "t.lumley@auckland.ac.nz"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svycoplot.Rd: xyplot
  svycoxph.Rd: coxph, predict.coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hajime",
                      family = "Uno",
                      role = c("aut", "cre"),
                      email = "huno@jimmy.harvard.edu"),
               person(given = "Tianxi",
                      family = "Cai",
                      role = "aut"))
as necessary.
Maintainer: ‘Marta Sestelo <sestelo@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut"),
               person(given = "Marta",
                      family = "Sestelo",
                      role = c("aut", "cre"),
                      email = "sestelo@uvigo.es"),
               person(given = "Gustavo",
                      family = "Soutinho",
                      role = "aut"))
as necessary.
checkRd: (-1) tprob.Rd:138: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:139: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:140: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:141: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:142: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:143: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:145: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:146: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coxph_mpl_dc.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{mpl_h0t}{MPL estimates of the baseline hazard for T, i.e. h_{0T}(x_i)}
       |                                                                   ^
checkRd: (-1) coxph_mpl_dc.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{mpl_h0c}{MPL estimates of the baseline hazard for C, i.e. h_{0C}(x_i)}
       |                                                                   ^
checkRd: (-1) coxph_mpl_dc.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{mpl_H0t}{MPL estimates of the baseline cumulative hazard for T, i.e. H_{0T}(x_i)}
       |                                                                              ^
checkRd: (-1) coxph_mpl_dc.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{mpl_H0c}{MPL estimates of the baseline cumulative hazard for C, i.e. H_{0c}(x_i)}
       |                                                                              ^
checkRd: (-1) coxph_mpl_dc.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{mpl_S0t}{MPL estimates of the baseline survival for T, i.e. S_{0T}(x_i)}
       |                                                                     ^
checkRd: (-1) coxph_mpl_dc.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{mpl_S0c}{MPL estimates of the baseline survival for C, i.e. S_{0C}(x_i)}
       |                                                                     ^
Maintainer: ‘Paramita Saha-Chaudhuri <paramita.sahachaudhuri.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patrick", "J."),
                      family = "Heagerty",
                      role = "aut",
                      email = "heagerty@u.washington.edu"),
               person(given = c("packaging", "by", "Paramita"),
                      family = "Saha-Chaudhuri",
                      role = "aut",
                      email = "paramita.sahachaudhuri.work@gmail.com"),
               person(given = "Paramita",
                      family = "Saha-Chaudhuri",
                      role = "cre",
                      email = "paramita.sahachaudhuri.work@gmail.com"))
as necessary.
Maintainer: ‘Michael Komodromos <mk1019@ic.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Komodromos",
                    role = c("aut", "cre"),
                    email = "mk1019@ic.ac.uk")
as necessary.

The Description field contains
  information see Komodromos et al. (2021) <arXiv:2112.10270>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add.R’ ‘add_alive.Rd’ ‘add_bipoc.Rd’ ‘add_castaway.Rd’
    ‘add_demogs.Rd’ ‘add_finalist.Rd’ ‘add_full_name.Rd’ ‘add_gender.Rd’
    ‘add_jury.Rd’ ‘add_lgbt.Rd’ ‘add_result.Rd’ ‘add_tribe.Rd’
    ‘add_tribe_colour.Rd’ ‘add_winner.Rd’ ‘castaway_details.Rd’
    ‘filter_alive.Rd’ ‘filter_final_n.Rd’ ‘filter_finalist.Rd’
    ‘filter_jury.Rd’ ‘filter_new_era.Rd’ ‘filter_us.Rd’ ‘filter_vs.Rd’
    ‘filter_winner.Rd’ ‘filters.R’ ‘get.R’ ‘helpers.R’
Maintainer: ‘Chris Dardis <christopherdardis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Dardis",
                    role = c("aut", "cre"),
                    email = "christopherdardis@gmail.com")
as necessary.
checkRd: (-1) sf.Rd:66: Lost braces; missing escapes or markup?
    66 | A {data.table} which is stored as an attribute of
       |   ^
Maintainer: ‘Marta Bofill Roig <marta.bofillroig@meduniwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Marta", "Bofill"),
                      family = "Roig",
                      role = c("aut", "cre"),
                      email = "marta.bofillroig@meduniwien.ac.at"),
               person(given = c("Guadalupe", "Gomez"),
                      family = "Melis",
                      role = "ctb"),
               person(given = "Yu",
                      family = "Shen",
                      role = "ctb"))
as necessary.

The Description field contains
  found in Bofill, Shen & Gómez (2021) <arXiv:2008.12887>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘censor_event.Rd’ ‘survival_class.R’
Maintainer: ‘Xuefei Jia <xuefeij.ai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xuefei",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "xuefeij.ai@gmail.com")
as necessary.
Maintainer: ‘Stanislas Hubeaux <stan.hubeaux@bluewin.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stanislas",
                      family = "Hubeaux",
                      role = c("aut", "cre"),
                      email = "stan.hubeaux@bluewin.ch"),
               person(given = "Kaspar",
                      family = "Rufibach",
                      role = "aut",
                      email = "kaspar.rufibach@gmail.com"))
as necessary.

The Description field contains
  <arXiv:1402.0432>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ConvertWeibull.Rd: survreg
  NormalMeanDiffCens.Rd: Surv
  ParamSampleCens.Rd: Surv
  SurvRegCens.Rd: Surv, survreg
  WeibullDiag.Rd: Surv, plot.survfit
  WeibullReg.Rd: survreg, Surv
  censorContVar.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hajime",
                      family = "Uno",
                      role = c("aut", "cre"),
                      email = "huno@jimmy.harvard.edu"),
               person(given = "Lu",
                      family = "Tian",
                      role = "aut"),
               person(given = "Miki",
                      family = "Horiguchi",
                      role = "aut"),
               person(given = "Angel",
                      family = "Cronin",
                      role = "aut"),
               person(given = "Chakib",
                      family = "Battioui",
                      role = "aut"),
               person(given = "James",
                      family = "Bell",
                      role = "aut"))
as necessary.
Maintainer: ‘Rong Huang <roh019@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rong",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "roh019@ucsd.edu"),
               person(given = "Ronghui",
                      family = "Xu",
                      role = "aut",
                      comment = "Lily"))
as necessary.
Maintainer: ‘David Moriña Soler <dmorina@ub.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alexander Sibley <dcibioinformatics@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kouros",
                      family = "Owzar",
                      role = "aut"),
               person(given = "Zhiguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Nancy",
                      family = "Cox",
                      role = "aut"),
               person(given = "Sin-Ho",
                      family = "Jung",
                      role = "aut"),
               person(given = "Chanhee",
                      family = "Yi",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Sibley",
                      role = "cre",
                      email = "dcibioinformatics@duke.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhuowei Sun <sunzw21@mails.jlu.edu.cn>’

The Description field contains
  <arXiv:2310.15877> and Sun, D. et al. (2023) <arXiv:2308.15549>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Lior Rennert <liorr@clemson.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lior",
                      family = "Rennert",
                      role = c("aut", "cre"),
                      email = "liorr@clemson.edu"),
               person(given = "Yidan",
                      family = "Shi",
                      role = "aut",
                      email = "yidan.shi@pennmedicine.upenn.edu"))
as necessary.
checkRd: (-1) coxDT.Rd:76: Lost braces; missing escapes or markup?
    76 | The estimation procedure here is performed using coxph {survival} and inserting these estimated
       |                                                        ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘suso_gql_helpers.R’ ‘suso_gql_uploadMap.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stability.Rd: VAR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svDialogstcltk-package.Rd: dlg_message, dlg_input, dlg_list,
    dlg_open, dlg_save, dlg_dir
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Aaron M Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aaron", "M"),
                      family = "Olsen",
                      role = c("aut", "cre"),
                      email = "aarolsen@gmail.com"),
               person(given = c("Alejandro", "J"),
                      family = "Romero",
                      role = "aut"))
as necessary.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘createSyntaxFile.Rd’:
    \concept{ Syntax highlighting, code coloring }
  File ‘guiDDEInstall.Rd’:
    \concept{ Interprocess DDE communication, call tip [TRUNCATED]
  File ‘svIDE-package.Rd’:
    \concept{ GUI API IDE and code editor, language sy [TRUNCATED]
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) koInstall.Rd:24: Lost braces; missing escapes or markup?
    24 | set, svKomodo loads {svSocket}, starts the socket server listening to the
       |                     ^
checkRd: (-1) svKomodo-package.Rd:18: Lost braces; missing escapes or markup?
    18 | Komodo and (2) the present {svKomodo} R package that work hand in hand to
       |                            ^
checkRd: (-1) svKomodo-package.Rd:28: Lost braces; missing escapes or markup?
    28 | Nevertheless, the SciViews-K Komodo addin and the {svKomodo} R package
       |                                                   ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                          ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                                         ^
checkRd: (-1) svKomodo-package.Rd:37: Lost braces; missing escapes or markup?
    37 | Both SciViews-K and {svKomodo} should be considered archived items. I keep
       |                     ^
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Trevor",
                    family = "Hastie",
                    role = c("aut", "cre"),
                    email = "hastie@stanford.edu")
as necessary.
Maintainer: ‘Damien Challet <damien.challet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damien",
                    family = "Challet",
                    role = c("aut", "cre"),
                    email = "damien.challet@gmail.com")
as necessary.
Maintainer: ‘Uditha Amarananda Wijesuriya <u.wijesuriya@usi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Uditha", "Amarananda"),
                    family = "Wijesuriya",
                    role = c("aut", "cre"),
                    email = "u.wijesuriya@usi.edu")
as necessary.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘bibRNews.Rd’:
    \concept{ BibTeX bibliography, R News }
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

The Description field contains
  likelihood, as described in Lumley & Huang (2023) <arXiv:2311.13048>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mithat Gonen <gonenm@mskcc.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svy_vglm.Rd: vglm, svydesign, svrepdesign
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) eff_n.Rd:32: Lost braces; missing escapes or markup?
    32 | \code{\link[survey:surveysummary]{survey::svymean()}} and related functions from the {survey}
       |                                                                                      ^
Maintainer: ‘Martin Lauss <martin.lauss@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Lauss",
                    role = c("aut", "cre"),
                    email = "martin.lauss@med.lu.se")
as necessary.
Maintainer: ‘Xingye Qiao <qiao@math.binghamton.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘swa.Rd’:
    \keyword{classification,}
    \keyword{selection,}
Maintainer: ‘Jim Hughes <jphughes@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Hughes",
                      role = c("aut", "cre"),
                      email = "jphughes@uw.edu"),
               person(given = c("Navneet", "R."),
                      family = "Hakhu",
                      role = "aut"),
               person(given = "Emily",
                      family = "Voldal",
                      role = "aut"),
               person(given = "Fan",
                      family = "Xia",
                      role = "aut"))
as necessary.
checkRd: (-1) swDsn.Rd:28: Lost braces
    28 | numeric (scalar or vector): Relative treatment effect upon crossing over from control. Note that this is not the treatment effect (the treatment effect is specified in the call to other functions such as \code{swPwr} or \code{swSim})!  If \code{tx.effect.frac} is set to a scalar with value of 1, the standard SW CRT treatment effect will be presumed. If code{tx.effect.frac} is set to a scalar with a fractional value between 0 and 1, then only the first time point upon crossing over from control will have fractional relative treatment effect; the remaining exposure times will have a relative treatment effect of 1. If a vector of fractional treatment effect is specified, each element of the vector corresponds to the (fractional) treatment effect upon crossing over from control; if the length of the vector is less than total number of exposure times, the remaining time points will have a relative treatment effect value of 1; if the length of the vector is greater than total number of time points after crossing over, not all elements of \code{tx.effect.frac} will be used. The default value is (scalar) 1.
       |                                                                                                                                                                                                                                                                                                                                                                        ^
Maintainer: ‘Chung-hong Chan <chainsawtiney@gmail.com>’

The Description field contains
  (Mazini et al., 2019) <arXiv:1904.04047>, SemAxis (An et al., 2018)
  <arXiv:1806.05521>, Relative Negative Sentiment Bias (Sweeney &
  Test (Dev & Phillips, 2019) <arXiv:1901.07656>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sw_sweep.Rd: tk_make_future_timeseries
  tidiers_bats.Rd: bats, tbats
  tidiers_ets.Rd: ets
  tidiers_nnetar.Rd: nnetar
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mans Magnusson <mons.magnusson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mans",
                      family = "Magnusson",
                      role = c("aut", "cre"),
                      email = "mons.magnusson@gmail.com"),
               person(given = "Erik",
                      family = "Bulow",
                      role = "aut"))
as necessary.
Maintainer: ‘Juan Xiong <jxiong@szu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juan",
                      family = "Xiong",
                      role = c("aut", "cre"),
                      email = "jxiong@szu.edu.cn"),
               person(given = c("Grace", "Y."),
                      family = "Yi",
                      role = "aut",
                      email = "yyi@uwaterloo.ca"))
as necessary.
Maintainer: ‘Jessica Weiss <jessica.weiss@uhnresearch.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jessica",
                      family = "Weiss",
                      role = c("aut", "cre"),
                      email = "jessica.weiss@uhnresearch.ca"),
               person(given = "Wei",
                      family = "Xu",
                      role = "aut",
                      email = "Wei.Xu@uhnresearch.ca"))
as necessary.
Maintainer: ‘Silvana M. Pesenti <swimpackage@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Additional functions and data sets
    Amendments to functions
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    pre-release switchboard (2020 - 2021)
Maintainer: ‘Gabriel Becker <gabembecker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriel",
                    family = "Becker",
                    role = c("aut", "cre"),
                    email = "gabembecker@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  import_local_nut.Rd: rem_reps, all_params, all_params_dtrng,
    single_param
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Josef Fruehwald <jofrhwld@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Fruehwald",
                    role = c("aut", "cre"),
                    email = "jofrhwld@gmail.com")
as necessary.
checkRd: (-1) hyph.support.en.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hyph.support.en.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Vinicius Quintas Souto Maior <vinicius@de.ufpe.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vinicius", "Quintas", "Souto"),
                      family = "Maior",
                      role = c("aut", "cre", "cph"),
                      email = "vinicius@de.ufpe.br"),
               person(given = c("Francisco", "Jose", "A"),
                      family = "Cysneiros",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘elliptical.ts.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
  File ‘influence.Rd’:
    https://doi.org/10.1080/03610929308831105
    https://doi.org/10.2307/3109764
    https://doi.org/10.1198/073500104000000217
  File ‘predict.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
  File ‘sym.arma-package.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
checkRd: (-1) elliptical.ts.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{epsilon}{positive convergence tolerance \emph{e}; the iterations converge when |fit - fit_{old}|/|fit| < \emph{e}. Default is \emph{e=1e-04}.}
       |                                                                                                   ^
Maintainer: ‘Alexander Grueneberg <cran@agrueneberg.info>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Blagoje Ivanović <blagoje.ivanovic@matf.bg.ac.rs>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Blagoje",
                    family = "Ivanović",
                    role = c("aut", "cre"),
                    email = "blagoje.ivanovic@matf.bg.ac.rs")
as necessary.
Maintainer: ‘Kem Phillips <kemphillips@comcast.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kem",
                    family = "Phillips",
                    role = c("aut", "cre"),
                    email = "kemphillips@comcast.net")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Grabchak <mgrabcha@uncc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Grabchak",
                      role = c("aut", "cre"),
                      email = "mgrabcha@uncc.edu"),
               person(given = "Lijuan",
                      family = "Cao",
                      role = "aut",
                      email = "lcao2@uncc.edu"))
as necessary.
Maintainer: ‘Tarik C. Gouhier <tarik.gouhier@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tarik", "C."),
                    family = "Gouhier",
                    role = c("aut", "cre"),
                    email = "tarik.gouhier@gmail.com")
as necessary.
checkRd: (-1) coord2dist.Rd:14: Lost braces; missing escapes or markup?
    14 | \code{n} x 4 matrix of coordinates consisting of {lat or y, lon or x} pairs for each each site
       |                                                  ^
Maintainer: ‘Donghoh Kim <donghoh.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matlab", "original", "by", "Eugene", "Brevdo;", "R", "port", "by", "Dongik"),
                      family = "Jang",
                      role = "aut"),
               person(given = "Hee-Seok",
                      family = "Oh",
                      role = "aut"),
               person(given = "Donghoh",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "donghoh.kim@gmail.com"))
as necessary.
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gertjan",
                    family = "van den Burg",
                    role = c("aut", "cre"),
                    email = "gertjanvandenburg@gmail.com")
as necessary.
Maintainer: ‘Vanderlei Julio Debastiani <vanderleidebastiani@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vanderlei", "Julio"),
                    family = "Debastiani",
                    role = c("aut", "cre"),
                    email = "vanderleidebastiani@yahoo.com.br")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cor.matrix.Rd: mantel, mantel.partial, procrustes
  matrix.x.Rd: gowdis
  optimal.Rd: gowdis
  permut.vector.Rd: shuffleSet
  procrustes.syncsa.Rd: procrustes
  rao.diversity.Rd: gowdis
  syncsa.Rd: gowdis, mantel, procrustes, vegdist
  var.type.Rd: gowdis
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  populations <arXiv:2106.06835>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) create_synthetic_example.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) create_synthetic_example.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) create_synthetic_example.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:12: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Alix Lahuec <alix.lahuec@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alix",
                    family = "Lahuec",
                    role = c("aut", "cre"),
                    email = "alix.lahuec@mail.mcgill.ca")
as necessary.
Maintainer: ‘Melantha Wang <wang.melantha@gmail.com>’

The Description field contains
  control" <arXiv:2008.05693>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jens Hainmueller <jhain@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jens",
                      family = "Hainmueller",
                      role = c("aut", "cre"),
                      email = "jhain@stanford.edu"),
               person(given = "Alexis",
                      family = "Diamond",
                      role = "aut",
                      email = "adiamond@fas.harvard.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fn.V.Rd: ipop
  synth.Rd: ipop, optimx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Merlin Kopfmann <mghncd+cran@posteo.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Merlin",
                    family = "Kopfmann",
                    role = c("aut", "cre"),
                    email = "mghncd+cran@posteo.jp")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = c("authors/contributors", "of", "the", "included", "fonts.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Maintainer: ‘Suraj Yerramilli <surajyerramilli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suraj",
                      family = "Yerramilli",
                      role = c("aut", "cre"),
                      email = "surajyerramilli@gmail.com"),
               person(given = "Arun",
                      family = "Tangirala",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘test.csv’
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"),
               person(given = c("Jeff", "D."),
                      family = "Hamann",
                      role = "aut"))
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘T2EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    http://dx.doi.org/10.1177/009286159603000427
  File ‘T2EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘T2EQ.dissolution.profiles.hoffelder.Rd’:
    http://dx.doi.org/10.1177/009286159603000427
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Specified C++11: please drop specification unless essential
Maintainer: ‘Jesus Maria Rodriguez Rodriguez <jesusmro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jesus", "Maria", "Rodríguez"),
                      family = "Rodríguez",
                      role = "aut"),
               person(given = c("Jesus", "Maria", "Rodriguez"),
                      family = "Rodriguez",
                      role = "cre",
                      email = "jesusmro@gmail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bordear.Rd: createStyle
  escribirTabla.Rd: createStyle
  tablaxlsx.estilos.set.Rd: createStyle
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Philip C Schouten <philip.schouten@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "C"),
                    family = "Schouten",
                    role = c("aut", "cre"),
                    email = "philip.schouten@gmail.com")
as necessary.
Maintainer: ‘Alon Kipnis <kipnisal@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alon",
                    family = "Kipnis",
                    role = c("aut", "cre"),
                    email = "kipnisal@stanford.edu")
as necessary.

The Description field contains
  frequency tables described in Kipnis (2019) <arXiv:1911.01208>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tableHTML_output.Rd: uiOutput
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.
checkRd: (-1) tabmulti.Rd:68: Lost braces
    68 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
checkRd: (-1) tabmulti.svy.Rd:67: Lost braces
    67 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Austin Nar <austin.nar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Austin",
                    family = "Nar",
                    role = c("aut", "cre"),
                    email = "austin.nar@gmail.com")
as necessary.
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |   ^
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |                      ^
Maintainer: ‘Katarina Domijan <domijank@tcd.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Katarina",
                    family = "Domijan",
                    role = c("aut", "cre"),
                    email = "domijank@tcd.ie")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Eric Brown <eb@ericebrown.com>’

The BugReports field in DESCRIPTION has
  https://github.com/ropensci/tacmagic
which should likely be
  https://github.com/ropensci/tacmagic/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xyplot.Arima.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  zoom.Rd: print.trellis, Lattice, xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘January Weiner <january.weiner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "January",
                    family = "Weiner",
                    role = c("aut", "cre"),
                    email = "january.weiner@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  smoothPalette.Rd: brewer.pal
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Li-Hsiang Lin <llin79@gatech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Li-Hsiang",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "llin79@gatech.edu"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plott.R’ ‘read_cats_csv.R’
Maintainer: ‘Anna Kiriliouk <anna.kiriliouk@unamur.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anna",
                    family = "Kiriliouk",
                    role = c("aut", "cre"),
                    email = "anna.kiriliouk@unamur.be")
as necessary.
Maintainer: ‘Serena Berretta <serena.berretta@ge.imati.cnr.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Serena",
                      family = "Berretta",
                      role = c("aut", "cre"),
                      email = "serena.berretta@ge.imati.cnr.it"),
               person(given = "Giorgio",
                      family = "Luciano",
                      role = c("aut", "cre")),
               person(given = c("Kristian", "Hovde"),
                      family = "Liland",
                      role = "ctb"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_lines.R’ ‘init.R’ ‘plots.R’ ‘report.R’ ‘tokenize.R’
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de",
                      comment = c(ORCID = "0000-0002-8226-3132")),
               person(given = "Thomas",
                      family = "Kiefer",
                      role = "aut"),
               person(given = "Margaret",
                      family = "Wu",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  IRT.threshold.Rd: IRT.irfprob
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Nanne Aben <nanne.aben@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nanne",
                    family = "Aben",
                    role = c("aut", "cre"),
                    email = "nanne.aben@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ASTBranch.Rd: R6Class
  ASTFunction.Rd: R6Class
  ASTMultiply.Rd: R6Class
  ASTPlus.Rd: R6Class
  ASTTableFormula.Rd: R6Class
  ASTVariable.Rd: R6Class
  Parser.Rd: R6Class
  Token.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alexey Shipunov <dactylorhiza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Shipunov",
                    role = c("aut", "cre"),
                    email = "dactylorhiza@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘auth0.R’ ‘config.R’ ‘entra_id.R’ ‘google.R’ ‘utils.R’
checkRd: (-1) tapnet-package.Rd:40: Escaped LaTeX specials: \&
Maintainer: ‘Fabrizio Cipollini <cipollini.fabrizio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francesco",
                      family = "Calvori",
                      role = "aut"),
               person(given = "Fabrizio",
                      family = "Cipollini",
                      role = c("aut", "cre"),
                      email = "cipollini.fabrizio@gmail.com"),
               person(given = c("Giampiero", "M."),
                      family = "Gallo",
                      role = "aut"),
               person(given = "'gzstream'",
                      family = "authors.",
                      role = "aut"))
as necessary.
checkRd: (-1) TAQ-functions.Rd:119: Lost braces
   119 | Brownlees, C. T., and Gallo, G. M. (2006). Financial Econometric Analysis at Ultra{--}High Frequency: Data Handling Concerns, \emph{Computational Statistics and Data Analysis} \bold{51}, 2232--2245.
       |                                                                                   ^
checkRd: (-1) TAQ-package.Rd:59: Lost braces
    59 | Brownlees, C. T., and Gallo, G. M. (2006). Financial Econometric Analysis at Ultra{--}High Frequency: Data Handling Concerns, \emph{Computational Statistics and Data Analysis} \bold{51}, 2232--2245.
       |                                                                                   ^
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘alean.Rd’ ‘nondom.Rd’
Maintainer: ‘Zehang Li <lizehang@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zehang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lizehang@uw.edu"),
               person(given = "Tyler",
                      family = "McCormick",
                      role = "aut"),
               person(given = "Sam",
                      family = "Clark",
                      role = "aut"))
as necessary.
Maintainer: ‘Hanwen Zhang <hanwengutierrez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanwen",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hanwengutierrez@gmail.com"),
               person(given = c("Fabio", "H."),
                      family = "Nieto",
                      role = "aut"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Yuan-De Tan <tanyuande@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuan-De",
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "tanyuande@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘depreciation_interest.R’ ‘friction_period.R’ ‘nl_med_prices.R’
    ‘nl_pat_fam_prices.R’ ‘nl_ppp.R’ ‘nl_price_index.R’
    ‘nl_prod_oth_prices.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Tagged_table.Rd: data.table
  as.data.table.Mashed_table.Rd: as.data.table, data.table
  as_workbook.Rd: openxlsx
  cmash.Rd: data.table
  write_worksheet.Rd: openxlsx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lukas Burk <lukas@quantenbrot.de>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘parse_schema.R’
Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/cboettig/taxalight
which should likely be
  https://github.com/cboettig/taxalight/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as_data_frame.Rd: as_tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jacques Allard <jacques.allard@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacques",
                      family = "Allard",
                      role = c("aut", "cre"),
                      email = "jacques.allard@gmail.com"),
               person(given = "Vartan",
                      family = "Choulakian",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘TaylorRussell.Rd’
Maintainer: ‘Zhixuan Shao <shaozhixuansh@pku.edu.cn>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sace.Rd’:
    https://doi.org/10.1093/biomet/asx034
  File ‘simulated_data.Rd’:
    https://doi.org/10.1093/biomet/asx034
Maintainer: ‘Guoli Sun <guolisun87@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guoli",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "guolisun87@gmail.com"),
               person(given = "Alex",
                      family = "Krasnitz",
                      role = "aut"))
as necessary.
Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  using the algorithms of Whidden and Matsen (2017) <arxiv:1511.07529>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Elior Rahmani <elior.rahmani@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) tca.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{C1.map}{An \code{p1} by \code{k} matrix of 0/1 values, indicating for each of the \code{p1} covariates in \code{C1} whether to consider its potential effects on the values of each of the \code{k} sources (e.g., if position \code{i,j} in \code{C1.map} is 1 then the potential effect of the \code{i}-th covariate in \code{C1} on the {j}-th source will be considered). If \code{C1.map == NULL} then effects for all covariates in \code{C1} will be considered in each of the sources. Note that \code{C1.map} is available only if \code{constrain_mu == TRUE}.}
       |                                                                                                                                                                                                                                                                                                                                                  ^
Maintainer: ‘Huaiyu Zhang <huaiyuzhang1988@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huaiyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "huaiyuzhang1988@gmail.com"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damiano",
                    family = "Fantini",
                    role = c("aut", "cre"),
                    email = "damiano.fantini@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot1GS.Rd: element_text, +.gg
  plotFit.GS.Rd: +.gg
  plotMultipleGS.Rd: element_text, +.gg
  plotPat.1GS.Rd: element_text, +.gg
  plotSelect.GS.Rd: element_text, +.gg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘tclVarFun.Rd’:
    \concept{ Tcl/Tk variables and proc, function call [TRUNCATED]
  File ‘tk2dialogs.Rd’:
    \concept{ More Tcl/Tk dialog boxes, font and color [TRUNCATED]
  File ‘tk2methods.Rd’:
    \concept{ Tcl/Tk widgets notebook, combobox, paned [TRUNCATED]
  File ‘tk2widgets.Rd’:
    \concept{ Tcl/Tk widgets notebook, combobox, paned [TRUNCATED]
  File ‘unix/tk2dde.Rd’:
    \concept{ Interprocess communication, DDE }
  File ‘unix/tk2ico.Rd’:
    \concept{ icons, windows }
  File ‘unix/tk2reg.Rd’:
    \concept{ Windows registry, keys, hives, permanent [TRUNCATED]
  File ‘windows/tk2dde.Rd’:
    \concept{ Interprocess communication, DDE }
  File ‘windows/tk2ico.Rd’:
    \concept{ icons, windows }
  File ‘windows/tk2reg.Rd’:
    \concept{ Windows registry, keys, hives, permanent [TRUNCATED]
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) windows/tk2reg.Rd:17: Escaped LaTeX specials: \_
checkRd: (-1) windows/tk2reg.Rd:18: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) windows/tk2reg.Rd:51: Escaped LaTeX specials: \_
checkRd: (-1) windows/tk2reg.Rd:52: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:53: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:57: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:58: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:60: Escaped LaTeX specials: \_
Specified C++11: please drop specification unless essential
Maintainer: ‘Raoul Wadhwa <raoulwadhwa@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mobius-strips.Rd’
Maintainer: ‘Guangchuang Yu <guangchuangyu@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Julien",
                      family = "Lavenus",
                      role = "aut"),
               person(given = "Mikael",
                      family = "Lucas",
                      role = "cre",
                      email = "mikael.lucas@ird.fr"))
as necessary.
File ‘tdigest/libs/tdigest.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Maxime Durand <duran1211@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maxime",
                    family = "Durand",
                    role = c("aut", "cre"),
                    email = "duran1211@gmail.com")
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Kenneth",
                      family = "Rose",
                      role = "aut"))
as necessary.
Maintainer: ‘Jing Hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Clayton",
                      role = "aut"),
               person(given = c("Jing", "Hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Maintainer: ‘Greg Snow <538280@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Snow",
                    role = c("aut", "cre"),
                    email = "538280@gmail.com")
as necessary.
Maintainer: ‘Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hugo", "Andres", "Gutierrez"),
                    family = "Rojas",
                    role = c("aut", "cre"),
                    email = "hagutierrezro@gmail.com")
as necessary.
Maintainer: ‘Chris Muir <cdmuir@hawaii.edu>’

Problems when reading CITATION file:
  It is recommended to use ‘given’ instead of ‘middle’.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  action_card.Rd: R6Class
  card_section.Rd: R6Class
  connector_card.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Johannes Ossberger <johannes.ossberger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Ossberger",
                    role = c("aut", "cre"),
                    email = "johannes.ossberger@gmail.com")
as necessary.
Maintainer: ‘Jeffrey L. Andrews <jeff.andrews@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeffrey", "L."),
                      family = "Andrews",
                      role = c("aut", "cre"),
                      email = "jeff.andrews@ubc.ca"),
               person(given = c("Jaymeson", "R."),
                      family = "Wickins",
                      role = "aut"),
               person(given = c("Nicholas", "M."),
                      family = "Boers",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Joshua Hewitt <joshua.hewitt@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "Hewitt",
                    role = c("aut", "cre"),
                    email = "joshua.hewitt@duke.edu")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) sendChatAction.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:25: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Bot.Rd: R6Class
  CallbackQueryHandler.Rd: R6Class
  CommandHandler.Rd: R6Class
  Dispatcher.Rd: R6Class
  ErrorHandler.Rd: R6Class
  Handler.Rd: R6Class
  MessageHandler.Rd: R6Class
  TelegramObject.Rd: R6Class
  Update.Rd: R6Class
  Updater.Rd: R6Class
  Webhook.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Marcos Fernández-Martínez <marcos.fernandez-martinez@uantwerpen.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcos",
                      family = "Fernández-Martínez",
                      role = c("aut", "cre"),
                      email = "marcos.fernandez-martinez@uantwerpen.be"),
               person(given = "Joan",
                      family = "Maspons",
                      role = "aut"))
as necessary.
Maintainer: ‘Christoph Sax <christoph.sax@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/christophsax/tempdisagg
which should likely be
  https://github.com/christophsax/tempdisagg/issues
instead.
Maintainer: ‘Etienne Low-Decarie <etienne.decarie@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: to_be_added
    From: man/Emiliania_huxleyi.Rd
Maintainer: ‘Siddhartha Kundu <siddhartha_kundu@aiims.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Siddhartha",
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "siddhartha_kundu@aiims.edu")
as necessary.
Maintainer: ‘Till Massing <till.massing@uni-due.de>’

The Description field contains
  (Massing (2023) <arXiv:2303.07060>).  The following references form the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pixu Shi <pixu.shi@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pixu",
                    family = "Shi",
                    role = c("aut", "cre"),
                    email = "pixu.shi@duke.edu")
as necessary.
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘K. Gerald van den Boogaart <boogaart@math.tu-freiberg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("K.", "Gerald"),
                    family = "van den Boogaart",
                    role = c("aut", "cre"),
                    email = "boogaart@uni-greifswald.de")
as necessary.
Maintainer: ‘Suleiman A Khan <khan.suleiman@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  parse_arguments.Rd: yaml.load
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Weilin Chen <w.chen56@lse.ac.uk>’

The Description field contains
  projected data.  See Chen and Lam (2023) <arXiv:2208.04012> for more
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jonathan Rougier <j.c.rougier@bristol.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Rougier",
                    role = c("aut", "cre"),
                    email = "j.c.rougier@bristol.ac.uk")
as necessary.

The Date field is not in ISO 8601 yyyy-mm-dd format.
Maintainer: ‘Yuchen Zeng <yzeng58@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miaoyan",
                      family = "Wang",
                      role = "aut"),
               person(given = "Yuchen",
                      family = "Zeng",
                      role = c("aut", "cre"),
                      email = "yzeng58@wisc.edu"))
as necessary.
Maintainer: ‘David Gerard <gerard.1787@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Kom.Rd’:
    http://doi.org/10.1214/aos/1176344621
    http://doi.org/10.1080/01621459.1969.10501078
  File ‘amprod.Rd’:
    https://doi.org/10.1137/07070111X
  File ‘anorm_cd.Rd’:
    http://doi.org/10.1214/11-BA606
  File ‘atrans.Rd’:
    https://doi.org/10.1137/07070111X
  File ‘convert_cov.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘demean_tensor.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘equi_mcmc.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘get_equi_bayes.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘get_isvd.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘holq.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘hooi.Rd’:
    https://doi.org/10.1137/S0895479898346995
    http://doi.org/10.1137/S0895479898346995
  File ‘hosvd.Rd’:
    https://doi.org/10.1137/S0895479896305696
    http://doi.org/10.1137/S0895479896305696
  File ‘ihop.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘lrt_null_dist_dim_same.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘lrt_stat.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘mat.Rd’:
    https://doi.org/10.1137/07070111X
  File ‘mle_from_holq.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘multi_stein_loss.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘multi_stein_loss_cov.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘multiway_takemura.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘rmirror_wishart.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘sample_right_wishart.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘sample_sig.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘tensr.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
    https://doi.org/10.1016/j.laa.2016.04.033
Maintainer: ‘M. Suzette Blanchard <sblanchard@coh.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("M.", "Suzette"),
                    family = "Blanchard",
                    role = c("aut", "cre"),
                    email = "sblanchard@coh.org")
as necessary.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘georeference_overlay.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_spatial_rgb.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) MC_CRUDE.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{lsf}{objective function with limit state function in form of function(x) {x[1]+x[2]...}}
       |                                                                                ^
checkRd: (-1) MC_IS.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{lsf}{objective function with limit state function in form of function(x) {x[1]+x[2]...}}
       |                                                                                ^
checkRd: (-1) PROB_BASEVAR-class.Rd:14: Lost braces
    14 | \item{\code{Id}}{Place in vector of objective functional expression function(x){x[id]}}
       |                                                                                ^
checkRd: (-1) PROB_DETVAR-class.Rd:14: Lost braces
    14 | \item{\code{Id}}{Place in vector of objective functional expression function(x){x[id]}}
       |                                                                                ^
checkRd: (-1) SORM.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{lsf}{objective function with limit state function in form of function(x) {x[1]+x[2]...}}
       |                                                                                ^
checkRd: (-1) SYS_LSF-class.Rd:16: Lost braces
    16 | \item{\code{func}}{prepared for objective functions like SYS_LSF$func <- function(x){return(x[1] + x[2])}}
       |                                                                                     ^
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Maintainer: ‘Sebastian Hoehna <Sebastian.Hoehna@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastian",
                      family = "Hoehna",
                      role = c("aut", "cre"),
                      email = "sebastian.hoehna@gmail.com"),
               person(given = c("Michael", "R."),
                      family = "May",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cettiidae.Rd: read.tree, ape
  conifers.Rd: read.tree, ape
  mammalia.Rd: read.tree, ape
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Anya Umlauf <aumlauf@health.ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anya",
                    family = "Umlauf",
                    role = c("aut", "cre"),
                    email = "aumlauf@health.ucsd.edu")
as necessary.
Non-standard license specification:
  CPL (>= 2)
Standardizable: FALSE
Maintainer: ‘Michael C Sachs <sachsmc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "C"),
                      family = "Sachs",
                      role = c("aut", "cre"),
                      email = "sachsmc@gmail.com"),
               person(given = c("Michael", "P"),
                      family = "Fay",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) lognormConstCVCI.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lognormConstCVCI.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lognormConstCVCI.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Gannaz Irene <irene.gannaz@insa-lyon.fr>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘TestCor-package.Rd’:
    https://doi.org/10.1111/j.2517-6161.1995.tb02031.x
    https://doi.org/10.1080/01621459.2014.999157
    https://doi.org/10.1214/088342307000000113
    https://doi.org/10.1198/016214504000000539
Maintainer: ‘Violetta Dalla <vidalla@econ.uoa.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Violetta",
                      family = "Dalla",
                      role = c("aut", "cre"),
                      email = "vidalla@econ.uoa.gr"),
               person(given = "Liudas",
                      family = "Giraitis",
                      role = "aut"),
               person(given = c("Peter", "C.", "B."),
                      family = "Phillips",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  chk-defunct.Rd: dplyr_tidy_select
  expect-defunct.Rd: dplyr_tidy_select
  output_results_excel.Rd: test_dir, test_file
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Dexter Cahoy <dexter.cahoy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dexter",
                    family = "Cahoy",
                    role = c("aut", "cre"),
                    email = "dexter.cahoy@gmail.com")
as necessary.
Maintainer: ‘En-shuo Hsu <daviden1013@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeffrey", "C."),
                      family = "Miecznikowski",
                      role = "aut"),
               person(given = "En-shuo",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "daviden1013@gmail.com"),
               person(given = "Yanhua",
                      family = "Chen",
                      role = "aut"),
               person(given = "Albert",
                      family = "Vexler",
                      role = "aut"))
as necessary.
Maintainer: ‘Kathrin Moellenhoff <kathrin.moellenhoff@rub.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kathrin",
                    family = "Moellenhoff",
                    role = c("aut", "cre"),
                    email = "kathrin.moellenhoff@rub.de")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘bootstrap_test.Rd’:
    https://doi.org/10.1080/01621459.2017.1281813
Maintainer: ‘Manel Salamero <manelsalamero@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manel",
                    family = "Salamero",
                    role = c("aut", "cre"),
                    email = "manelsalamero@gmail.com")
as necessary.
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
File ‘testthat/libs/testthat.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘FORMALS’, ‘SET_BODY’,
    ‘SET_CLOENV’, ‘SET_FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘vincent guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "vincent",
                    family = "guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Maintainer: ‘Juan Domingo Gonzalez <juanrst@hotmail.com>’

The Description field contains
  objects of arbitrary geometries. arXiv preprint <arXiv:2312.16721>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) permucycle.Rd:37: Lost braces; missing escapes or markup?
    37 |  {The 2 in the first row means there are two cycles;}
       |  ^
checkRd: (-1) permucycle.Rd:38: Lost braces; missing escapes or markup?
    38 |   {The second row means there is a cycle of length 2, with members  (1,3);}
       |   ^
checkRd: (-1) permucycle.Rd:39: Lost braces; missing escapes or markup?
    39 |  {The third row means  there is a cycle of length 1, with member  (2);}
       |  ^
checkRd: (-1) permucycle.Rd:40: Lost braces; missing escapes or markup?
    40 |  {The fourth row is redundant for this specific case.}
       |  ^
checkRd: (-1) permucycle.Rd:41: Lost braces; missing escapes or markup?
    41 |  {One can read from the output of permucycle() to obtain cycle notation (13)(2) of the permutation, and other information.}
       |  ^
Maintainer: ‘Alejandro Gonzalez Recuenco <alejandrogonzalezrecuenco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alejandro", "Gonzalez"),
                    family = "Recuenco",
                    role = c("aut", "cre"),
                    email = "alejandrogonzalezrecuenco@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tex_preview.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dtm_builder.Rd’ ‘dtm_stopper.Rd’ ‘rancor_builder.Rd’
    ‘rancors_builder.Rd’ ‘utils-perm.R’
Maintainer: ‘Dominik S. Meier <dominikmeier@outlook.com>’

The Description field contains
  'text2sdg' package. See Wulff, Meier and Mata (2023) <arXiv:2301.11353>
  and Meier, Wulff and Mata (2021) <arXiv:2110.05856> for reference.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dominik S. Meier <dominikmeier@outlook.com>’

The Description field contains
  <arXiv:2110.05856>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_sdg.Rd: color
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tts_speak_engine.Rd: knit_engines
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BNS.Rd: R6Class
  Collocations.Rd: R6Class
  LatentDirichletAllocation.Rd: R6Class
  LatentSemanticAnalysis.Rd: R6Class
  RelaxedWordMoversDistance.Rd: R6Class
  TfIdf.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Christian Fong <christianfong@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Fong",
                    role = c("aut", "cre"),
                    email = "christianfong@stanford.edu")
as necessary.
checkRd: (-1) infer_Z.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{nu}{Informally, the probability that the row document has the column treatment.  Formally, the parameter for the variatioanl approximation of z_{i,k}, which is a Bernoulli distribution.}
       |                                                                                                                                                         ^
checkRd: (-1) sibp.Rd:26: Lost braces
    26 | It is recommended to use link{sibp_param_search} instead of this function to search over multiple configurations of the most important parameters.  So long as only the training data is used, the analyst can freely experimient with as many parameter configurations as he likes without corrupting his causal inferences.  Once a parameter configuration is chosen, the user can then use \link{sibp_amce} on the test set to estimate the average marginal component effect (AMCE) for each treatment.}
       |                              ^
checkRd: (-1) sibp.Rd:28: Lost braces; missing escapes or markup?
    28 |   \item{nu}{Informally, the probability that the row document has the column treatment.  Formally, the parameter for the variational approximation of z_{i,k}, which is a Bernoulli distribution.}
       |                                                                                                                                                         ^
checkRd: (-1) sibp_amce.Rd:19: Lost braces
    19 |   \item{sibp.amce}{The table returned by code{sibp_amce}.}
       |                                              ^
Maintainer: ‘Patrick Reidy <patrick.francis.reidy@gmail.com>’

The URL field contains the following bad parts:
  www.praat.org
The URL field should be a list of URLs separated by commas or
whitespace.

The BugReports field in DESCRIPTION has
  https://github.com/patrickreidy/textgRid
which should likely be
  https://github.com/patrickreidy/textgRid/issues
instead.
Maintainer: ‘Anh Bui <atbui@u.northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anh",
                      family = "Bui",
                      role = c("aut", "cre"),
                      email = "atbui@u.northwestern.edu"),
               person(given = "Daniel",
                      family = "Apley",
                      role = "ths"))
as necessary.

Problems when reading CITATION file:
  It is recommended to use ‘given’ instead of ‘middle’.
Maintainer: ‘Matt Taddy <mataddy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Taddy",
                    role = c("aut", "cre"),
                    email = "mataddy@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Inverse Regression for Text Analysis <arXiv:1012.2098> and Taddy (2015,
  AoAS), Distributed Multinomial Regression, <arXiv:1311.6139>. A
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘congress109.Rd’:
    http://dx.doi.org/10.3886/ICPSR26242
Specified C++11: please drop specification unless essential
Maintainer: ‘Matthieu Decorde <matthieu.decorde@ens-lyon.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sylvain",
                      family = "Loiseau",
                      role = "aut"),
               person(given = "Lise",
                      family = "Vaudor",
                      role = "aut"),
               person(given = "Matthieu",
                      family = "Decorde",
                      role = c("aut", "cre"),
                      email = "matthieu.decorde@ens-lyon.fr"),
               person(given = "Serge",
                      family = "Heiden",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nlp_build_chunks.R’ ‘sem_search_corpus.R’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘textra.R’
Maintainer: ‘Luke Miratrix <lmiratrix@stat.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luke",
                    family = "Miratrix",
                    role = c("aut", "cre"),
                    email = "lmiratrix@stat.harvard.edu")
as necessary.
checkRd: (-1) make.phrase.matrix.Rd:20: Lost braces
    20 |  \\tabular{rrrrr}{
       |           ^
checkRd: (-1) make.phrase.matrix.Rd:20-23: Lost braces
    20 |  \\tabular{rrrrr}{
       |                  ^
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘James Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Curran",
                      role = c("aut", "cre"),
                      email = "j.curran@auckland.ac.nz"),
               person(given = "TingYu",
                      family = "Huang",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  feature_columns.Rd: tidyselect
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Zheyang",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Ge Tan <ge_tan@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ge",
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "ge_tan@live.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  addDate.Rd: tfExpand
  tfplot.Rd: tfprint, tframe, tframed
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) tfd_von_mises_fisher.Rd:63: Lost braces; missing escapes or markup?
    63 | NOTE: Currently only n in {2, 3, 4, 5} are supported. For n=5 some numerical
       |                           ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  initializer_blockwise.Rd: initializer_constant
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mock_tbl.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  flags.Rd: yaml.load
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) predict.tfunHDDC.Rd:31-39: Lost braces
    31 | The teigen family. Stat Comput 22:1021{1029. <doi.org/10.1007/
       |                                       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tfunHDDC.Rd: tkmeans
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tgstat/libs/tgstat.so’:
  Found non-API call to R: ‘Rf_GetOption’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  thaipdf_document.Rd: pdf_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Nicholas J. Irons <nicholasjonirons@gmail.com>’

The Description field contains
  Perrot-Dockès, Ouadah, Irons, & Raftery (2023) <arXiv:2305.08952>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) shoulders.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) shoulders.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) shoulders.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
'library' or 'require' calls not declared from:
  ‘dplyr’ ‘openxlsx’ ‘plyr’
Maintainer: ‘Glenn J. Tattersall <gtatters@brocku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Glenn", "J."),
                    family = "Tattersall",
                    role = c("aut", "cre"),
                    email = "gtatters@brocku.ca")
as necessary.
Maintainer: ‘Francisco Jablinski Castelhano <fjcastelhano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Francisco", "Jablinski", "Castelhano/Laboclima", "-", "Universidade", "Federal", "do"),
                      family = "Paraná",
                      role = "aut"),
               person(given = c("Francisco", "Jablinski"),
                      family = "Castelhano",
                      role = "cre",
                      email = "fjcastelhano@gmail.com"))
as necessary.
Maintainer: ‘Jose Gama <rxprtgama@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: www.madur.com
    From: man/RTDtemperatureFromResistance.Rd
  URI: www.betatherm.com
    From: man/ThermistorSlope.Rd
  URI: www.betatherm.com
    From: man/ThermistorSteinhartHartCoeffFromMeasurements.Rd
  URI: www.betatherm.com
    From: man/ThermistorVolumeResistivityFromR25.Rd
  URI: www.betatherm.com
    From: man/ThermistorVolumeResistivityFromRho.Rd
  URI: www.conaxbuffalo.com
    From: man/ThermocoupleLeadWireExternalResistanceUS.Rd
  URI: www.madur.com
    From: man/rtdResistivityAlpha.Rd
  URI: www.phoenixcontact.com
    From: man/thermocoupleExtensionCables.Rd
  URI: www.tempco.com
    From: man/thermocoupleWireColorUnitedStatesCanadaMexico.Rd
  URI: www.conaxbuffalo.com
    From: man/thermocoupleWireSizeResistanceImperial.Rd
Maintainer: ‘Amit Sasson <amitsasson1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Amit",
                    family = "Sasson",
                    role = c("aut", "cre"),
                    email = "amitsasson1@gmail.com")
as necessary.
Maintainer: ‘Olgun Aydin <olgun.aydin@pg.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olgun",
                      family = "Aydin",
                      role = c("aut", "cre"),
                      email = "olgun.aydin@pg.edu.pl"),
               person(given = "Mustafa",
                      family = "Cavus",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffmann",
                    role = c("aut", "cre"),
                    email = "tjhoffm@gmail.com")
as necessary.
Maintainer: ‘Holger L. Kern <hkern@fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Holger", "L."),
                    family = "Kern",
                    role = c("aut", "cre"),
                    email = "hkern@fsu.edu")
as necessary.
Maintainer: ‘Paolo Giordani <paolo.giordani@uniroma1.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maria", "Antonietta", "Del"),
                      family = "Ferraro",
                      role = "aut"),
               person(given = c("Henk", "A.L."),
                      family = "Kiers",
                      role = "aut"),
               person(given = "Paolo",
                      family = "Giordani",
                      role = c("aut", "cre"),
                      email = "paolo.giordani@uniroma1.it"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) CPdimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) CPdimensionalityplot.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) T2func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T2funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3dimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:26: Escaped LaTeX specials: \& \& \&
checkRd: (-1) TV.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) pcamean.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) threewayanova.Rd:24: Escaped LaTeX specials: \&
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md

The Description field contains
  A connector to the 'What3Words' (http://what3words.com/) service, which
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Man-Hua Chen <mchen@mail.tku.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Man-Hua",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "mchen@mail.tku.edu.tw")
as necessary.
Maintainer: ‘Tao Xiao <taoxiao1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tao",
                    family = "Xiao",
                    role = c("aut", "cre"),
                    email = "taoxiao1@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TBinaryProtocol.Rd: R6Class
  TBinaryProtocolFactory.Rd: R6Class
  TBufferedTransport.Rd: R6Class
  TBufferedTransportFactory.Rd: R6Class
  TClient.Rd: R6Class
  TMemoryBuffer.Rd: R6Class
  TPayload.Rd: R6Class
  TServerSocket.Rd: R6Class
  TSocket.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  deprecated.Rd: quasiquotation
  formatting.Rd: tbl_format_setup
  frame_matrix.Rd: !!, !!!, quasiquotation
  lst.Rd: !!, !!!, .data, .env
  subsetting.Rd: vec_slice
  tibble.Rd: !!, !!!, .data, .env, quasiquotation
  tribble.Rd: !!, !!!, quasiquotation
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tibble/libs/tibble.so’:
  Found non-API calls to R: ‘IS_S4_OBJECT’, ‘OBJECT’, ‘SET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  guess_tspec.Rd: abort
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tibblify/libs/tibblify.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘OBJECT’, ‘PRENV’,
    ‘PRVALUE’, ‘R_PromiseExpr’, ‘Rf_allocSExp’, ‘Rf_findVarInFrame3’,
    ‘SETLENGTH’, ‘SET_BODY’, ‘SET_CLOENV’, ‘SET_FORMALS’,
    ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Sergei Izrailev <sizrailev@jabiruventures.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergei",
                    family = "Izrailev",
                    role = c("aut", "cre"),
                    email = "sizrailev@jabiruventures.com")
as necessary.
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alec",
                      family = "Stephenson.",
                      role = "aut"),
               person(given = "Alec",
                      family = "Stephenson",
                      role = "cre",
                      email = "alec_stephenson@hotmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tom Cox <tom.cox@uantwerp.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tom",
                      family = "Cox",
                      role = c("aut", "cre"),
                      email = "tom.cox@uantwerp.be"),
               person(given = "Lennert",
                      family = "Schepers",
                      role = "aut",
                      email = "lennert.schepers@uantwerp.be"))
as necessary.
Maintainer: ‘Moritz Mueller-Navarra <muellernavarra@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BuildTT.Rd’:
    https://doi.org/10.5194/os-15-1363-2019
  File ‘SynTT.Rd’:
    https://doi.org/10.5194/os-15-1363-2019
  File ‘TideTable.Rd’:
    https://doi.org/10.5194/os-15-1363-2019
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  design_gray.Rd: ggplot2
  design_grey.Rd: ggplot2
  design_lmu.Rd: ggplot2
  new_tdcmm.Rd: tibble
  visualize.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tidy_inverse_normal.Rd: rinvgauss
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Author field differs from that derived from Authors@R
  Author:    ‘Tyson Barrett [aut, cre] (<https://orcid.org/0000-0002-2137-1391>), Mark Fairbanks [ctb], Ivan Leung [ctb], Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
  Authors@R: ‘Tyson Barrett [aut, cre] (ORCID: <https://orcid.org/0000-0002-2137-1391>), Mark Fairbanks [ctb], Ivan Leung [ctb], Indrajeet Patil [ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘functions_chr_int.R’ ‘gate.Rd’ ‘gate_app.R’ ‘methods.R’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Initial Release (v0.1.0)
Maintainer: ‘Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "Myles"),
                    family = "McDonnell",
                    role = c("aut", "cre"),
                    email = "robertmylesmcdonnell@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iterate.Rd’ ‘random_walk_rank.Rd’
Maintainer: ‘Drew Dimmery <drew.dimmery@univie.ac.at>’

The Description field contains
  doubly-robust learner of Kennedy (n.d.) <arXiv:2004.14497>. You provide
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  predict.SL.glmnet.interaction.Rd: SL.glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_paras.Rd’ ‘checks.R’ ‘compute-idx.Rd’ ‘compute-indexes.R’
    ‘dimension-reduction.R’ ‘dimension-reduction.Rd’ ‘dist-fit.Rd’
    ‘distribution-fit.R’ ‘drought-idx.Rd’ ‘drought-indexes.R’ ‘init.R’
    ‘normalise.R’ ‘normalise.Rd’ ‘rescale.Rd’ ‘rescaling.R’
    ‘swap-values.R’ ‘swap.Rd’ ‘temporal-aggregate.Rd’
    ‘temporal-aggregation.R’ ‘theme_benchmark.Rd’
    ‘variable-transformation.R’ ‘variable-transformation.Rd’
'::' or ':::' imports not declared from:
  ‘here’ ‘janitor’ ‘ozmaps’ ‘readxl’ ‘rmapshaper’ ‘sf’ ‘tibble’
'library' or 'require' calls not declared from:
  ‘GGally’ ‘ozmaps’ ‘tidyverse’
checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
       |                    ^
checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
       |                                           ^
checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
       |                                                          ^
Maintainer: ‘Joshua M Rosenberg <jmrosenberg@utk.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Minor changes:
checkRd: (-1) single_imputation.Rd:21-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) single_imputation.Rd:23-27: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.mc.Rd: ggplot2
  plot.summary.mc.Rd: ggplot2
  tidy_mc_latex.Rd: kableExtra
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tidymodl.R’ ‘tidymodl.Rd’
Maintainer: ‘Michael Milton <michael.r.milton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Milton",
                    role = c("aut", "cre"),
                    email = "michael.r.milton@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tidy_plate.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘summarise2.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_msg_to_chat_history.Rd’ ‘add_text.Rd’ ‘answer_as_key_value.R’
    ‘answer_as_named_list.R’ ‘answer_as_text.R’ ‘answer_using_sql.R’
    ‘answer_using_tools.R’ ‘chat_history.R’ ‘chat_history.Rd’
    ‘construct_prompt_text.Rd’ ‘df_to_string.Rd’ ‘get_chat_history.Rd’
    ‘get_prompt_wraps.Rd’ ‘internal_extraction.R’
    ‘internal_request_llm_provider.R’ ‘internal_test_helpers.R’
    ‘is_tidyprompt.Rd’ ‘llm_provider-class.Rd’ ‘llm_providers.R’
    ‘misc_llm_verify.R’ ‘persistent_chat.R’ ‘prompt_wrap.Rd’
    ‘send_prompt.R’ ‘set_chat_history.Rd’ ‘set_system_prompt.Rd’
    ‘skim_with_labels_and_levels.Rd’ ‘tidyprompt-class.Rd’ ‘tidyprompt.R’
    ‘tidyprompt.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘import_instruments.R’ ‘make_choose_all_table.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  group_by.Rd: group_by_drop_default
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tidyr/libs/tidyr.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  formatting.Rd: tbl_format_setup
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cast_sparse.Rd: sparseMatrix
  document_term_casters.Rd: sparseMatrix
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  are_true.Rd: as_logical
  categorical_test_by.Rd: map_dfr
  count_by.Rd: count
  first_non_nas_at.Rd: select
  first_which_non_na_at.Rd: select
  format_numbers_at.Rd: mutate_at
  format_p_values_at.Rd: mutate_at
  lump_rows.Rd: summarise
  order_factor_by.Rd: fct_reorder
  pluck_vector.Rd: pluck, simplify
  rename_factor.Rd: fct_recode, fct_relevel
  rename_reorder_factor.Rd: fct_recode, fct_relevel
  with_name.Rd: pluck, str_detect
  with_value_containing.Rd: pluck, str_detect
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tw_search.R’
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Kent",
                      family = "Johnson",
                      role = "ctb",
                      email = "kjohnson@akoyabio.com"))
as necessary.
Maintainer: ‘Will Kuan <aiien61will@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Will",
                    family = "Kuan",
                    role = c("aut", "cre"),
                    email = "aiien61will@gmail.com")
as necessary.
Maintainer: ‘Siyu Han <siyu.han@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siyu",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "siyu.han@helmholtz-muenchen.de"),
               person(given = "Jialing",
                      family = "Huang",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Foppiano",
                      role = "aut"),
               person(given = "Cornelia",
                      family = "Prehn",
                      role = "aut"),
               person(given = "Jerzy",
                      family = "Adamski",
                      role = "aut"),
               person(given = "Karsten",
                      family = "Suhre",
                      role = "aut"),
               person(given = "Ying",
                      family = "Li",
                      role = "aut"),
               person(given = "Giuseppe",
                      family = "Matullo",
                      role = "aut"),
               person(given = "Freimut",
                      family = "Schliess",
                      role = "aut"),
               person(given = "Christian",
                      family = "Gieger",
                      role = "aut"),
               person(given = "Annette",
                      family = "Peters",
                      role = "aut"),
               person(given = "Rui",
                      family = "Wang-Sattler",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chi Song <song.1188@osu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("George", "C."),
                      family = "Tseng",
                      role = "aut",
                      email = "ctseng@pitt.edu"),
               person(given = c("Wing", "H."),
                      family = "Wong",
                      role = "aut",
                      email = "whwong@stanford.edu"),
               person(given = "Chi",
                      family = "Song",
                      role = "cre",
                      email = "song.1188@osu.edu"))
as necessary.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"),
               person(given = "Kaisey",
                      family = "Mandel",
                      role = "aut"),
               person(given = c("David", "A."),
                      family = "van Dyk",
                      role = "aut"),
               person(given = c("Vinay", "L."),
                      family = "Kashyap",
                      role = "aut"),
               person(given = "Xiao-Li",
                      family = "Meng",
                      role = "aut"),
               person(given = "Aneta",
                      family = "Siemiginowska",
                      role = "aut"),
               person(given = "Zhirui",
                      family = "Hu",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:2005.08049>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Maintainer: ‘Toshihiro Umehara <toshi@niceume.com>’

The BugReports field in DESCRIPTION has
  https://github.com/niceume/timeDF
which should likely be
  https://github.com/niceume/timeDF/issues
instead.
Maintainer: ‘Dahee Lee <dhlee99@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dahee",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "dhlee99@gmail.com"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘life_exp.Rd’:
    \keyword{durPlot,}
    \keyword{durSummary,}
Maintainer: ‘Paul Blanche <paulfblanche@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Blanche",
                    role = c("aut", "cre"),
                    email = "paulfblanche@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) compare.Rd:46: Escaped LaTeX specials: \&
Maintainer: ‘Yifu Yan <yanyifu94@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yifu",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "yanyifu94@hotmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) setup_sql_functions.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Install {timeseriesdb} System Functions}
       |                ^
checkRd: (-1) setup_sql_functions.Rd:17: Lost braces; missing escapes or markup?
    17 | Installs functions needed to operated {timeseriesdb} in
       |                                       ^
checkRd: (-1) setup_sql_grant_rights.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Grant execute on {timeseriesdb} functions}
       |                         ^
checkRd: (-1) setup_sql_grant_rights.Rd:17: Lost braces; missing escapes or markup?
    17 | Grant execute on {timeseriesdb} functions
       |                  ^
checkRd: (-1) setup_sql_tables.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Install {timeseriesdb} System Tables}
       |                ^
checkRd: (-1) setup_sql_tables.Rd:17: Lost braces; missing escapes or markup?
    17 | Installs tables needed to operated {timeseriesdb} in
       |                                    ^
checkRd: (-1) setup_sql_triggers.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Install {timeseriesdb} Triggers}
       |                ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_weekly_timeslots.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_weekly_timeslots.Rd: layer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  parse_date2.Rd: anytime, anydate
  step_box_cox.Rd: selections
  step_diff.Rd: step_naomit, selections
  step_log_interval.Rd: selections
  step_ts_clean.Rd: selections
  step_ts_impute.Rd: selections
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tcor.Rd’
checkRd: (-1) alcohol.Rd:16-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) alcohol.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) alcohol.Rd:22-26: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Joris Snellenburg <j.snellenburg@vu.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Masami Saga <msaga@mtb.biglobe.ne.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("The", "Institute", "of", "Statistical"),
                      family = "Mathematics",
                      role = "aut"),
               person(given = "Masami",
                      family = "Saga",
                      role = "cre",
                      email = "msaga@mtb.biglobe.ne.jp"))
as necessary.
Maintainer: ‘Josef Leydold <josef.leydold@wu.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Josef",
                      family = "Leydold",
                      role = c("aut", "cre"),
                      email = "josef.leydold@wu.ac.at"),
               person(given = "Carsten",
                      family = "Botts",
                      role = "aut"),
               person(given = "Wolfgang",
                      family = "H\\\"ormann",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘base-lenses.R’ ‘where_il.Rd’
Maintainer: ‘Francois Guillem <guillem.francois@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Guillem",
                    role = c("aut", "cre"),
                    email = "guillem.francois@gmail.com")
as necessary.
Maintainer: ‘Camilo Khatchikian <ckhatchikian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrien",
                      family = "Rieux",
                      role = "aut"),
               person(given = "Camilo",
                      family = "Khatchikian",
                      role = c("aut", "cre"),
                      email = "ckhatchikian@gmail.com"))
as necessary.
Specified C++14: please drop specification unless essential
checkRd: (-1) partition_undirected_graph.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{cutoff}{Numeric. The value max(0, g_{i,j} - cutoff) so that there are <\code{.num_components}> components in the graph.}
       |                                           ^
Maintainer: ‘Brian Salzer <brian.m.salzer@frb.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Hallman",
                      role = "aut",
                      email = "jeffhallman@gmail.com"),
               person(given = "Brian",
                      family = "Salzer",
                      role = "cre",
                      email = "brian.m.salzer@frb.gov"))
as necessary.
checkRd: (-1) tierChart.Rd:332: Lost braces
   332 |   If the input argument code{boxes} is \code{F}, the \code{lBox},
       |                             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_taxa_ridges.Rd: scale_fill_gradient, theme_ridges,
    geom_density_ridges
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luke",
                    family = "Tierney",
                    role = c("aut", "cre"),
                    email = "luke-tierney@uiowa.edu")
as necessary.
Found an obsolete/platform-specific call in the following function:
  ‘.my.tkdev’
Found the platform-specific device:
  ‘X11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
Maintainer: ‘Filipe Campelo <fcampelo@ci.uc.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Filipe",
                    family = "Campelo",
                    role = c("aut", "cre"),
                    email = "fcampelo@ci.uc.pt")
as necessary.
Maintainer: ‘Jasin Machkour <jasin.machkour@tu-darmstadt.de>’

The Description field contains
  Machkour, Muma, and Palomar (2022) <arXiv:2110.06048>, Efron, Hastie,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiang Lyu <xianglyu@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiang",
                      family = "Lyu",
                      role = c("aut", "cre"),
                      email = "xianglyu@berkeley.edu"),
               person(given = c("Will", "Wei"),
                      family = "Sun",
                      role = "aut"),
               person(given = "Zhaoran",
                      family = "Wang",
                      role = "aut"),
               person(given = "Han",
                      family = "Liu",
                      role = "aut"),
               person(given = "Jian",
                      family = "Yang",
                      role = "aut"),
               person(given = "Guang",
                      family = "Cheng",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Tlasso.fit.Rd: huge
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Author field differs from that derived from Authors@R
  Author:    ‘Lukas Soenning [aut, cre, cph] (<https://orcid.org/0000-0002-2705-395X>), German Research Foundation (DFG) [fnd] (018mejw64, Grant number 548274092)’
  Authors@R: ‘Lukas Soenning [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-2705-395X>), German Research Foundation (DFG) [fnd] (ROR: <https://ror.org/018mejw64>, Grant number 548274092)’
Maintainer: ‘Jona Lilienthal <lilienthal@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jona",
                    family = "Lilienthal",
                    role = c("aut", "cre"),
                    email = "lilienthal@statistik.tu-dortmund.de")
as necessary.
Specified C++14: please drop specification unless essential
checkRd: (-1) pmvn.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvn.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvn.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvt.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvt.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvt.Rd:25: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Muhammed Ali Onder <muhammedalionder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Muhammed", "Ali"),
                    family = "Onder",
                    role = c("aut", "cre"),
                    email = "muhammedalionder@gmail.com")
as necessary.
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kasper",
                    family = "Kristensen",
                    role = c("aut", "cre"),
                    email = "kaskr@dtu.dk")
as necessary.
Maintainer: ‘Junhui Li <junhuili@cau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junhui",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "junhuili@cau.edu.cn")
as necessary.
Maintainer: ‘Jian Li <rweibo@sina.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jian",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "rweibo@sina.com")
as necessary.
Maintainer: ‘Andrea Capozio <andreacapozio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Capozio",
                    role = c("aut", "cre"),
                    email = "andreacapozio@gmail.com")
as necessary.
checkRd: (-1) tv_episode_changes.Rd:29: Lost braces; missing escapes or markup?
    29 | This method is used in conjunction with the /tv/{id}/changes method. This method uses the episode_id value found in the change entries.
       |                                                 ^
checkRd: (-1) tv_season_changes.Rd:29: Lost braces; missing escapes or markup?
    29 | This method is used in conjunction with the /tv/{id}/changes method. This method uses the season_id value found in the change entries.
       |                                                 ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tmle.Sl.dbarts2.Rd: SuperLearner
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) pvalEffectPlot.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:93: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:94: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Stefan Theussl <Stefan.Theussl@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Cody Moore <Jumper9400@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cody",
                    family = "Moore",
                    role = c("aut", "cre"),
                    email = "jumper9400@gmail.com")
as necessary.
Maintainer: ‘Samsiddhi Bhattacharjee <sb1@nibmg.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Samsiddhi",
                      family = "Bhattacjarjee",
                      role = "aut",
                      email = "sb1@nibmg.ac.in"),
               person(given = "Samsiddhi",
                      family = "Bhattacharjee",
                      role = "cre",
                      email = "sb1@nibmg.ac.in"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gmm.tmvnorm.Rd: gmm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘rgl’
Maintainer: ‘Kaifeng Lu <kaifenglu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kaifeng",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "kaifenglu@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Tore Opsahl <tore@opsahl.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tore",
                    family = "Opsahl",
                    role = c("aut", "cre"),
                    email = "tore@opsahl.co.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘position_diverge.R’
Maintainer: ‘Ali Santacruz <amsantac@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robert", "G."),
                      family = "Pontius",
                      role = "aut",
                      email = "rpontius@clarku.edu"),
               person(given = "Ali",
                      family = "Santacruz",
                      role = c("aut", "cre"),
                      email = "amsantac@unal.edu.co"),
               person(given = "Amin",
                      family = "Tayyebi",
                      role = "aut"),
               person(given = "Benoit",
                      family = "Parmentier",
                      role = "aut"),
               person(given = "Kangping",
                      family = "Si",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Get_time_entries.R’
Maintainer: ‘Sara Algeri <salgeri@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sara",
                    family = "Algeri",
                    role = c("aut", "cre"),
                    email = "salgeri@umn.edu")
as necessary.

The Description field contains
  <arXiv:1803.03858>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kasper",
                      family = "Welbers",
                      role = c("aut", "cre"),
                      email = "kasperwelbers@gmail.com"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Lincoln Mullen <lincoln@lincolnmullen.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Abedrahim Ben rebia <b.abedrahim@tomba.io>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Abedrahim", "Ben"),
                      family = "rebia",
                      role = c("ctb", "aut", "cre"),
                      email = "b.abedrahim@tomba.io"),
               person(family = "Tomba.io",
                      role = c("cph", "aut")))
as necessary.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
checkRd: (-1) jsonStr.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Format data as a JSON object (like this: {"x": "120"}).}
       |                                                 ^
checkRd: (-1) jsonStr.Rd:18: Lost braces; missing escapes or markup?
    18 | Format data as a JSON object (like this: {"x": "120"}).
       |                                          ^
checkRd: (-1) fixed_width_no_modeling.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fixed_width_no_modeling.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fixed_width_no_modeling.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Mouloud Belbahri <mouloud.belbahri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mouloud",
                      family = "Belbahri",
                      role = c("aut", "cre"),
                      email = "mouloud.belbahri@gmail.com"),
               person(given = "Olivier",
                      family = "Gandouet",
                      role = "aut"),
               person(given = "Alejandro",
                      family = "Murua",
                      role = "aut"),
               person(given = c("Vahid", "Partovi"),
                      family = "Nia",
                      role = "aut"))
as necessary.
Maintainer: ‘Gregory W. Schwartz <gsch@pennmedicine.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Gregory", "W."),
                    family = "Schwartz",
                    role = c("aut", "cre"),
                    email = "gsch@pennmedicine.upenn.edu")
as necessary.
Maintainer: ‘Damian W. Betebenner <dbetebenner@nciea.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup?
    21 | Recommended range is in {5, ..., 20}.}
       |                         ^
checkRd: (-1) getSegsExtra.Rd:14: Lost braces
    14 | \item{data}{data.table returned from function /code{tdtr}}
       |                                                    ^
Maintainer: ‘Doug Friedman <doug.nhp@gmail.com>’

The Description field contains
  <arXiv:1206.4631v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

The Description field contains
  David M. Blei (2019), available at <arXiv:1907.04907>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ETM.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Minzhe Wang <minzhew@uchicago.edu>’

The Description field contains
  (2017) <arXiv:1704.07016>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bastian Pfeifer <bastian.pfeifer@medunigraz.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "G."),
                      family = "Schimek",
                      role = "aut"),
               person(given = "Eva",
                      family = "Budinska",
                      role = "aut"),
               person(given = "Jie",
                      family = "Ding",
                      role = "aut"),
               person(given = c("Karl", "G."),
                      family = "Kugler",
                      role = "aut"),
               person(given = "Vendula",
                      family = "Svendova",
                      role = "aut"),
               person(given = "Shili",
                      family = "Lin",
                      role = "aut"),
               person(given = "Bastian",
                      family = "Pfeifer",
                      role = c("aut", "cre"),
                      email = "bastian.pfeifer@medunigraz.at"))
as necessary.
Maintainer: ‘Gabriele Sales <gabriele.sales@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sofia",
                      family = "Massa",
                      role = "aut"),
               person(given = "Gabriele",
                      family = "Sales",
                      role = c("aut", "cre"),
                      email = "gabriele.sales@unipd.it"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dat_checks.R’ ‘setters_and_getters.R’
Maintainer: ‘Mahmoud Mosalman Yazdi <m.mosalman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mahmoud", "Mosalman"),
                    family = "Yazdi",
                    role = c("aut", "cre"),
                    email = "m.mosalman@gmail.com")
as necessary.
Maintainer: ‘Gilberto Camara <gilberto.camara.inpe@gmail.com>’

The Description field contains
  (a) 'adabelief' by Zhuang et al (2020), <arXiv:2010.07468>; (b)
  'adabound' by Luo et al.(2019), <arXiv:1902.09843>; (c) 'adahessian' by
  Yao et al.(2021) <arXiv:2006.00719>; (d) 'adamw' by Loshchilov & Hutter
  (2019), <arXiv:1711.05101>; (e) 'madgrad' by Defazio and Jelassi
  (2021), <arXiv:2101.11075>; (f) 'nadam' by Dozat (2019),
  Ma and Yarats(2019), <arXiv:1810.06801>; (h) 'radam' by Liu et al.
  (2019), <arXiv:1908.03265>; (i) 'swats' by Shekar and Sochee (2018),
  <arXiv:1712.07628>; (j) 'yogi' by Zaheer et al.(2019),
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
File ‘torch/libs/torch.so’:
  Found non-API call to R: ‘DATAPTR’
File ‘torch/libs/torchpkg.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Guanglai Li <liguanglai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guanglai",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "liguanglai@gmail.com")
as necessary.
Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Wenjie Wang <wang@wwenjie.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘response_builder.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TPACForCancer.Rd: hpa.data
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Xiang Lyu <lyu17@purdue.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanfang",
                      family = "Yang",
                      role = "aut"),
               person(given = "Kun",
                      family = "Lu",
                      role = "aut"),
               person(given = "Xiang",
                      family = "Lyu",
                      role = c("aut", "cre"),
                      email = "lyu17@purdue.edu"),
               person(given = "Feifang",
                      family = "Hu",
                      role = "aut"),
               person(given = "Yichuan",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Maintainer: ‘Ronja Foraita <foraita@leibniz-bips.de>’

The Description field contains
  <arXiv:2108.13395> provide a guide how to use tpc to analyse cohort
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Carlos P. Carmona <perezcarmonacarlos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "P."),
                    family = "Carmona",
                    role = c("aut", "cre"),
                    email = "perezcarmonacarlos@gmail.com")
as necessary.
Maintainer: ‘Wei Jiang <jiangwei@hrbmu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Jiang",
                    role = c("aut", "cre"),
                    email = "jiangwei@hrbmu.edu.cn")
as necessary.
Maintainer: ‘Alessio Locallo <alessio.locallo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessio",
                      family = "Locallo",
                      role = c("aut", "cre"),
                      email = "alessio.locallo@gmail.com"),
               person(given = "Davide",
                      family = "Prandi",
                      role = "aut",
                      email = "davide.prandi@unitn.it"),
               person(given = "Francesca",
                      family = "Demichelis",
                      role = "aut",
                      email = "f.demichelis@unitn.it"))
as necessary.
Maintainer: ‘Vanesa Balboa-Barreiro <vanesa.balboa@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Vanesa",
                      family = "Balboa-Barreiro",
                      role = c("aut", "cre"),
                      email = "vanesa.balboa@uvigo.es"),
               person(given = "Jacobo",
                      family = "de Una-Alvarez",
                      role = "aut",
                      email = "jacobo@uvigo.es"),
               person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut",
                      email = "lmachado@math.uminho.pt"))
as necessary.

File 'R/TP.idm-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘replace_leading_whitespace.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  heartTP.Rd: heart
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jun Yan <jun.yan@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jun",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "jun.yan@uconn.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chanwoo Lee <chanwoo.lee@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chanwoo",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "chanwoo.lee@wisc.edu"),
               person(given = "Lexin",
                      family = "Li",
                      role = "aut",
                      email = "lexinli@berkeley.edu"),
               person(given = c("Hao", "Helen"),
                      family = "Zhang",
                      role = "aut",
                      email = "hzhang@math.arizona.edu"),
               person(given = "Miaoyan",
                      family = "Wang",
                      role = "aut",
                      email = "miaoyan.wang@wisc.edu"))
as necessary.

The Description field contains
  Series Representation. <arXiv:2105.01783>. The method employs the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) parse_beast_output_files.Rd:23: Lost braces
    23 |     item{\code{estimates}: parameter estimates}
       |         ^
checkRd: (-1) parse_beast_output_files.Rd:24-28: Lost braces
    24 |     item{
       |         ^
checkRd: (-1) parse_beast_output_files.Rd:29-31: Lost braces
    29 |     item{\code{operators}: the BEAST2 MCMC operator
       |         ^
checkRd: (-1) parse_beast_posterior.Rd:28: Lost braces
    28 |     item{\code{estimates}: parameter estimates}
       |         ^
checkRd: (-1) parse_beast_posterior.Rd:29-33: Lost braces
    29 |     item{
       |         ^
Maintainer: ‘Filipe Campelo <fcampelo@uc.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Filipe",
                    family = "Campelo",
                    role = c("aut", "cre"),
                    email = "fcampelo@uc.pt")
as necessary.
Maintainer: ‘Marjolein Bruijning <m.bruijning@uva.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marjolein",
                      family = "Bruijning",
                      role = c("aut", "cre"),
                      email = "m.bruijning@uva.nl"),
               person(given = c("Marco", "D."),
                      family = "Visser",
                      role = "aut"),
               person(given = c("Caspar", "A."),
                      family = "Hallmann",
                      role = "aut"),
               person(given = "Eelke",
                      family = "Jongejans",
                      role = "aut"))
as necessary.
Maintainer: ‘Claudio Zandonella Callegher <claudiozandonella@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Wprime.Rd: foreach
  read_directory.Rd: foreach
  smoother_control.trackeRdata.Rd: foreach
  zones.Rd: foreach
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Brian Battaile <brian.battaile@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brian",
                    family = "Battaile",
                    role = c("aut", "cre"),
                    email = "brian.battaile@gmail.com")
as necessary.
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  printLabelledValues.Rd: setOutputLevel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Charles Taragin <ctaragin+trader@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles",
                    family = "Taragin",
                    role = c("aut", "cre"),
                    email = "ctaragin+trader@gmail.com")
as necessary.
checkRd: (-1) Sim-Functions.Rd:99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:100-102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:108: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:109-110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:111-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:114-116: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Sim-Functions.Rd: Logit-class, CES-class
  cournot_tariff.Rd: Cournot-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Kleanthis Koupidis <koupidis.okfgr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kleanthis",
                      family = "Koupidis",
                      role = c("aut", "cre"),
                      email = "koupidis.okfgr@gmail.com"),
               person(given = "Aikaterini",
                      family = "Chatzopoulou",
                      role = "aut"),
               person(given = "Charalampos",
                      family = "Bratsas",
                      role = "aut"),
               person(given = "Panagiotis",
                      family = "Tzenos",
                      role = "dtc"),
               person(given = c("Josep", "Maria"),
                      family = "Salanova",
                      role = "dtc"))
as necessary.
checkRd: (-1) trait_missing.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:19-20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
'::' or ':::' import not declared from: ‘devtools’
'library' or 'require' calls not declared from:
  ‘XML’ ‘devtools’ ‘jsonlite’ ‘ks’ ‘maps’
Maintainer: ‘Lucas Kook <lucasheinrich.kook@gmail.com>’

The Description field contains
  <doi:10.1111/sjos.12291> and Bischl et al. (2016) <arxiv:1703.03373>,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Rich FitzJohn <rich.fitzjohn@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Babak Naderi <bnaderi9@gmail.com>’

The Description field contains
  Möller (2020) <arXiv:2004.11490>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mingyang Ren <renmingyang17@mails.ucas.ac.cn>’

The Description field contains
  M., Zhen Y., and Wang J. (2022) <arXiv:2211.09391> "Transfer learning
  <arXiv:2310.10239> "Structural transfer learning of non-Gaussian DAG".
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  translate.logit.Rd: multinom
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Cristhian Paredes <craparedesca@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cristhian",
                      family = "Paredes",
                      role = c("aut", "cre"),
                      email = "craparedesca@unal.edu.co"),
               person(given = c("Eduardo", "Rodríguez", "de", "San"),
                      family = "Miguel",
                      role = "aut"))
as necessary.
Maintainer: ‘Jie Zhou <zhoujie02569@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "zhoujie02569@gmail.com"),
               person(given = "Jiajia",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut"))
as necessary.
Maintainer: ‘Xavier Didelot <xavier.didelot@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Somenath Sit <somenath.bhu.2010@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Somenath",
                    family = "Sit",
                    role = c("aut", "cre"),
                    email = "somenath.bhu.2010@gmail.com")
as necessary.
Maintainer: ‘Mingyang Ren <renmingyang17@mails.ucas.ac.cn>’

The Description field contains
  <arXiv:2211.09391>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Maintainer: ‘Almut E. D. Veraart <a.veraart@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Almut", "E.", "D."),
                    family = "Veraart",
                    role = c("aut", "cre"),
                    email = "a.veraart@imperial.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lam Opal Huang <opal.huang@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lam", "Opal"),
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "opal.huang@mail.mcgill.ca")
as necessary.
Maintainer: ‘Marshall Brown <mdbrown@fhcrc.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marshall",
                      family = "Brown",
                      role = c("aut", "cre"),
                      email = "mdbrown@fhcrc.org"),
               person(given = "Holly",
                      family = "Janes",
                      role = "aut"))
as necessary.
checkRd: (-1) trtsel.Rd:69: Lost braces; missing escapes or markup?
    69 | numeric with two values {0,1} and gaussian(link = "identity") otherwise.
       |                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tree_mesh.R’ ‘tree_mesh.Rd’ ‘zzz.R’
Maintainer: ‘Sam Buttrey <buttrey@nps.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sam",
                    family = "Buttrey",
                    role = c("aut", "cre"),
                    email = "buttrey@nps.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rpart.predict.leaves.Rd: rpart
  treeClust.Rd: rpart.control
  treeClust.dist.Rd: daisy
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Sophie Kersting <sophie_kersting@gmx.de>’

The Description field contains
  Kersting, and L. Kühn (2023) <arXiv:2307.14537>, which provides precise
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Silvestre Garcia de Jalon <s.garciadejalon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Silvestre", "Garcia"),
                    family = "de Jalon",
                    role = c("aut", "cre"),
                    email = "s.garciadejalon@gmail.com")
as necessary.
Maintainer: ‘Wen Tian (Wendy) Wang <wtwang@sfu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Wen", "Tian", "Wang,Lloyd"),
                      family = "Elliott",
                      role = "aut",
                      comment = "Wendy"),
               person(given = c("Wen", "Tian"),
                      family = "Wang",
                      role = "cre",
                      email = "wtwang@sfu.ca",
                      comment = "Wendy"))
as necessary.
Maintainer: ‘Qingyao Sun <sunqingyao19970825@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qingyao",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "sunqingyao19970825@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  work of Li et al. (2019) <arXiv:1906.10845>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Matthew Gould <mgould@sfu.ca>’

The Description field contains
  <arXiv:1904.03332>). The core method converts rooted unlabeled phylo
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ranger_surv.unify.Rd’
Maintainer: ‘Oskar Hagen <oskar.hagen@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oskar",
                      family = "Hagen",
                      role = c("aut", "cre"),
                      email = "oskar.hagen@outlook.com"),
               person(given = "Tanja",
                      family = "Stadler",
                      role = "aut"))
as necessary.
Maintainer: ‘Tanja Stadler <tanja.stadler@bsse.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tanja",
                    family = "Stadler",
                    role = c("aut", "cre"),
                    email = "tanja.stadler@bsse.ethz.ch")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotGroves.Rd: s.class
  plotGrovesD3.Rd: scatterD3
  plotTreeDiff.Rd: plot.phylo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Erik Volz <erik.volz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erik",
                    family = "Volz",
                    role = c("aut", "cre"),
                    email = "erik.volz@gmail.com")
as necessary.
Maintainer: ‘Ashkan Ertefaie <ashkan_ertefaie@urmc.rochester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xinyao",
                      family = "Ji",
                      role = "aut"),
               person(given = "Ashkan",
                      family = "Ertefaie",
                      role = c("aut", "cre"),
                      email = "ashkan_ertefaie@urmc.rochester.edu"))
as necessary.
Maintainer: ‘Phil J Watson <philwatson.slr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Phil", "J"),
                    family = "Watson",
                    role = c("aut", "cre"),
                    email = "philwatson.slr@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  check.decomp.Rd: Rssa
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jasin Machkour <jasin.machkour@tu-darmstadt.de>’

The Description field contains
  (2022) <arXiv:2110.06048>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_weights.Rd’ ‘fit_msm.Rd’ ‘load_expanded_data.Rd’
    ‘save_to_csv.Rd’ ‘save_to_datatable.Rd’ ‘save_to_duckdb.Rd’
    ‘set_censor_weight_model.Rd’ ‘set_data.Rd’ ‘set_expansion_options.Rd’
    ‘set_outcome_model.Rd’ ‘set_switch_weight_model.Rd’
    ‘weight_model_data_indices.Rd’
Maintainer: ‘Vicky Qian Wu <wuqian7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ed", "Zhang", ";", "Vicky", "Qian", "Wu", ";", "Shein-Chung", "Chow", ";", "Harry"),
                      family = "G.Zhang",
                      role = "aut",
                      email = "ed.zhang.jr@gmail.com",
                      comment = "Quality check"),
               person(given = c("Vicky", "Qian"),
                      family = "Wu",
                      role = "cre",
                      email = "wuqian7@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) coef.tridim_transformation.Rd:31: Lost braces
    31 | If summary=TRUE, a data.frame with columns "dv{index}" with mean for each dependent
       |                                               ^
checkRd: (-1) coef.tridim_transformation.Rd:32: Lost braces
    32 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                        ^
checkRd: (-1) coef.tridim_transformation.Rd:32: Lost braces; missing escapes or markup?
    32 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                                ^
checkRd: (-1) predict.tridim_transformation.Rd:24: Lost braces
    24 | If summary=TRUE, a data.frame with columns "dv{index}" with mean for each dependent
       |                                               ^
checkRd: (-1) predict.tridim_transformation.Rd:25: Lost braces
    25 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                        ^
checkRd: (-1) predict.tridim_transformation.Rd:25: Lost braces; missing escapes or markup?
    25 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                                ^
checkRd: (-1) variable_summary.Rd:18: Lost braces; missing escapes or markup?
    18 | data.frame with "{var_name}" column for the mean and
       |                  ^
checkRd: (-1) variable_summary.Rd:19: Lost braces; missing escapes or markup?
    19 | "{var_name}_{prob}" columns for each probability.
       |  ^
checkRd: (-1) variable_summary.Rd:19: Lost braces; missing escapes or markup?
    19 | "{var_name}_{prob}" columns for each probability.
       |             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TriDimRegression-package.Rd: loo, waic
  waic.tridim_transformation.Rd: loo-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Drew",
                      family = "Schmidt",
                      role = "aut"),
               person(given = "Yuuki",
                      family = "Takano",
                      role = "cph"))
as necessary.
Maintainer: ‘Phil Mike Jones <philmikejones@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Maintainer: ‘Valentin Todorov <valentin.todorov@chello.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Hennig",
                      role = "aut",
                      email = "chrish@stats.ucl.ac.uk"),
               person(given = "Valentin",
                      family = "Todorov",
                      role = "cre",
                      email = "valentin.todorov@chello.at"))
as necessary.
Maintainer: ‘Timo Stöcker <timo.stoecker@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Timo",
                      family = "Stöcker",
                      role = c("aut", "cre"),
                      email = "timo.stoecker@hhu.de"),
               person(given = "Noah",
                      family = "Simon",
                      role = "aut"),
               person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/Trackage/tripEstimation
which should likely be
  https://github.com/Trackage/tripEstimation/issues
instead.
Maintainer: ‘Felix Schönbrodt <felix.schoenbrodt@psy.lmu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("F.", "D."),
                      family = "Schönbrodt",
                      role = "aut"),
               person(given = c("M.", "D."),
                      family = "Back",
                      role = "aut"),
               person(given = c("S.", "C."),
                      family = "Schmukle",
                      role = "aut"),
               person(given = "Felix",
                      family = "Schönbrodt",
                      role = "cre",
                      email = "felix.schoenbrodt@psy.lmu.de"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Katarzyna Pekala <katarzyna.pekala@gmail.com>’

The Description field contains
  models. Find more details in Biecek (2018) <arXiv:1806.08915>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chad Hammerquist <chammerquist@scentsy.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chad",
                      family = "Hammerquist",
                      role = c("aut", "cre"),
                      email = "chammerquist@scentsy.com"),
               person(given = "Scentsy",
                      family = "Inc",
                      role = "cph"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_troopdata.R’
Maintainer: ‘Richard Ambler <rambler@ibwya.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Richard",
                    family = "Ambler",
                    role = c("aut", "cre"),
                    email = "rambler@ibwya.net")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Somjit Roy <somjit.roy2001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Somjit",
                    family = "Roy",
                    role = c("aut", "cre"),
                    email = "somjit.roy2001@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_item_metadata.R’ ‘get_subscribed_metadata.R’
Maintainer: ‘David Hugh-Jones <davidhughjones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hugh-Jones",
                    role = c("aut", "cre"),
                    email = "davidhughjones@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yuyao Wang <yuw079@ucsd.edu>’

The Description field contains
  dependent left truncation" <arXiv:2208.06836>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frederick",
                      family = "Novomestky",
                      role = c("aut", "cre"),
                      email = "fn334@nyu.edu"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = "aut",
                      email = "saralees.nadarajah@manchester.ac.uk"))
as necessary.
Maintainer: ‘Anita Lindmark <anita.lindmark@stat.umu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anita",
                      family = "Lindmark",
                      role = c("aut", "cre"),
                      email = "anita.lindmark@stat.umu.se"),
               person(given = "Maria",
                      family = "Karlsson",
                      role = "aut"),
               person(given = c("Department", "of"),
                      family = "Statistics",
                      role = "aut"),
               person(given = "Umea",
                      family = "University",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Michael Braun <braunm@smu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "charlie@stat.umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘log2console’
Maintainer: ‘Rainer Schlittgen <R.Schlittgen@t-online.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rainer",
                    family = "Schlittgen",
                    role = c("aut", "cre"),
                    email = "r.schlittgen@t-online.de")
as necessary.
Maintainer: ‘Kung-Sik Chan <kungsik.chan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kung-Sik",
                      family = "Chan",
                      role = c("aut", "cre"),
                      email = "kungsik.chan@gmail.com"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "aut"))
as necessary.
checkRd: (-1) summary.armasubsets.Rd:16: Lost braces
    16 | \item{matrix.logical}{With matrix=TRUE, the matrix is logical TRUE/FALSE or string "*"/code{" "}}
       |                                                                                            ^
checkRd: (-1) tsBSS-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:34: Lost braces in \itemize; meant \describe ?
Maintainer: ‘David Carl <david.carl@phd.unibocconi.it>’

The Description field contains
  Variables" <arXiv:2203.12808>. The vignette is available in Carl,
  <arXiv:2304.00513>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_distance.R’ ‘reason_dataleaks.R’ ‘viz_dataleaks.R’
Maintainer: ‘Javier López-de-Lacalle <javlacalle@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "López-de-Lacalle",
                    role = c("aut", "cre"),
                    email = "javlacalle@yahoo.es")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘tsdecomp-package.Rd’:
    \keyword{package, ts}
Maintainer: ‘Wenchuan Guo <wguo1017@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wenchuan",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "wguo1017@gmail.com"),
               person(given = "Jianan",
                      family = "Hui",
                      role = "aut"),
               person(given = "Bob",
                      family = "Zhong",
                      role = "aut"))
as necessary.
Maintainer: ‘Jorge Vieira <jorgealexandrevieira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jorge",
                    family = "Vieira",
                    role = c("aut", "cre"),
                    email = "jorgealexandrevieira@gmail.com")
as necessary.
Maintainer: ‘Luke Mosley <l.mosley@lancaster.ac.uk>’

The Description field contains
  <arXiv:2108.05783> for disaggregating low-frequency series in the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) disaggregate.Rd:56: Escaped LaTeX specials: \&
Maintainer: ‘Usue Mori <usue.mori@ehu.eus>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) example.database2.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) example.database2.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) example.database3.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) example.database3.Rd:19: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Vitor Cerqueira <cerqueira.vitormanuel@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hakki Sabah <hakkisabah@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hakki",
                    family = "Sabah",
                    role = c("aut", "cre"),
                    email = "hakkisabah@hotmail.com")
as necessary.
Maintainer: ‘Antonio Fabio Di Narzo <antonio.fabio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Antonio",
                      role = c("aut", "cre"),
                      email = "antonio.fabio@gmail.com"),
               person(given = c("Fabio", "Di"),
                      family = "Narzo",
                      role = "aut"))
as necessary.
Maintainer: ‘Ali Saeb <ali.saeb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ali",
                    family = "Saeb",
                    role = c("aut", "cre"),
                    email = "ali.saeb@gmail.com")
as necessary.
Maintainer: ‘Francisco Martinez <fmartin@ujaen.es>’

The BugReports field in DESCRIPTION has
  https://github.com/franciscomartinezdelrio/tsfgrnn
which should likely be
  https://github.com/franciscomartinezdelrio/tsfgrnn/issues
instead.
Maintainer: ‘Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sandipan",
                      family = "Samanta",
                      role = "aut"),
               person(given = c("Ranjit", "Kumar"),
                      family = "Paul",
                      role = "aut"),
               person(given = "Dipankar",
                      family = "Mitra",
                      role = "aut"),
               person(given = c("Dr.", "Ranjit", "Kumar"),
                      family = "Paul",
                      role = "cre",
                      email = "ranjitstat@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘benchmark.R’ ‘print.R’
Maintainer: ‘Yao-Hwei Fang <yhfang@nhri.org.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yao-Hwei",
                      family = "Fang",
                      role = c("aut", "cre"),
                      email = "yhfang@nhri.org.tw"),
               person(given = "Jie-Huei",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Chao", "A."),
                      family = "Hsiung",
                      role = "aut"))
as necessary.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Sheng",
                      role = "aut"),
               person(given = "Peihua",
                      family = "Qiu",
                      role = "aut",
                      email = "pqiu@ufl.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"))
as necessary.
Maintainer: ‘Eraldo B. dos Anjos Filho <ebdaf1@de.ufpe.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eraldo", "B.", "dos", "Anjos"),
                      family = "Filho",
                      role = c("aut", "cre"),
                      email = "ebdaf1@de.ufpe.br"),
               person(given = c("Aldo", "William", "Medina"),
                      family = "Garay",
                      role = "aut",
                      email = "agaray@de.ufpe.br"))
as necessary.
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Roger", "D."),
                      family = "Peng",
                      role = c("aut", "cre"),
                      email = "roger.peng@austin.utexas.edu"),
               person(given = c("with", "contributions", "from", "Aidan"),
                      family = "McDermott",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Justin Donaldson <jdonaldson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Justin",
                    family = "Donaldson",
                    role = c("aut", "cre"),
                    email = "jdonaldson@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘centrality.R’ ‘compare_gvar.R’ ‘posterior_plot.R’
Maintainer: ‘Javier López-de-Lacalle <javlacalle@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "López-de-Lacalle",
                    role = c("aut", "cre"),
                    email = "javlacalle@yahoo.es")
as necessary.
Maintainer: ‘Jouni Helske <jouni.helske@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jouni",
                    family = "Helske",
                    role = c("aut", "cre"),
                    email = "jouni.helske@iki.fi")
as necessary.
Maintainer: ‘Bernd Bischl <bernd_bischl@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernd",
                      family = "Bischl",
                      role = c("aut", "cre"),
                      email = "bernd_bischl@gmx.net"),
               person(given = "Jakob",
                      family = "Bossek",
                      role = "aut",
                      email = "jakob.bossek@tu-dortmund.de"),
               person(given = "Olaf",
                      family = "Mersmann",
                      role = "aut",
                      email = "olafm@p-value.net"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  arimapar-deprecated.Rd: auto.arima
  arimapred.Rd: auto.arima
  fittestArima.Rd: auto.arima, forecast
  fittestArimaKF.Rd: predict.SSModel, SSMarima, KFAS, auto.arima,
    SSModel, AICc
  fittestEMD.Rd: AICc
  fittestLM.Rd: AICc
  fittestMAS.Rd: ets, stlf, AICc
  fittestPolyR.Rd: dredge, AICc
  fittestPolyRKF.Rd: SSModel, KFAS, fitSSM, AICc
  fittestWavelet.Rd: ets, AICc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Higor Cotta <cotta.higor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Higor",
                      family = "Cotta",
                      role = c("aut", "cre"),
                      email = "cotta.higor@gmail.com"),
               person(given = "Valderio",
                      family = "Reisen",
                      role = "aut"),
               person(given = "Pascal",
                      family = "Bondon",
                      role = "aut"),
               person(given = "Céline",
                      family = "Lévy-Leduc",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter Laurinec <tsreprpackage@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) repr_dwt.Rd:28: Lost braces; missing escapes or markup?
    28 | The final representation has length equal to floor(n / 2^{level}), where n is a length of original time series.
       |                                                          ^
Maintainer: ‘Michał Narajewski <michal.narajewski@uni-due.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Avi Blinder <aviblinder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Avi",
                    family = "Blinder",
                    role = c("aut", "cre"),
                    email = "aviblinder@gmail.com")
as necessary.
Maintainer: ‘Arden Burrell <arden.burrell@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Masami Saga <msaga@mtb.biglobe.ne.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("The", "Institute", "of", "Statistical"),
                      family = "Mathematics",
                      role = "aut"),
               person(given = c("based", "on", "the", "program", "by", "Genshiro"),
                      family = "Kitagawa",
                      role = "aut"),
               person(given = "Masami",
                      family = "Saga",
                      role = "cre",
                      email = "msaga@mtb.biglobe.ne.jp"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘berkowitz.R’ ‘dac.R’ ‘gmm.R’ ‘hongli.R’ ‘minzar.R’ ‘nyblom.R’
    ‘shortfall_de.R’ ‘signbias.R’ ‘var.R’ ‘var_cp.R’
Maintainer: ‘Alberto Lopez Moreno <bertolomo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alberto", "Lopez"),
                    family = "Moreno",
                    role = c("aut", "cre"),
                    email = "bertolomo@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  FULLoption.Rd: impute, local.trend, mannKen, seasonTrend, seaKen
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotmatch.Rd: ppp
  sumppdist.Rd: ppp, solist
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Marco Albrecht <marco.albrecht@posteo.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Albrecht",
                    role = c("aut", "cre"),
                    email = "marco.albrecht@posteo.de")
as necessary.
Maintainer: ‘Meredith Ray <maray@memphis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Meredith",
                      family = "Ray",
                      role = c("aut", "cre"),
                      email = "maray@memphis.edu"),
               person(given = "Xin",
                      family = "Tong",
                      role = "aut"),
               person(given = "Hongmei",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ttScreening-package.Rd: sva
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Antonio Meneses <antoniomenesesfreire@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Meneses",
                      role = c("aut", "cre"),
                      email = "antoniomenesesfreire@hotmail.com"),
               person(given = "Salvador",
                      family = "Naya",
                      role = "aut",
                      email = "salva@udc.es"),
               person(given = "Javier",
                      family = "Tarrio-Saavedra",
                      role = "aut",
                      email = "jtarrio@udc.es"))
as necessary.
Maintainer: ‘Carlos A. Martinez <amartin@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "A.", "Martinez", "based", "on", "the", "work", "of"),
                      family = "Ribeiro",
                      role = c("aut", "cre")),
               person(family = "Rosseti.",
                      comment = "2015"),
               person(given = c("Carlos", "A."),
                      family = "Martinez",
                      role = "cre",
                      email = "amartin@unal.edu.co"))
as necessary.
Maintainer: ‘Thorn Thaler <thorn.thaler@thothal.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thorn",
                    family = "Thaler",
                    role = c("aut", "cre"),
                    email = "thorn.thaler@thothal.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tufte_handout.Rd: pdf_document, html_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael C Sachs <sachsmc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Sachs",
                    role = c("aut", "cre"),
                    email = "sachsmc@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Yuqing Pan <yuqing.pan@stat.fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuqing",
                      family = "Pan",
                      role = c("aut", "cre"),
                      email = "yuqing.pan@stat.fsu.edu"),
               person(given = "Qing",
                      family = "Mai",
                      role = "aut",
                      email = "mai@stat.fsu.edu"),
               person(given = "Xin",
                      family = "Zhang",
                      role = "aut",
                      email = "henry@stat.fsu.edu"))
as necessary.

The Description field contains
  (2019) <arXiv:1904.03469>. Functions are included for covariate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Julia Wilkerson <jmwilkers@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julia",
                    family = "Wilkerson",
                    role = c("aut", "cre"),
                    email = "jmwilkers@outlook.com")
as necessary.
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christoph",
                      family = "Müssel",
                      role = "aut"),
               person(given = "Ludwig",
                      family = "Lausser",
                      role = "aut"),
               person(given = "Hans",
                      family = "Kestler",
                      role = c("aut", "cre"),
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
Maintainer: ‘Emmanuel Lazaridis <emmanuel@lazaridis.eu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘duplicate.Rd’:
    \keyword{duplicate,}
    \keyword{duplicated,}
    \keyword{repeat,}
  File ‘not-in.Rd’:
    \keyword{time,}
  File ‘orphan.Rd’:
    \keyword{orphan,}
  File ‘triplicate.Rd’:
    \keyword{repeat,}
    \keyword{triplicate,}
    \keyword{triplicated,}
  File ‘triplicated.Rd’:
    \keyword{repeat,}
    \keyword{triplicate,}
    \keyword{triplicated,}
  File ‘tuplicate.Rd’:
    \keyword{n-replicate,}
    \keyword{n-replicated,}
    \keyword{repeat,}
    \keyword{repeated,}
  File ‘tuplicated.Rd’:
    \keyword{n-replicate,}
    \keyword{n-replicated,}
    \keyword{repeat,}
    \keyword{repeated,}
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘show_parliament.R’ ‘show_province_and_party.R’
Maintainer: ‘Feifei ZHANG<tushare_pro@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feifei",
                    family = "ZHANG",
                    role = c("aut", "cre"),
                    email = "tushare_pro@163.com")
as necessary.
Maintainer: ‘Susana Campos-Martins <scmartins@ucp.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Susana",
                      family = "Campos-Martins",
                      role = c("aut", "cre"),
                      email = "scmartins@ucp.pt"),
               person(given = "Genaro",
                      family = "Sucarrat",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  coef.mtvgarch.Rd: zoo, garchx
  coef.tvgarch.Rd: zoo
  coef.tvgarchTest.Rd: zoo
  mtvgarch.Rd: zoo, garchx
  mtvgarchSim.Rd: zoo, garchx
  tvgarch.Rd: zoo, garchx
  tvgarchObj.Rd: zoo
  tvgarchSim.Rd: zoo, garchx
  tvgarchTest.Rd: zoo, garchx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Vincent Landau <vincent@csp-inc.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Donna Coffman <dcoffman@temple.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juan Manuel Truppia <jmtruppia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Juan", "Manuel"),
                    family = "Truppia",
                    role = c("aut", "cre"),
                    email = "jmtruppia@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  dx.wts.mediation.Rd: ps
  wgtmed.Rd: gbm, ps, twang
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lane Burgette <burgette@rand.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthew",
                      family = "Cefalu",
                      role = "aut"),
               person(given = "Greg",
                      family = "Ridgeway",
                      role = "aut"),
               person(given = "Dan",
                      family = "McCaffrey",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Morral",
                      role = "aut"),
               person(given = c("Beth", "Ann"),
                      family = "Griffin",
                      role = "aut"),
               person(given = "Lane",
                      family = "Burgette",
                      role = c("aut", "cre"),
                      email = "burgette@rand.org"))
as necessary.
Maintainer: ‘Peter K. Dunn <pdunn2@usc.edu.au>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) tweedie-internal.Rd:74: Lost braces
    74 |         doi{10.1093/biomet/74.2.221}
       |            ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Swanson <dms866@mail.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Swanson",
                    role = c("aut", "cre"),
                    email = "dms866@mail.harvard.edu")
as necessary.
Maintainer: ‘Connor Dowd <cd@codowd.com>’

The Description field contains
  that of Anderson-Darling. See the companion paper at <arXiv:2007.01360>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) twosigmag.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:91: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twoway.Rd:66: Lost braces
    66 | code{\link{twoway.formula}}, code{\link[stats]{medpolish}}
       |     ^
checkRd: (-1) twoway.Rd:66: Lost braces
    66 | code{\link{twoway.formula}}, code{\link[stats]{medpolish}}
       |                                  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^
File ‘typetracer/libs/typetracer.so’:
  Found non-API call to R: ‘SET_BODY’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Running examples in ‘typr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: typr_query
> ### Title: Query within a Typst file
> ### Aliases: typr_query
> 
> ### ** Examples
> 
> ## Don't show: 
> if (has_any_typst()) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ tf <- fs::file_temp(ext = 'typ')
+ writeLines(text = '= test <lbl>', con = tf)
+ typr_query(input = tf, selector = '<lbl>')
+ ## Don't show: 
+ }) # examplesIf
> tf <- fs::file_temp(ext = "typ")
> writeLines(text = "= test <lbl>", con = tf)
> typr_query(input = tf, selector = "<lbl>")
Error: parse error: premature EOF
                                       
                     (right here) ------^
Execution halted
Running ‘testthat.R’ [10s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(typr)
  > 
  > test_check('typr')
  
  Error in skip_if_no_internet("github.com") : object 'sitr' not found
  Typst watch process started.
  Run `typr_watch_stop()` to stop the process.
  Stopping previous Typst watch process...
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 13 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • No internet connection (1): 'test-init.R:3:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-query.R:4:3'): typr_query works ────────────────────────────────
  Error: parse error: premature EOF
                                         
                       (right here) ------^
  
  Backtrace:
      ▆
   1. ├─testthat::expect_true(is.list(typr_query("../test.typ", "<my-sec>"))) at test-query.R:4:3
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─typr::typr_query("../test.typ", "<my-sec>")
   5.   └─jsonlite::fromJSON(txt = out, simplifyVector = TRUE)
   6.     └─jsonlite:::parse_and_simplify(...)
   7.       └─jsonlite:::parseJSON(txt, bigint_as_char)
   8.         └─jsonlite:::parse_string(txt, bigint_as_char)
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 13 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Sebastien Thonnard <sebastien.thonnard@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastien",
                    family = "Thonnard",
                    role = c("aut", "cre"),
                    email = "sebastien.thonnard@icloud.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) cambodia.Rd:47: Lost braces
    47 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
checkRd: (-1) microdata.Rd:33: Lost braces
    33 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
checkRd: (-1) u5mr_cohort.Rd:111: Lost braces
   111 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Christophe Zemmour <christophe.zemmour@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "Esterni", "with", "contribution", "from", "Baboukar"),
                      family = "Mane",
                      role = "aut"),
               person(given = "Christophe",
                      family = "Zemmour",
                      role = "cre",
                      email = "christophe.zemmour@gmail.com"))
as necessary.
Maintainer: ‘Mikaela Koutrouli <mikaela.koutrouli@cpr.ku.dk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gabriela Cybis <gcybis@gmail.com>’

The Description field contains
  Valk and Gabriela B. Cybis (2021) <arXiv:2106.09115>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Shixiang Wang <w_shixiang@163.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Luc Duchateau <Luc.Duchateau@ugent.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hans",
                      family = "Laevens",
                      role = "aut"),
               person(given = "Luc",
                      family = "Duchateau",
                      role = c("aut", "cre"),
                      email = "luc.duchateau@ugent.be"),
               person(given = "Klara",
                      family = "Goethals",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = "aut"),
               person(given = "Paul",
                      family = "Janssen",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer field differs from that derived from Authors@R
  Maintainer: ‘ORPHANED’
  Authors@R:  ‘James Hiebert <hiebert@uvic.ca>’
possible bashism in configure.ac line 34 (should be 'b = a'):
  dnl if test "${ac_cv_lib_expat_XML_ParserCreate}" == yes; then
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  associationsDiamondPlot.Rd: ggplot
  basicDiamondplotFunctions.Rd: geom_polygon, geom_jitter, ggplot
  biAxisDiamondPlot.Rd: ggplot
  comparisonDiamondPlots.Rd: gtable
  diamondPlot.Rd: ggplot
  ggBoxplot.Rd: ggplot, geom_boxplot
  ggEasyPlots.Rd: ggplot, geom_ridgeline, geom_bar
  ggProportionPlot.Rd: linetype, ggplot2
  ggqq.Rd: ggplot
  knitFig.Rd: ggplot, knit_expand, knit
  meanSDtoDiamondPlot.Rd: ggplot
  meansDiamondPlot.Rd: ggplot
  pwr.omegasq.Rd: pwr.anova.test, pwr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Paul TERNYNCK <ternynck@lisic.univ-littoral.fr>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘MarelCarnot.Rd’:
    http://doi.org/10.17882/39754
Maintainer: ‘Minna Genbaeck <minna.genback@umu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minna",
                      family = "Genbaeck,",
                      role = c("aut", "cre")),
               person(given = "Minna",
                      family = "Genbaeck",
                      role = "cre",
                      email = "minna.genback@umu.se"))
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    uktrans_get is fixed when start_date is used (#2)
    Extra layer of of NULL returns to fail gracefully with an informative message.
    Removed travis & appveyor and using gh_actions instead.
    Using gh-pages to create the pkgdown website.
    Create an app as vignette page to search with the help of uklr.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘augment_gazetteer.Rd’ ‘locate_event.Rd’
Maintainer: ‘Kaniav Kamary <kamary@ceremade.dauphine.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kaniav",
                      family = "Kamary",
                      role = c("aut", "cre"),
                      email = "kamary@ceremade.dauphine.fr"),
               person(given = "Kate",
                      family = "Lee",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘readtextgrid.R’
Maintainer: ‘Tomasz Konopka <tokonopka@gmail.com>’

The Description field contains
  (2018) in <arXiv:1802.03426>. This package provides an interface for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Linus Seelinger <mail@linusseelinger.de>’

The BugReports field in DESCRIPTION has
  https://github.com/um-bridge
which should likely be
  https://github.com/um-bridge/issues
instead.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = c("Glen", "D."),
                      family = "Meeden",
                      role = "aut",
                      email = "glen@stat.umn.edu"))
as necessary.
Maintainer: ‘Piotr Fryzlewicz <p.fryzlewicz@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Piotr",
                    family = "Fryzlewicz",
                    role = c("aut", "cre"),
                    email = "p.fryzlewicz@lse.ac.uk")
as necessary.
Maintainer: ‘Hugo Gasca-Aragon <hugo_gasca_aragon@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hugo",
                    family = "Gasca-Aragon",
                    role = c("aut", "cre"),
                    email = "hugo_gasca_aragon@hotmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘annotate_mf.R’ ‘annotate_mf_all.R’
Maintainer: ‘Yunro Chung <yunro.chung@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yunro",
                    family = "Chung",
                    role = c("aut", "cre"),
                    email = "yunro.chung@asu.edu")
as necessary.
Maintainer: ‘Oscar Alberto Quijano Xacur <oscar.quijano@use.startmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Oscar", "Alberto", "Quijano"),
                    family = "Xacur",
                    role = c("aut", "cre"),
                    email = "oscar.quijano@use.startmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chia-Wei Hsu <Chia-Wei.Hsu@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chia-Wei",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "chia-wei.hsu@stjude.org"),
               person(given = "Haitao",
                      family = "Pan",
                      role = "aut"),
               person(given = "Rongji",
                      family = "Mu",
                      role = "aut"))
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Zhipeng Xu <xzhipeng@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhipeng",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "xzhipeng@umich.edu"),
               person(given = "Chenkai",
                      family = "Sun",
                      role = "aut",
                      email = "sunchenk@umich.edu"),
               person(given = "Aman",
                      family = "Karunakaran",
                      role = "aut",
                      email = "akarunak@umich.edu"),
               person(given = "Quentin",
                      family = "Stout",
                      role = "aut",
                      email = "qstout@umich.edu"))
as necessary.
checkRd: (-1) reg_1d.Rd:42: Lost braces; missing escapes or markup?
    42 |         \item Metric input is not in {1,2,3}: Metric does not exist
       |                                      ^
checkRd: (-1) reg_2d.Rd:33: Lost braces; missing escapes or markup?
    33 |         \item Metric input is not in {1,2,3}: Metric does not exist
       |                                      ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Claudia Koellmann <koellmann@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Claudia",
                    family = "Koellmann",
                    role = c("aut", "cre"),
                    email = "koellmann@statistik.tu-dortmund.de")
as necessary.
Maintainer: ‘Takeshi Emura <takeshiemura@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takeshi",
                      family = "Emura",
                      role = c("aut", "cre"),
                      email = "takeshiemura@gmail.com"),
               person(given = "Wei-Chern",
                      family = "Hsu",
                      role = "aut"))
as necessary.
Maintainer: ‘Jonathan Berrisch <Jonathan@Berrisch.biz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Berrisch",
                    role = c("aut", "cre"),
                    email = "jonathan@berrisch.biz")
as necessary.
checkRd: (-1) simRedCard.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simRedCard.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David Navarro-Gonzalez <david.navarro@urv.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pere", "Joan"),
                      family = "Ferrando",
                      role = "aut"),
               person(given = "David",
                      family = "Navarro-Gonzalez",
                      role = c("aut", "cre"),
                      email = "david.navarro@urv.cat"),
               person(given = "Urbano",
                      family = "Lorenzo-Seva",
                      role = "aut"))
as necessary.
Maintainer: ‘Marcello D'Orazio <mdo.statmatch@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcello",
                    family = "D'Orazio",
                    role = c("aut", "cre"),
                    email = "mdo.statmatch@gmail.com")
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘runm.Rd’ ‘unm_summary.R’
Maintainer: ‘Erika S. Helgeson <helge@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Erika", "S."),
                      family = "Helgeson",
                      role = c("aut", "cre"),
                      email = "helge@umn.edu"),
               person(given = "David",
                      family = "Vock",
                      role = "aut"),
               person(given = "Eric",
                      family = "Bair",
                      role = "aut"))
as necessary.
checkRd: (-1) UNPaC_Copula.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{\code{selected_features}}: {A vector of integers indicating the features retained by the feature filtering process.}
       |                                  ^
checkRd: (-1) UNPaC_Copula.Rd:60: Lost braces; missing escapes or markup?
    60 | \item{\code{sim_CI}}: {vector containing the cluster indices for each generated unimodal reference distribution}
       |                       ^
checkRd: (-1) UNPaC_Copula.Rd:61-62: Lost braces
    61 | \item{\code{pvalue_emp}}: {the empirical p-value:  the proportion of times the cluster index from the reference
       |                           ^
checkRd: (-1) UNPaC_Copula.Rd:63: Lost braces; missing escapes or markup?
    63 | \item{\code{pvalue_norm}}: {the normalized p-value: the simulated p-value based on comparison to a standard normal distribution }
       |                            ^
checkRd: (-1) UNPaC_num_clust.Rd:58-62: Lost braces
    58 | \item{\code{BestK}}: {A matrix with 1 row and 4 columns named: "Max_CI","Max_CI_wi_1SE","Max_scaled_CI" and "Max_logWCSS_wi_1SE".
       |                      ^
checkRd: (-1) UNPaC_num_clust.Rd:63-65: Lost braces
    63 | \item{\code{full_process}}: {A matrix containing the number of clusters, K, evaluated, the CI from the data, the average CI from the null
       |                             ^
checkRd: (-1) UNPaC_num_clust.Rd:66: Lost braces; missing escapes or markup?
    66 | \item{\code{selected_features}}: {A vector of integers indicating the features retained by the feature filtering process.}}
       |                                  ^
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘available_version.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  UpDown.Rd: normalmixEM, mclust
  UpDownApp.Rd: shiny, ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Yao Liu <lyao222lll@nwafu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yao",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "lyao222lll@nwafu.edu.cn")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  barplot_hp.Rd: rdacca.hp
  upset_vp.Rd: rdacca.hp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Jay",
                      family = "Jacobs",
                      role = c("aut", "cre")),
               person(given = "Drew",
                      family = "Schmidt",
                      role = "aut"),
               person(given = "Mark",
                      family = "Greenaway",
                      role = "ctb"),
               person(given = "Bob",
                      family = "Rudis",
                      role = "ctb"),
               person(given = "Alex",
                      family = "Pinto",
                      role = "ctb"),
               person(given = "Maryam",
                      family = "Khezrzadeh",
                      role = "ctb"),
               person(given = "Peter",
                      family = "Meilstrup",
                      role = "ctb"),
               person(given = c("Adam", "M."),
                      family = "Costello",
                      role = "cph"),
               person(given = "Jeff",
                      family = "Bezanson",
                      role = "cph"),
               person(given = "Peter",
                      family = "Meilstrup",
                      role = "ctb"),
               person(given = "Xueyuan",
                      family = "Jiang",
                      role = "ctb"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
checkRd: (-1) encoder.Rd:32-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) encoder.Rd:38-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) encoder.Rd:45-48: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Maintainer: ‘Frederick Liu <sliu85@u.rochester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frederick",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "sliu85@u.rochester.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘county_complete.Rd’ ‘fatal_police_shootings.Rd’ ‘gerrymander.Rd’
    ‘pierce_county_house_sales.Rd’ ‘pop_age_2019.Rd’ ‘pop_race_2019.Rd’
    ‘state_stats.Rd’ ‘us_temp.Rd’
Maintainer: ‘Babak Naimi <naimi.b@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babak",
                    family = "Naimi",
                    role = c("aut", "cre"),
                    email = "naimi.b@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘intersection_powerset.R’ ‘powerset_icounts.Rd’ ‘pr.R’ ‘pr.boot.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘usgas.Rd’
Maintainer: ‘Sinead E. Morris <sinead.morris@columbia.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘John Verzani <verzani@math.csi.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Verzani",
                    role = c("aut", "cre"),
                    email = "verzani@math.csi.cuny.edu")
as necessary.
checkRd: (-1) aosat.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) aosat.Rd:21: Escaped LaTeX specials: \_
checkRd: (-1) arctic.oscillations.Rd:19: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) arctic.oscillations.Rd:20: Escaped LaTeX specials: \_
checkRd: (-1) babies.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) babies.Rd:41: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:43: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) exec.pay.Rd:5: Escaped LaTeX specials: \$
checkRd: (-1) sp500.excess.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) sp500.excess.Rd:6: Escaped LaTeX specials: \&
Maintainer: ‘Paula M. Murray <paula.murray@math.mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paula", "M."),
                      family = "Murray",
                      role = c("aut", "cre"),
                      email = "paula.murray@math.mcmaster.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  usl.Rd: nlxb, nlsr
  usl.solve.nlxb.Rd: nlxb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Thomas B. Berrett <tom.berrett@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thomas", "B."),
                      family = "Berrett",
                      role = c("aut", "cre"),
                      email = "tom.berrett@warwick.ac.uk"),
               person(given = "Ioannis",
                      family = "Kontoyiannis",
                      role = "aut",
                      email = "yiannis@maths.cam.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut",
                      email = "r.samworth@statslab.cam.ac.uk"))
as necessary.

The Description field contains
  <arXiv:2001.05513>, and shown to be minimax rate optimal in a wide
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Snigdhansu Chatterjee <chatt019@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Snigdhansu",
                    family = "Chatterjee",
                    role = c("aut", "cre"),
                    email = "chatt019@umn.edu")
as necessary.
Maintainer: ‘Matt Barry <mrb@softisms.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Barry",
                    role = c("aut", "cre"),
                    email = "mrb@softisms.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Antonio J. Segura <segura.antonioj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Antonio", "J."),
                    family = "Segura",
                    role = c("aut", "cre"),
                    email = "segura.antonioj@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘build_model.coxph.Rd’ ‘build_table.coxph.Rd’ ‘build_table.lm.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cusum_failure.Rd’ ‘cusum_loglike.Rd’ ‘cusum_ome.Rd’ ‘cusum_sprt.Rd’
    ‘paste.R’
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "Reichert", "with", "contributions", "by", "Nele", "Schuwirth"),
                      family = "<nele.schuwirth@eawag.ch>",
                      role = "aut",
                      email = "nele.schuwirth@eawag.ch"),
               person(given = "Peter",
                      family = "Reichert",
                      role = "cre",
                      email = "peter.reichert@emeriti.eawag.ch"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘utility-package.Rd’:
    \keyword{decision analysis; objectives hierarchy;  [TRUNCATED]
Maintainer: ‘Adriano Rivolli <rivolli@utfpr.edu.br>’

The BugReports field in DESCRIPTION has
  https://github.com/rivolli/utiml
which should likely be
  https://github.com/rivolli/utiml/issues
instead.
checkRd: (-1) partition_fold.Rd:21-22: Lost braces
    21 |    \code{train}{The mldr dataset with train examples, that includes all
       |                ^
checkRd: (-1) partition_fold.Rd:23-24: Lost braces
    23 |    \code{test}{The mldr dataset with test examples, defined by the
       |               ^
checkRd: (-1) partition_fold.Rd:25-26: Lost braces
    25 |    \code{validation}{Optionally, only if \code{has.validation = TRUE}.
       |                     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  utiml.Rd: mldr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ben Derrick <ben.derrick@uwe.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Derrick",
                    role = c("aut", "cre"),
                    email = "ben.derrick@uwe.ac.uk")
as necessary.
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Emilio",
                      family = "Gallicchio",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘benchmark_event.R’ ‘benchmark_event.Rd’ ‘benchmark_score.R’
    ‘benchmark_score.Rd’ ‘benchmark_time.R’
    ‘compare_means_between_groups.R’ ‘compare_means_between_groups.Rd’
    ‘compare_means_within_groups.R’ ‘compare_rates_between_groups.R’
    ‘compare_rates_between_groups.Rd’ ‘compare_rates_within_groups.R’
    ‘get_concordant_discordant_pairs.R’
    ‘get_confidence_intervals_within_groups.R’
    ‘table_observed_expected.R’ ‘test_chisq_one.R’ ‘test_chisq_one.Rd’
    ‘test_chisq_two.Rd’ ‘test_fisher.Rd’ ‘test_mcnemar.R’
    ‘test_n_1_prop.R’ ‘test_n_1_prop.Rd’ ‘test_t.R’ ‘test_t_paired.R’
Maintainer: ‘Ron Sielinski <sielinski@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ron",
                    family = "Sielinski",
                    role = c("aut", "cre"),
                    email = "sielinski@hotmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: info@vaers.org
    From: README.md
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: info@vaers.org
    From: README.md
Maintainer: ‘Bruna Wundervald <brunadaviesw@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruna",
                    family = "Wundervald",
                    role = c("aut", "cre"),
                    email = "brunadaviesw@gmail.com")
as necessary.
Maintainer: ‘Han Lin Shang <hanlin.shang@anu.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_surv.Rd’
Maintainer: ‘Sean Wen <sean.wenwx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sean",
                    family = "Wen",
                    role = c("aut", "cre"),
                    email = "sean.wenwx@gmail.com")
as necessary.
Maintainer: ‘Christopher Belanger <christopher.a.belanger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Belanger",
                    role = c("aut", "cre"),
                    email = "christopher.a.belanger@gmail.com")
as necessary.
Maintainer: ‘Greer B. Humphrey <greer.humphrey@student.adelaide.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ar9.Rd’:
    http://dx.doi.org/10.1016/S0022-1694(00)00346-2
  File ‘validann.Rd’:
    http://dx.doi.org/10.1016/j.envsoft.2006.06.008
    http://dx.doi.org/10.1016/j.ecolmodel.2004.03.013
    http://dx.doi.org/10.1016/S0304-3800(02)00257-0
    http://dx.doi.org/10.1109/ijcnn.2006.247166
    http://dx.doi.org/10.5194/hess-17-2827-2013
Found the following files/directories:
  ‘PredValidationPlots.pdf’ ‘RepStructValidationPlots.pdf’
checkRd: (-1) sendTasks.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sendTasks.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  detect_boundary_cat.Rd: validator
  detect_boundary_num.Rd: validator
  detect_fixed_variables.Rd: validator
  detect_infeasible_rules.Rd: validator
  detect_redundancy.Rd: validator
  is_contradicted_by.Rd: validator
  is_implied_by.Rd: validator
  is_linear.Rd: validator
  make_feasible.Rd: validator
  remove_redundancy.Rd: validator
  simplify_conditional.Rd: validator
  simplify_fixed_variables.Rd: validator
  simplify_rules.Rd: validator
  validatetools.Rd: validate
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Benjamin Hivert <benjamin.hivert@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Benjamin",
                    family = "Hivert",
                    role = c("aut", "cre"),
                    email = "benjamin.hivert@u-bordeaux.fr")
as necessary.

The Description field contains
  practical considerations", <arXiv:2210.13172>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Clay Ford <joe.clayton.ford@gmail.com>’

The Description field contains
  were downloaded from https://www.valottery.com/.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.
Maintainer: ‘Jens von Bergmann <jens@mountainmath.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jens",
                    family = "von Bergmann",
                    role = c("aut", "cre"),
                    email = "jens@mountainmath.ca")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘datasets.R’
Maintainer: ‘Guo Yu <gy63@cornell.edu>’

The Description field contains
  Bien (2016) and is available at <https://arxiv.org/abs/1604.07451>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) sample_gen.Rd:18: Lost braces; missing escapes or markup?
    18 | Generate \code{n} random samples from multivariate Gaussian distribution N(0, (L^TL)^{-1})
       |                                                                                      ^
Maintainer: ‘Daniel Safai <danielsafai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Safai",
                    role = c("aut", "cre"),
                    email = "danielsafai@gmail.com")
as necessary.
Maintainer: ‘Piotr Sobczyk <pj.sobczyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Piotr",
                      family = "Sobczyk",
                      role = c("aut", "cre"),
                      email = "pj.sobczyk@gmail.com"),
               person(given = "Stanislaw",
                      family = "Wilczynski",
                      role = "aut"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Malgorzata",
                      family = "Bogdan",
                      role = "aut"))
as necessary.
Maintainer: ‘Edzer Pebesma <edzer.pebesma@uni-muenster.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ernst",
                      family = "Glatzer",
                      role = "aut",
                      email = "ernst.glatzer@wu-wien.ac.at"),
               person(given = "Edzer",
                      family = "Pebesma",
                      role = "cre",
                      email = "edzer.pebesma@uni-muenster.de"))
as necessary.
Maintainer: ‘Martins Liberts <martins.liberts@csb.gov.lv>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘lingini2.Rd’:
    http://dx.doi.org/10.1007/BF03263549
  File ‘varpoord.Rd’:
    http://dx.doi.org/10.1007/BF03263549
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) vardannual.Rd:97: Lost braces
    97 | \item{ID_level2}{Optional}{variable for unit ID codes. One dimensional object convertible to one-column \code{data.table} or variable name as character, column number.}
       |                           ^
checkRd: (-1) vardannual.Rd:99: Lost braces
    99 | \item{dataset}{Optional}{survey data object convertible to \code{data.table}.}
       |                         ^
checkRd: (-1) vardcrospoor.Rd:122: Lost braces
   122 | \item{ind_gr}{Optional}{variable by which divided independently X matrix of the auxiliary variables for the calibration. One dimensional object convertible to one-column \code{data.table} or variable name as character, column number.}
       |                        ^
checkRd: (-1) vardcrospoor.Rd:124: Lost braces
   124 | \item{use.estVar}{Logical}{value. If value is \code{TRUE}, then \code{R} function \code{estVar} is used for the  estimation of covariance matrix of the residuals. If value is \code{FALSE}, then \code{R} function \code{estVar} is not used for the estimation of covariance matrix of the residuals.}
       |                           ^
checkRd: (-1) vardom_othstr.Rd:69: Lost braces
    69 | \item{percentratio}{Positive}{numeric value. All linearized variables are multiplied with \code{percentratio} value, by default - 1.}
       |                              ^
checkRd: (-1) varpoord.Rd:121: Lost braces
   121 | \item{month_at_work}{Variable}{for total number of month at work (sum of the number of months spent at full-time work as employee, number of months spent at part-time work as employee, number of months spent at full-time work as self-employed (including family worker), number of months spent at part-time work as self-employed (including family worker)).  One dimensional object convertible to one-column \code{data.table} or variable name as character, column number.}
       |                               ^
Maintainer: ‘Wenlin Dai <wenlin.dai@kaust.edu.sa>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wenlin",
                      family = "Dai",
                      role = c("aut", "cre"),
                      email = "wenlin.dai@kaust.edu.sa"),
               person(given = "Tiejun",
                      family = "Tong.",
                      role = "aut",
                      email = "tongt@hkbu.edu.sa"))
as necessary.
checkRd: (-1) betaburr.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Burr distribution due to Parana\'{i}ba et al. (2011) given by
       |                                                                                                                        ^
checkRd: (-1) betafrechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Fr\'{e}chet distribution due to Barreto-Souza et al. (2011) given by
       |                                                                                           ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                      ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                                                      ^
checkRd: (-1) kumburr7.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Kumaraswamy Burr XII distribution due to Parana\'{i}ba et al. (2013) given by
       |                                                                                                                                   ^
Maintainer: ‘Sayanti Guha Majumdar <sayanti23gm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sayanti", "Guha"),
                      family = "Majumdar",
                      role = c("aut", "cre"),
                      email = "sayanti23gm@gmail.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = c("Dwijesh", "Chandra"),
                      family = "Mishra",
                      role = "aut"))
as necessary.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jae.", "H."),
                      family = "Kim",
                      role = "aut"),
               person(given = c("Jae", "H."),
                      family = "Kim",
                      role = "cre",
                      email = "jaekim8080@gmail.com"))
as necessary.
checkRd: (-1) simulateDCSIS.Rd:40: Lost braces
    40 |        Y = 6*X1 + 1.5*X2  + 9*1{X12 < 0} + exp(2*X22)*e
       |                                ^
checkRd: (-1) simulateDCSIS.Rd:42: Lost braces
    42 |        Y = 6*X1 + 1.5*X2  + 9*1{X12 < 0} + 6*X22 + e
       |                                ^
Maintainer: ‘David Scott <d.scott@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Scott",
                      role = c("aut", "cre"),
                      email = "d.scott@auckland.ac.nz"),
               person(given = c("Christine", "Yang"),
                      family = "Dong",
                      role = "aut",
                      email = "c.dong@auckland.ac.nz"))
as necessary.
Maintainer: ‘Joshua F. Wiley <josh@elkhartgroup.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joshua", "F."),
                      family = "Wiley",
                      role = c("aut", "cre"),
                      email = "josh@elkhartgroup.com"),
               person(given = c("Elkhart", "Group"),
                      family = "Limited",
                      role = "cph"))
as necessary.
Maintainer: ‘Craig Wang <craig.wang@math.uzh.ch>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) get.miniseq.sample.files.Rd:15: Lost braces
    15 | \item{file.suffix}{Regex expression for end of file name. For example, `file.suffix = '_S\\d{1,2}_.*_R1_.*'` will match R1 files.1 files.}
       |                                                                                             ^
Maintainer: ‘Mohammed Sedki <mohammed.sedki@u-psud.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Marbac",
                      role = "aut"),
               person(given = "Mohammed",
                      family = "Sedki",
                      role = c("aut", "cre"),
                      email = "mohammed.sedki@u-psud.fr"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Michele Dalponte <michele.dalponte@fmach.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michele",
                      family = "Dalponte",
                      role = c("aut", "cre"),
                      email = "michele.dalponte@fmach.it"),
               person(given = c("Hans", "Ole"),
                      family = "Oerka",
                      role = "aut"))
as necessary.
Maintainer: ‘Ramon Diaz-Uriarte <rdiaz02@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ramon",
                    family = "Diaz-Uriarte",
                    role = c("aut", "cre"),
                    email = "rdiaz02@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) randomVarImpsRFplot.Rd:97: Escaped LaTeX specials: \&
checkRd: (-1) varSelImpSpecRF.Rd:83: Escaped LaTeX specials: \&
checkRd: (-1) Acoef_sh.Rd:23: Lost braces; missing escapes or markup?
    23 | The function returns the K-by-K matrices {A_1, ..., A_p} as a list object.
       |                                          ^
checkRd: (-1) VARshrink.Rd:58: Lost braces; missing escapes or markup?
    58 | Consider VAR(p) model: y_t = A_1 y_{t-1} + ... + A_p y_{t-p} + C d_t + e_t,
       |                                    ^
checkRd: (-1) VARshrink.Rd:58: Lost braces; missing escapes or markup?
    58 | Consider VAR(p) model: y_t = A_1 y_{t-1} + ... + A_p y_{t-p} + C d_t + e_t,
       |                                                        ^
Maintainer: ‘WenSui Liu <liuwensui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "WenSui",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwensui@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Jiehuan Sun <jiehuan.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiehuan",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "jiehuan.sun@gmail.com")
as necessary.
Maintainer: ‘Michael Salter-Townshend <mike.saltertownshend@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Salter-Townshend",
                    role = c("aut", "cre"),
                    email = "mike.saltertownshend@gmail.com")
as necessary.
Maintainer: ‘Bo (Yu-Chien) Ning <bo.ning@upmc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bo",
                      family = "Ning",
                      role = "aut",
                      comment = "Yu-Chien"),
               person(given = "Bo",
                      family = "Ning",
                      role = "cre",
                      email = "bo.ning@upmc.fr",
                      comment = "Yu-Chien"))
as necessary.

The Description field contains
  proposed by Ning (2020) <arXiv:2102.00305>. There are two algorithms:
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) decomposition.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |      ^
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |          ^
checkRd: (-1) moving.estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘vineCopulas.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BB1Copula-class.Rd: VineCopula-package, joeCopula-class
  BB1Copula.Rd: joeCopula, VineCopula-package
  BB6Copula-class.Rd: VineCopula-package, joeCopula-class
  BB6Copula.Rd: joeCopula, VineCopula-package
  BB7Copula-class.Rd: VineCopula-package, joeCopula-class
  BB7Copula.Rd: joeCopula, VineCopula-package
  BB8Copula-class.Rd: VineCopula-package, joeCopula-class
  BB8Copula.Rd: joeCopula, VineCopula-package
  BiCop2copula.Rd: copula-class, VineCopula-package, BiCop
  ddCopula.Rd: dCopula, pCopula
  joeBiCopula-class.Rd: VineCopula-package, copula-package,
    joeCopula-class
  joeBiCopula.Rd: copula-package, joeCopula-class, VineCopula-package
  surClaytonCopula-class.Rd: VineCopula-package
  surClaytonCopula.Rd: VineCopula-package
  surGumbelCopula-class.Rd: VineCopula-package
  surGumbelCopula.Rd: VineCopula-package
  tawnT1Copula-class.Rd: VineCopula-package
  tawnT1Copula.Rd: VineCopula-package
  tawnT2Copula-class.Rd: VineCopula-package
  tawnT2Copula.Rd: VineCopula-package
  vineCopula-class.Rd: VineCopula-package, RVineMatrix
  vineCopula.Rd: RVineMatrix, VineCopula-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andre",
                      family = "Schuetzenmeister",
                      role = c("aut", "cre"),
                      email = "andre.schuetzenmeister@roche.com"),
               person(given = "Florian",
                      family = "Dufey",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  lmerMatrices.Rd: lmer
  lmerSummary.Rd: lmer
  remlMM.Rd: lmer
  remlVCA.Rd: lmer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael Friendly <friendly@yorku.ca>’

The BugReports field in DESCRIPTION has
  https://github.com/friendly/vcdExtra
which should likely be
  https://github.com/friendly/vcdExtra/issues
instead.
checkRd: (-1) datasets.Rd:15: Lost braces
    15 | and dimension information (\code{dim} or code{length}) of each item,
       |                                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mcaplot.Rd: multilines
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael Chirico <MichaelChirico4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Chirico",
                    role = c("aut", "cre"),
                    email = "michaelchirico4@gmail.com")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [aut] (<https://orcid.org/0000-0003-2542-2202>), Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>), Daniel Possenriede [aut] (<https://orcid.org/0000-0002-6738-9845>), rOpenSci [fnd] (019jywm96)’
  Authors@R: ‘Scott Chamberlain [aut, cre] (ORCID: <https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [aut] (ORCID: <https://orcid.org/0000-0003-2542-2202>), Maëlle Salmon [aut] (ORCID: <https://orcid.org/0000-0002-2815-0399>), Daniel Possenriede [aut] (ORCID: <https://orcid.org/0000-0002-6738-9845>), rOpenSci [fnd] (ROR: <https://ror.org/019jywm96>)’
File ‘vctrs/libs/vctrs.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘IS_S4_OBJECT’,
    ‘LEVELS’, ‘OBJECT’, ‘PRENV’, ‘PRVALUE’, ‘R_PromiseExpr’,
    ‘Rf_allocSExp’, ‘Rf_findVarInFrame3’, ‘SETLENGTH’, ‘SET_BODY’,
    ‘SET_CLOENV’, ‘SET_ENCLOS’, ‘SET_FORMALS’, ‘SET_GROWABLE_BIT’,
    ‘SET_S4_OBJECT’, ‘SET_TRUELENGTH’, ‘STDVEC_DATAPTR’, ‘STRING_PTR’,
    ‘TRUELENGTH’, ‘UNSET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Anne Le Maitre <anne.le.maitre@univie.ac.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Tropheus.IK.coord.Rd’:
    https://doi.org/10.1038/hdy.2013.78
    https://doi.org/10.5061/dryad.fc02f
  File ‘Tropheus.Rd’:
    https://doi.org/10.5061/dryad.fc02f
    https://doi.org/10.1038/hdy.2013.78
  File ‘relative.eigen.Rd’:
    https://doi.org/10.1007/s11692-013-9260-5
Maintainer: ‘Cody Moore <Jumper9400@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cody",
                    family = "Moore",
                    role = c("aut", "cre"),
                    email = "jumper9400@gmail.com")
as necessary.
Maintainer: ‘Solveig Pospiech <s.pospiech@hzdr.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Solveig",
                    family = "Pospiech",
                    role = c("aut", "cre"),
                    email = "s.pospiech@hzdr.de")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.spv.Rd: stat_binhex, grid.arrange, ggplot
  vdg-package.Rd: theme
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Maintainer: ‘Alexander Yermanos <ayermanos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Yermanos",
                    role = c("aut", "cre"),
                    email = "ayermanos@gmail.com")
as necessary.
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ramon",
                      family = "Durazo-Arvizu",
                      role = "aut"),
               person(given = "Chris",
                      family = "Sempos",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu"))
as necessary.
Maintainer: ‘German Carrillo <geotux_tuxman@linuxmail.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "German",
                    family = "Carrillo",
                    role = c("aut", "cre"),
                    email = "geotux_tuxman@linuxmail.org")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  applyTransformation.Rd: sp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Tunc Oygur <info@tuncoygur.com.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tunc",
                      family = "Oygur",
                      role = c("aut", "cre"),
                      email = "info@tuncoygur.com.tr"),
               person(given = "Gazanfer",
                      family = "Unal",
                      role = "aut"),
               person(given = c("Tarik", "C."),
                      family = "Gouhier",
                      role = "ctb"),
               person(given = "Aslak",
                      family = "Grinsted",
                      role = "ctb"),
               person(given = "Viliam",
                      family = "Simko",
                      role = "ctb"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_pfi.Rd’ ‘plot_pc_directions.Rd’ ‘prep_testing_data.Rd’
    ‘prep_training_data.Rd’
Maintainer: ‘Bob Rudis <bob@rudis.net>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Florian Jansen <florian.jansen@uni-rostock.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Florian",
                    family = "Jansen",
                    role = c("aut", "cre"),
                    email = "florian.jansen@uni-rostock.de")
as necessary.
Maintainer: ‘Robert Nuske <robert.nuske@mailbox.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  count_taxa.Rd: taxlist-class
  make_cocktail.Rd: taxlist-class
  subset.Rd: taxlist-class
  summary.Rd: taxlist-class
  tv2vegtable.Rd: taxlist-class, read.dbf
  used_synonyms.Rd: get_children, get_parents, taxlist-class,
    accepted_name
  vegtable-class.Rd: taxlist-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Andrew A Zaffos <azaffos@email.arizona.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrew", "A."),
                      family = "Zaffos",
                      role = "aut"),
               person(given = c("Andrew", "A"),
                      family = "Zaffos",
                      role = "cre",
                      email = "azaffos@email.arizona.edu"))
as necessary.
checkRd: (-1) additiveBeta.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:33: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Paul Boutros <pboutros@mednet.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanbo",
                      family = "Chen",
                      role = "aut"),
               person(given = "Paul",
                      family = "Boutros",
                      role = "cre",
                      email = "pboutros@mednet.ucla.edu"))
as necessary.
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lee",
                      family = "Wilkinson",
                      role = "aut",
                      email = "leland.wilkinson@gmail.com"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "cre",
                      email = "simon.urbanek@r-project.org"))
as necessary.
Maintainer: ‘Conor Neilson <condwanaland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conor",
                    family = "Neilson",
                    role = c("aut", "cre"),
                    email = "condwanaland@gmail.com")
as necessary.
Maintainer: ‘Nick Golding <nick.golding.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Golding",
                    role = c("aut", "cre"),
                    email = "nick.golding.research@gmail.com")
as necessary.
File ‘versus/libs/versus.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Rishabh Singh<rishabhsinghrsg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rishabh",
                    family = "Singh",
                    role = c("aut", "cre"),
                    email = "rishabhsinghrsg@gmail.com")
as necessary.
Maintainer: ‘Javier Leiva Cuadrado <jleivacuadrado@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Javier", "Leiva"),
                    family = "Cuadrado",
                    role = c("aut", "cre"),
                    email = "jleivacuadrado@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  blobness3D.Rd: nifti
  gradient3D.Rd: nifti
  hessian3D.Rd: nifti
  vesselness3D.Rd: nifti
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) ex121.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex124.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex125.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex127.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex32.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex33.Rd:18: Escaped LaTeX specials: \&
File ‘vetr/libs/vetr.so’:
  Found non-API calls to R: ‘ENCLOS’, ‘FORMALS’, ‘IS_S4_OBJECT’,
    ‘R_lsInternal’, ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Dian Li <lidian@zju.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tobias",
                      family = "Elze",
                      role = "aut"),
               person(given = "Dian",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lidian@zju.edu.cn",
                      comment = "documentation"),
               person(given = c("Eun", "Young"),
                      family = "Choi",
                      role = "aut",
                      comment = "QC"))
as necessary.
Maintainer: ‘Sarah Goslee <Sarah.Goslee@ars.usda.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arnaud",
                    family = "Le Rouzic",
                    role = c("aut", "cre"),
                    email = "arnaud.le-rouzic@universite-paris-saclay.fr")
as necessary.
Maintainer: ‘Adam T. Kocsis <adam.t.kocsis@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/adamkocsis/via
which should likely be
  https://github.com/adamkocsis/via/issues
instead.
checkRd: (-1) VirtualArray-single-bracket-method.Rd:6: Lost braces
     6 | \title{Indexing to extract subsets of a 'code{\link[via:XArray-class]{VirtualArray}}'-class object}
       |                                              ^
checkRd: (-1) subset.Rd:20: Lost braces
    20 | \item{drop}{\code{logical} in case the result of subsetting is a single element, should the \\code{\link[via:XArray-class]{VirtualArray}} wrapper be dropped?}
       |                                                                                                   ^
checkRd: (-1) vic_param.Rd:311: Lost braces
   311 | albedo must be supplied in code{forcing_veg}. Default = 1.}
       |                                ^
checkRd: (-1) vic_param.Rd:323: Lost braces
   323 | supplied in code{forcing_veg}. Default = 1.}
       |                 ^
checkRd: (-1) vic_param.Rd:341: Lost braces
   341 | be supplied in code{forcing_veg} Default = 0.}
       |                    ^
Maintainer: ‘Donald Williams <drwwilliams@ucdavis.edu>’

The Description field contains
  variance in a one-way random effects model <10.31234/osf.io/hpq7w>.
Please write DOIs as <doi:prefix/suffix>.
checkRd: (-1) vietnamcode.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:16: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘functions_upload.R’ ‘mod_hidecan.R’
Maintainer: ‘Joseph de Vilmarest <joseph.de-vilmarest@vikingconseil.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "de Vilmarest",
                    role = c("aut", "cre"),
                    email = "joseph.de-vilmarest@vikingconseil.fr",
                    comment = c(ORCID = "0000-0002-0634-8484"))
as necessary.
Maintainer: ‘Zhicheng Du <dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhicheng",
                    family = "Du",
                    role = c("aut", "cre"),
                    email = "dgdzc@hotmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bootstrap_se.Rd: boot
  cv_vim.Rd: boot
  vim.Rd: boot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  regressionImp.Rd: lmrob, glmrob
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jefferson Paril <jeffersonparil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jefferson",
                    family = "Paril",
                    role = c("aut", "cre"),
                    email = "jeffersonparil@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Scott Sherrill-Mix <ssm@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Scott",
                      family = "Sherrill-Mix",
                      role = c("aut", "cre"),
                      email = "ssm@msu.edu"),
               person(given = "Erik",
                      family = "Clarke",
                      role = "aut"))
as necessary.
Maintainer: ‘Brandon M. Greenwell <greenwell.brandon@gmail.com>’

The Description field contains
  described in Greenwell et al. (2018) <arXiv:1805.04755>. A
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Ranjit", "Kumar"),
                      family = "Paul",
                      role = c("aut", "cre"),
                      email = "ranjitstat@gmail.com"),
               person(given = c("Mr.", "Ankit"),
                      family = "Tanwar",
                      role = "aut"))
as necessary.

The Description field contains
  <doi.org/10.1016/j.eneco.2012.03.003>.
Please write DOIs as <doi:prefix/suffix>.
checkRd: (-1) viridis.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:24-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:31-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePopulation.Rd:75: Lost braces; missing escapes or markup?
    75 |   \item \strong{Pollen productivity}: In each time step the model computes the pollen productivity (in relative values) of the population using the equation \eqn{P_{t} = \sum x_{it} \times max(S_{t}, B)}, where \emph{t} is time (a given simulation time step), \emph{P} is the pollen productivity of the population at a given time, \emph{x_{i}} represents the biomass of every adult individual, \emph{S} is the environmental suitability at the given time, \emph{B} is the contribution of biomass to pollen productivity regardless of environmental suitability (\emph{pollen.control} parameter in the simulation, 0 by default). If \emph{B} equals 1, \emph{P} is equal to the total biomass sum of the adult population, regardless of the environmental suitability. If \emph{B} equals 0, pollen productivity depends entirely on environmental suitability values.
       |                                                                                                                                                                                                                                                                                                                                                    ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  parametersCheck.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Boris Leroy <leroy.boris@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boris",
                      family = "Leroy",
                      role = c("cre", "aut"),
                      email = "leroy.boris@gmail.com"),
               person(given = c("Christine", "N."),
                      family = "Meynard",
                      role = "ctb"),
               person(given = "Celine",
                      family = "Bellard",
                      role = "ctb"),
               person(given = "Franck",
                      family = "Courchamp",
                      role = "ctb"),
               person(given = "Robin",
                      family = "Delsol",
                      role = "ctb"),
               person(given = "Willson",
                      family = "Gaul",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  virtualspecies-package.Rd: terra, ade4, rnaturalearth
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) compdesc.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) ViSiElse.Rd:101-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:104: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:105-106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:108-127: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:112-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:114-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:116: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:128-134: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:135-147: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:148-157: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:152-153: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:154-155: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dim-ViSibook-methods.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dim-ViSibook-methods.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary-ViSigrid-methods.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary-ViSigrid-methods.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Chenguang Wang <cwang68@jhmi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zilu",
                      family = "Wang",
                      role = c("cph", "aut"),
                      comment = "tools/make_cpp.R, R/stanmodels.R"),
               person(given = "Chenguang",
                      family = "Wang",
                      role = "cre",
                      email = "cwang68@jhmi.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  visSave.Rd: saveWidget
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Patrick Breheny <patrick-breheny@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patrick",
                      family = "Breheny",
                      role = c("aut", "cre"),
                      email = "patrick-breheny@uiowa.edu"),
               person(given = "Woodrow",
                      family = "Burchett",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘vistla/libs/vistla.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcelo",
                    family = "Ponce",
                    role = c("aut", "cre"),
                    email = "m.ponce@utoronto.ca")
as necessary.
Maintainer: ‘David J. Sharrow <dsharrow@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregor",
                      family = "Passolt",
                      role = "aut"),
               person(given = c("James", "J."),
                      family = "Anderson",
                      role = "aut"),
               person(given = "Ting",
                      family = "Li",
                      role = "aut"),
               person(given = c("David", "H."),
                      family = "Salinger",
                      role = "aut"),
               person(given = c("David", "J."),
                      family = "Sharrow",
                      role = c("aut", "cre"),
                      email = "dsharrow@uw.edu"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) getTurnType.Rd:38: Lost braces; missing escapes or markup?
    38 | Return one of {Vocalisation, GrpVocalisation, ...} or identifier.
       |               ^
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Carlo Pacioni <C.Pacioni@Murdoch.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘campbell.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
  File ‘pac.clas.Nadults.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.clas.Ne.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.clas.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.clas.lookup.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.clas.pairw.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.lhs.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.run.lhs.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.yr.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pacioni.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘sta.evy5.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
  File ‘sta.evy5.b11.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
  File ‘sta.main.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
  File ‘vortexRdata.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
    https://doi.org/10.1071/PC17002
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    vortexRdata pre-1.0.3
Maintainer: ‘Bryan Gertzel <bryan.gertzel@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bryan",
                      family = "Gertzel",
                      role = c("aut", "cre"),
                      email = "bryan.gertzel@anu.edu.au"),
               person(given = "Robert",
                      family = "Ackland",
                      role = "aut"))
as necessary.
Unknown package ‘rtweet’ in Rd xrefs
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.
Maintainer: ‘Michael Gampmayer <michael.gampmayer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Gampmayer",
                    role = c("aut", "cre"),
                    email = "michael.gampmayer@gmail.com")
as necessary.
Maintainer: ‘Tyler Kendall <tsk@uoregon.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tyler",
                      family = "Kendall",
                      role = c("aut", "cre"),
                      email = "tsk@uoregon.edu"),
               person(given = c("Erik", "R."),
                      family = "Thomas",
                      role = "aut"))
as necessary.
checkRd: (-1) compute.means.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) norm.wattfabricius.Rd:5: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Ron Keizer <ronkeizer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ron",
                    family = "Keizer",
                    role = c("aut", "cre"),
                    email = "ronkeizer@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ctd_cast.Rd: ctdFindProfiles
  vpr_manual_classification.Rd: image_scale
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘vroom/libs/vroom.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘SETLENGTH’, ‘SET_TRUELENGTH’,
    ‘STDVEC_DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "H."),
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jaekim8080@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  vscc.Rd: teigen, Mclust
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  vsd.Rd: ggplot2, Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Philippe Regnault <philipperegnault@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Justine",
                      family = "Lequesne",
                      role = "aut"),
               person(given = "Philippe",
                      family = "Regnault",
                      role = c("aut", "cre"),
                      email = "philipperegnault@hotmail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  VSOLassoBag.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Karolina Klockmann <karolina.klockmann@gmx.de>’

The Description field contains
  (Klockmann, Krivobokova; 2023), <arXiv:2303.10018>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) Data-Examples.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aquaporin.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vsts_create_release.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vsts_create_release.Rd:34: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  VSURF.Rd: randomForest
  VSURF_interp.Rd: randomForest
  VSURF_pred.Rd: randomForest
  VSURF_thres.Rd: randomForest
  predict.VSURF.Rd: randomForest, predict.randomForest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andreas",
                      family = "Schulz",
                      role = "cre",
                      email = "ades-s@web.de"),
               person(family = "PhD",
                      role = c("aut", "cre")))
as necessary.
Maintainer: ‘Csaba Farago <farago@inf.u-szeged.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Csaba",
                    family = "Farago",
                    role = c("aut", "cre"),
                    email = "farago@inf.u-szeged.hu")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Ronan Trépos <ronan.trepos@inrae.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Allard",
                      role = c("aut", "cre")),
               person(given = "Ronan",
                      family = "Trépos",
                      role = c("aut", "cre"),
                      email = "ronan.trepos@inrae.fr"))
as necessary.
checkRd: (-1) WACS.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACSreadAgroclim.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WACSreadAgroclim.Rd:16-17: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘John Whalen <whalenjf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Whalen",
                    role = c("aut", "cre"),
                    email = "whalenjf@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘walkscore.R’
Maintainer: ‘Paul F. Blanche <paulfblanche@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "F"),
                      family = "Blanche",
                      role = "aut",
                      email = "paulfblanche@gmail.com"),
               person(given = c("Thomas", "A."),
                      family = "Gerds",
                      role = "aut",
                      email = "tag@biostat.ku.dk"),
               person(given = c("Paul", "F."),
                      family = "Blanche",
                      role = "cre",
                      email = "paulfblanche@gmail.com"))
as necessary.
Maintainer: ‘Jonathon Love <jon@thon.cc>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathon",
                      family = "Love",
                      role = c("aut", "cre"),
                      email = "jon@thon.cc"),
               person(given = "Patrick",
                      family = "Mair",
                      role = "aut"))
as necessary.
Maintainer: ‘Harvinder Singh <harvindermaan4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Harvinder",
                    family = "Singh",
                    role = c("aut", "cre"),
                    email = "harvindermaan4@gmail.com")
as necessary.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Maintainer: ‘Emilie Devijver <emilie.devijver@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emilie",
                      family = "Devijver",
                      role = c("aut", "cre"),
                      email = "emilie.devijver@kuleuven.be"),
               person(given = "Gerda",
                      family = "Claeskens",
                      role = "aut"),
               person(given = "Irene",
                      family = "Gijbels",
                      role = "aut"))
as necessary.
File ‘warp/libs/warp.so’:
  Found non-API calls to R: ‘OBJECT’, ‘Rf_findVarInFrame3’,
    ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Andrea Venturini <andrea.venturini@bancaditalia.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Venturini",
                    role = c("aut", "cre"),
                    email = "andrea.venturini@bancaditalia.it")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘flextable.R’ ‘washi_flextable.Rd’ ‘washi_scale.Rd’ ‘washi_theme.Rd’
'::' or ':::' import not declared from: ‘NPRED’
'library' or 'require' call not declared from: ‘NPRED’
Maintainer: ‘Karen R. Ryberg <kryberg@usgs.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Karen", "R."),
                      family = "Ryberg",
                      role = c("aut", "cre"),
                      email = "kryberg@usgs.gov"),
               person(given = c("Aldo", "V."),
                      family = "Vecchia",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotParam.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  waterfallchart.Rd: barchart, bwplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Hugh Parsonage <hugh.parsonage+waterfall@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hugh",
                    family = "Parsonage",
                    role = c("aut", "cre"),
                    email = "hugh.parsonage+waterfall@gmail.com")
as necessary.
Maintainer: ‘Michael Stewart <michael.stewart@sydney.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Raimondo",
                      role = "aut",
                      email = "marcr@maths.usyd.edu.au"),
               person(given = "Michael",
                      family = "Stewart",
                      role = c("aut", "cre"),
                      email = "michael.stewart@sydney.edu.au"))
as necessary.
Maintainer: ‘Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Ranjit", "Kumar"),
                      family = "Paul",
                      role = c("aut", "cre"),
                      email = "ranjitstat@gmail.com"),
               person(given = "Sandipan",
                      family = "Samanta",
                      role = "aut"),
               person(given = "Ankit",
                      family = "Tanwar",
                      role = "aut"))
as necessary.
Maintainer: ‘Eric Aldrich <ealdrich@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eric",
                    family = "Aldrich",
                    role = c("aut", "cre"),
                    email = "ealdrich@gmail.com")
as necessary.
Maintainer: ‘Olivia Cheronet <cheronetolivia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olivia",
                      family = "Cheronet",
                      role = c("aut", "cre"),
                      email = "cheronetolivia@gmail.com"),
               person(given = c("John", "A."),
                      family = "Finarelli",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘ReconstructedData.txt’ ‘ReconstructedDataStDev.txt’
  ‘ResampledReconstructions.txt’
  ‘ResampledReconstructionsStandardVariation.txt’
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brandon",
                    family = "Whitcher",
                    role = c("aut", "cre"),
                    email = "bwhitcher@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Vicente J. Bolos <vicente.bolos@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vicente", "J."),
                      family = "Bolos",
                      role = c("aut", "cre"),
                      email = "vicente.bolos@uv.es"),
               person(given = "Rafael",
                      family = "Benitez",
                      role = "aut"))
as necessary.
Maintainer: ‘Pablo Rodríguez-Sánchez <pablo.rodriguez.sanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pablo",
                    family = "Rodríguez-Sánchez",
                    role = c("aut", "cre"),
                    email = "pablo.rodriguez.sanchez@gmail.com")
as necessary.
Maintainer: ‘David Preinerstorfer <david.preinerstorfer@ulb.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Preinerstorfer",
                    role = c("aut", "cre"),
                    email = "david.preinerstorfer@ulb.be")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Heteroskedasticity Robust Tests?" <arXiv:2005.04089>. This diagnostic
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jesse Piburn <piburnjo@ornl.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Karolos Korkas <kkorkas@yahoo.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karolos",
                      family = "Korkas",
                      role = c("aut", "cre"),
                      email = "kkorkas@yahoo.co.uk"),
               person(given = "Piotr",
                      family = "Fryzlewicz",
                      role = "aut"))
as necessary.
Maintainer: ‘Sarah Rathwell <srathwel@ualberta.ca>’

The BugReports field in DESCRIPTION has
  https://github.com/sarah-0k/wcep
which should likely be
  https://github.com/sarah-0k/wcep/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wcep.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  WCE.Rd: coxph.control
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ujjwal Singh <ujjwalrsmt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ujjwal", "Singh", "Prashant", "K", "Srivastava", "<prashant.just@gmail.com)>", "Dharmendra", "Kumar", "Pandey", "<Dkp@sac.isro.gov.in>", "Sumit", "Kumar", "Chaudhary", "<sumit.mathe@gmail.com>", "Dileep", "Kumar", "Gupta"),
                      family = "<dileepgupta85@gmail.com>",
                      role = "aut",
                      email = "dileepgupta85@gmail.com"),
               person(given = "Ujjwal",
                      family = "Singh",
                      role = "cre",
                      email = "ujjwalrsmt@gmail.com"))
as necessary.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get_wis_raster_layer.Rd: get_map_layer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Brooke Anderson <brooke.anderson@colostate.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) get_cid.Rd:58-59: Lost braces
    58 | <structure search> is assembled as "{\code{substructure} |
       |                                     ^
checkRd: (-1) get_cid.Rd:59-60: Lost braces
    59 | \code{superstructure} | \code{similarity} | \code{identity}} / {\code{smiles}
       |                                                                ^
checkRd: (-1) get_cid.Rd:70-71: Lost braces
    70 | "{\code{fastidentity} | \code{fastsimilarity_2d} | \code{fastsimilarity_3d} |
       |  ^
checkRd: (-1) get_cid.Rd:71-72: Lost braces
    71 | \code{fastsubstructure} | \code{fastsuperstructure}}/{\code{smiles} |
       |                                                      ^
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ariya",
                      family = "Hidayat",
                      role = "aut"),
               person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "Gabor",
                      family = "Torok",
                      role = "aut"),
               person(given = "Ivan",
                      family = "De Marino",
                      role = "aut"),
               person(given = "Robert",
                      family = "Gieseke",
                      role = "aut"),
               person(given = "Steven",
                      family = "Masala",
                      role = "aut"),
               person(given = "Winston",
                      family = "Chang",
                      role = "aut"),
               person(given = "Zack",
                      family = "Weinberg",
                      role = "aut"))
as necessary.
checkRd: (-1) Session.Rd:146: Lost braces
   146 | sQuote{page load} timeout specifies a time to wait for the page loading
       |       ^
Maintainer: ‘Richard Barnes <rijard.barnes@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/r-barnes/webglobe/
which should likely be
  https://github.com/r-barnes/webglobe/issues
instead.
Author field differs from that derived from Authors@R
  Author:    ‘Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [ctb] (<https://orcid.org/0000-0003-2542-2202>), rOpenSci [fnd] (019jywm96)’
  Authors@R: ‘Scott Chamberlain [aut, cre] (ORCID: <https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [ctb] (ORCID: <https://orcid.org/0000-0003-2542-2202>), rOpenSci [fnd] (ROR: <https://ror.org/019jywm96>)’
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Winston Chang [aut, cre], Barret Schloerke [ctb] (<https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Winston Chang [aut, cre], Barret Schloerke [ctb] (ORCID: <https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Maintainer: ‘Jodi Beggs <jodi@alum.mit.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rense Nieuwenhuis <rense.nieuwenhuis@sofi.su.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rense",
                      family = "Nieuwenhuis",
                      role = c("aut", "cre"),
                      email = "rense.nieuwenhuis@sofi.su.se"),
               person(given = c("Manfred", "te"),
                      family = "Grotenhuis",
                      role = "aut"),
               person(given = "Ben",
                      family = "Pelzer",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Schmidt",
                      role = "aut"),
               person(given = "Ruben",
                      family = "Konig",
                      role = "aut"),
               person(given = "Rob",
                      family = "Eisinga",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) busTrace.Rd:15: Lost braces
    15 | /href{https://crawdad.org/coppe-ufrj/RioBuses/20180319/}
       |      ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘Cyrill Scheidegger <cyrill.scheidegger@stat.math.ethz.ch>’

The Description field contains
  Measure" <arXiv:2111.04361>. The test is a generalisation of the
  Testing and the Generalised Covariance Measure" <arXiv:1804.07203>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
checkRd: (-1) WeightedROC.Rd:10: Lost braces; missing escapes or markup?
    10 | integer/numeric with values all in {0=negative,1=positive} or
       |                                    ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
    11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
       | ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
    11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
       |                            ^
Maintainer: ‘Aristidis K. Nikoloulopoulos <a.nikoloulopoulos@uea.ac.uk>’

The Description field contains
  <arXiv:1510.07376>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) CLIC.Rd:149: Lost braces
   149 | Composite likelihood {E}{M} algorithm with applications to
       |                         ^
Maintainer: ‘Viviane Philipps <Viviane.Philipps@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Viviane",
                    family = "Philipps",
                    role = c("aut", "cre"),
                    email = "viviane.philipps@u-bordeaux.fr")
as necessary.
Maintainer: ‘Josh Pasek <josh@joshpasek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Josh",
                      family = "Pasek",
                      role = c("aut", "cre"),
                      email = "josh@joshpasek.com"),
               person(given = c("with", "some", "assistance", "from", "Alex"),
                      family = "Tahk"),
               person(given = c("some", "code", "modified", "from", "R-core;", "Additional", "contributions", "by", "Gene"),
                      family = "Culter"),
               person(given = "Marcus",
                      family = "Schwemmle."))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotwtdinteraction.Rd: mice, gam, bam
  wpct.Rd: wtd.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘William Asquith <william.asquith@ttu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "William",
                    family = "Asquith",
                    role = c("aut", "cre"),
                    email = "william.asquith@ttu.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Pablo J. Villacorta <pjvi@decsai.ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pablo", "J."),
                    family = "Villacorta",
                    role = c("aut", "cre"),
                    email = "pjvi@decsai.ugr.es")
as necessary.
Maintainer: ‘Marco Colombo <mar.colombo13@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Han Yu <hyu9@buffalo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Han",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "hyu9@buffalo.edu"),
               person(given = c("Rachael", "Hageman"),
                      family = "Blair",
                      role = "aut"))
as necessary.
Maintainer: ‘Zihuai He <zihuai@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@stanford.edu")
as necessary.
Maintainer: ‘Soubhik Barari <soubhikbarari@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Heather",
                      family = "Stoll",
                      role = "aut",
                      email = "hstoll@polsci.ucsb.edu"),
               person(given = "Gary",
                      family = "King",
                      role = "aut",
                      email = "king@harvard.edu"),
               person(given = "Langche",
                      family = "Zeng",
                      role = "aut",
                      email = "zeng@ucsd.edu"),
               person(given = "Christopher",
                      family = "Gandrud",
                      role = "aut",
                      email = "zelig.zee@gmail.com"),
               person(given = "Ben",
                      family = "Sabath",
                      role = "aut"),
               person(given = "Soubhik",
                      family = "Barari",
                      role = "cre",
                      email = "soubhikbarari@gmail.com"))
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Major changes
    Minor changes
Maintainer: ‘Julian Kohne <julian.kohne@gesis.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julian",
                    family = "Kohne",
                    role = c("aut", "cre"),
                    email = "julian.kohne@gesis.org")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_network.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘coords_from_words.R’ ‘get_available_languages.R’
    ‘words_from_coords.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_characteristics.Rd’ ‘define_instances.Rd’ ‘export.R’
    ‘generate_table.Rd’ ‘get_attribute_definition_function.Rd’
    ‘get_day_part.Rd’ ‘get_level_attribute_names.Rd’ ‘get_level_names.Rd’
    ‘get_table.Rd’ ‘get_table_attribute_names.Rd’ ‘get_table_csv.Rd’
    ‘get_table_rdb.Rd’ ‘get_table_xlsx.Rd’ ‘select_date_levels.Rd’
    ‘select_day_level.Rd’ ‘select_month_level.Rd’
    ‘select_quarter_level.Rd’ ‘select_semester_level.Rd’
    ‘select_time_level.Rd’ ‘select_week_level.Rd’ ‘select_year_level.Rd’
    ‘set_attribute_definition_function.Rd’ ‘set_day_part.Rd’
    ‘set_table_attribute_names.Rd’ ‘week.R’
Maintainer: ‘Edwin de Jonge <edwindjonge@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edwin",
                    family = "de Jonge",
                    role = c("aut", "cre"),
                    email = "edwindjonge@gmail.com")
as necessary.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Korbinian",
                      family = "Strimmer",
                      role = c("aut", "cre"),
                      email = "strimmerlab@gmail.com"),
               person(given = "Takoua",
                      family = "Jendoubi",
                      role = "aut"),
               person(given = "Agnan",
                      family = "Kessy",
                      role = "aut"),
               person(given = "Alex",
                      family = "Lewin",
                      role = "aut"))
as necessary.
Maintainer: ‘Jorge Lopez Perez <jorge@loperez.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  download_img_data.Rd: img_data
  smooth_hist.Rd: gam
  whitestripe_ind_to_mask.Rd: writeNIfTI
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Bhaskar Karambelkar <bhaskarvk@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: rmarkdown.rstudio.com
    From: inst/doc/Using_widgetframe.html
  URI: yihui.name/knitr/
    From: inst/doc/Using_widgetframe.html
Maintainer: ‘Joerg grosse Schlarmann (aka Produnis) <schlarmann@produnis.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joerg", "grosse"),
                    family = "Schlarmann",
                    role = c("aut", "cre"),
                    email = "schlarmann@produnis.de",
                    comment = "aka Produnis")
as necessary.
checkRd: (-1) get_geo_box.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:29-30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:33-34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) milakes.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Brock",
                      family = "Tilbert",
                      role = "ctb"),
               person(given = "Clemens",
                      family = "Schmid",
                      role = "aut"))
as necessary.
Maintainer: ‘Bradley Shanrock-Solberg <greblosb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bradley",
                    family = "Shanrock-Solberg",
                    role = c("aut", "cre"),
                    email = "greblosb@gmail.com")
as necessary.
checkRd: (-1) secondDerivative.Rd:14: Lost braces
    14 | This must be a function of the form FUN <- function(x, ...){...}
       |                                                            ^
checkRd: (-1) windAC.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) windAC.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) windAC.Rd:33: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Neeraj Bokde <neerajdhanraj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Neeraj",
                      family = "Bokde",
                      role = c("aut", "cre"),
                      email = "neerajdhanraj@gmail.com"),
               person(given = "Andres",
                      family = "Feijoo",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Novica Nakov <nnovica@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/windsor-ai/windsoraiR/
which should likely be
  https://github.com/windsor-ai/windsoraiR/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘general_gd.R’ ‘plot_gd.R’ ‘window_gd.R’
Maintainer: ‘Kevin Duarte <k.duarte@chru-nancy.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Duarte",
                      role = c("aut", "cre"),
                      email = "k.duarte@chru-nancy.fr"),
               person(given = c("Joao", "Pedro"),
                      family = "Ferreira",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘WinRatio-package.Rd’:
    https://doi.org/10.1093/eurheartj/ehr352
    https://doi.org/10.1093/biostatistics/kxv032
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotComb.Rd: hdi
  plot_Bwiqid.Rd: postPlot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Robert W. Cort <rcorty@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "W."),
                    family = "Cort",
                    role = c("aut", "cre"),
                    email = "rcorty@gmail.com")
as necessary.
Maintainer: ‘Ian Cook <ianmcook@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("TIBCO", "Software"),
                      family = "Inc.",
                      role = "aut"),
               person(given = "Ian",
                      family = "Cook",
                      role = "cre",
                      email = "ianmcook@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wkt_plot.Rd: wkt, wkb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Wencan Zhu <wencan.zhu@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wencan",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "wencan.zhu@yahoo.com")
as necessary.
Maintainer: ‘Ilana Trumble <ilana.trumble@cuanschutz.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ilana",
                      family = "Trumble",
                      role = c("aut", "cre"),
                      email = "ilana.trumble@cuanschutz.edu"),
               person(given = "Orlando",
                      family = "Ferrer",
                      role = "aut"),
               person(given = "Camden",
                      family = "Bay",
                      role = "aut"),
               person(given = "Katie",
                      family = "Mollan",
                      role = "aut"))
as necessary.

The Description field contains
  <doi:10.1080/10543406.2020.1730866> <arXiv:1901.04597>, (Mann and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Shahla Faisal <shahla_ramzan@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shahla",
                    family = "Faisal",
                    role = c("aut", "cre"),
                    email = "shahla_ramzan@yahoo.com")
as necessary.
Maintainer: ‘Jeffrey B. Lewis <jblewis@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Keith",
                      family = "Poole",
                      role = "aut",
                      email = "ktpoole@uga.edu"),
               person(given = "Jeffrey",
                      family = "Lewis",
                      role = "aut",
                      email = "jblewis@ucla.edu"),
               person(given = "James",
                      family = "Lo",
                      role = "aut",
                      email = "lojames@usc.edu"),
               person(given = "Royce",
                      family = "Carroll",
                      role = "aut",
                      email = "rcarroll@rice.edu"),
               person(given = c("Jeffrey", "B."),
                      family = "Lewis",
                      role = "cre",
                      email = "jblewis@ucla.edu"))
as necessary.
Maintainer: ‘Thilo Eichenberg <te.r@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thilo",
                    family = "Eichenberg",
                    role = c("aut", "cre"),
                    email = "te.r@gmx.net")
as necessary.
Maintainer: ‘Sudarson Mothilal Thoppay <sudarson@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sudarson", "Mothilal"),
                    family = "Thoppay",
                    role = c("aut", "cre"),
                    email = "sudarson@outlook.com")
as necessary.
Maintainer: ‘Samuel I. Berchuck <sib2@duke.edu>’

The Description field contains
  Berchuck et al (2018), <arXiv:1805.11636>. The paper is in press at the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  WoodburyMatrix-class.Rd: Matrix-class, symmetricMatrix-class
  solve-methods.Rd: Matrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

The Description field contains
  at <arXiv:1310.4546>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) word2vec_similarity.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) word2vec_similarity.Rd:31: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Neda Daneshgar<ne_da978@stu-mail.um.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Neda",
                      family = "Daneshagr",
                      role = "aut"),
               person(given = "Majid",
                      family = "Sarmad.",
                      role = "aut"),
               person(given = "Neda",
                      family = "Daneshgar",
                      role = "cre",
                      email = "ne_da978@stu-mail.um.ac.ir"))
as necessary.
Maintainer: ‘Dawei Lang <chiffonlang@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dawei",
                      family = "Lang",
                      role = c("aut", "cre"),
                      email = "chiffonlang@icloud.com"),
               person(given = "Guan-tin",
                      family = "Chien",
                      role = "aut"))
as necessary.
Maintainer: ‘Ian Fellows <ian@fellstat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ian",
                    family = "Fellows",
                    role = c("aut", "cre"),
                    email = "ian@fellstat.com")
as necessary.
Maintainer: ‘Jonathan Bratt <jonathan.bratt@macmillan.com>’

The Description field contains
  Apply 'Wordpiece' (<arXiv:1609.08144>) tokenization to input text,
  given an appropriate vocabulary. The 'BERT' (<arXiv:1810.04805>)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) wordpiece_cache_dir.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wordpiece_cache_dir.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wordpiece_cache_dir.Rd:20-21: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘TWP.Rd’
'library' or 'require' call not declared from: ‘shiny’
Maintainer: ‘Tomas Hovorka <tomashovorka@seznam.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tomas",
                    family = "Hovorka",
                    role = c("aut", "cre"),
                    email = "tomashovorka@seznam.cz")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DSM_TermContextMatrix.Rd: dgCMatrix-class
  as_distmat.Rd: sparseMatrix
  dsm.Rd: sparseMatrix-class, dMatrix-class
  dsm_canonical_matrix.Rd: dgTMatrix-class, dgCMatrix-class,
    denseMatrix-class
  dsm_projection.Rd: sparsesvd
  rsvd.Rd: sparsesvd
  signcount.Rd: Matrix, dgeMatrix-class, dgCMatrix-class,
    dgRMatrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wflow_build.Rd: rmarkdown
  wflow_git_commit.Rd: git2r
  wflow_git_config.Rd: git2r
  wflow_git_pull.Rd: git2r
  wflow_git_push.Rd: git2r
  wflow_post_knit.Rd: rmarkdown
  wflow_pre_knit.Rd: rmarkdown
  wflow_pre_processor.Rd: rmarkdown
  wflow_remove.Rd: git2r
  wflow_rename.Rd: git2r
  wflow_start.Rd: git2r
  wflow_status.Rd: git2r
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Neil A. Weiss <neil.a.weiss@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Neil", "A."),
                    family = "Weiss",
                    role = c("aut", "cre"),
                    email = "neil.a.weiss@asu.edu")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘wPerm-package.Rd’:
    \keyword{ package, datasets, graphs }
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = "Patrick",
                      family = "Gerland",
                      role = "aut",
                      email = "gerland@un.org"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = "Patrick",
                      family = "Gerland",
                      role = "aut",
                      email = "gerland@un.org"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu",
                      comment = "hanas@uw.edu"),
               person(given = "Patrick",
                      family = "Gerland",
                      role = "aut",
                      comment = "gerland@un.org"),
               person(given = "Kirill",
                      family = "Andreev",
                      role = "aut",
                      comment = "andreev@un.org"),
               person(given = "Nan",
                      family = "Li",
                      role = "aut",
                      comment = "li32@un.org"),
               person(given = "Danan",
                      family = "Gu",
                      role = "aut",
                      comment = "gud@un.org"),
               person(given = "Thomas",
                      family = "Spoorenberg",
                      role = "aut",
                      comment = "spoorenberg@un.org"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("United", "Nations", "Population"),
                      family = "Division",
                      role = "aut"),
               person(given = "Hana",
                      family = "Sevcikova",
                      role = "cre",
                      email = "hanas@uw.edu"))
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("United", "Nations", "Population"),
                      family = "Division",
                      role = "aut"),
               person(given = "Hana",
                      family = "Sevcikova",
                      role = "cre",
                      email = "hanas@uw.edu"))
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hana",
                    family = "Sevcikova",
                    role = c("aut", "cre"),
                    email = "hanas@uw.edu")
as necessary.
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Mao",
                      role = c("aut", "cre"),
                      email = "lmao@biostat.wisc.edu"),
               person(given = "Tuo",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rezgar", "Arabzadeh;", "Parisa", "Aberi;", "Kaveh", "Panaghi;", "Shahab", "Araghinejad;", "Majid"),
                      family = "Montaseri",
                      role = "aut"),
               person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = "cre",
                      email = "rezgararabzadeh@ut.ac.ir"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) createDemandSite.Rd:26: Lost braces
    26 |   \item{suppliers}{(optional) A list of object(s) inherited from the folowing classes: \code{\link[WRSS]{createAquifer}}, \code{\link[WRSS]{createRiver}}, \code{\link[WRSS]{createReservoir}}, code{\link[WRSS]{createDiversion}}.}
       |                                                                                                                                                                                                     ^
checkRd: (-1) createDemandSite.base.Rd:26: Lost braces
    26 |   \item{suppliers}{(optional) A list of object(s) inherited from the folowing classes: \code{\link[WRSS]{createAquifer}}, \code{\link[WRSS]{createRiver}}, \code{\link[WRSS]{createReservoir}}, code{\link[WRSS]{createDiversion}}.}
       |                                                                                                                                                                                                     ^
checkRd: (-1) createDemandSite.default.Rd:32: Lost braces
    32 |   \item{suppliers}{(optional) A list of object(s) inherited from the folowing classes: \code{\link[WRSS]{createAquifer}}, \code{\link[WRSS]{createRiver}}, \code{\link[WRSS]{createReservoir}}, code{\link[WRSS]{createDiversion}}.}
       |                                                                                                                                                                                                     ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Rui Sun <rsunzju@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rui",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "rsunzju@gmail.com"),
               person(given = c("Maggie", "Haitian"),
                      family = "Wang",
                      role = "aut"))
as necessary.
checkRd: (-1) wtest.Rd:61-64: Lost braces
    61 | {When \code{w.order} =2, the \code{wtest()} will automatically calculate the main effect first and then do a pre-filter before calculating interactions.
       | ^
checkRd: (-1) wtest.high.Rd:61-64: Lost braces
    61 | {When \code{w.order} > 2, the \code{wtest()} will automatically calculate the main effect first and then do a pre-filter before calculating interactions.
       | ^
Maintainer: ‘Deisy Morselli Gysi <deisy.ccnr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Deisy", "Morselli"),
                      family = "Gysi",
                      role = c("aut", "cre"),
                      email = "deisy.ccnr@gmail.com"),
               person(given = "Andre",
                      family = "Voigt",
                      role = "aut"),
               person(given = c("Tiago", "Miranda"),
                      family = "Fragoso",
                      role = "aut"),
               person(given = "Eivind",
                      family = "Almaas",
                      role = "aut"),
               person(given = "Katja",
                      family = "Nowick.",
                      role = "aut"))
as necessary.
Maintainer: ‘Stéphane Guerrier <stef.guerrier@gmail.com>’

The Description field contains
  Guerrier, S. & Molinari, R. (2016) <arXiv:1607.05858>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) batch_modwt_wvar_cpp.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) batch_modwt_wvar_cpp.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) batch_modwt_wvar_cpp.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3_robust.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3_robust.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3_robust.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_wave_variance.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_wave_variance.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_wave_variance.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modwt_wvar_cpp.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modwt_wvar_cpp.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modwt_wvar_cpp.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wvar_cpp.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wvar_cpp.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wvar_cpp.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Shu Chen <chenshu@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shu",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "chenshu@umich.edu"),
               person(given = "Andrzej",
                      family = "Galecki",
                      role = "aut",
                      email = "agalecki@umich.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
checkRd: (-1) exploreSignatures.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:58-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:65-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:67-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generateData.Rd:47: Lost braces
    47 | \bold{code{data}} \tab the generated data \cr
       |           ^
checkRd: (-1) generateData.Rd:53: Lost braces
    53 | Refer to \bold{\emph{code{\link{retrieveDataFactory}}}} and to
       |                          ^
checkRd: (-1) qualifyFunctionArguments.Rd:14: Lost braces
    14 | A emph{\code{list}} with following names
       |       ^
checkRd: (-1) qualifyFunctionArguments.Rd:26: Lost braces
    26 | \item{code{arguments}}{a \code{pairList} of argument names and values.
       |           ^
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
checkRd: (-1) completeManualPage.Rd:12: Lost braces
    12 | See \emph{\bold{code{\link{ProcessingContext}}}}. Only
       |                     ^
checkRd: (-1) produceAllManualPagesFromObject.Rd:14: Lost braces
    14 | See \emph{\bold{\\code{\link{ProcessingContext}}}}.}
       |                       ^
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
Maintainer: ‘Alexander Kowarik <alexander.kowarik@statistik.gv.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Kowarik",
                      role = c("aut", "cre"),
                      email = "alexander.kowarik@statistik.gv.at"),
               person(given = "Angelika",
                      family = "Meraner",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  inf_mr.Rd: httw
  moon_reader.Rd: html_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) xshow.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) xshow.Rd:20: Lost braces in \enumerate; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xtest.Rd: compareGrowthCurves
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Philip Leifeld <philip.leifeld@essex.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘chemnet.Rd’:
    http://dx.doi.org/10.1111/j.1540-5907.2011.00580.x
    http://dx.doi.org/10.1007%2F978-3-531-91883-9_6
  File ‘knecht.Rd’:
    http://dx.doi.org/10.1111/j.1467-9507.2009.00564.x
    http://dx.doi.org/10.1016/j.socnet.2009.02.004
checkRd: (-1) chemnet.Rd:111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chemnet.Rd:112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knecht.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knecht.Rd:104: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knecht.Rd:105: Lost braces in \itemize; meant \describe ?
Author field differs from that derived from Authors@R
  Author:    ‘Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Christophe Dervieux [ctb]’
  Authors@R: ‘Yihui Xie [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: <https://orcid.org/0000-0002-5329-5987>), Christophe Dervieux [ctb]’
Found the following files/directories:
  ‘xgb.txt’
Maintainer: ‘Juste Goungounga <juste.goungounga@ehesp.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juste",
                      family = "Goungounga",
                      role = c("aut", "cre"),
                      email = "juste.goungounga@ehesp.fr",
                      comment = c(ORCID = "0000-0002-9039-2639")),
               person(given = "Hadrien",
                      family = "Charvat",
                      role = "aut",
                      comment = c(ORCID = "0000-0003-3624-1394")),
               person(given = "Darlin",
                      family = "Mba",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-9768-0230")),
               person(given = "Nathalie",
                      family = "Graffeo",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-7227-7525")),
               person(given = "Roch",
                      family = "Giorgi",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-6135-3078")))
as necessary.
Maintainer: ‘Susan Holmes <sp.holmes@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Susan",
                      family = "Holmes",
                      role = c("aut", "cre"),
                      email = "sp.holmes@gmail.com"),
               person(given = "Sourav",
                      family = "Chatterjee",
                      role = "aut"))
as necessary.

The Description field contains
  Chatterjee, Sourav (2020) <arXiv:1909.10140> This package includes the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Lumley",
                      role = c("aut", "cre"),
                      email = "t.lumley@auckland.ac.nz"),
               person(given = c("using", "data", "from", "Randall"),
                      family = "Munroe",
                      role = "aut"),
               person(given = c("about", "2.2e5", "survey"),
                      family = "participants",
                      role = "aut"))
as necessary.
Maintainer: ‘Emilio Torres-Manzanera <torres@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emilio",
                    family = "Torres-Manzanera",
                    role = c("aut", "cre"),
                    email = "torres@uniovi.es")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fit_XCI_E_model.Rd: coxph
  fit_XCI_model.Rd: coxph
  fit_all_models.Rd: coxph
  xlink_fit.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Emeline Perthame <emeline.perthame@pasteur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emeline",
                      family = "Perthame",
                      role = c("aut", "cre"),
                      email = "emeline.perthame@pasteur.fr",
                      comment = "emeline.perthame@inria.fr"),
               person(given = "Florence",
                      family = "Forbes",
                      role = "aut",
                      comment = "florence.forbes@inria.fr"),
               person(given = "Antoine",
                      family = "Deleforge",
                      role = "aut",
                      comment = "antoine.deleforge@inria.fr"),
               person(given = "Emilie",
                      family = "Devijver",
                      role = "aut",
                      comment = "emilie.devijver@kuleuven.be"),
               person(given = "Melina",
                      family = "Gallopin",
                      role = "aut",
                      comment = "melina.gallopin@u-psud.fr"))
as necessary.

The Description field contains
  al (2017) <arXiv:1701.07899>) which is an extension of GLLiM with a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
No examples, no tests, no vignettes
Maintainer: ‘Carson Sievert <cpsievert1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carson",
                    family = "Sievert",
                    role = c("aut", "cre"),
                    email = "cpsievert1@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  XML2Obs.Rd: getNodeSet
  XML2R.Rd: xmlParse, getNodeSet
  docsToNodes.Rd: getNodeSet
  nodesToList.Rd: xmlToList
  re_name.Rd: collapse
  urlsToDocs.Rd: xmlParse
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) xml_to_df.Rd:144: Lost braces; missing escapes or markup?
   144 | Default {NULL} means the workbook will not be protected with a password}
       |         ^
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
File ‘XML/libs/XML.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_frag.R’ ‘data_frag.R’ ‘elem.Rd’ ‘list_as_xml_document.R’
    ‘read_fragment.R’ ‘tag.R’ ‘write_xml.R’ ‘xml_fragment.R’
    ‘xmlbuilder.R’ ‘xmlbuilder.Rd’
Maintainer: ‘Joris Meys <Joris.Meys@UGent.be>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘drugTargetInteraction.Rd’:
    https://doi.org/10.1093/bioinformatics/btn162
  File ‘loo.Rd’:
    http://doi.org/10.1093/bib/bby095
  File ‘proteinInteraction.Rd’:
    https://doi.org/10.1093/bioinformatics/bth910
  File ‘xnet-package.Rd’:
    http://doi.org/10.1093/bib/bby095
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xpose.VPC.categorical.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  imDisplay.Rd: cimg
  imRead.Rd: load.image, imager, cimg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John Chambers <jmc@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "M."),
                      family = "Chambers",
                      role = "aut"),
               person(given = "John",
                      family = "Chambers",
                      role = "cre",
                      email = "jmc@r-project.org"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  RJulia.Rd: getInterface
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John Chambers <jmc@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "M."),
                      family = "Chambers",
                      role = "aut"),
               person(given = "John",
                      family = "Chambers",
                      role = "cre",
                      email = "jmc@r-project.org"))
as necessary.
Maintainer: ‘John Chambers <jmc@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "M."),
                      family = "Chambers",
                      role = "aut"),
               person(given = "John",
                      family = "Chambers",
                      role = "cre",
                      email = "jmc@r-project.org"))
as necessary.
Maintainer: ‘Hitoshi Iuchi <hiuchi@sfc.keio.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hitoshi",
                      family = "Iuchi",
                      role = c("aut", "cre"),
                      email = "hiuchi@sfc.keio.ac.jp"),
               person(given = c("Rikuhiro", "G."),
                      family = "Yamada",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘xtable.html’ ‘xtable.tex’
Maintainer: ‘Joao Claudio Macosso <joaoclaudiomacosso@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joao", "Claudio"),
                    family = "Macosso",
                    role = c("aut", "cre"),
                    email = "joaoclaudiomacosso@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  estimateVariance.Rd: selectiveInference
  xtune.Rd: glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) xwfGridsearch.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{iter}{Number of levels in the adaptive grid search. The resolution in b obtained is 2^{-1-iter}.}
       |                                                                                             ^
checkRd: (-1) cat_sim.Rd:110: Lost braces; missing escapes or markup?
   110 | \code{min} and {max} are mandatory for setting limits on the test length. User-defined
       |                ^
Maintainer: ‘Carter T. Butts <buttsc@uci.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carter", "T."),
                    family = "Butts",
                    role = c("aut", "cre"),
                    email = "buttsc@uci.edu")
as necessary.
Maintainer: ‘WenSui Liu <liuwensui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "WenSui",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwensui@gmail.com")
as necessary.
Maintainer: ‘John W. Emerson <john.emerson@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "W."),
                      family = "Emerson",
                      role = c("aut", "cre"),
                      email = "john.emerson@yale.edu"),
               person(given = c("Walton", "A."),
                      family = "Green",
                      role = "aut"))
as necessary.
Maintainer: ‘Shawn Garbett <shawn.garbett@vumc.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Shawn", "P"),
                      family = "Garbett",
                      role = "aut"),
               person(given = "Jeremy",
                      family = "Stephens",
                      role = c("aut", "cre")),
               person(given = "Kirill",
                      family = "Simonov",
                      role = "aut"),
               person(given = "Yihui",
                      family = "Xie",
                      role = "ctb"),
               person(given = "Zhuoer",
                      family = "Dong",
                      role = "ctb"),
               person(given = "Hadley",
                      family = "Wickham",
                      role = "ctb"),
               person(given = "Jeffrey",
                      family = "Horner",
                      role = "ctb"),
               person(family = "reikoch",
                      role = "ctb"),
               person(given = "Will",
                      family = "Beasley",
                      role = "ctb"),
               person(given = "Brendan",
                      family = "O'Connor",
                      role = "ctb"),
               person(given = c("Gregory", "R."),
                      family = "Warnes",
                      role = "ctb"),
               person(given = "Michael",
                      family = "Quinn",
                      role = "ctb"),
               person(given = c("Zhian", "N."),
                      family = "Kamvar",
                      role = "ctb"),
               person(given = "Charlie",
                      family = "Gao",
                      role = "ctb"),
               person(given = "Shawn",
                      family = "Garbett",
                      role = "cre",
                      email = "shawn.garbett@vumc.org"))
as necessary.
File ‘yaml/libs/yaml.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Nathaniel Phillips <yarrr.book@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: www.thepiratesguidetor.com
    From: inst/doc/guide.html
  URI: www.github.com/ndphillips/yarrr/issues
    From: inst/doc/pirateplot.html

The URL field contains the following bad parts:
  www.thepiratesguidetor.com
The URL field should be a list of URLs separated by commas or
whitespace.
Maintainer: ‘Somjit Roy <somjit.roy2001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Somjit",
                    family = "Roy",
                    role = c("aut", "cre"),
                    email = "somjit.roy2001@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ycevo.Rd: dplyr_tidy_select
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘exhaustive_lhl.Rd’ ‘gaussian_fit.Rd’ ‘hyperbolic_fit.Rd’
Maintainer: ‘Kim Nimon <kim.nimon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kim",
                      family = "Nimon",
                      role = c("aut", "cre"),
                      email = "kim.nimon@gmail.com"),
               person(given = "Fred",
                      family = "Oswald",
                      role = "aut"),
               person(given = c("J.", "Kyle"),
                      family = "Roberts.",
                      role = "aut"))
as necessary.
checkRd: (-1) boot.yhat.Rd:3: Lost braces
     3 | \title{Bootstrap metrics produced from /code{calc.yhat}}
       |                                             ^
checkRd: (-1) boot.yhat.Rd:19: Lost braces
    19 |     Ouput of /code{lm}
       |                   ^
checkRd: (-1) boot.yhat.Rd:22: Lost braces
    22 |     Output of /code{calc.yhat}
       |                    ^
checkRd: (-1) booteval.yhat.rd:3: Lost braces
     3 | \title{Evaluate bootstrap metrics produced from /code{calc.yhat}}
       |                                                      ^
checkRd: (-1) booteval.yhat.rd:5: Lost braces
     5 |   This function evaluates the bootstrap metrics produced from /code{boot.yhat}.   
       |                                                                    ^
checkRd: (-1) combCI.rd:26: Lost braces
    26 |   This function evaluates the bootstrap metrics produced from /code{boot.yhat}.   
       |                                                                    ^
checkRd: (-1) commonality.rd:12: Lost braces
    12 |     Output from /code{aps}
       |                      ^
checkRd: (-1) dombin.rd:12: Lost braces
    12 |     Output from /code{dominance}
       |                      ^
checkRd: (-1) dominance.rd:12: Lost braces
    12 |     Output from /code{aps}
       |                      ^
checkRd: (-1) plotCI.yhat.rd:5: Lost braces
     5 |   This function plots CIs that have been produced from /code{booteval.yhat}.
       |                                                             ^
checkRd: (-1) plotCI.yhat.rd:32: Lost braces
    32 |   This function plots CIs that have been produced from /code{booteval.yhat}.   
       |                                                             ^
checkRd: (-1) plotCI.yhat.rd:35: Lost braces
    35 | This returns a plot of CIs that have been produced from /code{booteval.yhat}.
       |                                                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  boot.yhat.Rd: boot
  booteval.yhat.rd: boot
  plotCI.yhat.rd: boot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Greg Lamp <greg@yhathq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Greg",
                      family = "Lamp",
                      role = c("aut", "cre"),
                      email = "greg@yhathq.com"),
               person(given = "Stevie",
                      family = "Smith",
                      role = "aut",
                      email = "dev@yhathq.com"),
               person(given = "Ross",
                      family = "Kippenbrock",
                      role = "aut",
                      email = "ross@yhathq.com"))
as necessary.
'library' or 'require' calls not declared from:
  ‘plyr’ ‘randomForest’
Maintainer: ‘Sergio Salvino Guirreri <sergioguirreri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sergio", "Salvino"),
                    family = "Guirreri",
                    role = c("aut", "cre"),
                    email = "sergioguirreri@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tinniam V Ganesh <tvganesh.85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tinniam", "V"),
                    family = "Ganesh",
                    role = c("aut", "cre"),
                    email = "tvganesh.85@gmail.com")
as necessary.
Maintainer: ‘Matías Castillo Aguilar <matcasti@umag.cl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

The Description field contains
  et al. (2019) <arXiv:1910.04475>. Model fitting can be carried out via
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daewoo Pak <heavyrain.pak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daewoo",
                      family = "Pak",
                      role = c("aut", "cre"),
                      email = "heavyrain.pak@gmail.com"),
               person(given = "Song",
                      family = "Yang",
                      role = "aut"))
as necessary.
Maintainer: ‘Junlong Sun <junlong.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junlong",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "junlong.sun@gmail.com"),
               person(given = "Song",
                      family = "Yang",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

The Description field contains
  Mayrink (2019) <arXiv:1910.02406>. Model fitting carried out via
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xuanhua (Peter) Yin <peteryin.sju@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Manuel",
                      family = "Russon",
                      role = "aut",
                      email = "RUSSONM@stjohns.edu"),
               person(given = "Xuanhua",
                      family = "Yin",
                      role = "aut",
                      email = "peteryin.sju@hotmail.com",
                      comment = "Peter"),
               person(given = "Xuanhua",
                      family = "Yin",
                      role = "cre",
                      email = "peteryin.sju@hotmail.com",
                      comment = "Peter"))
as necessary.
Maintainer: ‘Emanuele Guidotti <emanuele.guidotti@hotmail.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("YUIMA", "Project"),
                      family = "Team",
                      role = "aut"),
               person(given = "Emanuele",
                      family = "Guidotti",
                      role = "cre",
                      email = "emanuele.guidotti@hotmail.it"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘yyjsonr/libs/yyjsonr.so’:
  Found non-API calls to R: ‘R_lsInternal’, ‘SETLENGTH’,
    ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Robert Lee <rhlee@colorado.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robert",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "rhlee@colorado.edu")
as necessary.
Maintainer: ‘Clare Horscroft <chorscroft@aol.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Clare",
                    family = "Horscroft",
                    role = c("aut", "cre"),
                    email = "chorscroft@aol.co.uk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘zcta.R’
Maintainer: ‘Francois Brun <francois.brun@acta.asso.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Brun",
                      role = c("aut", "cre"),
                      email = "francois.brun@acta.asso.fr",
                      comment = "ACTA"),
               person(given = "David",
                      family = "Makowski",
                      role = "aut",
                      comment = "INRA"),
               person(given = "Daniel",
                      family = "Wallach",
                      role = "aut",
                      comment = "INRA"),
               person(given = c("James", "W."),
                      family = "Jones.",
                      role = "aut",
                      comment = "U.of Florida"))
as necessary.
'library' or 'require' calls not declared from:
  ‘coda’ ‘dlm’ ‘maps’ ‘mgcv’ ‘mnormt’ ‘mvtnorm’ ‘randomForest’ ‘rpart’
  ‘rpart.plot’ ‘sensitivity’ ‘sp’ ‘spatial’ ‘tseries’
Maintainer: ‘Tanya Cashorali <tanyacash@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tanya",
                    family = "Cashorali",
                    role = c("aut", "cre"),
                    email = "tanyacash@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cache_report.R’ ‘list_deposit.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  graph_pairs.Rd: graphNEL
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' calls not declared from:
  ‘crop’ ‘mvtnorm’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘deposit_stats.R’ ‘scrap_stats.R’
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
    54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
       |                                                                                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  glm.cons.Rd: glm2
  glm.fit.cons.Rd: glm.fit2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Running examples in ‘zetadiv-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Zeta.order.ex
> ### Title: Expectation of zeta diversity for a specific number of
> ###   assemblages or sites
> ### Aliases: Zeta.order.ex
> 
> ### ** Examples
> 
> 
> utils::data(bird.spec.coarse)
> data.spec.bird <- bird.spec.coarse[,3:193]
> 
> zeta.bird <- Zeta.order.ex(data.spec.bird, order = 3)
> zeta.bird
$zeta.order
[1] 3

$combinations
[1] 302621

$zeta.val
[1] 57.61204

$zeta.val.sd
[1] 13.10351

> 
> ##########
> s
Error: object 's' not found
Execution halted
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘external_fitters.Rd’ ‘zfunction.Rd’ ‘zlm.Rd’ ‘zprint.Rd’
Maintainer: ‘Markus Jochmann <markus.jochmann@ncl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Jochmann",
                    role = c("aut", "cre"),
                    email = "markus.jochmann@ncl.ac.uk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘convert-jyear-legacy.R’
Maintainer: ‘Gavin Rozzi <gr@gavinrozzi.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tianchen Xu <tx2155@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tianchen",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "tx2155@columbia.edu",
                      comment = c(ORCID = "0000-0002-0102-7630")),
               person(given = c("Ryan", "T."),
                      family = "Demmer",
                      role = "aut"),
               person(given = "Gen",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Ariel Duarte-López <aduarte@ac.upc.edu>’

The Description field contains
  (2013) <arXiv:1304.4540>, the Zipf-Poisson Extreme (Zipf-PE), the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stefan Evert <stefan.evert@fau.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Evert",
                      role = c("aut", "cre"),
                      email = "stefan.evert@fau.de"),
               person(given = "Marco",
                      family = "Baroni",
                      role = "aut",
                      email = "marco.baroni@unitn.it"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘productivity_measures.Rd’:
    http://dx.doi.org/10.18419/opus-2556
  File ‘zipfR_package.Rd’:
    http://dx.doi.org/10.18419/opus-2556
Maintainer: ‘Melina Ribaud <melina.ribaud@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Melina",
                    family = "Ribaud",
                    role = c("aut", "cre"),
                    email = "melina.ribaud@gmail.com")
as necessary.
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘notate.R’
Maintainer: ‘Fang Liu <fang.liu.131@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fang", "Liu", "with", "contributions", "from", "Yunchuan"),
                      family = "Kong",
                      role = "aut",
                      email = "fang.liu.131@nd.edu"),
               person(given = "Fang",
                      family = "Liu",
                      role = "cre",
                      email = "fang.liu.131@nd.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  zoib.Rd: Formula
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) ZIClass.Rd:87: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:72: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:74: Escaped LaTeX specials: \_
checkRd: (-1) zid.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:63: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:182: Lost braces
   182 |   dQuote{tab-delimited text file} when you have done and close the spreadsheet
       |         ^
Maintainer: ‘Jose M Pozo <josmpozo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) in.zoom.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:13: Lost braces in \itemize; meant \describe ?
Maintainer: ‘David Beiner <zra.r.package@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Beiner",
                    role = c("aut", "cre"),
                    email = "zra.r.package@gmail.com")
as necessary.
Maintainer: ‘Ernest Guevarra <ernestgmd@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘anthro4.Rd’:
    https://doi.org/10.1136/bmj.j3423
checkRd: (-1) update_ztable.Rd:75: Lost braces; missing escapes or markup?
    75 | must be NULL or contain only elements of {"h","t","b","p","!","H"}.}
       |                                          ^
checkRd: (-1) ztable_sub.Rd:78: Lost braces; missing escapes or markup?
    78 | must be NULL or contain only elements of {"h","t","b","p","!","H"}.
       |                                          ^
Maintainer: ‘Masatoshi Katabuchi <mattocci27@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Masatoshi",
                    family = "Katabuchi",
                    role = c("aut", "cre"),
                    email = "mattocci27@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Oliver Kirchkamp <oliver@kirchkamp.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Kirchkamp",
                    role = c("aut", "cre"),
                    email = "oliver@kirchkamp.de")
as necessary.
Maintainer: ‘Vincent Guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vincent",
                    family = "Guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Maintainer: ‘Leah F. South <leah.south@hdr.qut.edu.au>’

The Description field contains
  <arXiv:1811.05073>), control functionals (CF, Oates et al. (2017)
  South et al., 2020 <arXiv:2002.00033>). ZV-CV is a parametric approach
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Frederik Kok Hansen <frederik_kok@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Frederik", "Kok"),
                    family = "Hansen",
                    role = c("aut", "cre"),
                    email = "frederik_kok@icloud.com")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) abclass.Rd:133: Lost braces; missing escapes or markup?
   133 |     \code{abclass.control()} returns an object of class {abclass.control}
       |                                                         ^
checkRd: (-1) supclass.Rd:109: Lost braces; missing escapes or markup?
   109 | to solve the equivalent linear programming problem via the package {Rglpk}.
       |                                                                    ^
checkRd: (-1) supclass.Rd:110: Lost braces; missing escapes or markup?
   110 | It is recommended to use a recent version of {GLPK}.
       |                                              ^
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
checkRd: (-1) bind_tweets.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bind_tweets.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) accelimp.Rd:15: Lost braces
    15 | \item[]{...}
       |        ^
Found the following files/directories:
  ‘acceldata2.RData’
File ‘acc/libs/acc.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘ACDm/libs/ACDm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) overstallwoods.Rd:184-185: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) overstallwoods.Rd:186-187: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) overstallwoods.Rd:188-189: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) overstallwoods.Rd:190-191: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acep_load_base.Rd’ ‘acep_rst.Rd’ ‘acep_token_plot.R’
    ‘acep_token_table.R’
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acoRn.R’ ‘clean_input.R’ ‘create_mock_dataset.R’
    ‘exclude_duplicates.R’ ‘find_parents.R’ ‘identify_duplicates.R’
Namespace in Imports field not imported from: ‘hunspell’
  All declared Imports should be used.
checkRd: (-1) Ehrenfest.Rd:19: Lost braces
    19 | In this experiment there are i balls in Urn I, and remaining 2n-i balls in Urn II. Then at any instance, the probability of selecting a ball from Urn I and placing it in Urn II is i/2n, and the other way of placing a ball from Urn II to Urn I is (2n-i)/2n. At each instant we let the number i of balls in the Urn I to be the state of the system. Thus, the state space is S = { 0, 1, 2, \ldots, 2n }. Then we can pass from state i only to either of the states i-1 or i+1.
       |                                                                                                                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) Ehrenfest.Rd:20: Lost braces
    20 | Here, S = {0, 1, \ldots, 2n}. 
       |           ^
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘svglite’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘tidyr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_accumulation_metrics.R’
Namespaces in Imports field not imported from:
  ‘MASS’ ‘RcppProgress’
  All declared Imports should be used.
File ‘actuar/libs/actuar.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following files/directories:
  ‘Example.jpeg’
checkRd: (-1) est_S_Plus_Plus_MethodA.Rd:31: Lost braces; missing escapes or markup?
    31 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method A}
       |                                                          ^
checkRd: (-1) est_S_Plus_Plus_MethodB.Rd:31: Lost braces; missing escapes or markup?
    31 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method B}
       |                                                          ^
checkRd: (-1) est_S_Star_Plus_MethodA.Rd:29: Lost braces; missing escapes or markup?
    29 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method A}
       |                                                          ^
checkRd: (-1) est_S_Star_Plus_MethodB.Rd:29: Lost braces; missing escapes or markup?
    29 |   \item{trt_diff}{Estimate of treatment difference for S_{*+} using Method B}
       |                                                          ^
Specified C++11: please drop specification unless essential
checkRd: (-1) adana.Rd:25: Lost braces; missing escapes or markup?
    25 |   \item{gatype}{Type of GA. \itemize{\item{"gga": generational GA}  \item{"ssga": steady state GA} } {Default value is "gga"}}
       |                                                                                                      ^
checkRd: (-1) adana.Rd:26: Lost braces; missing escapes or markup?
    26 |   \item{objective}{Type of optimization. \itemize{\item{"min": minimization}  \item{"max": maximization} } {Default value is "max"}}
       |                                                                                                            ^
checkRd: (-1) adana.Rd:34: Lost braces; missing escapes or markup?
    34 |                  {Default value is "initbin"}}
       |                  ^
checkRd: (-1) adana.Rd:56: Lost braces; missing escapes or markup?
    56 |                \itemize{\item{"integer"}  \item{"real"} } {Default value is "real"}}
       |                                                           ^
checkRd: (-1) adana.Rd:185: Lost braces; missing escapes or markup?
   185 |     {Default value is "w"}
       |     ^
checkRd: (-1) adapt.Rd:46: Lost braces
    46 | \item{qvals}{a vector of values in [0, 1]U{Inf}. Q-values. See Details}
       |                                           ^
checkRd: (-1) corr_lfdr.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ctgm_lfdr.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ctgm_lfdr.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot_2d.Rd:40: Lost braces; missing escapes or markup?
    40 | \code{plot_2d_lfdr} gives the contour plot of local FDR estimates when all p-values are equal to \code{targetp}. It is recommended to run \code{plot_2d_lfdr} for multiple \code{targetp}'s ranging from {0.001, 0.005, 0.01, 0.05}.
       |                                                                                                                                                                                                          ^
checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^
checkRd: (-1) ada.Rd:171: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘IntervalEstimator-class.Rd’ ‘PValue-class.Rd’
    ‘PointEstimator-class.Rd’ ‘analyze.R’ ‘estimators.R’
    ‘evaluate_estimator.R’ ‘fisher_information.R’
    ‘integrate_over_sample_space.R’ ‘mle_distribution.R’ ‘n2c2_helpers.R’
    ‘plot.R’ ‘print.R’ ‘reference_implementation.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘blocks.R’ ‘compress.R’ ‘connect_adf.R’ ‘demo.R’ ‘device_create.R’
    ‘entry_info.R’ ‘helpers.R’ ‘move.R’ ‘move.Rd’ ‘s3_conn.R’
    ‘s3_methods.R’ ‘virtual_path.R’
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) med.groups.Rd:20: Lost braces; missing escapes or markup?
    20 | medication groups using the construction \emph{"{NAME}"}.
       |                                                 ^
checkRd: (-1) med.groups.Rd:26: Lost braces; missing escapes or markup?
    26 | Another example is "NotVita" defined as "(!{Vitamines})", which selects all
       |                                            ^
Namespace in Imports field not imported from: ‘cli’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cm_formula.R’ ‘tag_add.R’
Namespaces in Imports field not imported from:
  ‘fields’ ‘knitr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘BayesFactor’ ‘GGally’ ‘Hmisc’ ‘WRS2’ ‘boot’ ‘car’ ‘dplyr’ ‘effects’
  ‘effsize’ ‘forcats’ ‘ggplot2’ ‘lm.beta’ ‘nlme’ ‘readr’ ‘robust’
  ‘sandwich’ ‘sjstats’ ‘tidyr’
  All declared Imports should be used.
checkRd: (-1) count_cases.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitaep.Rd:14: Lost braces
    14 | \item A sequence of goodness-of-fit measures consist of Akaike Information Criterion (\code{AIC}), Consistent Akaike Information Criterion (\code{CAIC}), Bayesian Information Criterion (\code{BIC}), Hannan-Quinn information criterion (\code{HQIC}), Anderson-Darling (\code{AD}), Cram\'{e}er-von Misses (\code{CVM}), Kolmogorov-Smirnov (\code{KS}), and log-likelihood (\code{log-likelihood}) statistics.
       |                                                                                                                                                                                                                                                                                              ^
Found the following files/directories:
  ‘table_AeRobiology’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘report_basic.R’ ‘report_cum_plots.R’ ‘report_log_mass.R’
    ‘report_plots.R’ ‘set_params_2.R’
Namespace in Imports field not imported from: ‘flextable’
  All declared Imports should be used.
Running ‘Ch-Basics.R’ [3s/11s]
  Comparing ‘Ch-Basics.Rout’ to ‘Ch-Basics.Rout.save’ ... OK
  Running ‘Ch-Intro.R’ [4s/10s]
  Comparing ‘Ch-Intro.Rout’ to ‘Ch-Intro.Rout.save’ ... OK
  Running ‘Ch-LinearRegression.R’ [8s/21s]
  Comparing ‘Ch-LinearRegression.Rout’ to ‘Ch-LinearRegression.Rout.save’ ...46,51c46,51
<  Min.   :   2   Min.   :  20   Min.   : 0.00522  
<  1st Qu.:  52   1st Qu.: 134   1st Qu.: 0.46449  
<  Median : 122   Median : 282   Median : 1.32051  
<  Mean   : 197   Mean   : 418   Mean   : 2.54846  
<  3rd Qu.: 268   3rd Qu.: 541   3rd Qu.: 3.44017  
<  Max.   :1098   Max.   :2120   Max.   :24.45946  
---
>  Min.   :   2   Min.   :  20   Min.   : 0.005  
>  1st Qu.:  52   1st Qu.: 134   1st Qu.: 0.464  
>  Median : 122   Median : 282   Median : 1.321  
>  Mean   : 197   Mean   : 418   Mean   : 2.548  
>  3rd Qu.: 268   3rd Qu.: 541   3rd Qu.: 3.440  
>  Max.   :1098   Max.   :2120   Max.   :24.459  
886c886
< -0.619068 -0.025568  0.000000 -0.000134  0.033201  0.641027 
---
> -0.6191 -0.0256  0.0000 -0.0001  0.0332  0.6410 
  Running ‘Ch-Microeconometrics.R’
  Comparing ‘Ch-Microeconometrics.Rout’ to ‘Ch-Microeconometrics.Rout.save’ ... OK
  Running ‘Ch-Programming.R’ [54s/133s]
  Comparing ‘Ch-Programming.Rout’ to ‘Ch-Programming.Rout.save’ ... OK
  Running ‘Ch-TimeSeries.R’ [9s/22s]
  Comparing ‘Ch-TimeSeries.Rout’ to ‘Ch-TimeSeries.Rout.save’ ... OK
  Running ‘Ch-Validation.R’ [77s/202s]
  Comparing ‘Ch-Validation.Rout’ to ‘Ch-Validation.Rout.save’ ... OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘colour_table.R’ ‘save_govuk.Rd’
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) estimate.affinity.matrix.Rd:31: Lost braces; missing escapes or markup?
    31 | than \code{Y}, then those variables that appear in \code{X} but no in {Y}
       |                                                                       ^
checkRd: (-1) estimate.affinity.matrix.lowrank.Rd:36: Lost braces; missing escapes or markup?
    36 | \code{Y}, then those variables that appear in \code{X} but no in {Y} should
       |                                                                  ^
checkRd: (-1) show.correlations.Rd:47: Lost braces
    47 | code{ndims} dimensions. Defaults to all dimensions unless the latter are
       |     ^
checkRd: (-1) getNetworkGridLayout.Rd:6-11: Lost braces
     6 | getCoordinatesFromVertexId2<-function(AFMImage, vId) {
       |                                                      ^
Namespaces in Imports field not imported from:
  ‘DBI’ ‘assertthat’ ‘tibble’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘am_data.Rd’
Namespaces in Imports field not imported from:
  ‘mFilter’ ‘regclass’ ‘writexl’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘generate_workbook.Rd’
Namespace in Imports field not imported from: ‘docstring’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
File ‘ahaz/libs/ahaz.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘devtools’ ‘mixexp’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘randomNames’ ‘tidyr’
  All declared Imports should be used.
checkRd: (-1) AEHMLE.Rd:42-45: Lost braces
    42 | \item{basehaz}{: {baseline hazard structure including baseline
       |                  ^
checkRd: (-1) AHMLE.Rd:41-43: Lost braces
    41 | \item{basehaz}{: {baseline hazard structure including baseline
       |                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘akaike_adjusted_rsq.R’ ‘filter_vif.R’ ‘fit_models.R’
    ‘select_models.R’
checkRd: (-1) aimPlot.Rd:39: Lost braces; missing escapes or markup?
    39 |  \item \code{Variable} {1st column: The various aims to be completed}
       |                        ^
checkRd: (-1) aimPlot.Rd:40: Lost braces; missing escapes or markup?
    40 |  \item \code{Percentage} {2nd column: The percentage of completeness}
       |                          ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.GRiwrm.R’
checkRd: (-1) get_airnow_area.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{parameters}{Parameter(s) to return data for. Choices are PM_{2.5}
       |                                                                   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gateway_keyring.R’ ‘gateway_openai.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘airship.R’
checkRd: (-1) plot.dke.fun.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item{las}{ Numeric in {0,1,2,3}; the style of axis labels. 
       |                          ^
checkRd: (-1) interpp.Rd:119: Lost braces
   119 |   If \code{linear} is \\code{TRUE}, linear
       |                             ^
checkRd: (-1) buildPhylipLineage.Rd:61: Lost braces; missing escapes or markup?
    61 |                                      names with the format {"Inferred1", "Inferred2", ...}.
       |                                                            ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_plan_stats.R’
checkRd: (-1) ALF.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) APEXMS.Rd:14: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) APEXMS.Rd:15: Lost braces in \enumerate; meant \describe ?
File ‘AlgDesign/libs/AlgDesign.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) optimalfrequency.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:31: Escaped LaTeX specials: \$
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lambda_functions.R’ ‘likelihood-space.R’ ‘snc.R’
checkRd: (-1) allestimates.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_cohorts.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_cohorts.Rd:36: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘episodes.Rd’ ‘loadouts.Rd’ ‘seasons.Rd’ ‘survivalists.Rd’
Specified C++11: please drop specification unless essential
File ‘alphabetr/libs/alphabetr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘inference.R’ ‘transformers.R’ ‘variance.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) UN1.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) rateprof.Rd:64: Escaped LaTeX specials: \&
Malformed Title field: should not end in a period.
checkRd: (-1) altopt.ic.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘calculate_covariates.R’
Namespaces in Imports field not imported from:
  ‘magrittr’ ‘tidyverse’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘jsonlite’
  All declared Imports should be used.
checkRd: (-1) convertCoord.Rd:32: Lost braces
    32 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
checkRd: (-1) convertCoord.individual.Rd:33: Lost braces
    33 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
checkRd: (-1) getCoord.Rd:39: Lost braces
    39 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
checkRd: (-1) getCoord.individual.Rd:39: Lost braces
    39 | here{https://lbs.amap.com/faq/account/key/72}}
       |     ^
checkRd: (-1) getLocation.Rd:60: Lost braces; missing escapes or markup?
    60 | {https://lbs.amap.com/faq/account/key/72}}
       | ^
checkRd: (-1) getLocation.individual.Rd:60: Lost braces
    60 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘deltaFibonacciCompress.Rd’ ‘read.AmigaBitmapFont.Rd’
    ‘read.AmigaBitmapFontSet.Rd’ ‘write.AmigaBitmapFont.Rd’
Namespaces in Imports field not imported from:
  ‘devtools’ ‘dplyr’ ‘gridExtra’
  All declared Imports should be used.
checkRd: (-1) aMNLFA.prune.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘kernlab’
  All declared Imports should be used.
checkRd: (-1) AmpliconDuo-package.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:40-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:43-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:47-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:50-52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:53-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:56-58: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
checkRd: (-1) AncestryMapper2.0-package.Rd:33: Escaped LaTeX specials: \~
checkRd: (-1) AncestryMapper2.0-package.Rd:38: Escaped LaTeX specials: \~
checkRd: (-1) EKF_1d_interp_joint.Rd:55: Lost braces; missing escapes or markup?
    55 | Prior 1x1 covariance matrix for predicting x_t from x_{t-1}.
       |                                                       ^
checkRd: (-1) EKF_interp_joint.Rd:65: Lost braces; missing escapes or markup?
    65 | Prior 2x2 covariance matrix for predicting x_t from x_{t-1}.
       |                                                       ^
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app.R’
checkRd: (-1) animate.Rd:625-627: Lost braces
   625 | group = function(...) {
       |                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘anim-animate.R’ ‘anim-prep-cat.R’ ‘anim-prep.R’ ‘funnel-web-data.R’
    ‘kangaroo-data.R’ ‘kangaroo-plot.R’ ‘proportional-shade.R’
    ‘wallaby-data.R’ ‘wallaby-plot.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) concat.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.}
       |                                                                                                                     ^
checkRd: (-1) concat.Rd:35: Lost braces
    35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.}
       |                                                                                                                               ^
checkRd: (-1) concat.Rd:35: Lost braces
    35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.}
       |                                                                                                                                             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
checkRd: (-1) PV_post_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_post_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ANOFA-contrastFrequencies.R’ ‘ANOFA-emFrequencies.R’
Namespace in Imports field not imported from: ‘class’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ANOPA-anopa.R’ ‘ANOPA-contrastProportions.R’ ‘ANOPA-convert.R’
    ‘ANOPA-random.R’
Namespaces in Imports field not imported from:
  ‘car’ ‘datasets’ ‘dplyr’ ‘ggplot2’ ‘plotly’ ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DescTools’ ‘HH’ ‘datasets’ ‘dplyr’ ‘rhandsontable’ ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DescTools’ ‘HH’ ‘datasets’ ‘dplyr’ ‘rhandsontable’ ‘shiny’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Af_edge_RMSD.R’ ‘VDJ_3d_properties.R’
checkRd: (-1) PS-methods.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:65-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Sim-Functions.Rd:126: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:127-129: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:135: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:136-137: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:138-140: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:141-143: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘Rdpack’ ‘mcclust’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘curl’ ‘httr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘RcppParallel’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘AER’ ‘ChainLadder’ ‘ISLR’ ‘ggplot2’
  All declared Imports should be used.
checkRd: (-1) apc.indiv.est.model.Rd:142: Lost braces
   142 | For model testing: \code{\link{apc.indiv.model.table}}, code{\link{apc.indiv.compare.direct}}, \code{\link{waldtest}}, \code{\link{linearHypothesis}}
       |                                                             ^
Namespace in Imports field not imported from: ‘pls’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
possible bashism in configure.ac line 32 (should be 'b = a'):
  if test x"${RSysinfoName}" == x"Darwin"; then
  possible bashism in configure.ac line 43 (should be 'b = a'):
     if test x"${hasOpenMP}" == x""; then
checkRd: (-1) predict_adjust.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) iconplot.Rd:172: Lost braces
   172 |     the height of the area containing the panels and a margin of size code{100 * 0.1} 
       |                                                                           ^
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Found the following files/directories:
  ‘APBinary_PPV.csv’ ‘APBinary_TPF.csv’
  ‘APBinary_ap_summary(method=perturbation,B=1500).csv’
  ‘APBinary_auc_summary(method=perturbation,B=1500).csv’
  ‘APSurv_PPV.csv’ ‘APSurv_TPF.csv’
  ‘APSurv_ap_summary(method=bootstrap,B=500).csv’
  ‘APSurv_auc_summary(method=bootstrap,B=500).csv’
  ‘CompareAP_Binary_dap_summary(method=none).csv’
  ‘CompareAP_Survival_dap_summary(method=bootstrap,B=500).csv’
checkRd: (-1) getages.Rd:11: Lost braces; missing escapes or markup?
    11 | containing the amalgamated $^{40}$Ar$^*$/$^{39}$Ar$_K$-ratios and
       |                              ^
checkRd: (-1) getages.Rd:11: Lost braces; missing escapes or markup?
    11 | containing the amalgamated $^{40}$Ar$^*$/$^{39}$Ar$_K$-ratios and
       |                                            ^
Undeclared package ‘cxhull’ in Rd xrefs
Unknown package ‘cxhull’ in Rd xrefs
Namespaces in Imports field not imported from:
  ‘bannerCommenter’ ‘config’ ‘feather’ ‘here’ ‘knitr’ ‘log4r’ ‘ps’
  ‘rmarkdown’ ‘skimr’ ‘snakecase’ ‘testthat’ ‘tidyverse’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) estimate_t0.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_t0.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_t0.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:75: Lost braces in \itemize; meant \describe ?
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
checkRd: (-1) recm.Rd:55: Lost braces; missing escapes or markup?
    55 | {In all cases,} \eqn{x_{j,t-1}} {in} \eqn{ECT} {is replaced by} \eqn{x_{j,t} \;\;\;\;\; \forall \;\; q_{j} = 0}
       | ^
checkRd: (-1) recm.Rd:55: Lost braces; missing escapes or markup?
    55 | {In all cases,} \eqn{x_{j,t-1}} {in} \eqn{ECT} {is replaced by} \eqn{x_{j,t} \;\;\;\;\; \forall \;\; q_{j} = 0}
       |                                 ^
checkRd: (-1) recm.Rd:55: Lost braces; missing escapes or markup?
    55 | {In all cases,} \eqn{x_{j,t-1}} {in} \eqn{ECT} {is replaced by} \eqn{x_{j,t} \;\;\;\;\; \forall \;\; q_{j} = 0}
       |                                                ^
checkRd: (-1) uecm.Rd:76: Lost braces; missing escapes or markup?
    76 |   {In addition,} \eqn{x_{j,t-1}} {and} \eqn{\Delta x_{j,t}} {cancel out
       |   ^
checkRd: (-1) uecm.Rd:76: Lost braces; missing escapes or markup?
    76 |   {In addition,} \eqn{x_{j,t-1}} {and} \eqn{\Delta x_{j,t}} {cancel out
       |                                  ^
checkRd: (-1) uecm.Rd:76-77: Lost braces
    76 |   {In addition,} \eqn{x_{j,t-1}} {and} \eqn{\Delta x_{j,t}} {cancel out
       |                                                             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘adb_archive.R’ ‘adb_backup.R’ ‘adb_querry.R’ ‘helpers.R’
    ‘normGeometry.R’
Namespaces in Imports field not imported from:
  ‘purrr’ ‘shinyBS’ ‘shinydashboard’ ‘shinyjs’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sample_ARMA_coef.R’
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘art_pals.R’ ‘art_pals.Rd’ ‘circle_data.R’ ‘circle_data.Rd’
    ‘grid_maker.R’ ‘group_numbers.R’ ‘packer.R’ ‘packer.Rd’ ‘rotator.R’
    ‘square_data.R’ ‘square_data.Rd’ ‘wave_data.R’ ‘wave_data.Rd’
Package required but not available: ‘gWidgets2tcltk’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘purrr’
  All declared Imports should be used.
File ‘ash/libs/ash.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) convertAlgoPerfToWideFormat.Rd:28: Lost braces
    28 | code{NA} means the performance value is not available, possibly because the algorithm run was aborted.
       |     ^
checkRd: (-1) parseASScenario.Rd:40: Lost braces
    40 |   code{NA} means the cost is not available, possibly because the feature computation was aborted.
       |       ^
checkRd: (-1) parseASScenario.Rd:47: Lost braces
    47 |   code{NA} means the cost is not available, possibly because the feature computation was aborted.
       |       ^
checkRd: (-1) parseASScenario.Rd:55: Lost braces
    55 |   code{NA} means the feature is not available, possibly because the feature computation was aborted.
       |       ^
checkRd: (-1) parseASScenario.Rd:62: Lost braces
    62 |   code{NA} means the feature is not available, possibly because the feature computation was aborted.
       |       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ped.pine.Rd’ ‘ped.salmon.Rd’ ‘pheno.apple.Rd’ ‘pheno.pine.Rd’
    ‘pheno.salmon.Rd’
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
checkRd: (-1) plot.AssetPricing.Rd:199-200: Lost braces
   199 |   yakka. (Note that \code{flap} stands for dQuote{function list
       |                                                  ^
Specified C++11: please drop specification unless essential
checkRd: (-1) readOEM.Rd:34: Lost braces
    34 |   always, the identifier has the format YYYY-NNNP{PP}, where YYYY is the year
       |                                                  ^
checkRd: (-1) readOEM.Rd:36: Lost braces
    36 |   during year YYYY and P{PP} is a part specifier comprising 1 to 3 capital letters
       |                         ^
checkRd: (-1) readOEM.Rd:74-75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readOEM.Rd:76-79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readOEM.Rd:80-86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ataCoKriging.Rd:52: Lost braces; missing escapes or markup?
    52 | only one contrained condition for all points and all variables, \\sum_{i=1}^n\\lambda_i +\\sum_{j=1}^m\\beta_j =1, assuming expected means of variables known and constant with the study area.
       |                                                                       ^
checkRd: (-1) ataCoKriging.Rd:52: Lost braces; missing escapes or markup?
    52 | only one contrained condition for all points and all variables, \\sum_{i=1}^n\\lambda_i +\\sum_{j=1}^m\\beta_j =1, assuming expected means of variables known and constant with the study area.
       |                                                                                                ^
checkRd: (-1) simulation_dgp.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{x_discrete}{TRUE if the distribution of the covariate is uniform on {-3.0, -2.9, ..., 3.0} and
       |                                                                           ^
checkRd: (-1) simulation_dgp.Rd:23: Lost braces
    23 | \item{att_oracle}{the sample analog of E[D{Y(1) - Y(0)}|D=1]}
       |                                           ^
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R.rsp’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘atpol_grids.R’ ‘miscRscript.r’ ‘plot_points_on_atpol.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘catchment_sim.R’ ‘elementary_pop.R’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘convert.r’
Namespaces in Imports field not imported from:
  ‘dlnm’ ‘ggplot2’ ‘mvmeta’ ‘pbs’ ‘tsModel’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tidyr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gg_freiburg.Rd’
checkRd: (-1) audioSample.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) audioSample.Rd:21: Lost braces in \itemize; meant \describe ?
File ‘audio/libs/audio.so’:
  Found non-API calls to R: ‘EXTPTR_PTR’, ‘R_checkActivity’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bind_lr.Rd’ ‘lex_density.Rd’
Namespace in Imports field not imported from: ‘abind’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘broom’ ‘diptest’ ‘ggplot2’ ‘hexbin’ ‘moments’
  All declared Imports should be used.
checkRd: (-1) get_candidate_covariates.Rd:50: Lost braces
    50 | \item \code{covars_data}   {The \code{data.frame} that is filtered out of \code{df} with only the selected \code{covars}}. The values of the
       |                            ^
checkRd: (-1) get_candidate_covariates.Rd:53: Lost braces
    53 | \item \code{patientIds}   {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}
       |                           ^
checkRd: (-1) get_prioritised_covariates.Rd:40: Lost braces
    40 | \item \code{multiplicative_bias}{The absolute log of the multiplicative bias term for each of the auto-selected prioritised covariates}
       |                                 ^
checkRd: (-1) get_recurrence_covariates.Rd:34: Lost braces
    34 | \item \code{patientIds}   {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}
       |                           ^
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘usethis’
  All declared Imports should be used.
checkRd: (-1) Autoplotprotein-package.Rd:27: Lost braces
    27 | code{\link{help}}
       |     ^
checkRd: (-1) Autoplotprotein.Rd:25: Lost braces
    25 | code{\link{help}}
       |     ^
checkRd: (-1) data.Rd:22: Lost braces
    22 | code{\link{help}}
       |     ^
checkRd: (-1) domain_data.Rd:29: Lost braces
    29 | code{\link{help}}
       |     ^
checkRd: (-1) length_data.Rd:32: Lost braces
    32 | code{\link{help}}
       |     ^
checkRd: (-1) plotdomain.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotmutagensis.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotsite.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) site_data.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
Specified C++11: please drop specification unless essential
checkRd: (-1) noauto_scorecard.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{fit}{See glm {stats}.}
       |                    ^
checkRd: (-1) noauto_scorecard2.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{fit}{See glm {stats}.}
       |                    ^
Namespaces in Imports field not imported from:
  ‘Ckmeans.1d.dp’ ‘broom.mixed’ ‘igraph’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘plotly’ ‘shinycssloaders’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘Hmisc’
  All declared Imports should be used.
checkRd: (-1) avar_mo_cpp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_mo_cpp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_mo_cpp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘readxl’ ‘reshape2’ ‘stringr’ ‘tidyr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘bslib’ ‘rclipboard’ ‘rmarkdown’
  All declared Imports should be used.
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \$
Namespace in Imports field not imported from: ‘openssl’
  All declared Imports should be used.
checkRd: (-1) cosmos_mongo.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{host}{For \code{cosmos_mongo_endpoint}, the URL of the Cosmos DB MongoDB endpoint. Usually of the form "https://{account-name}.mongo.cosmos.azure.com:443/".}
       |                                                                                                                       ^
Namespace in Imports field not imported from: ‘curl’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘R6’ ‘jose’ ‘openssl’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘httr’ ‘openssl’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘round_rect.r’ ‘waffle.r’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘baf.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_cyclone.R’
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘crosstalk’ ‘plotly’
  All declared Imports should be used.
possible bashism in configure.ac line 53 (unsafe echo with backslash):
      echo '         To use all CPU cores, you should install OpenMP by running\n                    '
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘dexpfit.R’ ‘expfit.R’ ‘icarfit.R’ ‘logisticfit.R’
checkRd: (-1) barcoding.spe.identify2.Rd:27: Lost braces; missing escapes or markup?
    27 | read.dna() from package {ape} was used to obtain DNAbin object for unaligned non-coding barcodes.
       |                         ^
File ‘Barnard/libs/Barnard.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acceptenceRate.R’ ‘extractTreeData.R’ ‘generic_functions.R’
    ‘permVint.R’ ‘plot_all_trees.R’ ‘splitDensity.R’ ‘treeBarPlot.R’
    ‘treeDataframe.R’ ‘treeList.R’ ‘vintPlot.R’
File ‘base64enc/libs/base64enc.so’:
  Found non-API call to R: ‘SETLENGTH’
File ‘base64enc/libs/base64enc.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘chadwick_installation.R’
checkRd: (-1) bd_collect.Rd:30: Lost braces; missing escapes or markup?
    30 | the {dplyr}'s verbs and thus use it in local memory completely.
       |     ^
checkRd: (-1) bd_write.Rd:52: Lost braces; missing escapes or markup?
    52 | Writes a remote table to disk that was called via {bdplyr}.
       |                                                   ^
checkRd: (-1) bdplyr.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Compatibility with {dplyr} verbs without using SQL language}
       |                           ^
Namespace in Imports field not imported from: ‘splines’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘ggplot2’
  All declared Imports should be used.
File ‘BAS/libs/BAS.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) ExperimentJob.Rd:14: Lost braces
    14 |   \item{\code{algo.id} [\code{character(1)}]:}{algo.id}{Algorithm ID.}
       |                                                        ^
checkRd: (-1) getAlgorithmIds.Rd:13: Lost braces
    13 | \item{ids}{[code{integer}]\cr
       |                 ^
checkRd: (-1) getProblemIds.Rd:13: Lost braces
    13 | \item{ids}{[code{integer}]\cr
       |                 ^
checkRd: (-1) makeExperimentRegistry.Rd:28: Lost braces
    28 | Default is dQuote{<name of registry>_files} in current working directory.}
       |                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘batchLLM.R’ ‘batchLLM_shiny.R’
checkRd: (-1) JobCollection.Rd:41: Lost braces
    41 |  \item{namespaces}{code{character} with required packages to load via \code{\link[base]{requireNamespace}}.}
       |                        ^
checkRd: (-1) addAlgorithm.Rd:31: Lost braces
    31 | Algorithms are functions which get the code{data} part as well as the problem instance (the return value of the
       |                                            ^
Namespace in Imports field not imported from: ‘vtable’
  All declared Imports should be used.
File ‘batman/libs/batman.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) plotDistributions.Rd:32: Lost braces
    32 | plot{...} functions are generated programmatically so the function calls in
       |     ^
checkRd: (-1) coupledMetropolis.Rd:83-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:86-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:89-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:92-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:95-97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:98-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:101-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:104-106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:107-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:110-112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:113-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:116-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:119-121: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:122-124: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:125-127: Lost braces in \itemize; meant \describe ?
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) BayesComm-package.Rd:33: Escaped LaTeX specials: \&
File ‘BayesComm/libs/BayesComm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) dilution.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) bayesDccGarch.Rd:91: Lost braces; missing escapes or markup?
    91 | \item{$H_n1 }{ Bayesian prediction of volatilities and co-volatilities for y_{n+1}.}
       |                                                                              ^
checkRd: (-1) bayesDccGarch.Rd:92: Lost braces; missing escapes or markup?
    92 | \item{$R_n1 }{ Bayesian prediction of coditional correlation for y_{n+1}.}
       |                                                                    ^
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) GroupSingleVoxelFETS.Rd:53: Lost braces
    53 | online trajectories related to the state parameter, the simulated BOLD responses, \mjseqn{\hat{Y}}{ascii}.
       |                                                                                                   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bayes_colors.R’ ‘bayes_label.R’
Namespaces in Imports field not imported from:
  ‘MASS’ ‘MatrixModels’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘StanHeaders’ ‘astsa’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
checkRd: (-1) gMLE.bb.Rd:18: Lost braces
    18 |   \item{optim.method}{optimization method in \code{optim()}{stats}.}
       |                                                            ^
Namespace in Imports field not imported from: ‘plyr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
File ‘bayesianETAS/libs/bayesianETAS.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) bma.bx.cy.Rd:69: Lost braces
    69 | the initial values for parameters in models. For example, inits<-function(){list(alpha=0,beta=0,c=0,var1=0.5,r=1,lamda=0.01)}.
       |                                                                            ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_cutoff.R’
checkRd: (-1) DE.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:61: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
checkRd: (-1) predict.bayeslm.fit.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{X         }{ If call \code{bayeslm} with matrices input \code{x} and {y} but not formula, pass new matrix to predict here. See example for details.}
       |                                                                              ^
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘FastGP’
  All declared Imports should be used.
checkRd: (-1) insert_NAs.Rd:22: Lost braces; missing escapes or markup?
    22 | A data frame where new rows have been inserted to regularize the \code{date} column. This results in values provided for \code{id}, \code{date}, and {dt} while inserting NAs for all other columns. Additionally, observations with duplicate date-times are removed.
       |                                                                                                                                                      ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helper_functions.R’
Namespaces in Imports field not imported from:
  ‘HDInterval’ ‘MCMCpack’ ‘R2WinBUGS’ ‘R2jags’ ‘carData’ ‘rjags’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) pulse_of_the_nation.Rd:10: Escaped LaTeX specials: \$
Namespaces in Imports field not imported from:
  ‘MASS’ ‘Matrix’ ‘matrixcalc’ ‘stats’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
checkRd: (-1) BayesTreePrior.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:41: Lost braces in \itemize; meant \describe ?
File ‘BayesTree/libs/BayesTree.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Running examples in ‘bazar-Ex.R’ failed
The error most likely occurred in:

> ### Name: normalize
> ### Title: Normalize a numeric vector
> ### Aliases: normalize
> 
> ### ** Examples
> 
> x <- rnorm(10)
> normalize(x)
Error in attributes(.Data) <- c(attributes(.Data), attrib) : 
  cannot set an attribute on a 'builtin'
Calls: normalize -> as.fun -> as.fun.character -> structure
Execution halted
checkRd: (-1) runUI.Rd:11: Lost braces
    11 | Runs a \bold{Shiny} application. This function normally does not return; interrupt bold{R} to stop the application (usually by pressing Ctrl+C or Esc).
       |                                                                                        ^
checkRd: (-1) getOperatingSystem.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:30: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘boot_bw.R’ ‘boot_bw_estimate.R’ ‘post_strat_estimation.R’
File ‘BCBCSF/libs/BCBCSF.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following files/directories:
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_50_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_50_biascor_1.RData’
checkRd: (-1) goftype1.Rd:4: Lost braces
     4 | \description{The goodness-of-fit (GOF) measures consist of Anderson-Darling (\code{AD}) and Cram\'{e}er-von Misses (\code{CVM}) statistics for progressive type-I interval censoring scheme are given, respectively, by
       |                                                                                                   ^
Found the following files/directories:
  ‘fabiabreast.txt’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ceac_plot_graph.R’ ‘ceef_plot_graph.R’ ‘ceplane_plot_graph.R’
    ‘contour_graph.R’ ‘eib_plot_graph.R’ ‘evppi.default.R’
    ‘evppi_plot_ggplot.R’ ‘info_rank_graph.R’ ‘plot.bcea.R’
    ‘prep_ceplane_params.R’
Namespaces in Imports field not imported from:
  ‘coda’ ‘knitr’ ‘plyr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) WindowSweep.Rd:32: Lost braces
    32 | `code{\link{GetVT}}`.   Otherwise, any column (e.g. \code{"Depth"}) in the 
       |      ^
checkRd: (-1) WindowSweep.Rd:36: Lost braces
    36 | \code{T.mid}  from the output of the `code{\link{GetVT}}`.}
       |                                           ^
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rlang’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) gene_s.Rd:17: Lost braces; missing escapes or markup?
    17 | giving the virus access to the cell and thus facilitating the COVID-19 disease. The gene sequence is mapped to the alphabet {0,1,2,3} via the obvious map A->0, C->1, G->2, T->3.
       |                                                                                                                             ^
checkRd: (-1) sars_cov_2.Rd:16: Lost braces; missing escapes or markup?
    16 | It consists of n = 29903 base pairs. The gene sequence is mapped to the alphabet {0,1,2,3} via the obvious map A->0, C->1, G->2, T->3.
       |                                                                                  ^
checkRd: (-1) bde.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:56: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘dump.txt’
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘chron’ ‘colorspace’ ‘gtable’ ‘htmltools’ ‘htmlwidgets’
  ‘httpuv’ ‘magrittr’ ‘munsell’ ‘plyr’ ‘scales’ ‘stringi’ ‘xtable’
  ‘yaml’
  All declared Imports should be used.
Found the following files/directories:
  ‘beast_plot_toy.pdf’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘BeeBDCQuery.Rd’ ‘continentOutlieRs.Rd’ ‘countryOutlieRs.Rd’
    ‘harmoniseR.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_contrast.R’ ‘apply_contrast.Rd’ ‘average_predictions.Rd’
    ‘estimate_varcov.R’ ‘estimate_varcov.Rd’ ‘get_marginal_effect.R’
    ‘get_marginal_effect.Rd’ ‘predict_counterfactuals.R’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘fitting.R’
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
File ‘BenfordTests/libs/BenfordTests.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) sockeye.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sockeye.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stagnant.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stagnant.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hill.Rd:39: Lost braces; missing escapes or markup?
    39 | \code{a} in {0, 1, 2} (see details))}
       |             ^
checkRd: (-1) read_ambi.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_ambi.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_twn.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_twn.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_twn.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘BiDAG’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘compiler’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) gen.data.Rd:42: Lost braces
    42 | code{cortype = 2} denotes the constant structure, where the \eqn{(i,j)} entry of covariance
       |     ^
Namespaces in Imports field not imported from:
  ‘DT’ ‘dplyr’ ‘ggplot2’ ‘readxl’ ‘rlist’ ‘shinyBS’ ‘shinyWidgets’
  ‘shinydashboard’ ‘shinyjs’ ‘shinythemes’ ‘stringr’ ‘tidyr’
  All declared Imports should be used.
Malformed Title field: should not end in a period.
checkRd: (-1) BETSsearch.Rd:56: Lost braces
    56 |        \item{To exclude whole expressions from the search, surround them with code{' '} and insert a \code{~} before each of them.
       |                                                                                   ^
checkRd: (-1) dummy.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{date}{a \code{list}. The periods for which the dummy must be set to one. Periods must be represented as {integer vectors}, as described for \code{start} and \code{end}.}
       |                                                                                                               ^
checkRd: (-1) dummy.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{from}{An \code{integer vector} The starting period of a sequence of perids for which the dummy must be set to one. Periods must be represented as {integer vectors}, as described for \code{start} and \code{end}.}
       |                                                                                                                                                         ^
checkRd: (-1) dummy.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{to}{The ending period of a sequence of perids for which the dummy must be set to one. Periods must be represented as {integer vectors}, as described for \code{start} and \code{end}.}
       |                                                                                                                            ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bfsMaps-package.Rd’
checkRd: (-1) bgmm-package.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) sp_bgsmtr.Rd:42: Lost braces; missing escapes or markup?
    42 | \item{c.star}{The threshold for computing posterior tail probabilities p_{ij} for Bayesian FDR as defined in Section 3.2 of  Song, Ge et al.(2019). If not specified the default is to set this threshold as the minimum posterior standard deviation, where the minimum is taken over all regression coefficients in the model.}
       |                                                                          ^
checkRd: (-1) dotPlot.Rd:56: Escaped LaTeX specials: \&
File ‘BiasedUrn/libs/BiasedUrn.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) Jeffreysbs.Rd:17: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘DAAG’ ‘datasets’ ‘expm’ ‘mvtnorm’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘nycflights13’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘RBGL’
  All declared Imports should be used.
checkRd: (-1) BiDimRegression.Rd:29: Lost braces; missing escapes or markup?
    29 | \item \code{euclidean.df1, affine.df1} -  degrees of freedom of the nominator used for the F-statistics propagated by Nakaya (1997); df1 = p-2, with p is the number of elements  needed to calculate the referring model: p=4 for the Euclidean and p=6 for the affine geometry {Nakaya, 1997, Table 1}.
       |                                                                                                                                                                                                                                                                                  ^
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘httr’
  All declared Imports should be used.
Found the following calls to data() loading into the global environment:
File ‘biglm/R/bigglm.R’:
  data(reset = TRUE)
  data(reset = FALSE)
See section ‘Good practice’ in ‘?data’.
Specified C++14: please drop specification unless essential
checkRd: (-1) bdm.ptsne.Rd:47: Lost braces; missing escapes or markup?
    47 | By default the algorithm is structured in \eqn{\sqrt{n}} epochs of \eqn{\sqrt{z}} iterations each, where \var{n} is the dataset size and \var{z} is the thread-size (\eqn{z=n*layers/threads}). The running time of the algorithm is then determined by \eqn{epochs*iters*t_i+ epochs*t_e} where \var{t_{i}} is the running time of a single iteration and \var{t_{e}} is the inter-epoch running time.
       |                                                                                                                                                                                                                                                                                                         ^
checkRd: (-1) bdm.ptsne.Rd:47: Lost braces; missing escapes or markup?
    47 | By default the algorithm is structured in \eqn{\sqrt{n}} epochs of \eqn{\sqrt{z}} iterations each, where \var{n} is the dataset size and \var{z} is the thread-size (\eqn{z=n*layers/threads}). The running time of the algorithm is then determined by \eqn{epochs*iters*t_i+ epochs*t_e} where \var{t_{i}} is the running time of a single iteration and \var{t_{e}} is the inter-epoch running time.
       |                                                                                                                                                                                                                                                                                                                                                                   ^
checkRd: (-1) pQF.Rd:30: Lost braces; missing escapes or markup?
    30 | When \code{M} is not square, a randomised estimator for the trace of \code{crossprod(M)^2} is used. This is the sample size. When \code{M} is of \code{"matrixfree"} and does not include the trace of {crossprod(M)} as a component, this sample size will also be used to compute that. See Hutchinson reference. }
       |                                                                                                                                                                                                        ^
Namespace in Imports field not imported from: ‘survival’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) VARXFit.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXLagCons.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXLagCons.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
File ‘Binarize/libs/Binarize.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘ccf_ccf_ID31_ID32_res.jpg’ ‘ccf_ccf_ID31_ID32_res.pdf’
  ‘output_ENSO_NHSST.tmp’ ‘plot_plot_ts_RAW_BIN_enso_sst.pdf’
  ‘plot_plot_ts_RAW_BIN_enso_sst01.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst02.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst03.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst04.png’ ‘plot_ts_ACER_ABRUPT.pdf’
  ‘plot_ts_ACER_ABRUPT01.png’ ‘plot_ts_ACER_ABRUPT02.png’
  ‘plot_ts_ACER_ABRUPT03.png’ ‘plot_ts_ACER_ABRUPT04.png’
  ‘salida_ACER_ABRUPT.tmp’ ‘scaterplot_scatterplot_ENSO_SST.jpg’
  ‘scaterplot_scatterplot_ENSO_SST.pdf’
checkRd: (-1) binom.confint.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:32-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:45: Lost braces in \itemize; meant \describe ?
File ‘binom/libs/binom.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘gtools’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bbassets.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) calc_ed.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) calc_pi.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) calc_si.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) cluster_reg_exp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘datana’ ‘ggplot2’ ‘graphics’ ‘lattice’ ‘stats’
  All declared Imports should be used.
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
   118 |   a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
       |                                                                                                                                                                              ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
   134 |   a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
       |                                                                                                                                                                              ^
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘poisson.ci.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘PCAbiplot_Helper.R’ ‘TDAbiplot.R’ ‘TDAbiplot.Rd’
    ‘TDAbiplot_helper.R’ ‘insertAxDeets.R’ ‘insertDataTable.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘AoD.Rd’ ‘AoD.biplot.Rd’ ‘CA.Rd’ ‘CA.biplot.Rd’ ‘CLPs.Rd’ ‘CVA.Rd’
    ‘CVA.biplot.Rd’ ‘PCA.Rd’ ‘PCA.biplot.Rd’ ‘PCO.Rd’ ‘PCO.biplot.Rd’
    ‘alpha.bags.Rd’ ‘axes.Rd’ ‘axes_coordinates.Rd’ ‘biplot.R’
    ‘biplot.Rd’ ‘classification.Rd’ ‘classify.Rd’ ‘density1D.Rd’
    ‘density2D.Rd’ ‘ellipses.Rd’ ‘fit.measures.Rd’ ‘interpolate.Rd’
    ‘legend.type.Rd’ ‘means.Rd’ ‘newaxes.Rd’ ‘newsamples.Rd’
    ‘plot.biplot.Rd’ ‘prediction.Rd’ ‘print.biplot.Rd’ ‘reflect.Rd’
    ‘regress.Rd’ ‘regress.biplot.Rd’ ‘rotate.Rd’ ‘samples.Rd’
    ‘summary.biplot.Rd’ ‘translate_axes.R’ ‘translate_axes.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bisg.R’ ‘model_cat_dir.R’ ‘model_lm.R’ ‘stanmodels.R’
Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/birp.Rcheck/00install.out’ for details.
Namespaces in Imports field not imported from:
  ‘stats’ ‘utils’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
File ‘BiTrinA/libs/BiTrinA.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bits_to_raw.Rd’ ‘bitstream-ints.R’ ‘bitstream-uints-exp-golomb.R’
Namespaces in Imports field not imported from:
  ‘knitr’ ‘markdown’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
checkRd: (-1) posteriorFeasibility.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) sp500Returns.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) RLdata500.Rd:8: Lost braces
     8 | A data frame with five variables: \code{fname_c1},\code{lname_c1},  \code{by}, code{bm}, \code{bd}.
       |                                                                                    ^
checkRd: (-1) identity.RLdata500.Rd:15: Lost braces
    15 | format A vector that contains the code{id}
       |                                       ^
checkRd: (-1) durban.Rd:16: Lost braces; missing escapes or markup?
    16 | This data set was obtained from the durban.rowcol {agridat} example in package 'agridat' 
       |                                                   ^
checkRd: (-1) fraction.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fraction.Rd:31-32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fraction.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assg2xBalance.R’
checkRd: (-1) estimate_density.Rd:25: Lost braces; missing escapes or markup?
    25 | evenly spaced points between \code{min} and {max}.
       |                                             ^
Namespace in Imports field not imported from: ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘caret’ ‘datasets’ ‘dplyr’ ‘e1071’ ‘ggplot2’ ‘rhandsontable’ ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘caret’ ‘datasets’ ‘dplyr’ ‘e1071’ ‘ggplot2’ ‘rhandsontable’ ‘shiny’
  All declared Imports should be used.
checkRd: (-1) bluebike.Rd:17: Lost braces
    17 | \item{\code{import_month_data}}\cr {Takes in numeric year/month values and imports data from \href{https://www.bluebikes.com/system-data}{Blue Bikes System Data} for the specified time}
       |                                    ^
checkRd: (-1) bluebike.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{\code{station_distance}}\cr {Returns stations with distance in ascending order given the user's current location}
       |                                   ^
checkRd: (-1) bluebike.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{\code{station_radius}}\cr {Plots the position of the stations within walking distance (500 m), and present the basic information about the stations via leaflet}
       |                                 ^
checkRd: (-1) bluebike.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{\code{trip_distance}}\cr {Computes the geographical distance between the start and end stations}
       |                                ^
checkRd: (-1) bluebike.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{\code{trip_history_sample}} \cr {A sample of 1000 trip data entries from February 2022}
       |                                       ^
checkRd: (-1) bluebike.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{\code{station_data}} \cr {A dataset that includes identification, position, and other basic information about bluebike stations}
       |                                ^
Specified C++11: please drop specification unless essential
checkRd: (-1) dot-pred_array_to_df.Rd:20: Lost braces; missing escapes or markup?
    20 | Helper function for as.data.frame.{fitted, forecast}. Converts predictive array to data.frame.
       |                                   ^
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) BMSC_pareto_k_table.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:57-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:60-63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:64-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:67-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) autoplot.tsregime.Rd:20: Lost braces
    20 | Graph for the stochastic processes of the object \ dQuote {\ code {tsregime}} for: Output process and if they exist for: Threshold process and Covariates process. In the case that there are missing data, a red line is drawn at the indicated time.
       |                                                           ^
checkRd: (-1) autoplot.tsregime.Rd:20: Lost braces; missing escapes or markup?
    20 | Graph for the stochastic processes of the object \ dQuote {\ code {tsregime}} for: Output process and if they exist for: Threshold process and Covariates process. In the case that there are missing data, a red line is drawn at the indicated time.
       |                                                                   ^
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘bnns.R’
Namespaces in Imports field not imported from:
  ‘BH’ ‘RcppEigen’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Rgraphviz’ ‘fastDummies’
  All declared Imports should be used.
checkRd: (-1) MvInv.Rd:23-35: Lost braces
    23 | function(eps, u = 0.5, alpha = 1, kappa = 1, gama = 1 / 2, N = 3001) {
       |                                                                      ^
checkRd: (-1) dt_.Rd:19-21: Lost braces
    19 | function(x, df, mean, sd) {
       |                           ^
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘caret’ ‘e1071’
  All declared Imports should be used.
checkRd: (-1) strength.viewer.Rd:148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:152: Lost braces in \itemize; meant \describe ?
checkRd: (-1) boa.chain.collapse.Rd:20: Lost braces
    20 | \seealso{ code{\link{boa.chain.reset}}, code{\link{boa.chain.subset}} }
       |               ^
checkRd: (-1) boa.chain.collapse.Rd:20: Lost braces
    20 | \seealso{ code{\link{boa.chain.reset}}, code{\link{boa.chain.subset}} }
       |                                             ^
checkRd: (-1) refAnnots.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refAnnots.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:19: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.R’ ‘utils.R’
Running examples in ‘bonn-Ex.R’ failed
The error most likely occurred in:

> ### Name: get_data
> ### Title: Get Data
> ### Aliases: get_data
> 
> ### ** Examples
> 
> 
> 	# GDP for all districts/all available years
>  get_data(variable="011", geography="KRE")
Error in curl::curl_fetch_memory(url, handle = handle) : 
  SSL peer certificate or SSH remote key was not OK [www.inkar.de]: SSL certificate problem: unable to get local issuer certificate
Calls: get_data ... request_fetch.write_memory -> <Anonymous> -> raise_libcurl_error
Execution halted
File ‘BoomSpikeSlab/libs/BoomSpikeSlab.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘HSAUR3’ ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
File ‘bootruin/libs/bootruin.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) bootSVD.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{Y}{initial data sample, which can be either a matrix or a \code{\link{ff}} matrix. \code{Y} can be either tall (\eqn{p} by \eqn{n}) or wide (\eqn{n} by \eqn{p}). If \code{Y} is entered and \code{V}, \code{d} and \code{U} (see definitions below) are not entered, then \code{bootSVD} will also compute the SVD of \code{Y}. In this case where the SVD is computed, \code{bootSVD} will assume that the larger dimension of \code{Y} is \eqn{p}, and the smaller dimension of code {Y} is \eqn{n} (i.e. \code{bootSVD} assumes that (\eqn{p>n}). This assumption can be overriden by manually entering \code{V}, \code{U} and \code{d}.\cr
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ^
Specified C++11: please drop specification unless essential
File ‘box/libs/box.so’:
  Found non-API calls to R: ‘ENVFLAGS’, ‘SET_ENVFLAGS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
checkRd: (-1) bp_rats.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp_sv.Rd:75: Lost braces; missing escapes or markup?
    75 | $$SV = sqrt(sum(x_{i+1} - x_i)^2/n-1)$$
       |                   ^
checkRd: (-1) bp_sv.Rd:80: Lost braces; missing escapes or markup?
    80 | $$SD = sqrt(sum(x_{i+1} - xbar)^2/n-1)$$
       |                   ^
checkRd: (-1) sv.Rd:78: Lost braces; missing escapes or markup?
    78 | $$SV = sqrt(sum(x_{i+1} - x_i)^2/n-1)$$
       |                   ^
checkRd: (-1) sv.Rd:82: Lost braces; missing escapes or markup?
    82 | $$SD = sqrt(sum(x_{i+1} - xbar)^2/n-1)$$
       |                   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sim_dat_one_trial_exp_covar.R’ ‘sim_dat_one_trial_exp_nocovar.R’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘AddXMLInternal.R’ ‘BrowseSVG.R’ ‘MakeAccessibleSVGInternal.R’
    ‘RewriteSVG.R’ ‘ViewSVG.R’
Namespaces in Imports field not imported from:
  ‘CCA’ ‘brainR’ ‘elasticnet’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘BranchGLM.R’ ‘BranchGLMTable.R’ ‘VariableImportance.R’
    ‘VariableImportance.boot.R’ ‘summaryBranchGLMVS.R’
File ‘Branching/libs/Branching.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_sinesp_data.R’ ‘get_sinesp_vde_data.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘read_any_breathtest.R’
checkRd: (-1) brglm.Rd:173: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:174: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:175-176: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:177-178: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:179-180: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:181-182: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:183-184: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:54-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:58: Lost braces in \itemize; meant \describe ?
Namespace in Imports field not imported from: ‘kableExtra’
  All declared Imports should be used.
checkRd: (-1) printHands.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) printHands.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) printHands.Rd:42: Lost braces in \itemize; meant \describe ?
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘profileModel’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) assertall.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) assertall.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) assertall.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) assertall.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brmsmargins.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) brmsmargins.Rd:130: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) brmsmargins.Rd:131: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) brmsmargins.Rd:132: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) builders.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:55: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘brm_archetype_average_cells.Rd’ ‘brm_archetype_average_effects.Rd’
    ‘brm_archetype_cells.Rd’ ‘brm_archetype_effects.Rd’
    ‘brm_archetype_successive_cells.Rd’
    ‘brm_archetype_successive_effects.Rd’ ‘brm_formula.Rd’
    ‘brm_prior_archetype.Rd’ ‘brm_prior_label.Rd’ ‘brm_prior_template.Rd’
    ‘brm_recenter_nuisance.Rd’ ‘summary.brms_mmrm_archetype.Rd’
    ‘utils_archetype.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘glmm_tidiers.R’ ‘rstanarm_tidiers.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘census2021.Rd’
Namespaces in Imports field not imported from:
  ‘rworldxtra’ ‘sp’
  All declared Imports should be used.
checkRd: (-1) bscontrol.Rd:39: Lost braces; missing escapes or markup?
    39 | \item{opt.solver}{a character string in the set {'enum', 'enum_c', 'gurobi', 'cplex', 'lpSolve', 'greedy'} indicating the optimization solver to be used in the program. The choice of 'cplex' requires the package \code{cplexAPI}, 'gurobi' requires the package \code{gurobi}, and 'lpSolve' requires the package \code{lpSolve}. These solver options are only available in the full version at \url{https://github.com/profyliu/bsnsing/}. The default (and the best) is 'enum_c'.}
       |                                                 ^
checkRd: (-1) bscontrol.Rd:45: Lost braces; missing escapes or markup?
    45 | \item{opt.model}{a character string in the set {'gini','error'} indicating the optimization model to solve in the program. The default is 'gini'. The 'error' option is not available in the current version.}
       |                                                ^
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘grDevices’ ‘graphics’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘mvtnorm’ ‘ssmn’
  All declared Imports should be used.
File ‘bsts/libs/bsts.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespaces in Imports field not imported from:
  ‘R6’ ‘RcppParallel’ ‘purrr’ ‘rstantools’ ‘scales’ ‘vizdraws’
  All declared Imports should be used.
checkRd: (-1) terms.BTM.Rd:23-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) terms.BTM.Rd:26-32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) terms.data.frame.Rd:25-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) terms.data.frame.Rd:32-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pnbd.mcmc.DrawParameters.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pnbd.mcmc.DrawParameters.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bubbleHMLegends.Rd:42: Lost braces; missing escapes or markup?
    42 | function. If {sizeBreaks} vector is supplied then this will be ignored and
       |              ^
checkRd: (-1) bubbleHeatmap.Rd:96: Lost braces; missing escapes or markup?
    96 | function. If {sizeBreaks} vector is supplied then this will be ignored and
       |              ^
checkRd: (-1) multiPlotInput.Rd:117: Lost braces; missing escapes or markup?
   117 | \code{unitBase}. This will be supplied to pretty function. If {sizeBreaks} is
       |                                                               ^
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘Hmisc’ ‘magrittr’ ‘rmarkdown’
  All declared Imports should be used.
checkRd: (-1) kink_estimator.Rd:60: Escaped LaTeX specials: \$
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_data_from_bursa.R’ ‘list_data_names.R’
checkRd: (-1) depreciation-class.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:46-47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:46-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:38-39: Lost braces in \itemize; meant \describe ?
File ‘bvarsv/libs/bvarsv.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Malformed Description field: should contain one or more complete sentences.
File ‘bvls/libs/bvls.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘markdown’
  All declared Imports should be used.
possible bashism in configure.ac line 36 (should be 'b = a'):
  if test "xx$CAIRO_LIBS" == "xx"; then
  possible bashism in configure.ac line 129 (should be 'b = a'):
  if test "xx${CAIRO_LIBS}" == "xx"; then
  possible bashism in configure.ac line 130 (should be 'b = a'):
     if test $uses_ats == "yes"; then
  possible bashism in configure.ac line 214 (test -a/-o):
       if test -z "${FCI}" -a -e "${pre}/include/fontconfig/fontconfig.h"; then
  possible bashism in configure.ac line 218 (test -a/-o):
       if test -z "${FTI}" -a -e "${pre}/include/freetype2/freetype/freetype.h"; then
  possible bashism in configure.ac line 227 (test -a/-o):
     if test -z "${FCI}" -a -z "${FTI}"; then
File ‘Cairo/libs/Cairo.so’:
  Found non-API calls to R: ‘EXTPTR_PTR’, ‘Rf_GetOption’, ‘Rf_gsetVar’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) calcUnique.Rd:24: Lost braces
    24 | functions, and often the /code{cut()} function are relatively slow when working with tens of millions of rows or more.
       |                               ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘internal_calib_aj.R’ ‘internal_calib_pv.R’
    ‘internal_extract_ids_states.R’ ‘plot.calib_mlr.Rd’ ‘plot_calib.R’
    ‘weights.R’
checkRd: (-1) calibration_bands.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{y}{response variable (in {0,1}).}
       |                                ^
checkRd: (-1) Recording.Rd:112: Lost braces; missing escapes or markup?
   112 | Stop recording images with {camcorder}.
       |                            ^
Namespace in Imports field not imported from: ‘sf’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘wds.R’
Found the following files/directories:
  ‘MDA231_tree.pdf’
checkRd: (-1) macrocaic.Rd:31: Lost braces; missing escapes or markup?
    31 |      {RRD = ln(N_1/N_2)}
       |      ^
checkRd: (-1) macrocaic.Rd:34: Lost braces; missing escapes or markup?
    34 |      {PDI = (N_1/(N_1 + N_2))-0.5}
       |      ^
checkRd: (-1) pd.calc.Rd:33: Lost braces
    33 |   \item{Length of tip branch lengths (TIPS)}{Length of tip branch lengths (TIPS)}{Unlike UEH, this measure does not use the unique paths to each tips on the \strong{subtree} and instead gives the sum of the unique branches leading to the tips on the \strong{complete tree}.}
       |                                                                                  ^
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    captr .1.4
    captr .1.3
    captr .1.2
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘do_la.Rd’ ‘linalg.Rd’ ‘scale_matrix.Rd’ ‘solve.caracas_symbol.Rd’
    ‘solve_lin.Rd’
Namespaces in Imports field not imported from:
  ‘sp’ ‘tibble’
  All declared Imports should be used.
checkRd: (-1) plot.ca.rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) States.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) fitweibull.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitweibull.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitweibull.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘cosinor-constructor.R’
checkRd: (-1) build_for_cran.Rd:13: Lost braces
    13 | The exit status code{R CMD build}, invisibly.
       |                     ^
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
File ‘cartographer/libs/cartographer.so’:
  Found non-API call to R: ‘PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘cartographr.R’
Namespace in Imports field not imported from: ‘shiny’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘CBRBase.R’ ‘RFModel.R’ ‘RegressionModel.R’ ‘distance.R’
    ‘generate_grid.R’ ‘utils.R’
Namespaces in Imports field not imported from:
  ‘R6’ ‘crayon’ ‘dplyr’ ‘tidyr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘Matrix’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘broom’ ‘epitools’
  All declared Imports should be used.
checkRd: (-1) catmapdata.Rd:9-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:14-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:19-20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:20-21: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘catmapdata.fixed.effects.plot.pdf’ ‘catmapdata.funnel.plot.pdf’
  ‘catmapdata.output.txt’ ‘catmapdata.random.effects.plot.pdf’
Specified C++14: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘epitools’ ‘forcats’ ‘purrr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘CBPS’ ‘spelling’
  All declared Imports should be used.
checkRd: (-1) tpcExample.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) as.mbsts.Rd:71: Lost braces; missing escapes or markup?
    71 |   \item{states.samples}{(\code{niter}- \code{burn}) draws from p(alpha_t | Y_{1:T}).}
       |                                                                              ^
checkRd: (-1) mcmc.Rd:61: Lost braces; missing escapes or markup?
    61 |   \item{states.samples}{(\code{niter}- \code{burn}) draws from p(alpha_t | Y_{1:T}).}
       |                                                                              ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘causal-model.R’ ‘check-linearity.R’ ‘deprecated.R’
    ‘translation-modules.R’ ‘utils.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cotOOP.R’ ‘utils.R’
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cbs_add_statcode_column.Rd’ ‘cbs_add_unit_column.Rd’
    ‘cbs_get_maps.Rd’ ‘cbs_get_sf.R’ ‘cbs_get_sf.Rd’
    ‘cbs_join_sf_with_data.Rd’
Namespace in Imports field not imported from: ‘GeneNet’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘fields’
  All declared Imports should be used.
checkRd: (-1) CUR.Rd:25: Lost braces; missing escapes or markup?
    25 | The number of low-dimension of C (J1 < {N,M}).
       |                                        ^
checkRd: (-1) CUR.Rd:29: Lost braces; missing escapes or markup?
    29 | The number of low-dimension of R (J2 < {N,M}).
       |                                        ^
checkRd: (-1) CX.Rd:23: Lost braces; missing escapes or markup?
    23 | The number of low-dimension (J < {N,M}).
       |                                  ^
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) data.dtmr.Rd:57: Lost braces; missing escapes or markup?
    57 | \code{RU}: {Referent units}
       |            ^
checkRd: (-1) data.dtmr.Rd:59: Lost braces; missing escapes or markup?
    59 | \code{PI}: {Partitioning and iterating attribute}
       |            ^
checkRd: (-1) data.dtmr.Rd:61: Lost braces; missing escapes or markup?
    61 | \code{APP}: {Appropriateness attribute}
       |             ^
checkRd: (-1) data.dtmr.Rd:63: Lost braces; missing escapes or markup?
    63 | \code{MC}: {Multiplicative Comparison attribute}
       |            ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘atp_plot.Rd’ ‘bioscope_plot.Rd’ ‘energetics_lme_summary.Rd’
    ‘energetics_ols_summary.Rd’ ‘fit_lme.Rd’ ‘get_energetics.Rd’
    ‘get_energetics_summary.Rd’ ‘get_rate_summary.Rd’
    ‘make_bioscope_plot.Rd’ ‘normalize.Rd’ ‘partition_data.Rd’
    ‘pipelines.r’ ‘rate_plot.R’ ‘rate_plot.Rd’ ‘rates_lme_summary.Rd’
    ‘read_data.Rd’
Found the following files/directories:
  ‘figure01ceg.pdf’ ‘figure02ceg.pdf’ ‘staged.tree.graph.pdf’
  ‘stratified-event-tree-plot.pdf’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ca_functions.r’ ‘plot.cellular_automata.Rd’
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
Unexported objects imported by ':::' calls:
  ‘copula:::dCdu’ ‘copula:::fitCopStart’
  See the note in ?`:::` about the use of this operator.
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Running examples in ‘CensSpatial-Ex.R’ failed
The error most likely occurred in:

> ### Name: algnaive12
> ### Title: Naive 1 and Naive 2 method for spatial prediction.
> ### Aliases: algnaive12
> ### Keywords: Spatial Censored SAEM
> 
> ### ** Examples
> 
> ###simulated coordinates
> n<-200 ### sample size for estimation.
> n1=100 ### number of observation used in the prediction.
> 
> ###simulated coordinates
> r1=sample(seq(1,30,length=400),n+n1)
> r2=sample(seq(1,30,length=400),n+n1)
> coords=cbind(r1,r2)### total coordinates (used in estimation and prediction).
> 
> coords1=coords[1:n,]####coordinates used for estimation.
> 
> type="matern"### covariance structure.
> 
> xtot<-cbind(1,runif((n+n1)),runif((n+n1),2,3))## X matrix for estimation and prediction.
> xobs=xtot[1:n,]## X matrix for estimation.
> 
> ###simulated data
> obj=rspacens(cov.pars=c(3,.3,0),beta=c(5,3,1),x=xtot,coords=coords,kappa=1.2,
+ cens=0.25,n=(n+n1),n1=n1,cov.model=type,cens.type="left")
> 
> data2=obj$datare
> data2[,4:5]=xobs[,-1]
> 
> cc=obj$cc
> y=obj$datare[,3]
> cutoff=rep(obj$cutoff,length(y[cc==1]))
> 
> 
> aux2=algnaive12(data=data2,cc=obj$cc,covar=TRUE,covar.col=4:5,
+ copred=obj$coords1,thetaini=c(.1,.2),y.col=3,coords.col=1:2,
+ fix.nugget=TRUE,nugget=0,kappa=1.2,cutoff=cutoff,trend=~V4+V5,
+ cov.model=type)
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Namespace in Imports field not imported from: ‘data.table’
  All declared Imports should be used.
checkRd: (-1) call_api_once.Rd:36: Lost braces
    36 | A code{data.frame} with the requested variables at the requested
       |       ^
checkRd: (-1) centroid.Rd:22: Lost braces; missing escapes or markup?
    22 | Centroid value C_{cen}(v) for node v defined as:
       |                  ^
checkRd: (-1) clusterrank.Rd:23: Lost braces; missing escapes or markup?
    23 | where the term f(c_{i}) accounts for the effect of i's local clustering and the term '+1' results from the contribution of \eqn{j}{j} itself. \cr
       |                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ce-hg.R’ ‘ce-mean.R’ ‘ce-prepdata.R’ ‘ce-quantiles.R’ ‘ce-uccs.R’
    ‘get-survey-files.R’ ‘read-expd.R’ ‘read-fmld.R’ ‘read-fmli.R’
    ‘read-mtbi.R’ ‘recode-ce-variables.R’
checkRd: (-1) cequre.Rd:31: Lost braces; missing escapes or markup?
    31 |   {epsi}^{# regression coefficients} times the initial value,
       |   ^
checkRd: (-1) cequre.Rd:31: Lost braces; missing escapes or markup?
    31 |   {epsi}^{# regression coefficients} times the initial value,
       |          ^
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘base’ ‘stats’ ‘tidyr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘batchtools’ ‘data.table’ ‘dplyr’ ‘ggplot2’ ‘htmltools’
  ‘jsonlite’ ‘magrittr’ ‘methods’ ‘plotly’ ‘reshape’ ‘rlang’ ‘shiny’
  ‘shinyWidgets’ ‘shinyjqui’ ‘shinyjs’ ‘shinymaterial’ ‘sortable’ ‘ssh’
  ‘xml2’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘extraDoseLines.Rd’ ‘extraDoseNames.Rd’ ‘fixedEffect.Rd’
    ‘randomEffect.Rd’
Namespace in Imports field not imported from: ‘lmtest’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) cfc.tbasis.Rd:23: Lost braces
    23 | Assuming one-dimensional \code{p1} and \code{p2} for clarity, the algorithm calculates cumulative incidence function for cuase 1 using a recursive formula: \code{ci1[n+1] = ci1[n] + dci1[n]}, where \code{dci1[n] = 0.5*(p2[n] + p2[n+1])*(p1[n] - p1[n+1])}. The increment in cumulative incidence function for cause 2 is similarly calculated, \code{dci2[n] = 0.5*(p1[n] + p1[n+1])*(p2[n] - p2[n+1])}. These equations guarantee that \code{dci1[n] + dci2[n] = p1[n]*p2[n] - p1[n+1]*p2[n+1]}. Event-free probability is simply calculated as code{efp[n] = p1[n]*p2[n]}. Taken together, this numerical integration ensures that \code{efp[n+1] - efp[n] + dci1[n] + dci2[n] = 0}.
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ^
Malformed Title field: should not end in a period.
File ‘cgAUC/libs/cgAUC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘tidyverse’
  All declared Imports should be used.
checkRd: (-1) Hausdorff.dist.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{vec1}{A \code{integer} vector forms a subset of {1, 2, ..., n}.}
       |                                                       ^
checkRd: (-1) Hausdorff.dist.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{vec2}{A \code{integer} vector forms a subset of {1, 2, ..., n}.}
       |                                                       ^
checkRd: (-1) online.univar.multi.Rd:47-57: Lost braces
    47 | online.univar.one2 = function(y_vec, gamma, tau_gamma, ...){
       |                                                            ^
checkRd: (-1) online.univar.multi.Rd:50-55: Lost braces
    50 |   while(FLAG == 0 & t <= length(y_vec)){
       |                                        ^
checkRd: (-1) online.univar.multi.Rd:71-89: Lost braces
    71 | online.univar.one3 = function(y_vec, tau_vec, ...){
       |                                                   ^
checkRd: (-1) online.univar.multi.Rd:72-74: Lost braces
    72 |   if(length(y_vec) != length(tau_vec)){
       |                                       ^
checkRd: (-1) online.univar.multi.Rd:77-87: Lost braces
    77 |   while(FLAG == 0 & t <= length(y_vec)){
       |                                        ^
checkRd: (-1) online.univar.multi.Rd:81-86: Lost braces
    81 |     while(j < J & FLAG == 0){
       |                             ^
Namespaces in Imports field not imported from:
  ‘AER’ ‘graphics’ ‘lmtest’
  All declared Imports should be used.
checkRd: (-1) cql.Rd:28: Lost braces; missing escapes or markup?
    28 | {X} \code{<x_var>, <(x_facet)>}: \tab\tab\tab\tab  X-axis variable. May include a second categorical\cr
       | ^
checkRd: (-1) cql.Rd:30: Lost braces; missing escapes or markup?
    30 | {Y} \code{<y_var>}: \tab\tab\tab\tab Y-axis variable. *Not used for \code{hist}.\cr
       | ^
checkRd: (-1) cql.Rd:38: Lost braces; missing escapes or markup?
    38 | {Y_label} \code{'<ylab>'}: \tab\tab\tab\tab  Y-axis custom label. Defaults to <y_var>\cr
       | ^
checkRd: (-1) cql.Rd:39: Lost braces; missing escapes or markup?
    39 | {Legend} \code{'<legend>'}: \tab\tab\tab\tab  Legend custom label. Defaults to <x_category>\cr
       | ^
checkRd: (-1) cql.Rd:40: Lost braces; missing escapes or markup?
    40 | {Colorset} \code{'<clist>'}: \tab\tab\tab\tab  Custom set of colors for <x_category> levels.\cr
       | ^
checkRd: (-1) cql.Rd:42: Lost braces; missing escapes or markup?
    42 | {AggFunc} \code{'<func>'}: \tab\tab\tab\tab Summary function for \code{bar} type.\cr
       | ^
checkRd: (-1) cql.Rd:45: Lost braces; missing escapes or markup?
    45 | {Fit} \code{'<show_se>'}: \tab\tab\tab\tab Valid types: \code{true|false}. Fit quadratic line.\cr
       | ^
checkRd: (-1) cql.Rd:47: Lost braces; missing escapes or markup?
    47 | {ConfInt} \code{'<interval>'}: \tab\tab\tab\tab  Show error bars. Value is confidence interval value. E.g. '.95'
       | ^
checkRd: (-1) create_unit_tests.Rd:17: Lost braces; missing escapes or markup?
    17 | Create `{testthat}` test cases for the code.
       |         ^
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘check_hint.R’ ‘check_hints.R’ ‘check_question.R’ ‘insert_audio.R’
File ‘checkmate/libs/checkmate.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespace in Imports field not imported from: ‘jsonlite’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  'knitr' 'rmarkdown'
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘dbplyr’
  All declared Imports should be used.
checkRd: (-1) C316.amp.Rd:28-32: Lost braces
    28 |     40 x {
       |          ^
checkRd: (-1) C317.amp.Rd:28-32: Lost braces
    28 |     40 x {
       |          ^
checkRd: (-1) C60.amp.Rd:63-67: Lost braces
    63 |     40 x {
       |          ^
Unknown package ‘qpcR’ in Rd xrefs
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘closestdist_gcms.Rd’ ‘compare_gcms.R’ ‘compare_gcms.Rd’
    ‘cor_gcms.Rd’ ‘dist_gcms.Rd’ ‘env_gcms.Rd’ ‘flatten_gcms.Rd’
    ‘hclust_gcms.Rd’ ‘kmeans_gcms.R’ ‘kmeans_gcms.Rd’
    ‘montecarlo_gcms.Rd’ ‘optk_gcms.Rd’ ‘summary_gcms.Rd’
    ‘transform_gcms.R’ ‘transform_gcms.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Ryacas-all.R’
Namespace in Imports field not imported from: ‘htmltools’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘base’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘dplyr’ ‘prettydoc’ ‘rmdformats’ ‘skimr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bind_record.Rd’ ‘chronicle.R’ ‘fmap_record.Rd’
    ‘grapes-greater-than-equals-grapes.Rd’ ‘pick.Rd’
Specified C++11: please drop specification unless essential
checkRd: (-1) chunker-methods.Rd:63: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) chunker-methods.Rd:64: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) chunker-methods.Rd:69: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) chunker-methods.Rd:70: Lost braces in \enumerate; meant \describe ?
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘stringr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
checkRd: (-1) ec.datalag.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{prepares Dy y_1 Dy_1 ... Dy_{nlag-1} for estimation}
       |                                    ^
checkRd: (-1) ec.datalag.Rd:15: Lost braces
    15 | ymat contains the folloiwing columns {Dy y_1 Dy_1 ... Dy_{nlag-1}}
       |                                      ^
checkRd: (-1) ec.datalag.Rd:15: Lost braces; missing escapes or markup?
    15 | ymat contains the folloiwing columns {Dy y_1 Dy_1 ... Dy_{nlag-1}}
       |                                                          ^
checkRd: (-1) lagn.Rd:21: Lost braces; missing escapes or markup?
    21 |              REM: alternative to "lead-lag" {dplyr} which applies to vector y
       |                                             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘long_est.R’
Namespace in Imports field not imported from: ‘magrittr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘circlize’ ‘utils’
  All declared Imports should be used.
checkRd: (-1) CIplot.Rd:58: Lost braces; missing escapes or markup?
    58 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.
       |                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘functions.R’
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘RInside’ ‘circular’
  All declared Imports should be used.
checkRd: (-1) rstable.Rd:42: Lost braces
    42 | Lo\"{g}ae\"{v}e, M. (1977). Probability Theory I. (fourth edition) Springer-Verlag, New York.
       |     ^
checkRd: (-1) rstable.Rd:42: Lost braces
    42 | Lo\"{g}ae\"{v}e, M. (1977). Probability Theory I. (fourth edition) Springer-Verlag, New York.
       |            ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cirls.fit.Rd’ ‘confint.cirls.Rd’
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘RColorBrewer’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘networkD3’
  All declared Imports should be used.
checkRd: (-1) data_generator.Rd:93: Lost braces; missing escapes or markup?
    93 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                     ^
checkRd: (-1) data_generator.Rd:93: Lost braces; missing escapes or markup?
    93 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                             ^
checkRd: (-1) data_generator.Rd:95: Lost braces; missing escapes or markup?
    95 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++}, S_{*+}
       |                                                                 ^
checkRd: (-1) data_generator.Rd:95: Lost braces; missing escapes or markup?
    95 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++}, S_{*+}
       |                                                                         ^
checkRd: (-1) data_generator_loop.Rd:96: Lost braces; missing escapes or markup?
    96 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                     ^
checkRd: (-1) data_generator_loop.Rd:96: Lost braces; missing escapes or markup?
    96 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                             ^
checkRd: (-1) data_generator_loop.Rd:98: Lost braces; missing escapes or markup?
    98 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++},
       |                                                                 ^
checkRd: (-1) data_generator_loop.Rd:99: Lost braces; missing escapes or markup?
    99 |   S_{*+} and PP estimands}
       |     ^
checkRd: (-1) ciu.ggplot.col.Rd:41: Lost braces; missing escapes or markup?
    41 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
checkRd: (-1) ciu.meta.explain.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
checkRd: (-1) ciu.meta.result.new.Rd:30: Lost braces; missing escapes or markup?
    30 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
checkRd: (-1) ciu.textual.Rd:38: Lost braces; missing escapes or markup?
    38 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_cluster_composition.R’ ‘extract_ids_vector.R’
    ‘perform_clustering.R’
checkRd: (-1) get_langs.Rd:13: Lost braces
    13 | character vector listing all the languages that tag API call supports. See \code{\link{tag_images}} and code{\link{tag_image_urls}}
       |                                                                                                             ^
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_raster.Rd’ ‘clc.R’ ‘clc_category.R’ ‘clc_raster.R’ ‘copy_to.Rd’
    ‘cut_to_extent.Rd’ ‘get_colors.Rd’ ‘get_levels.Rd’ ‘get_raster.Rd’
    ‘plot_clc.Rd’ ‘prepare_plot.Rd’ ‘save_to.Rd’
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    clhs_0.7-2
    clhs_0.7-0
    clhs_0.6-0
    clhs_0.5-7
    clhs_0.5-6
    clhs_0.5-3
    clhs_0.5-2
    clhs_0.5-1
    clhs_0.5-0
    clhs_0.4-3
    clhs_0.4-2
    clhs_0.4-1
    clhs_0.4-0
    clhs_0.3-2
    clhs_0.3-1
    clhs_0.3-0
    clhs_0.2-1
    clhs_0.2-0
    clhs_0.1-0
Namespace in Imports field not imported from: ‘sp’
  All declared Imports should be used.
File ‘ClickClust/libs/ClickClust.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) cf_save_kml.Rd:68: Lost braces
    68 | \code{\link{cf_find_station}} and code{vignette("choose-station")} for
       |                                       ^
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘calc_rci.R’
checkRd: (-1) clinsig.Rd:129: Lost braces
   129 |  be calculated with the measures specified in samp{mct} and samp{disp},
       |                                                   ^
checkRd: (-1) clinsig.Rd:129: Lost braces
   129 |  be calculated with the measures specified in samp{mct} and samp{disp},
       |                                                                 ^
File ‘clogitboost/libs/clogitboost.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) print.clogitL1.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) print.clogitL1.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) print.clogitL1.Rd:23: Lost braces in \itemize; meant \describe ?
File ‘clogitL1/libs/clogitL1.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cloud_drive_download_bulk.Rd’ ‘cloud_drive_read_bulk.Rd’
    ‘cloud_drive_upload_bulk.Rd’ ‘cloud_drive_write_bulk.Rd’
    ‘cloud_s3_download_bulk.Rd’ ‘cloud_s3_read_bulk.Rd’
    ‘cloud_s3_upload_bulk.Rd’ ‘cloud_s3_write_bulk.Rd’
checkRd: (-1) cb_participant_count.Rd:13: Lost braces
    13 | \item{query}{A phenotype query defined using the code{\link{phenotype}} function and logic operators (see example below)}
       |                                                      ^
checkRd: (-1) phenotype.Rd:10: Lost braces
    10 | \item{id}{A single phenotype id. Possible phenotyoes can be explored using the code{\link{cb_search_phenotypes}} function}
       |                                                                                    ^
checkRd: (-1) clr.Rd:24: Lost braces
    24 | the sense that its Karhunen-Lo\`{e}ve decomposition has qx terms only.}
       |                                 ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bias_df_combined.R’ ‘create_table_ep_15.R’
    ‘precision_calculate_aov_info.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Found the following files/directories:
  ‘clusterhap_reports’
Specified C++11: please drop specification unless essential
checkRd: (-1) HTKmeans.Rd:62: Lost braces
    62 | \item{centers }{A matrix of cluster centres.}
       |      ^
checkRd: (-1) HTKmeans.Rd:62: Lost braces
    62 | \item{centers }{A matrix of cluster centres.}
       |                ^
checkRd: (-1) HTKmeans.Rd:63: Lost braces
    63 | \item{cluster }{A vector of integers (from 1:\code{k}) indicating the cluster to which each point is allocated.}
       |      ^
checkRd: (-1) HTKmeans.Rd:63: Lost braces
    63 | \item{cluster }{A vector of integers (from 1:\code{k}) indicating the cluster to which each point is allocated.}
       |                ^
checkRd: (-1) HTKmeans.Rd:64: Lost braces
    64 | \item{itnb }{The number of iterations executed until convergence}
       |      ^
checkRd: (-1) HTKmeans.Rd:64: Lost braces
    64 | \item{itnb }{The number of iterations executed until convergence}
       |             ^
checkRd: (-1) HTKmeans.Rd:65: Lost braces
    65 | \item{converged }{Whether the algorithm stopped by converging or through reaching the maximum number of itertions.}
       |      ^
checkRd: (-1) HTKmeans.Rd:65: Lost braces
    65 | \item{converged }{Whether the algorithm stopped by converging or through reaching the maximum number of itertions.}
       |                  ^
File ‘clustering.sc.dp/libs/clustering.sc.dp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
File ‘ClusterStability/libs/ClusterStability.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘sp’ ‘spdep’
  All declared Imports should be used.
checkRd: (-1) dtmvnom.Rd:30: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘stringi’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘cluster’ ‘datasets’ ‘dplyr’ ‘klaR’ ‘psycho’ ‘shiny’
  All declared Imports should be used.
Error(s) in re-building vignettes:
--- re-building ‘CovarianceStructure.Rmd’ using rmarkdown
--- finished re-building ‘CovarianceStructure.Rmd’

Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘SpatialExMeuseData.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
SUMMARY: processing the following file failed:
  ‘SpatialExMeuseData.Rmd’

Error: Vignette re-building failed.
Execution halted
File ‘clv/libs/clv.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
checkRd: (-1) CMAPSS.Rd:10: Lost braces
    10 | \item \code{train}{ a list of class "hhsmm.data" as the train dataset}
       |                   ^
checkRd: (-1) CMAPSS.Rd:11: Lost braces
    11 | \item \code{test}{ a list of class "hhsmm.data" as the test dataset}
       |                  ^
checkRd: (-1) CMAPSS.Rd:12: Lost braces
    12 | \item \code{subsets}{ a matrix containig the number of units in each subset of the CMAPSS data set (FD001-FD004) for the train and test datasets}
       |                     ^
Namespace in Imports field not imported from: ‘MPV’
  All declared Imports should be used.
checkRd: (-1) cmb.search.Rd:50: Lost braces; missing escapes or markup?
    50 |   \item{order}{applied conditioning order {length p}}
       |                                           ^
checkRd: (-1) gp.realize.Rd:20: Lost braces; missing escapes or markup?
    20 | The list \code{l.v} is created by \code{makedistlist()} from a {n x p} design matrix on which to generate the unconditional GP realization.  The correlation parameters take on values in \code{(0,1)} and use the Gaussian correlation model, calculated as \code{rho^d(xi,xj)^2}.  This helper function is used to create the demonstration data used in the example for \code{calibrate()}.
       |                                                                ^
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
checkRd: (-1) bvp.Rd:24: Lost braces
    24 | differential equations.  The code{midptivp} method solves initial
       |                                  ^
checkRd: (-1) ivp.Rd:38: Lost braces
    38 | differential equations.  The code{midptivp} method solves initial
       |                                  ^
checkRd: (-1) ivpsys.Rd:29: Lost braces
    29 | differential equations.  The code{midptivp} method solves initial
       |                                  ^
checkRd: (-1) plot.predict.crrQR.Rd:18: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crrQR.Rd:22: Escaped LaTeX specials: \#
File ‘cmprsk/libs/cmprsk.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘FNN’ ‘R.utils’ ‘SearchTrees’ ‘colorspace’ ‘colourpicker’
  ‘data.table’ ‘maps’ ‘ncdf4’ ‘raster’ ‘shinyFiles’ ‘shinyWidgets’
  ‘shinyjs’ ‘shinythemes’ ‘tcltk’ ‘xml2’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘caret’ ‘e1071’ ‘epitools’ ‘shiny’ ‘shinyMatrix’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘basis.R’
checkRd: (-1) cnlt.reg.Rd:43: Lost braces
    43 | \emph{Technometrics}, bold{60} (1), 48-60, DOI 10.1080/00401706.2017.1281846.\cr\cr
       |                           ^
checkRd: (-1) fwtnppermC.Rd:35: Lost braces
    35 | Given \eqn{n} points on a line, \env{x}, each with a corresponding env{f} value this function computes
       |                                                                       ^
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘nnet’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘fields’ ‘knitr’
  All declared Imports should be used.
checkRd: (-1) educFM.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) educFM.Rd:23: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) educFM.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) educFM.Rd:28: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cb_summary_stats_numeric.R’
File ‘coenoflex/libs/coenoflex.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘CreateCohortExplorerApp.R’
Namespaces in Imports field not imported from:
  ‘Rdpack’ ‘coin’ ‘ggplot2’ ‘plyr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘collinear.R’ ‘cor_cramer_v.R’ ‘cor_df.R’ ‘cor_select.R’ ‘f_auc.Rd’
    ‘f_r2.Rd’ ‘f_r2_counts.Rd’ ‘f_v.Rd’ ‘f_v_rf_categorical.Rd’
    ‘identify.R’ ‘model_formula.R’ ‘preference_order.R’
    ‘preference_order_methods.R’ ‘target_encoding_methods.R’ ‘validate.R’
    ‘vif_df.R’ ‘vif_select.R’
File ‘collUtils/libs/collUtils.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘magrittr’ ‘qpdf’
  All declared Imports should be used.
checkRd: (-1) getHistList.Rd:32: Lost braces; missing escapes or markup?
    32 | ({FALSE})? If a bin is empty, the center of the bin is returned as the
       |  ^
checkRd: (-1) imageClusterPipeline.Rd:82: Lost braces; missing escapes or markup?
    82 | of the bin ({FALSE})? If a bin is empty, the center of the bin is returned
       |             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘simulate_populations.R’
Namespaces in Imports field not imported from:
  ‘grid’ ‘gridExtra’
  All declared Imports should be used.
checkRd: (-1) colour_values.Rd:143: Lost braces in \itemize; meant \describe ?
checkRd: (-1) colour_values.Rd:144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) colour_values_rgb.Rd:143: Lost braces in \itemize; meant \describe ?
checkRd: (-1) colour_values_rgb.Rd:144: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘c4a.Rd’ ‘c4a_plot_hcl_space.R’ ‘c4a_table.R’
Unexported object imported by a ':::' call: ‘crayon:::mypaste’
  See the note in ?`:::` about the use of this operator.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespaces in Imports field not imported from:
  ‘chi’ ‘dplyr’ ‘spatstat.utils’ ‘utils’
  All declared Imports should be used.
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) xsimplex.Rd:6: Lost braces; missing escapes or markup?
     6 |              Generates all points on a {p,n} simplex lattice (i.e. a p-part
       |                                        ^
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘cometExactTest_plot.pdf’
checkRd: (-1) BMD.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMD.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) comire.gibbs.Rd:67-68: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) comire.gibbs.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
Specified C++11: please drop specification unless essential
checkRd: (-1) count_pairs.Rd:19-20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) count_pairs.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) entropy.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) score_log_nonparam.Rd:36: Lost braces; missing escapes or markup?
    36 | {0, 1}.
       | ^
checkRd: (-1) score_log_semiparam.Rd:40: Lost braces; missing escapes or markup?
    40 | values in {0, 1}.
       |           ^
checkRd: (-1) sort_pairs.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) sort_pairs.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘GGally’ ‘RColorBrewer’ ‘abind’ ‘diagram’ ‘ggplot2’ ‘grid’ ‘gtable’
  ‘igraph’ ‘magrittr’ ‘plyr’ ‘purrr’ ‘reshape2’ ‘scales’ ‘useful’
  All declared Imports should be used.
checkRd: (-1) hmm.Rd:47-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:56-62: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) hmm.Rd:85-89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:95-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:104-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:108-111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:112-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:119-129: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:130-133: Lost braces in \itemize; meant \describe ?
File ‘compareC/libs/compareC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compareMCMCs.R’ ‘metrics-addMetrics.R’
checkRd: (-1) glass.Rd:10: Lost braces
    10 | \item{item}{factor}{200 levels - which item the measurements came from}
       |                    ^
checkRd: (-1) glass.Rd:11-12: Lost braces
    11 | \item{fragment}{factor}{4 levels - which of the four fragments from each item the observations were made
       |                        ^
checkRd: (-1) glass.Rd:13: Lost braces
    13 | \item{logNaO}{numeric}{log of sodium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:14: Lost braces
    14 | \item{logMgO}{numeric}{log of magnesium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:15: Lost braces
    15 | \item{logAlO}{numeric}{log of aluminium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:16: Lost braces
    16 | \item{logSiO}{numeric}{log of silicon concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:17: Lost braces
    17 | \item{logKO}{numeric}{log of potassium concentration to oxygen concentration}
       |                      ^
checkRd: (-1) glass.Rd:18: Lost braces
    18 | \item{logCaO}{numeric}{log of calcium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:19: Lost braces
    19 | \item{logFeO}{numeric}{log of iron concentration to oxygen concentration}
       |                       ^
checkRd: (-1) atomdeps.Rd:9: Lost braces
     9 |  \item{"tangle"}: {Dihedral angle defined by atoms A-B-C-D as described below. \code{NA}'s represent the free side chain dihedral angles \emph{chi} for that amino acid.}
       |                   ^
checkRd: (-1) atomdeps.Rd:10: Lost braces; missing escapes or markup?
    10 |  \item{"names"}: {The component atoms of the amino acid side chain.  Represents atom D in the dihedral.}
       |                  ^
checkRd: (-1) atomdeps.Rd:11: Lost braces; missing escapes or markup?
    11 |  \item{"matx"}: {The names of atoms A,B,C in the dihedral, with rows corresponding to the atoms in "names".}
       |                 ^
checkRd: (-1) atomdeps.Rd:12: Lost braces; missing escapes or markup?
    12 |  \item{"bangle"}: {Planar bond angle formed between B-C-D}
       |                   ^
checkRd: (-1) atomdeps.Rd:13: Lost braces; missing escapes or markup?
    13 |  \item{"blength"}: {Bond length between C-D}
       |                    ^
Namespaces in Imports field not imported from:
  ‘PearsonDS’ ‘VGAM’ ‘actuar’ ‘fExtremes’ ‘rmutil’
  All declared Imports should be used.
checkRd: (-1) keener.Rd:82: Lost braces; missing escapes or markup?
    82 | a_{ij} = (S_ij + 1) / (S_ij + S_ji + 2). This step should make comparing
       |   ^
Namespace in Imports field not imported from: ‘devtools’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fitmodel.R’
checkRd: (-1) concstats_hhi.Rd:13: Lost braces; missing escapes or markup?
    13 | value is required. Ranges from {0, 1} and often used for comparison over
       |                                ^
checkRd: (-1) KCI.Rd:44: Lost braces
    44 |  \item \code{testStatistic} the statistic Tr(K_{(ddot{(Y)}|X)} * K_{(E|X)})
       |                                                ^
checkRd: (-1) KCI.Rd:44: Lost braces
    44 |  \item \code{testStatistic} the statistic Tr(K_{(ddot{(Y)}|X)} * K_{(E|X)})
       |                                                      ^
checkRd: (-1) KCI.Rd:44: Lost braces; missing escapes or markup?
    44 |  \item \code{testStatistic} the statistic Tr(K_{(ddot{(Y)}|X)} * K_{(E|X)})
       |                                                                    ^
Namespaces in Imports field not imported from:
  ‘kernlab’ ‘purrr’ ‘survminer’ ‘tidyverse’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) mya.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mya.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mya.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mya.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mya.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
Running ‘confintrob_test.R’ [22s/27s]
  Comparing ‘confintrob_test.Rout’ to ‘confintrob_test.Rout.save’ ...64c64
<       AIC       BIC    logLik -2*log(L)  df.resid 
---
>      AIC      BIC   logLik deviance df.resid 
203c203
<       AIC       BIC    logLik -2*log(L)  df.resid 
---
>      AIC      BIC   logLik deviance df.resid 
  Running ‘parallelTest.R’ [9s/19s]
  Running ‘varComprob_createParamSampleFunction.R’ [22s/27s]
  Comparing ‘varComprob_createParamSampleFunction.Rout’ to ‘varComprob_createParamSampleFunction.Rout.save’ ... OK
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘mvtnorm’
  All declared Imports should be used.
checkRd: (-1) binary_class_cm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binary_class_cm.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binary_class_cm.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binary_class_cm.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
Found the following files/directories:
  ‘design_names.csv’ ‘design_numbers.csv’
  ‘encoded_orthogonal_factorial_design.csv’
  ‘orthogonal_factorial_design.csv’
Namespaces in Imports field not imported from:
  ‘lwgeom’ ‘s2’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘Hmisc’ ‘dplyr’ ‘foreign’ ‘lavaan’ ‘openxlsx’ ‘purrr’ ‘semTools’
  ‘shinyWidgets’ ‘stringr’ ‘summarytools’ ‘waiter’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘scales’ ‘sna’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘api-get_datalog.R’ ‘api-get_device.R’ ‘api-get_devices.R’
    ‘api-get_element.R’ ‘api-get_elements.R’ ‘api-get_project.R’
    ‘api-get_projects.R’ ‘api-get_users_me.R’ ‘client.R’
File ‘ConsReg/libs/ConsReg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Running examples in ‘constrainedKriging-Ex.R’ failed
The error most likely occurred in:

> ### Name: CKrige
> ### Title: Constrained, Covariance-matching Constrained and Universal
> ###   Kriging
> ### Aliases: CKrige CKrige.points CKrige.polygons CKrige-methods
> ###   CKrige,formula,data.frame,formula,preCKrigePoints-method
> ###   CKrige,formula,data.frame,formula,preCKrigePolygons-method
> ###   print.CKrige.exout.polygons summary.CKrige.exout.polygons
> ###   print.CKrige.exout.points summary.CKrige.exout.points
> ### Keywords: methods
> 
> ### ** Examples
> 
> 
> 
> 
> ### example 7: universal block Kriging of mean over whole domain
> ### cf chapter 4 of vignette of package georob
> ### (https://CRAN.R-project.org/package=georob)
> if(!requireNamespace("gstat", quietly = TRUE)){
+   stop("install package gstat to run example")
+ }
> ### load coalash data
> data(coalash, package="gstat")
> 
> ### generate SpatialPointsDataFrame covering entire domain of coalash data
> coalash.domain <- rbind(c(0.5,0), c(16.5,0), c(16.5,24), c(0.5,24), c(0.5,0))
> coalash.domain <- SpatialPolygonsDataFrame(
+   SpatialPolygons(list(Polygons(list(Polygon(coalash.domain)), ID= "domain"))),
+   data=data.frame(x=8.5,y=12,row.names="domain"))
> 
> ### universal block Kriging
> preCK_coalash <- preCKrige(newdata = coalash.domain, model = covmodel(modelname =
+     "exponential", mev = 1.023, nugget = 0, variance = 0.268,
+     scale = 1.907), pwidth = 16, pheight = 24)
> UK_coalash <- CKrige(formula = coalash ~ x, data = coalash,
+   locations = ~ x+y, object = preCK_coalash, method = 1)
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Specified C++11: please drop specification unless essential
checkRd: (-1) getConvexHull.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getConvexHull.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getConvexHull.Rd:30: Lost braces in \itemize; meant \describe ?
File ‘contoureR/libs/contoureR.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cumulative_split_code.Rd’ ‘decompose_contrasts.Rd’
    ‘expand_formulas.R’ ‘factor_coercion_messages.R’
    ‘glimpse_contrasts.R’ ‘make_parameters.R’ ‘orth_polynomial_code.Rd’
    ‘raw_polynomial_code.Rd’ ‘use_contrast.R’ ‘utils_check_labels.R’
    ‘utils_trymatch.R’
checkRd: (-1) CovrgPlot.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{plotCI}{a vector of up to 4 numbers out of the set {1,2,3,4}, corresponding to which
       |                                                          ^
Specified C++11: please drop specification unless essential
checkRd: (-1) copCAR.Rd:40: Lost braces
    40 |        item{\code{maxit}}{the maximum number of iterations to be used by \code{\link{optim}} when optimizing the objective function. Defaults to \code{1000}.}
       |            ^
checkRd: (-1) copCAR.Rd:40: Lost braces
    40 |        item{\code{maxit}}{the maximum number of iterations to be used by \code{\link{optim}} when optimizing the objective function. Defaults to \code{1000}.}
       |                          ^
checkRd: (-1) condQestCopC.Rd:45: Lost braces; missing escapes or markup?
    45 | obtain the conditional qth quantile of Y_{n+1} given {Y1,...,Yn}.
       |                                          ^
checkRd: (-1) condQestCopC.Rd:45: Lost braces; missing escapes or markup?
    45 | obtain the conditional qth quantile of Y_{n+1} given {Y1,...,Yn}.
       |                                                      ^
checkRd: (-1) condQestCopC.Rd:40: Lost braces; missing escapes or markup?
    40 | \code{condQestCopC} returns the conditional tao-th quantile of Y_{n+1} given {Y1,...,Yn}
       |                                                                  ^
checkRd: (-1) condQestCopC.Rd:40: Lost braces; missing escapes or markup?
    40 | \code{condQestCopC} returns the conditional tao-th quantile of Y_{n+1} given {Y1,...,Yn}
       |                                                                              ^
checkRd: (-1) ComputeCope.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:57-61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DrawContour.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Draws the contour {f=c}.}
       |                          ^
checkRd: (-1) DrawContour.Rd:20: Lost braces; missing escapes or markup?
    20 | Draws the contour {f=c}.
       |                   ^
checkRd: (-1) cope.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cope.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cope.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cope.Rd:35: Lost braces in \itemize; meant \describe ?
File ‘cord/libs/cord.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) getSurface.Rd:22: Lost braces
    22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
       |                                                                                                                                                                                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘refresh_coronvirus.R’
Namespace in Imports field not imported from: ‘devtools’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RColorBrewer’ ‘ggplot2’ ‘re2’ ‘rmarkdown’ ‘shinyWidgets’
  ‘shinydashboard’ ‘shinyjs’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘data.table’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘corrRect.hclust.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘corrBarplot.R’ ‘corrNetwork.R’
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
checkRd: (-1) cosmoFns-package.Rd:34: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘jpeg’
  All declared Imports should be used.
checkRd: (-1) summary_fitlist.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘gstat’
  All declared Imports should be used.
File ‘covBM/libs/covBM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘covfefe_inauguration.txt’
Namespace in Imports field not imported from: ‘lubridate’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘httr’ ‘stringr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘mapview’ ‘plotly’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘usethis’
  All declared Imports should be used.
File ‘covr/libs/covr.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘FORMALS’, ‘SET_BODY’,
    ‘SET_CLOENV’, ‘SET_FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘misc3d’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘mediation’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘coxphf-tidiers.R’
Specified C++11: please drop specification unless essential
File ‘CoxPlus/libs/CoxPlus.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) gen_data.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gen_data.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gen_data.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot.coxr.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot.coxr.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot.coxr.Rd:38-39: Lost braces in \itemize; \value handles \item{}{} directly
Specified C++11: please drop specification unless essential
checkRd: (-1) coxph.RT.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) coxph.RT.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) coxph.RT.Rd:59-71: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘Rdpack’ ‘grDevices’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
File ‘cpm/libs/cpm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘cpp11qpdf/libs/cpp11qpdf.so’:
  Found ‘_ZNSt3__14cerrE’, possibly from ‘std::cerr’ (C++)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘_ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘printf’, possibly from ‘printf’ (C)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘putchar’, possibly from ‘putchar’ (C)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘srandom’, possibly from ‘srandom’ (C)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘libqpdf/libstatqpdf.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘RcppProgress’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
File ‘cqrReg/libs/cqrReg.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) sharedat.Rd:23: Lost braces
    23 | \doi{10.7910/DVN/YXMQZM}{Harvard dataverse}
       |                         ^
checkRd: (-1) crwPredict.Rd:54-68: Lost braces
    54 | \item("predTime"){
       |                  ^
checkRd: (-1) crwPredict.Rd:59: Lost braces
    59 |  no longer the default (see \item{return.type}). If the original data were 
       |                                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pick_colors.R’ ‘scale_crayons.Rd’
Problems with news in ‘NEWS.md’:
No news entries found.
File ‘credule/libs/credule.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘DT’ ‘gbm’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘CRMetrics.R’ ‘CRMetrics.Rd’ ‘inner_functions.R’
checkRd: (-1) normFit.Rd:39: Lost braces; missing escapes or markup?
    39 | {analytes}}
       | ^
checkRd: (-1) normPred.Rd:27: Lost braces
    27 | ode{standards}, \code{analytes}}
       |    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘crop.R’ ‘helpers.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘officer.R’
Namespaces in Imports field not imported from:
  ‘R6’ ‘dplyr’ ‘r6extended’
  All declared Imports should be used.
checkRd: (-1) confRegCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the constrained MLEs given beta_{0r}.}
       |                   ^
checkRd: (-1) confRegCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the constrained MLEs given beta_{0r}.}
       |                                                                                    ^
checkRd: (-1) confRegCCR.Rd:27: Lost braces; missing escapes or markup?
    27 | beta_{0r} in \code{paramVals}, which are those of interest, usually the ones
       |      ^
checkRd: (-1) confRegUCRandUCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the unconstrained MLEs given beta_{0r}.}
       |                   ^
checkRd: (-1) confRegUCRandUCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the unconstrained MLEs given beta_{0r}.}
       |                                                                                      ^
checkRd: (-1) confRegUCRandUCCR.Rd:27: Lost braces; missing escapes or markup?
    27 | beta_{0r} in \code{paramVals}, which are those of interest, usually the ones
       |      ^
File ‘crrSC/libs/crrSC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘helpers.R’
checkRd: (-1) cruts-package.Rd:21: Lost braces
    21 | section{Dependencies}{
       |        ^
checkRd: (-1) cruts-package.Rd:21-24: Lost braces
    21 | section{Dependencies}{
       |                      ^
checkRd: (-1) cruts-package.Rd:26: Lost braces
    26 | section{Citation}{
       |        ^
checkRd: (-1) cruts-package.Rd:26-28: Lost braces
    26 | section{Citation}{
       |                  ^
checkRd: (-1) cruts-package.Rd:30-32: Lost braces
    30 | references{
       |           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘crypto_global_quotes.R’ ‘crypto_history.R’ ‘crypto_info.R’
    ‘crypto_listings.R’
checkRd: (-1) calculate_cell_volume.Rd:16: Lost braces; missing escapes or markup?
    16 | V A real number. The volume (in angstroms^3 or angstroms^{-3})
       |                                                          ^
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘extrafont’ ‘future’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘epitools’ ‘rpivotTable’ ‘shinyMatrix’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘rstantools’ ‘statmod’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘caret’ ‘datasets’ ‘dplyr’ ‘e1071’ ‘party’ ‘rhandsontable’ ‘rpart’
  ‘rpart.plot’ ‘shiny’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘caret’ ‘datasets’ ‘dplyr’ ‘e1071’ ‘party’ ‘rhandsontable’ ‘rpart’
  ‘rpart.plot’ ‘shiny’
  All declared Imports should be used.
Found the following files/directories:
  ‘Hello.csv’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘connection-config.R’ ‘read-float.R’ ‘read-hex.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_by_blocks.R’ ‘balance_by_blocks.Rd’ ‘balance_matrix.R’
    ‘balance_matrix.Rd’ ‘make_non_negative.Rd’ ‘round_by_blocks.Rd’
    ‘round_matrix.R’ ‘round_matrix.Rd’ ‘round_vector.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘accessors.Rd’ ‘as-cubble.R’ ‘as_cubble.Rd’ ‘check-key.R’
    ‘climate-data.Rd’ ‘covid.Rd’ ‘cubble-attrs.R’ ‘cubble-class.R’
    ‘cubble-print.R’ ‘dplyr.R’ ‘dplyr.Rd’ ‘face-spatial-temporal.R’
    ‘face.Rd’ ‘glyph.R’ ‘glyph.Rd’ ‘make_spatial_sf.Rd’
    ‘make_temporal_tsibble.Rd’ ‘matching.R’ ‘matching.Rd’ ‘netcdf.R’
    ‘sf.R’ ‘test-data.Rd’ ‘tsibble.R’ ‘tsibble.Rd’ ‘unfold.R’ ‘unfold.Rd’
Namespace in Imports field not imported from: ‘pspearman’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘TCGAbiolinks’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘create_cure_dataframe.R’ ‘cure_plot.R’ ‘resample_residuals.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_curriculum_graph.R’
Found the following files/directories:
  ‘Adjusted_p_values.pdf’ ‘Effect_Size_Curves.pdf’
  ‘Mean_Difference_Curves.pdf’
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) fit.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CytofTree.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytomeTree.Rd:33-34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytomeTree.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytomeTree.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytomeTree.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RetrievePops.Rd:20-21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RetrievePops.Rd:22-23: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘titanic’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘d3TreeFunctions.R’
checkRd: (-1) fpiter.Rd:55-58: Lost braces
    55 |     \code{tol}{  A small, positive scalar that determines when iterations
       |               ^
checkRd: (-1) fpiter.Rd:60-61: Lost braces
    60 |     \code{maxiter}{  An integer denoting the maximum limit on the number of
       |                   ^
checkRd: (-1) fpiter.Rd:63-65: Lost braces
    63 |     \code{trace}{  A logical variable denoting whether some of the intermediate
       |                 ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘clean_land_points.R’ ‘join_mpa_data.R’ ‘join_mpa_data.Rd’
    ‘join_ports_locations.R’ ‘model_vms.R’ ‘vms_clean.R’
checkRd: (-1) formatScientificTeX.Rd:33: Lost braces; missing escapes or markup?
    33 | function will return  " 3.0\\\\times 10^{2}"
       |                                         ^
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
File ‘DALY/libs/DALY.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘foreach’
  All declared Imports should be used.
checkRd: (-1) processFlow.Rd:14: Lost braces
    14 | \item{roundDigits}{Integer. If NA, numerics are not rounded before comparison. If /code{roundDigits} is specified, numerics are 
       |                                                                                        ^
checkRd: (-1) processFlow.Rd:15: Lost braces
    15 | rounded to /code{roundDigits} decimal places using \link[base]{round}.}
       |                 ^
checkRd: (-1) data_edit.Rd:137: Lost braces
   137 | code{data_edit} is a shiny application built on \code{rhandsontable} that is
       |     ^
File ‘DataGraph/libs/DataGraph.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following files/directories:
  ‘my new data set.rds’
checkRd: (-1) build_date_factor.Rd:15: Lost braces; missing escapes or markup?
    15 | Map a vector of dates to a factor at one of these levels {"yearmonth", "yearquarter", "quarter", "month"}
       |                                                          ^
checkRd: (-1) build_date_factor.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{type}{One of {"year", "yearquarter", "yearmonth", "quarter", "month"}}
       |                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘drwho_directors.Rd’ ‘drwho_episodes.Rd’ ‘drwho_writers.Rd’
    ‘torchwood_directors.Rd’ ‘torchwood_episodes.Rd’
    ‘torchwood_writers.Rd’
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘jsonlite’ ‘methods’
  All declared Imports should be used.
File ‘data.table/libs/data_table.so’:
  Found non-API calls to R: ‘OBJECT’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
    ‘SET_TRUELENGTH’, ‘TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) plot.mleBb.Rd:48: Lost braces
    48 |   \ code{size} is extracted from argument \code{x}.
       |         ^
checkRd: (-1) value_missing_table.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) value_missing_table.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘knitr’ ‘tidyverse’ ‘vctrs’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘softImpute’
  All declared Imports should be used.
checkRd: (-1) CI_mc.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{i}{the row index of the interest entry X_{i,j}}
       |                                                ^
checkRd: (-1) CI_mc.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{j}{the row index of the interest entry X_{i,j}}
       |                                                ^
Namespace in Imports field not imported from: ‘ggplot2’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘ggplot2’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘html5’
  All declared Imports should be used.
checkRd: (-1) data.Rd:11: Lost braces
    11 | \doi{10.1007/s40258-021-00647-3}{DOI}
       |                                 ^
Problems with news in ‘NEWS.md’:
No news entries found.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘usethis’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) kernel.assign.Rd:27: Lost braces; missing escapes or markup?
    27 |  {q = [0, 1]}. Kernels are of the Müller-Wang type ("MW"), Müller type ("M")
       |  ^
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘MASS’ ‘qpdf’
  All declared Imports should be used.
checkRd: (-1) detectAgeInterval.Rd:10: Lost braces
    10 | \item{Dat}{a \code{data.frame} containing a column called \code{Age}, or code{age}.}
       |                                                                              ^
checkRd: (-1) detectSex.Rd:10: Lost braces
    10 | \item{Dat}{a \code{data.frame} containing a column called \code{Sex}, or code{sex}.}
       |                                                                              ^
checkRd: (-1) ggbgetAgesFit.Rd:28: Lost braces
    28 | code{\link{ggbChooseAges}}
       |     ^
Namespace in Imports field not imported from: ‘shinydisconnect’
  All declared Imports should be used.
checkRd: (-1) plot.ddpcr_plate.Rd:136-137: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ddpcr_plate.Rd:138-139: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ddpcr_plate.Rd:140-141: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘reticulate’ ‘tensorflow’
  All declared Imports should be used.
checkRd: (-1) deconv.Rd:85: Lost braces; missing escapes or markup?
    85 |     \code{tg}, std. error of \eqn{g}, \eqn{G} (the cdf of {g}),
       |                                                           ^
Problems with news in ‘NEWS.md’:
No news entries found.
Namespaces in Imports field not imported from:
  ‘Hmisc’ ‘class’ ‘e1071’ ‘gam’ ‘gbm’ ‘glmnet’ ‘randomForest’ ‘weights’
  ‘xgboost’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
checkRd: (-1) deepNN-package.Rd:18: Lost braces
    18 | section{Dependencies}{
       |        ^
checkRd: (-1) deepNN-package.Rd:18-21: Lost braces
    18 | section{Dependencies}{
       |                      ^
checkRd: (-1) deepNN-package.Rd:23: Lost braces
    23 | section{Citation}{
       |        ^
checkRd: (-1) deepNN-package.Rd:23-25: Lost braces
    23 | section{Citation}{
       |                  ^
checkRd: (-1) deepNN-package.Rd:27-38: Lost braces
    27 | references{
       |           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘deeptrafo.Rd’ ‘ensembles.R’ ‘methods.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘defineOptions-package.Rd’ ‘define_option.Rd’ ‘parse_with_defs.Rd’
    ‘summary.parsed_result.Rd’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘api.R’ ‘category_blur.R’ ‘deident.R’
Namespaces in Imports field not imported from:
  ‘knitr’ ‘shinyBS’ ‘shinyMatrix’
  All declared Imports should be used.
checkRd: (-1) deltaPlot.Rd:28: Lost braces
    28 |  \item{purify}{logical: should item purification be performed? (Default is code{FALSE}). See \bold{Details}.}
       |                                                                                ^
Found the following files/directories:
  ‘res.pdf’ ‘res1.jpg’
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Caswell.R’
Found the following files/directories:
  ‘smd_table.docx’
checkRd: (-1) kin.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:53-61: Lost braces
    53 | {\itemize{
       | ^
checkRd: (-1) kin.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:56-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:59-67: Lost braces
    59 | {\itemize{
       | ^
checkRd: (-1) kin2sex.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kin2sex.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) scramb.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) conifersIP.Rd:9: Lost braces; missing escapes or markup?
     9 | \code{conifersIP} {has following variables:}
       |                   ^
checkRd: (-1) conifersIP.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) conifersIP.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) conifersIP.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) conifersIP.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) conifersIP.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sync.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sync.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sync.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sync.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sync.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sync.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sync.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DendSer.Rd:50: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘convert_slwer_to_tidy.R’ ‘download_pdfwer_srilanka.R’
    ‘get_pdflinks_srilanka.R’ ‘min_max.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) barriers.Rd:127: Escaped LaTeX specials: \$
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.N’ ‘.Nmiss’ ‘.Q1’ ‘.Q3’ ‘.factorN’ ‘.factorNmiss’ ‘.factorQ1’
  ‘.factorQ3’ ‘.factormax’ ‘.factormean’ ‘.factormedian’ ‘.factormin’
  ‘.factorsd’ ‘.max’ ‘.mean’ ‘.median’ ‘.min’ ‘.sd’
Namespace in Imports field not imported from: ‘datasets’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mod_template_srv.R’
checkRd: (-1) detour-shiny.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{expr}{an expression that generates a {detourr} widget}
       |                                            ^
checkRd: (-1) show_sage.Rd:80: Lost braces; missing escapes or markup?
    80 | supported using {crosstalk}. The set of interactive controls available are:
       |                 ^
checkRd: (-1) show_scatter.Rd:67: Lost braces; missing escapes or markup?
    67 | supported using {crosstalk}. The set of interactive controls available are:
       |                 ^
checkRd: (-1) show_scatter_internal.Rd:65: Lost braces; missing escapes or markup?
    65 | supported using {crosstalk}. The set of interactive controls available are:
       |                 ^
checkRd: (-1) show_slice.Rd:76: Lost braces; missing escapes or markup?
    76 | supported using {crosstalk}. The set of interactive controls available are:
       |                 ^
checkRd: (-1) tour_aes.Rd:11: Lost braces; missing escapes or markup?
    11 | Variables are evaluated using {tidyselect} syntax.}
       |                               ^
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘RColorBrewer’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘utils’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aov.R’ ‘create_subtree.R’ ‘create_tree.R’ ‘monte_carlo.R’ ‘node.R’
    ‘oat.R’ ‘option.R’ ‘sensitivity_index.R’ ‘synoptique.R’ ‘tree.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘differentiate.R’ ‘gradient.R’ ‘simplify.R’
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dggridR.R’
checkRd: (-1) AIC.dglars.Rd:47: Lost braces
    47 | \item{comp}{the measures of model complexity used to compute the measure of goodness-of-fit. It is equal to \code{npar} when code{complexity = "df"};}
       |                                                                                                                                  ^
checkRd: (-1) dglars.Rd:258: Lost braces
   258 |                 \item{\code{7}}{maximum number of solution points ('code{np}') reached.}
       |                                                                         ^
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) dHSIC-package.Rd:32: Lost braces
    32 |   Gretton, A., K. Fukumizu, C. H. Teo, L. Song, B. Sch{\"o}lkopf and
       |                                                       ^
checkRd: (-1) dHSIC-package.Rd:36: Lost braces
    36 |   Pfister, N., P. B{\"u}hlmann, B. Sch{\"o}lkopf and J. Peters (2017).
       |                    ^
checkRd: (-1) dHSIC-package.Rd:36: Lost braces
    36 |   Pfister, N., P. B{\"u}hlmann, B. Sch{\"o}lkopf and J. Peters (2017).
       |                                       ^
checkRd: (-1) dhsic.Rd:84: Lost braces
    84 |   Gretton, A., K. Fukumizu, C. H. Teo, L. Song, B. Sch{\"o}lkopf and
       |                                                       ^
checkRd: (-1) dhsic.Rd:88: Lost braces
    88 |   Pfister, N., P. B{\"u}hlmann, B. Sch{\"o}lkopf and J. Peters (2017).
       |                    ^
checkRd: (-1) dhsic.Rd:88: Lost braces
    88 |   Pfister, N., P. B{\"u}hlmann, B. Sch{\"o}lkopf and J. Peters (2017).
       |                                       ^
checkRd: (-1) dhsic.test.Rd:124: Lost braces
   124 |   Gretton, A., K. Fukumizu, C. H. Teo, L. Song, B. Sch{\"o}lkopf and
       |                                                       ^
checkRd: (-1) dhsic.test.Rd:128: Lost braces
   128 |   Pfister, N., P. B{\"u}hlmann, B. Sch{\"o}lkopf and J. Peters (2017).
       |                    ^
checkRd: (-1) dhsic.test.Rd:128: Lost braces
   128 |   Pfister, N., P. B{\"u}hlmann, B. Sch{\"o}lkopf and J. Peters (2017).
       |                                       ^
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘diario.R’
checkRd: (-1) DIconvex.Rd:40: Lost braces; missing escapes or markup?
    40 |  {Paul Schneider <paul.schneider@usi.ch>}{}
       |  ^
checkRd: (-1) define.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) define.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘R6’ ‘dplyr’ ‘purrr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) did_imputation.Rd:74: Lost braces; missing escapes or markup?
    74 | form average treatment effects for groups of {it}.
       |                                              ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘diem.r’ ‘internal.r’ ‘rank2map.r’ ‘vcf2diem.r’
File ‘diffIRT/libs/diffIRT.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) sensitivitySamplerManual-DPMech-function-numeric-numeric-numeric-method.Rd:25: Lost braces
    25 | \item{k}{order statistic index in {1,...,\code{m}}.}
       |                                   ^
checkRd: (-1) sensitivitySamplerManual-DPMechNumeric-function-numeric-numeric-numeric-method.Rd:25: Lost braces
    25 | \item{k}{order statistic index in {1,...,\code{m}}.}
       |                                   ^
checkRd: (-1) sensitivitySamplerManual.Rd:22: Lost braces
    22 | \item{k}{order statistic index in {1,...,\code{m}}.}
       |                                   ^
checkRd: (-1) simulate_diff_tables.Rd:72: Lost braces; missing escapes or markup?
    72 |   {The Sharma-Song test} {\code{\link[DiffXTables]{sharma.song.test}}}
       |   ^
checkRd: (-1) simulate_diff_tables.Rd:74: Lost braces; missing escapes or markup?
    74 |   {The comparative chi-squared test} {\code{\link[DiffXTables]{cp.chisq.test}}}
       |   ^
checkRd: (-1) simulate_diff_tables.Rd:76: Lost braces; missing escapes or markup?
    76 |   {The heterogeneity test} {\code{\link[DiffXTables]{heterogeneity.test}}}
       |   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dilp_functions.R’
checkRd: (-1) DIME.Rd:272: Lost braces; missing escapes or markup?
   272 | \item{name}{the name of the model {"GNG", "iNUDGE","NUDGE"} where
       |                                   ^
Specified C++11: please drop specification unless essential
66,67d65
< OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
< OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
File ‘dipsaus/libs/dipsaus.so’:
  Found non-API calls to R: ‘CLOENV’, ‘ENCLOS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘readr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) mc_attitudes.Rd:52: Lost braces
    52 | P\'{a}ez, A. (2013). Mapping travelers’ attitudes: does space matter?. Journal of Transport Geography, 26, 117-125. (https://doi.org/10.1016/j.jtrangeo.2012.09.002)
       |    ^
checkRd: (-1) mc_commute.csv.Rd:49: Lost braces
    49 | Whalen, K. E., P\'{a}ez, A., & Carrasco, J. A. (2013). Mode choice of university students commuting to school and the role of active travel. Journal of Transport Geography, 31, 132-142. (https://doi.org/10.1016/j.jtrangeo.2013.06.008)
       |                   ^
checkRd: (-1) mc_commute_long.Rd:74: Lost braces
    74 | Whalen, K. E., P\'{a}ez, A., & Carrasco, J. A. (2013). Mode choice of university students commuting to school and the role of active travel. Journal of Transport Geography, 31, 132-142. (https://doi.org/10.1016/j.jtrangeo.2013.06.008)
       |                   ^
checkRd: (-1) mc_commute_wide.Rd:87: Lost braces
    87 | Whalen, K. E., P\'{a}ez, A., & Carrasco, J. A. (2013). Mode choice of university students commuting to school and the role of active travel. Journal of Transport Geography, 31, 132-142. (https://doi.org/10.1016/j.jtrangeo.2013.06.008)
       |                   ^
checkRd: (-1) mc_modality.Rd:50: Lost braces
    50 | Lavery, T., P\'{a}ez, A., & Kanaroglou, P.S. (2013). Driving out of choices: An investigation of transport modality in a university sample. Transportation Research Part A: Policy and Practice, 57:37-46 (https://doi.org/10.1016/j.tra.2013.09.010)
       |                ^
checkRd: (-1) cIndex.Rd:32: Lost braces; missing escapes or markup?
    32 | [a_{q-1}, a_q) are available.
       |    ^
checkRd: (-1) cIndexCompRisks.Rd:31: Lost braces; missing escapes or markup?
    31 | [a_{q-1}, a_q) are available.
       |    ^
checkRd: (-1) dataCensoring.Rd:78: Escaped LaTeX specials: \&
checkRd: (-1) dataLong.Rd:170: Escaped LaTeX specials: \&
checkRd: (-1) dataLongCompRisksTimeDep.Rd:130: Escaped LaTeX specials: \&
checkRd: (-1) dataLongMultiSpell.Rd:123: Escaped LaTeX specials: \&
checkRd: (-1) dataLongTimeDep.Rd:96: Escaped LaTeX specials: \&
checkRd: (-1) estMargProb.Rd:23: Lost braces; missing escapes or markup?
    23 | a_2), ..., [a_{q-1}, a_q), [a_q, Inf).
       |               ^
checkRd: (-1) estMargProbCompRisks.Rd:24: Lost braces; missing escapes or markup?
    24 | a_2), ..., [a_{q-1}, a_q), [a_q, Inf).
       |               ^
checkRd: (-1) estSurv.Rd:23: Lost braces; missing escapes or markup?
    23 | a_2), ..., [a_{q-1}, a_q), [a_q, Inf).
       |               ^
checkRd: (-1) estSurvCompRisks.Rd:24: Lost braces; missing escapes or markup?
    24 | a_2), ..., [a_{q-1}, a_q), [a_q, Inf).
       |               ^
checkRd: (-1) lifeTable.Rd:21: Lost braces; missing escapes or markup?
    21 | [a_0, a_1), [a_1, a_2), ..., [a_{q-1}, a_q) ("character vector")}
       |                                 ^
checkRd: (-1) csv_to_disk.frame.Rd:56: Lost braces; missing escapes or markup?
    56 | strings, and you are encouraged to use {fasttime} to convert the strings to
       |                                        ^
checkRd: (-1) purrr_as_mapper.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{.f}{a normal function or purrr syntax function i.e. `~{ ...code...}`}
       |                                                             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dht2.R’
File ‘distcomp/libs/distcomp.so’:
  Found non-API call to R: ‘NAMED’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dev_package.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘proxy’
  All declared Imports should be used.
checkRd: (-1) dapply.Rd:27-30: Lost braces
    27 | udf <- function(x){
       |                   ^
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘rlang’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mixture.R’
Namespace in Imports field not imported from: ‘vctrs’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘truncnorm’
  All declared Imports should be used.
Packages required but not available:
  'loon', 'loon.ggplot', 'loon.shiny', 'loon.tourr'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Namespaces in Imports field not imported from:
  ‘gridExtra’ ‘plotly’ ‘pryr’ ‘rpart’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Changes to previous versions
    Minor changes
    Fixes
    Previous Versions
checkRd: (-1) dma.Rd:47: Lost braces; missing escapes or markup?
    47 | When y_t is controlled, only y_{t-delay-1} and before 
       |                                ^
checkRd: (-1) dma.Rd:64: Lost braces; missing escapes or markup?
    64 |                  estimate of theta_{j-1} for model k at t}
       |                                    ^
checkRd: (-1) dma.Rd:66: Lost braces; missing escapes or markup?
    66 |                  variance of theta_{j-1} for model k at t}
       |                                    ^
checkRd: (-1) dma.Rd:68: Lost braces; missing escapes or markup?
    68 |                  estimate of theta_{j-1} at t}
       |                                    ^
checkRd: (-1) dma.Rd:70: Lost braces; missing escapes or markup?
    70 |                  variance of thetahat_{j-1} at t}
       |                                       ^
checkRd: (-1) dca.Rd:24: Lost braces; missing escapes or markup?
    24 | \eqn{neglinks_{ij} = 1} means chunklet \code{i} and chunklet {j}
       |                                                              ^
checkRd: (-1) dca.Rd:26: Lost braces; missing escapes or markup?
    26 | \eqn{neglinks_{ij} = 0} means chunklet \code{i} and chunklet {j}
       |                                                              ^
checkRd: (-1) rca.Rd:57: Lost braces; missing escapes or markup?
    57 |       e.g. {1, 3, 7} and {4, 6}, might belong to the
       |            ^
checkRd: (-1) rca.Rd:57: Lost braces; missing escapes or markup?
    57 |       e.g. {1, 3, 7} and {4, 6}, might belong to the
       |                          ^
checkRd: (-1) scale_color_dMod.Rd:10: Lost braces
    10 | \item{...}{arguments goint to code{scale_color_manual()}}
       |                                   ^
checkRd: (-1) scale_fill_dMod.Rd:10: Lost braces
    10 | \item{...}{arguments goint to code{scale_color_manual()}}
       |                                   ^
checkRd: (-1) trust.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:104: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:107-108: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:109-110: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:111-112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:113-114: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:115-122: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:123-126: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:127: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:128-131: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:132-133: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:134-135: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:136-138: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trust.Rd:139-141: Lost braces in \itemize; \value handles \item{}{} directly
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) outliers.ranking.Rd:142: Lost braces; missing escapes or markup?
   142 |   max ( 0, ( |g_{y,i}| - |g_{x,i}| ) / ( |g_{y,i}| + |g_{x,i}| ) ),
       |                 ^
checkRd: (-1) outliers.ranking.Rd:142: Lost braces; missing escapes or markup?
   142 |   max ( 0, ( |g_{y,i}| - |g_{x,i}| ) / ( |g_{y,i}| + |g_{x,i}| ) ),
       |                             ^
checkRd: (-1) outliers.ranking.Rd:142: Lost braces; missing escapes or markup?
   142 |   max ( 0, ( |g_{y,i}| - |g_{x,i}| ) / ( |g_{y,i}| + |g_{x,i}| ) ),
       |                                             ^
checkRd: (-1) outliers.ranking.Rd:142: Lost braces; missing escapes or markup?
   142 |   max ( 0, ( |g_{y,i}| - |g_{x,i}| ) / ( |g_{y,i}| + |g_{x,i}| ) ),
       |                                                         ^
checkRd: (-1) outliers.ranking.Rd:143: Lost braces; missing escapes or markup?
   143 |   where g_{y,i} and g_{x,i} are the two groups involved in the merge at
       |           ^
checkRd: (-1) outliers.ranking.Rd:143: Lost braces; missing escapes or markup?
   143 |   where g_{y,i} and g_{x,i} are the two groups involved in the merge at
       |                       ^
checkRd: (-1) outliers.ranking.Rd:144: Lost braces; missing escapes or markup?
   144 |   step i, and g_{x,i} is the group which X belongs to. Note that if X
       |                 ^
checkRd: (-1) setCPT.O.Rd:85: Lost braces; missing escapes or markup?
    85 | statespace {0,1,2}, which this is *not* checked anywhere. Thus, if
       |            ^
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) dnr.Rd:12: Escaped LaTeX specials: \#
checkRd: (-1) beetle.Rd:13: Lost braces; missing escapes or markup?
    13 |     \item{\code{x}}{dose (log base 10 CS2mgl^{-1})}
       |                                              ^
Specified C++11: please drop specification unless essential
checkRd: (-1) py_select_interpreter.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Tell {reticulate} to use Python Conda version available on Domino Data Lab.}
       |             ^
checkRd: (-1) redisWorker.Rd:56: Lost braces; missing escapes or markup?
    56 | You can increase it by including a {timeout=n} argument value.
       |                                    ^
checkRd: (-1) startLocalWorkers.Rd:54: Lost braces; missing escapes or markup?
    54 | You can increase it by including a {timeout=n} argument value.
       |                                    ^
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    New features
Namespace in Imports field not imported from: ‘gridExtra’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘DoseFinding’ ‘Rsolnp’ ‘ggplot2’ ‘kableExtra’ ‘knitr’
  ‘latticeExtra’ ‘purrr’ ‘readxl’ ‘shinyBS’ ‘shinyWidgets’ ‘shinyjs’
  ‘stringr’ ‘utils’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Found the following files/directories:
  ‘myfile.ps’ ‘myfile.svg’
checkRd: (-1) downscale.Rd:9: Lost braces; missing escapes or markup?
     9 | \item{occupancies}{Either a data frame containing two columns or an object of class \code{"upgrain"} from the \code{\link{upgrain}} function. If using a data frame the first column must be the grain sizes (cell area in squared units e.g. km^{2}). The second column is the proportion of occupancies at each grain size.}
       |                                                                                                                                                                                                                                                  ^
checkRd: (-1) ensemble.downscale.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{new.areas}{vector of grain sizes (in squared units e.g. km^{2}) for which area of occupancy will be predicted.}
       |                                                                  ^
checkRd: (-1) hui.downscale.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{new.areas}{vector of grain sizes as cell area (in same units as cell.width but squared e.g. km^{2}) at fine scales for model prediction.}
       |                                                                                                      ^
checkRd: (-1) predict.downscale.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{new.areas}{vector of grain sizes (in squared units e.g. km^{2}) for which area of occupancy will be predicted.}
       |                                                                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dpkg_release_gh.R’ ‘read_dpkg.Rd’ ‘stow.R’ ‘stow.Rd’
Namespaces in Imports field not imported from:
  ‘tidyr’ ‘tidyverse’
  All declared Imports should be used.
File ‘dplyr/libs/dplyr.so’:
  Found non-API calls to R: ‘LEVELS’, ‘OBJECT’, ‘PRVALUE’,
    ‘R_shallow_duplicate_attr’, ‘Rf_allocSExp’, ‘SET_PRCODE’,
    ‘SET_PRENV’, ‘SET_PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespaces in Imports field not imported from:
  ‘R6’ ‘dplyr’ ‘ggplot2’ ‘nloptr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘expm1x.Rd’ ‘pnt.Rd’ ‘pt_Witkovsky_Tab1.Rd’
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
checkRd: (-1) confint.dr4pl.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) gof-dr4pl.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) vcov.dr4pl.Rd:61: Escaped LaTeX specials: \&
Found the following files/directories:
  ‘drawBox.pdf’ ‘drawCircle.pdf’ ‘drawCurve.pdf’ ‘drawLine.pdf’
  ‘drawPoint.pdf’ ‘drawSettingsExample.pdf’ ‘drawText.pdf’ ‘export.pdf’
checkRd: (-1) EDcomp.Rd:88: Escaped LaTeX specials: \&
checkRd: (-1) LL.4.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) W4.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) algae.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) anova.drc.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) deguelin.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) gompertz.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) hatvalues.drc.Rd:43: Lost braces
    43 |   emph{Generalized Linear Models}, 
       |       ^
checkRd: (-1) hatvalues.drc.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) llogistic.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) modelFit.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) weibull1.Rd:67: Escaped LaTeX specials: \&
checkRd: (-1) excalibur.Rd:18: Lost braces; missing escapes or markup?
    18 |     \item{\code{GR}}{a numeric vector: germination rates in d^{-1}}
       |                                                               ^
checkRd: (-1) festuca.Rd:16: Lost braces; missing escapes or markup?
    16 |     \item{\code{GR}}{a numeric vector: germination rates in d^{-1}}
       |                                                               ^
checkRd: (-1) generate_individual_graphs.Rd:11: Lost braces
    11 | code{\link[DrDimont]{compute_correlation_matrices}}}
       |     ^
Specified C++11: please drop specification unless essential
checkRd: (-1) predict.drf.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.drf.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.drf.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.drf.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.drf.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.drf.Rd:40-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.drf.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.drf.Rd:44: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘goodmap.R’ ‘traits.R’
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) popsize.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) popsize_cond.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘base’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘mnormt’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘rJava’ ‘tools’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dscore.R’ ‘get_age_equivalent.R’
File ‘dsdp/libs/dsdp.so’:
  Found non-API call to R: ‘Rf_allocSExp’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mice_weights.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘QeFairHelpers.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) dsm_varprop.Rd:67: Lost braces
    67 | parameter uncertainty. See Wood, Pya & S{\"a}fken (2016) for more
       |                                         ^
checkRd: (-1) dsm_varprop.Rd:100: Lost braces
   100 | Wood, S.N., Pya, N. and S{\"a}fken, B. (2016) Smoothing parameter and model
       |                          ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘v_fmt_to_type.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) DTDAcif.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTDAcif.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) efron.petrosian.Rd:22: Lost braces
    22 |   \item{error}{ Numeric value. Maximum pointwise error when estimating the density associated to X (f) in two consecutive steps. If this is missing, it is $1e{-06}$.}
       |                                                                                                                                                               ^
checkRd: (-1) lynden.Rd:21: Lost braces
    21 |    \item{error}{ Numeric value. Maximum pointwise error when estimating the density associated to X (f) in two consecutive steps. If this is missing, it is $1e{-06}$.}
       |                                                                                                                                                                ^
checkRd: (-1) shen.Rd:24: Lost braces
    24 |   \item{error}{ Numeric value. Maximum pointwise error when estimating the density associated to X (f) in two consecutive steps. If this is missing, it is $1e{-06}$.}
       |                                                                                                                                                               ^
Specified C++11: please drop specification unless essential
checkRd: (-1) applied_crm.Rd:64: Lost braces; missing escapes or markup?
    64 | The empiric model is specified as F(d, beta) = d^{exp(beta)}. The logistic model is
       |                                                  ^
checkRd: (-1) Mena.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Mena.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DTWUMI_1gap_imputation.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DTWUMI_1gap_imputation.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
File ‘dualtrees/libs/dualtrees.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘digest’ ‘dplyr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘scale_duke_color_discrete.Rd’ ‘scale_duke_fill_discrete.Rd’
Namespace in Imports field not imported from: ‘DT’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘roxygen2’
  All declared Imports should be used.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘utils.R’
Namespaces in Imports field not imported from:
  ‘GenEst’ ‘expint’ ‘numDeriv’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) dyadic_similarity.Rd:27: Lost braces; missing escapes or markup?
    27 |      For example, the order {a, b, c} implies that a > b, a  > c, and b > c.
       |                             ^
Specified C++11: please drop specification unless essential
Running examples in ‘dynBiplotGUI-Ex.R’ failed
The error most likely occurred in:

> ### Name: dynBiplot
> ### Title: Dynamic Biplot
> ### Aliases: dynBiplot
> 
> ### ** Examples
> 
> dynBiplot("en")
Warning in tclRequire("tooltip") : Tcl package 'tooltip' not found
Error in tk2tip(w, tip) : cannot find tcl package 'tooltip'
Calls: dynBiplot -> panel1 -> tk2button -> tk2tip
Execution halted
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
    57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
       |                          ^
checkRd: (-1) generate_kinetics.Rd:57: Lost braces; missing escapes or markup?
    57 | By default, sampled from {-1, 1} with probabilities {.25, .75}.
       |                                                     ^
checkRd: (-1) new_log_level.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{log_style}{is a {crayon::style()} that will colorize
       |                       ^
checkRd: (-1) new_log_level.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{msg_style}{is a {crayon::style()} style that will gray scale the
       |                       ^
checkRd: (-1) sys_context.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{"sysname"} : {The operating system name.}
       |                    ^
checkRd: (-1) sys_context.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{"release"} : {The OS release.}
       |                    ^
checkRd: (-1) sys_context.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{"version"} : {The OS version.}
       |                    ^
checkRd: (-1) sys_context.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{"nodename"} : {A name by which the machine is known on the network (if any).}
       |                     ^
checkRd: (-1) sys_context.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{"machine"} : {A concise description of the hardware, often the CPU type.}
       |                    ^
checkRd: (-1) sys_context.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{"login"} : {The user's login name, or "unknown" if it cannot be ascertained.}
       |                  ^
checkRd: (-1) sys_context.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{"user"} : {The name of the real user ID, or "unknown" if it cannot be ascertained.}
       |                 ^
checkRd: (-1) sys_context.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{"r-ver"} : {R Version in (major).(minor) format.}
       |                  ^
checkRd: (-1) Produc.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Produc.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:40: Escaped LaTeX specials: \&
File ‘dynpred/libs/dynpred.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘getConstraintTests.R’ ‘getInvarCompTable.R’ ‘outputConstraintTab.R’
    ‘outputInvarCompTab.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) monitor_long_1d.Rd:33: Lost braces
    33 | If \code{side="upward"}{apply control charts that aim to detect upward shifts.} \cr
       |                        ^
checkRd: (-1) monitor_long_1d.Rd:34: Lost braces
    34 | If \code{side="downward"}{apply control charts that aim to detect downward shifts.} \cr
       |                          ^
checkRd: (-1) monitor_long_1d.Rd:35: Lost braces
    35 | If \code{side="both"}{apply control charts that aim to detect shifts in both sides}}
       |                      ^
checkRd: (-1) monitor_long_1d.Rd:38: Lost braces
    38 | If \code{chart="CUSUM"}{apply CUSUM charts.} \cr
       |                        ^
checkRd: (-1) monitor_long_1d.Rd:39: Lost braces
    39 | If \code{chart="EWMA"}{apply EWMA charts.}}
       |                       ^
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:123-125: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:126-133: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:134-135: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:136-137: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:163-165: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:166-173: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MHLS.Rd:48-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MHLS.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MHLS.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MHLS.Rd:55-56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MHLS.Rd:75: Lost braces; missing escapes or markup?
    75 | From the initial values, \code{B0} and {S0}, \code{\link{MHLS}} draws \code{beta} and \code{subgrad} samples.
       |                                        ^
checkRd: (-1) plot.earlyR.Rd:34-46: Lost braces
    34 | if (require(incidence)) {
       |                         ^
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
checkRd: (-1) surrogates_ews.Rd:31: Lost braces
    31 | \item{span}{parameter that controls the degree of smoothing (numeric between 0 and 100, Default 25). see more on loess{stats}}
       |                                                                                                                       ^
checkRd: (-1) surrogates_ews.Rd:33: Lost braces
    33 | \item{degree}{the degree of polynomial to be used for when loess fitting is applied, normally 1 or 2 (Default). see more on loess{stats}}
       |                                                                                                                                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘edl_set_token.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plottingfunctions.bgms.R’ ‘plottingfunctions.easybgm.R’
checkRd: (-1) ArrayToNc.Rd:30-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ArrayToNc.Rd:39-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ArrayToNc.Rd:51-76: Lost braces in \itemize; meant \describe ?
Namespace in Imports field not imported from: ‘rprojroot’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘scales’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘qcr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ebase_plot.R’ ‘ebase_prep.R’
checkRd: (-1) OCC1950.Rd:64: Lost braces
    64 |     \doi{10.18128/D010.V10.0}{IPUMS USA: Version 10.0 [dataset]. Minneapolis, MN: IPUMS}. 
       |                              ^
checkRd: (-1) Oil.Rd:45: Lost braces
    45 |       code{pt-pt-1} on a constant
       |           ^
checkRd: (-1) breaches.Rd:70-74: Lost braces
    70 |     \code{breach_end}{
       |                      ^
checkRd: (-1) breaches.Rd:75-78: Lost braces
    75 |     \code{year}{
       |                ^
checkRd: (-1) nuclearWeaponStates.Rd:82-92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nuclearWeaponStates.Rd:93-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nuclearWeaponStates.Rd:104-127: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nuclearWeaponStates.Rd:128-140: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nuclearWeaponStates.Rd:141-150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nuclearWeaponStates.Rd:151-161: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nuclearWeaponStates.Rd:162-172: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nuclearWeaponStates.Rd:173-191: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nuclearWeaponStates.Rd:192-219: Lost braces in \itemize; meant \describe ?
checkRd: (-1) e_pictorial.Rd:57-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) e_pictorial.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nesting.Rd:48: Lost braces
    48 | `{itemStyle: {color: 'red', fontBold: 'bold'}}`.
       |  ^
checkRd: (-1) nesting.Rd:48: Lost braces; missing escapes or markup?
    48 | `{itemStyle: {color: 'red', fontBold: 'bold'}}`.
       |              ^
checkRd: (-1) nesting.Rd:51: Lost braces; missing escapes or markup?
    51 | `{symbolSize: 4}`.
       |  ^
Namespace in Imports field not imported from: ‘pander’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
checkRd: (-1) ecolRxC.Rd:161-166: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:167-175: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:176-178: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:179-185: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:186-192: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:193-201: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:202-208: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:209-216: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ecolRxC.Rd:217-221: Lost braces in \itemize; meant \describe ?
File ‘ECOSolveR/libs/ECOSolveR.so’:
  Found ‘__printf_chk’, possibly from ‘printf’ (C)
    Objects: ‘ecos/libecos.a’, ‘ecos/libecos_bb.a’
  Found ‘printf’, possibly from ‘printf’ (C)
    Objects: ‘ecos/libecos.a’, ‘ecos/libecos_bb.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘graphics’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘Rmisc’ ‘rlang’
  All declared Imports should be used.
checkRd: (-1) transformFitness.Rd:25: Lost braces; missing escapes or markup?
    25 | minimization (most others). This function computes a factor from {-1, 1} for
       |                                                                  ^
checkRd: (-1) read.edf.Rd:30: Lost braces
    30 | Kemp B., V\"{a}rri, A., Rosa, A.C., Nielsen, K.D. and Gade, J. (1992).
       |             ^
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    TODO:
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘indicator_volunteers.R’
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘magrittr’ ‘tibble’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘reticulate’ ‘tensorflow’
  All declared Imports should be used.
checkRd: (-1) eesim.Rd:148-151: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eesim.Rd:152-155: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) eesim.Rd:156-158: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘PCovR’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘progress’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘rmarkdown’
  All declared Imports should be used.
Running ‘testthat.R’ [129s/149s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(effectsize)
  > 
  > test_check("effectsize")
  Starting 2 test processes
  [ FAIL 4 | WARN 0 | SKIP 12 | PASS 821 ]
  
  ══ Skipped tests (12) ══════════════════════════════════════════════════════════
  • On CRAN (12): 'test-convert_between.R:68:3', 'test-common_language.R:81:3',
    'test-effectsize.R:334:3', 'test-eta_squared_posterior.R:2:3',
    'test-eta_squared.R:111:3', 'test-eta_squared.R:373:3',
    'test-eta_squared.R:668:3', 'test-eta_squared.R:686:3',
    'test-eta_squared.R:700:3', 'test-interpret.R:139:3',
    'test-interpret.R:233:3', 'test-print.R:110:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-eta_squared.R:425:3'): include_intercept | afex ──────────────
  nrow(resE1) (`actual`) not identical to nrow(resE0) + 1L (`expected`).
  
    `actual`: 3
  `expected`: 4
  ── Failure ('test-eta_squared.R:426:3'): include_intercept | afex ──────────────
  nrow(resE1) (`actual`) not identical to nrow(resA1) (`expected`).
  
    `actual`: 3
  `expected`: 4
  ── Failure ('test-eta_squared.R:431:3'): include_intercept | afex ──────────────
  resE1[[2]][1] (`actual`) not equal to 0.9386555 (`expected`).
  
    `actual`: 0.29
  `expected`: 0.94
  ── Failure ('test-eta_squared.R:432:3'): include_intercept | afex ──────────────
  resE1[[2]][1] (`actual`) not equal to resA1[[5]][1] (`expected`).
  
    `actual`: 0.29
  `expected`: 0.94
  
  [ FAIL 4 | WARN 0 | SKIP 12 | PASS 821 ]
  Error: Test failures
  Execution halted
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘ggm.R’ ‘wfdb-structures.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘clustered.graphs.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘backfile.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘directory.R’ ‘facets.R’ ‘metadata.R’
Namespace in Imports field not imported from: ‘snow’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘mathjaxr’
  All declared Imports should be used.
checkRd: (-1) fit_mean.Rd:54: Lost braces
    54 | \code{t_optims}{optimal parametrizations}
       |                ^
checkRd: (-1) fit_mean.Rd:55: Lost braces
    55 | \code{G_optims}{optimal rotations}
       |                ^
checkRd: (-1) fit_mean.Rd:56: Lost braces
    56 | \code{b_optims}{optimal scalings}
       |                ^
checkRd: (-1) fit_mean.Rd:57: Lost braces
    57 | \code{n_optims}{optimal re-normalization}
       |                ^
checkRd: (-1) fit_mean.Rd:58: Lost braces
    58 | \code{n_iter}{number of iterations until convergence}
       |              ^
checkRd: (-1) docs_delete_by_query.Rd:47: Lost braces; missing escapes or markup?
    47 | as a document at .tasks/task/${taskId}. This is yours to keep or remove
       |                               ^
checkRd: (-1) docs_update_by_query.Rd:48: Lost braces; missing escapes or markup?
    48 | as a document at .tasks/task/${taskId}. This is yours to keep or remove
       |                               ^
checkRd: (-1) AuditErrors.Rd:40: Escaped LaTeX specials: \_
checkRd: (-1) compute.audit.errors.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) compute.stark.t.Rd:35: Escaped LaTeX specials: \_ \_
checkRd: (-1) find.q.Rd:44: Escaped LaTeX specials: \_
checkRd: (-1) find.q.Rd:56: Escaped LaTeX specials: \_
checkRd: (-1) stark.test.Rd:50: Escaped LaTeX specials: \$
checkRd: (-1) stark.test.Rd:101: Escaped LaTeX specials: \$ \$
checkRd: (-1) tri.audit.sim.Rd:47: Escaped LaTeX specials: \_
checkRd: (-1) tri.calc.sample.Rd:34: Escaped LaTeX specials: \_
checkRd: (-1) tri.sample.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:36: Escaped LaTeX specials: \$
checkRd: (-1) tri.sample.Rd:49: Escaped LaTeX specials: \$
checkRd: (-1) weight.function.Rd:16: Escaped LaTeX specials: \_
checkRd: (-1) electData.Rd:16: Lost braces; missing escapes or markup?
    16 | Variables: \code{id}  = {identification number},
       |                         ^
checkRd: (-1) electData.Rd:17: Lost braces; missing escapes or markup?
    17 | \code{state} = {state}, \code{age} = age in years on a shifted scale (current age minus 70),
       |                ^
checkRd: (-1) summary.elect.Rd:25: Lost braces; missing escapes or markup?
    25 |  TRUE for output on start-state totals e_{r.} (for \code{S}>0)
       |                                          ^
Specified C++11: please drop specification unless essential
File ‘ellipsis/libs/ellipsis.so’:
  Found non-API calls to R: ‘PRVALUE’, ‘Rf_findVarInFrame3’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespace in Imports field not imported from: ‘datasets’
  All declared Imports should be used.
checkRd: (-1) elliptic-package.Rd:92: Lost braces
    92 |     J. Kotus and M. Urb\'{a}nski 2003.  \emph{Hausdorff dimension and Hausdorff
       |                          ^
Running ‘testthat.R’ [16s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(ellmer)
  > 
  > test_check("ellmer")
  Starting 2 test processes
  
  
  Error in `private$handle_error()`:
  ! testthat subprocess exited in file `test-content-image.R`
  Caused by error:
  ! R session closed the process connection, killed
  Backtrace:
       ▆
    1. └─testthat::test_check("ellmer")
    2.   └─testthat::test_dir(...)
    3.     └─testthat:::test_files(...)
    4.       └─testthat:::test_files_parallel(...)
    5.         ├─withr::with_dir(...)
    6.         │ └─base::force(code)
    7.         ├─testthat::with_reporter(...)
    8.         │ └─base::tryCatch(...)
    9.         │   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   10.         │     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   11.         │       └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   12.         └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")
   13.           └─queue$poll(Inf)
   14.             └─base::lapply(...)
   15.               └─testthat (local) FUN(X[[i]], ...)
   16.                 └─private$handle_error(msg, i)
   17.                   └─rlang::abort(...)
  Execution halted
Specified C++11: please drop specification unless essential
checkRd: (-1) elo.run.Rd:80: Lost braces
    80 | \code{\link{score}}, \link{elo.run.helpers}{elo.run helpers}, \code{\link{elo.calc}},
       |                                            ^
File ‘elsa/libs/elsa.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) Emas.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Emas.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Emas.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Emas.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Emas.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Emas.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Emas.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Emas.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Emas.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Emas.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘Matrix’
  All declared Imports should be used.
checkRd: (-1) NEWS.Rd:194: Lost braces; missing escapes or markup?
   194 |             \item added {d,r}betabinom
       |                         ^
Licence stub is invalid DCF.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘binary_method_functions.R’ ‘ordinal_method_functions.R’
    ‘utility_functions.R’
checkRd: (-1) macacaModels.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) macacaModels.Rd:10-11: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.character.emphatic.Rd’ ‘as_emphatic.Rd’ ‘as_html.Rd’
    ‘as_latex.Rd’ ‘as_svg.Rd’ ‘as_svg_anim.Rd’ ‘as_svg_group.Rd’
    ‘as_typst.Rd’ ‘hl.Rd’ ‘hl_adjust.Rd’ ‘is_emphatic.Rd’
    ‘knit_print.emphatic.Rd’ ‘print.emphatic.Rd’ ‘show_html.Rd’
    ‘write_xlsx.Rd’
Specified C++11: please drop specification unless essential
checkRd: (-1) em.Rd:25: Lost braces
    25 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.clogit.Rd:65: Lost braces
    65 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.default.Rd:65: Lost braces
    65 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.fitdist.Rd:49: Lost braces
    49 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.glmerMod.Rd:50: Lost braces
    50 |  \code{terms} the code{terms} object used.
       |                       ^
checkRd: (-1) em.panelmodel.Rd:49: Lost braces
    49 |  \code{terms} the code{terms} object used.
       |                       ^
Namespaces in Imports field not imported from:
  ‘GSA’ ‘Seurat’ ‘curl’ ‘doParallel’ ‘foreach’ ‘ggthemes’ ‘pheatmap’
  ‘stringr’
  All declared Imports should be used.
checkRd: (-1) droso.Rd:8: Lost braces; missing escapes or markup?
     8 | The dataset contains 400 true donor sites, 400 false donor sites and 50 false sites as test set. Each sequence is of 40 nucleotides long. The conserved di-nucleotides GT are present at $21^{st}$ and $22^{nd}$ positions respectively.
       |                                                                                                                                                                                              ^
checkRd: (-1) droso.Rd:8: Lost braces; missing escapes or markup?
     8 | The dataset contains 400 true donor sites, 400 false donor sites and 50 false sites as test set. Each sequence is of 40 nucleotides long. The conserved di-nucleotides GT are present at $21^{st}$ and $22^{nd}$ positions respectively.
       |                                                                                                                                                                                                            ^
checkRd: (-1) encode.character.Rd:22: Escaped LaTeX specials: \~
checkRd: (-1) enetLTS-package.Rd:41: Lost braces; missing escapes or markup?
    41 |   \code{family="binomial"} should be a factor with two levels which is coded as \code{0} and {1}.
       |                                                                                              ^
checkRd: (-1) CTN.Rd:22: Lost braces; missing escapes or markup?
    22 | less memory. Genetic data consists of nucleotide data {A,T,C,G} and are usually saved
       |                                                       ^
Namespaces in Imports field not imported from:
  ‘Biostrings’ ‘DECIPHER’ ‘ggplot2’ ‘reshape2’ ‘usethis’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘HeatMap.R’
File ‘enviPat/libs/enviPat.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) metrics.Rd:124: Lost braces
   124 | Avg = 0.5 (sum | P_i - Q_i| + max{ | P_i - Q_i |})
       |                                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘network.Rd’ ‘types.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dividends.R’ ‘financials.R’ ‘ipos.R’ ‘news.R’ ‘prices.R’ ‘splits.R’
Found the following files/directories:
  ‘Net1-fromR.inp’
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                           ^
checkRd: (-1) misClustRate.Rd:18: Lost braces; missing escapes or markup?
    18 | Compute the empirical MCR, assuming that #{cluster} = #{block},
       |                                                        ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘clean_admin_names.R’ ‘consistency_check.R’ ‘get_admin_names.R’
    ‘handle_outliers.R’ ‘missing_plot.R’
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tinytest’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘readr’
  All declared Imports should be used.
checkRd: (-1) risk.display.rd:98: Escaped LaTeX specials: \$
checkRd: (-1) estimate_R.Rd:59-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimate_R.Rd:64-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimate_R.Rd:67-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimate_R.Rd:70-72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimate_R.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimate_R.Rd:76-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimate_R.Rd:79-80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimate_R.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimate_R.Rd:84-86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wallinga_teunis.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wallinga_teunis.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wallinga_teunis.Rd:53-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wallinga_teunis.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wallinga_teunis.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wallinga_teunis.Rd:56-58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wallinga_teunis.Rd:58-59: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
Running ‘EpiILM.network.R’ [7s/11s]
  Comparing ‘EpiILM.network.Rout’ to ‘EpiILM.network.Rout.save’ ...9817c9817
<  [ reached 'max' / getOption("max.print") -- omitted 301 rows ]
---
>  [ reached getOption("max.print") -- omitted 301 rows ]
19695c19695
<  [ reached 'max' / getOption("max.print") -- omitted 301 rows ]
---
>  [ reached getOption("max.print") -- omitted 301 rows ]
  Running ‘EpiILM.spatial.R’
  Comparing ‘EpiILM.spatial.Rout’ to ‘EpiILM.spatial.Rout.save’ ... OK
checkRd: (-1) runSim.Rd:111: Lost braces
   111 | \ifelse{html}{\out{<i>r</i><sub>1</sub> = 1}}{{\eqn{r_1 = 1}}{r_1 = 1}} while the individual with the lowest phenotypic value
       |                                                              ^
checkRd: (-1) runSim.Rd:112: Lost braces
   112 | is given the rank \ifelse{html}{\out{<i>r<sub>n</sub></i> = <i>n</i>}}{{\eqn{r_n = n}}{r_n = n}}), the probability of an individual
       |                                                                                       ^
checkRd: (-1) runSim.Rd:120-122: Lost braces
   120 | }{
       |  ^
Namespace in Imports field not imported from: ‘xts’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘testthat’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespaces in Imports field not imported from:
  ‘cubature’ ‘rootSolve’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
checkRd: (-1) Tm.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:52-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:55-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tm.Rd:58-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:36-39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:40-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:43-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitpot.Rd:47-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:57-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:60-62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:63-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:69-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) thrselect.Rd:75-77: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘render_erd.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘erlang_c_app.R’
Namespace in Imports field not imported from: ‘signal’
  All declared Imports should be used.
checkRd: (-1) ifa.Rd:16: Lost braces; missing escapes or markup?
    16 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then Sigma^{-1} 
       |                                                                         ^
checkRd: (-1) ifa.Rd:17: Lost braces; missing escapes or markup?
    17 | has the corresponding q-factor decomposition Sigma^{-1}=diag(phi)(I-theta theta')diag(phi), where theta is a mxq matrix and phi the vector of 
       |                                                    ^
checkRd: (-1) ifa.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{iSB}{m x q matrix (diag(Psi)+BB')^{-1}B.}
       |                                         ^
checkRd: (-1) isqrtfa.Rd:15: Lost braces; missing escapes or markup?
    15 | If Sigma has the q-factor decomposition Sigma=diag(Psi)+BB', then the function returns a matrix Omega such that Sigma^{-1} = Omega Omega'. Equivalently,
       |                                                                                                                       ^
Specified C++11: please drop specification unless essential
checkRd: (-1) enp.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enp.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evolat.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) evolat.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) psns.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) psns.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘esem_cfa_syntax.R’
checkRd: (-1) festRidge.Rd:80: Lost braces; missing escapes or markup?
    80 | \item{XtXlamIinv}{explicit value of (X'X + diag(penalty))^{-1}.  Useful
       |                                                           ^
checkRd: (-1) USA_state_N.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) USA_state_N.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) confirmed.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) confirmed.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) death.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) death.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) recovered.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) recovered.Rd:11: Lost braces in \itemize; meant \describe ?
File ‘essentials/libs/essentials.so’:
  Found non-API calls to R: ‘IS_S4_OBJECT’, ‘OBJECT’, ‘UNSET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
checkRd: (-1) momento.central.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{orden}{Es un valor numérico que representa el orden del momento central (orden = {1,2,3,4,...})}
       |                                                                                        ^
checkRd: (-1) aic.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) aic.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) ictab.Rd:64: Escaped LaTeX specials: \&
checkRd: (-1) integration.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) integration.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) integration.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) integration.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loess.options.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loess.options.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) maxlogLreg.Rd:138: Lost braces; missing escapes or markup?
   138 | $j^{th}$ for all the observations.
       |    ^
checkRd: (-1) ETC-package.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ETC-package.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data_cls.Rd:24: Lost braces
    24 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability 0.10 for
       |                    ^
checkRd: (-1) data_cls.Rd:24: Lost braces
    24 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability 0.10 for
       |                            ^
checkRd: (-1) data_reg.Rd:21: Lost braces
    21 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability given by
       |                    ^
checkRd: (-1) data_reg.Rd:21: Lost braces
    21 | \item Graphs: Erd\"{o}s-R\'{e}nyi graphs with connection probability given by
       |                            ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘elx_run_query.R’
checkRd: (-1) FuzzyCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "fcm {ppclust}"
       |                                                       ^
checkRd: (-1) pamCluster.Rd:15: Lost braces; missing escapes or markup?
    15 | A list of cluster labels and a R object of class "pam {cluster}"
       |                                                       ^
Namespaces in Imports field not imported from:
  ‘forcats’ ‘rqPen’ ‘utils’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘metadat’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘EnvStats’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘KMsurv’ ‘MLEcens’ ‘lubridate’ ‘msm’ ‘perm’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Specified C++11: please drop specification unless essential
checkRd: (-1) colplot.Rd:52: Lost braces
    52 | \item{legend}{should a legend be added? Defaults to code{FALSE}}
       |                                                         ^
checkRd: (-1) colplot.Rd:56: Lost braces
    56 | \item{legend.pretty}{logical: should the legend values produced by \[base]{pretty}? Othewrwise they are exact. Defaults to \code{TRUE}}
       |                                                                           ^
checkRd: (-1) calculateGLR.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) glr.Rd:5: Lost braces
     5 |   Conducts a generalized likelihood ratio test testing whether {\eqn{\beta \in}  (-\code{c},\code{c})}. Covariates can be accommodated.
       |                                                                ^
checkRd: (-1) glr.Rd:34: Lost braces
    34 |   This is a similar function to the main function \code{evian}. Instead of testing H0: \eqn{\beta}=0, it tests for whether H0:{\eqn{\beta \in} (-\code{c},\code{c})}.
       |                                                                                                                               ^
checkRd: (-1) Snoring.Rd:21: Escaped LaTeX specials: \&
checkRd: (-1) fmgammagpd.Rd:183: Lost braces; missing escapes or markup?
   183 |  \item {nlumgammagpd} and {proflumgammagpd} - \code{c(mgshape, mgscale, mgweight[1:(M-1)], sigmau, xi)}
       |                           ^
checkRd: (-1) fmgammagpdcon.Rd:181: Lost braces; missing escapes or markup?
   181 |  \item {nlumgammagpdcon} and {proflumgammagpdcon} - \code{c(mgshape, mgscale, mgweight[1:(M-1)], xi)}
       |                              ^
checkRd: (-1) kernels.Rd:87: Lost braces
    87 | code{\link[evmix:kernels]{kd*}}  and \code{\link[evmix:kernels]{kp*}} give the
       |     ^
Found the following files/directories:
  ‘sample .nwk’
checkRd: (-1) ShapeDist.Rd:18: Lost braces; missing escapes or markup?
    18 | Procrustes distance provides a measure of coincidence of two point sets {xi} and {yi}, i=1..N. For this purpose the variance of point deviations is calculated at the optimal superposition of the sets. It allows to characterize the shape proximity of a given simplex to shape of a reference one.
       |                                                                         ^
checkRd: (-1) ShapeDist.Rd:18: Lost braces; missing escapes or markup?
    18 | Procrustes distance provides a measure of coincidence of two point sets {xi} and {yi}, i=1..N. For this purpose the variance of point deviations is calculated at the optimal superposition of the sets. It allows to characterize the shape proximity of a given simplex to shape of a reference one.
       |                                                                                  ^
Namespace in Imports field not imported from: ‘parallel’
  All declared Imports should be used.
checkRd: (-1) stop_rule.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) stop_rule.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) stop_rule.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) stop_rule.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Specified C++14: please drop specification unless essential
File ‘excursions/libs/excursions.so’:
  Found ‘printf’, possibly from ‘printf’ (C)
    Object: ‘CAMD.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘CAMD.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘gamlss.dist’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
File ‘exif/libs/exif.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘polynom’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘tidyverse’
  All declared Imports should be used.
checkRd: (-1) ccF.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) ccF.Rd:42: Lost braces
    42 | CALI\'{N}SKI, T.; CORSTEN, L. C. A. Clustering
       |       ^
checkRd: (-1) ccF.Rd:41: Lost braces
    41 | CALI\'{N}SKI, T.; CORSTEN, L. C. A. Clustering
       |       ^
Running examples in ‘expectreg-Ex.R’ failed
The error most likely occurred in:

> ### Name: Mqreg
> ### Title: Semiparametric M-Quantile Regression
> ### Aliases: Mqreg
> ### Keywords: nonparametric smooth multivariate regression nonlinear models
> 
> ### ** Examples
> 
> 
> data("lidar", package = "SemiPar")
Error in find.package(package, lib.loc, verbose = verbose) : 
  there is no package called ‘SemiPar’
Calls: data -> find.package
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compare_benchmark_event.R’ ‘compare_benchmark_time.R’
File ‘expint/libs/expint.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespace in Imports field not imported from: ‘ggpmisc’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_fct_adjs.R’ ‘compute_fct_adjs.Rd’ ‘guess_measure_sets.R’
    ‘mutate_expecvar.R’ ‘mutate_expecvar.Rd’ ‘mutate_metrics.R’
    ‘mutate_metrics.Rd’ ‘summarise_measures.R’ ‘summarise_measures.Rd’
    ‘validators.R’
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) MatIn.Rd:6: Lost braces
     6 | Computation of aggregation matrices for generalized interactions that are used in code{\link{extRC}} to estimate extended RC models.
       |                                                                                       ^
checkRd: (-1) plot.Rd:5: Lost braces
     5 | \description{It plots the output of code{\link{extRC}} function for a vector of lambda values.}
       |                                         ^
checkRd: (-1) print.Rd:5: Lost braces
     5 | \description{Given the output of code{\link{extRC}} function, it is written in a readable form.}
       |                                      ^
checkRd: (-1) summary.Rd:5: Lost braces
     5 | \description{Summary method for the output of code{\link{extRC}} function.}
       |                                                   ^
File ‘extremis/libs/extremis.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Functions and objects (details)
checkRd: (-1) va.Rd:80: Lost braces
    80 | \doi{10.1016/s0002-9394(02)01825-1}{Beck et al.}, and
       |                                    ^
checkRd: (-1) codePasses.Rd:64: Escaped LaTeX specials: \#
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
checkRd: (-1) EEzGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_predict.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EEzGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_fit.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_fit.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_predict.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) EzGP_predict.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LEzGP_fit.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LEzGP_fit.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LLF_gradients.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) LLF_gradients.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ?
Namespace in Imports field not imported from: ‘BiocStyle’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘GLARMA.R’ ‘GLARMA.Rd’ ‘INGARCH.R’ ‘INGARCH.Rd’ ‘fitted.GLARMA.Rd’
    ‘fitted.INGARCH.Rd’ ‘forecast.GLARMA.Rd’ ‘forecast.INGARCH.Rd’
    ‘glance.GLARMA.Rd’ ‘glance.INGARCH.Rd’ ‘residuals.GLARMA.Rd’
    ‘residuals.INGARCH.Rd’ ‘tidy.GLARMA.Rd’ ‘tidy.INGARCH.Rd’
Namespace in Imports field not imported from: ‘tsibbledata’
  All declared Imports should be used.
checkRd: (-1) fmCov.Rd:37: Lost braces; missing escapes or markup?
    37 | where, \code{alpha(i)} is the intercept, \code{f(t)} is a {K x 1} vector of 
       |                                                           ^
checkRd: (-1) plot.ffm.Rd:82: Lost braces; missing escapes or markup?
    82 | \item{las}{one of {0, 1, 2, 3} to set the direction of axis labels, same as
       |                   ^
checkRd: (-1) summary.ffm.Rd:39: Lost braces; missing escapes or markup?
    39 | Returned object is of class {summary.ffm}.
       |                             ^
checkRd: (-1) fviz_nbclust.Rd:75: Lost braces; missing escapes or markup?
    75 | (2001) proposed: "the smallest k such that gap(k) >= gap(k+1) - s_{k+1}". 
       |                                                                   ^
checkRd: (-1) fviz_nbclust.Rd:77: Lost braces; missing escapes or markup?
    77 | SE.factor*s_{k+1}" where SE.factor is a numeric value which can be 1
       |             ^
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    minor changes
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘R6’ ‘caTools’ ‘httr’ ‘jsonlite’ ‘rlang’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
checkRd: (-1) FADPclust.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FADPclust.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) happy.Rd:14: Lost braces
    14 |                  code{Pretty happy} <  \code{Very happy}}
       |                      ^
Namespaces in Imports field not imported from:
  ‘base’ ‘data.table’
  All declared Imports should be used.
checkRd: (-1) fra_sf.Rd:22: Lost braces; missing escapes or markup?
    22 | A map of France as {sf} object. Can be used as dataset or for maps
       |                    ^
File ‘falcon/libs/falcon.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) pi0FAMT.Rd:18: Lost braces
    18 | \code{pi0}{The estimated proportion \code{pi0} of null hypotheses.}}
       |           ^
File ‘fansi/libs/fansi.so’:
  Found non-API call to R: ‘R_nchar’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
File ‘FastBandChol/libs/FastBandChol.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
File ‘fastcmh/libs/fastcmh.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aggregate_gt.R’ ‘aux_funcs.R’ ‘double_did.R’ ‘estimate_gtatt.R’
    ‘generics.R’ ‘sim_did.R’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
File ‘FastGP/libs/FastGP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘MASS’ ‘grDevices’ ‘utils’
  All declared Imports should be used.
checkRd: (-1) eigen_compute_single_entry_of_diagonal_matrix.Rd:17: Lost braces; missing escapes or markup?
    17 | The value of m^{-1}_{j,j}
       |                ^
checkRd: (-1) eigen_compute_single_entry_of_diagonal_matrix.Rd:17: Lost braces; missing escapes or markup?
    17 | The value of m^{-1}_{j,j}
       |                     ^
File ‘fastmatch/libs/fastmatch.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘EXTPTR_PTR’, ‘NAMED’, ‘OBJECT’,
    ‘SETLENGTH’, ‘SET_NAMED’, ‘STRING_PTR’, ‘VECTOR_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
File ‘fastplyr/libs/fastplyr.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘ggplot2’
  All declared Imports should be used.
checkRd: (-1) update_nhl_db.Rd:51-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_nhl_db.Rd:54-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_phf_db.Rd:51-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_phf_db.Rd:54-57: Lost braces in \itemize; meant \describe ?
.run: no visible binding for global variable ‘init’
.run: no visible global function definition for ‘init’
.run: no visible binding for global variable ‘run’
Undefined global functions or variables:
  init run
Note: information on .o files is not available
File ‘FastRWeb/libs/null.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘lifecycle’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘collapse’ ‘data.table’ ‘kit’ ‘magrittr’
  All declared Imports should be used.
checkRd: (-1) Error-Classes.Rd:107-119: Lost braces
   107 |   \item \code{do_verbose(response, template)} {
       |                                               ^
checkRd: (-1) Error.Rd:33-45: Lost braces
    33 |   \item \code{do(response, mssg)} {
       |                                   ^
Namespace in Imports field not imported from: ‘agridat’
  All declared Imports should be used.
checkRd: (-1) FBN.histogramMaxima.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.histogramMaxima.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.histogramMaxima.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.histogramMaxima.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBN.kmeans.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FBNormalization.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fbad_copy_ad.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{status_option}{(string) enum {ACTIVE, PAUSED, INHERITED_FROM_SOURCE}}
       |                                    ^
checkRd: (-1) fbad_copy_ad.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{rename_strategy}{(string) enum {DEEP_RENAME, ONLY_TOP_LEVEL_RENAME, NO_RENAME}}
       |                                      ^
checkRd: (-1) fbad_copy_adset.Rd:34: Lost braces; missing escapes or markup?
    34 | \item{status_option}{(string) enum {ACTIVE, PAUSED, INHERITED_FROM_SOURCE}}
       |                                    ^
checkRd: (-1) fbad_copy_adset.Rd:36: Lost braces; missing escapes or markup?
    36 | \item{rename_strategy}{(string) enum {DEEP_RENAME, ONLY_TOP_LEVEL_RENAME, NO_RENAME}}
       |                                      ^
checkRd: (-1) fbad_copy_campaign.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{status_option}{(string) enum {ACTIVE, PAUSED, INHERITED_FROM_SOURCE}}
       |                                    ^
checkRd: (-1) fbad_copy_campaign.Rd:33: Lost braces; missing escapes or markup?
    33 | \item{rename_strategy}{(string) enum {DEEP_RENAME, ONLY_TOP_LEVEL_RENAME, NO_RENAME}}
       |                                      ^
checkRd: (-1) plot.fbroc.conf.Rd:5: Lost braces
     5 | \title{Plots function for object of class{fbroc.conf}}
       |                                          ^
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Found the following files/directories:
  ‘test2delete.txt’ ‘test2delete2_values.txt’ ‘test2delete_values.txt’
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘.Rprofile’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘caps-plot.R’ ‘utils.R’
checkRd: (-1) simulation_model9.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{ci}{A vector of 2 values containing $c_{1i}$ and $c_{2i}$ in the contamination
       |                                              ^
checkRd: (-1) simulation_model9.Rd:47: Lost braces; missing escapes or markup?
    47 | \item{ci}{A vector of 2 values containing $c_{1i}$ and $c_{2i}$ in the contamination
       |                                                           ^
Namespaces in Imports field not imported from:
  ‘FastGP’ ‘MASS’ ‘fdapace’
  All declared Imports should be used.
checkRd: (-1) NASAtemp.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) NASAtemp.Rd:15: Lost braces in \itemize; meant \describe ?
Namespaces in Imports field not imported from:
  ‘data.table’ ‘ggplot2’ ‘randomcoloR’ ‘sqldf’
  All declared Imports should be used.
File ‘FD/libs/FD.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following files/directories:
  ‘vert.txt’
checkRd: (-1) p.fdr.Rd:30: Lost braces
    30 | \item{adjust.method}{A string used to identify the p-value and false discovery rate adjustment method. Defaults to \code{BH}. Options are \code{BH}, \code{BY}, code{Bon},\code{Holm}, \code{Hoch}, and \code{Sidak}.}
       |                                                                                                                                                                     ^
Specified C++11: please drop specification unless essential
File ‘feather/libs/feather.so’:
  Found ‘_ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Object: ‘libfeather.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘e1071’ ‘lattice’ ‘randomForest’ ‘tibble’ ‘utils’
  All declared Imports should be used.
checkRd: (-1) mutlicol_terminator.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mutlicol_terminator.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mutlicol_terminator.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mutlicol_terminator.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rfeTerminator.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rfeTerminator.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rfeTerminator.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rfeTerminator.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) morse.Rd:40: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:23: Escaped LaTeX specials: \#
checkRd: (-1) noRegMin.Rd:24: Escaped LaTeX specials: \#
checkRd: (-1) regMin.Rd:24: Escaped LaTeX specials: \#
File ‘fechner/libs/fechner.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘panelView’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add.R’ ‘comments.R’ ‘create.R’ ‘delete.R’ ‘finish_upload.R’ ‘map.R’
    ‘map_elements.R’ ‘proc.R’ ‘style.R’ ‘user.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc-squintability.R’ ‘get.R’ ‘pipe-sine-boa.Rd’ ‘plot-projection.R’
    ‘projection.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘change_column_types.Rd’ ‘create_alter_attr.Rd’ ‘create_edgelist.Rd’
    ‘create_nw.Rd’ ‘create_relation_labels.Rd’ ‘create_tidygraph.Rd’
    ‘fix_errors.Rd’ ‘produce_data.R’ ‘translate.Rd’
Unexported object imported by a ':::' call: ‘bit:::R_bit_as_hi’
  See the note in ?`:::` about the use of this operator.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_cplx.Rd’ ‘add_l2nm.Rd’ ‘can_repr.Rd’ ‘cross.R’ ‘fft.R’
    ‘fftab.Rd’ ‘fourier_frequencies.Rd’ ‘frequency.R’ ‘get.R’ ‘get_fx.Rd’
    ‘get_rect.Rd’ ‘has_cplx.Rd’ ‘internal.R’ ‘plot.R’ ‘repr.R’
    ‘to_cplx.Rd’
Specified C++11: please drop specification unless essential
checkRd: (-1) contemParametros.Rd:19: Lost braces
    19 | \item{exclui3pontos}{verify por ... ? in f<-function(a, ...){ }}
       |                                                             ^
Namespaces in Imports field not imported from:
  ‘mgcv’ ‘numDeriv’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘rclipboard’ ‘shinyBS’ ‘shinyWidgets’ ‘shinyjs’
  All declared Imports should be used.
checkRd: (-1) bitspec.Rd:8: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘RcppProgress’
  All declared Imports should be used.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘00.helpers.R’ ‘01.firm_register.R’ ‘02.FOandFM.R’ ‘03.people.R’
    ‘04.FF_either.R’ ‘05.network&graph.R’
Specified C++11: please drop specification unless essential
File ‘fishMod/libs/fishMod.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rmarkdown’ ‘utils’
  All declared Imports should be used.
checkRd: (-1) FiSh-package.Rd:19: Lost braces
    19 | \doi{10.3389/feart.2020.00255}{Frontiers in Earth Science, 8:255}.
       |                               ^
checkRd: (-1) FiSh-package.Rd:32: Lost braces
    32 | \doi{10.3389/feart.2020.00255}{Frontiers in Earth Science, 8:255}.
       |                               ^
checkRd: (-1) SEP_FIM.Rd:46: Lost braces
    46 | \doi{10.3389/feart.2020.00255}{Frontiers in Earth Science, 8:255}.
       |                               ^
Namespaces in Imports field not imported from:
  ‘httr’ ‘jsonlite’
  All declared Imports should be used.
checkRd: (-1) fitConic.Rd:66-73: Lost braces
    66 | \code{parA }{vector of the six "ABCDEF" coefficients
       |             ^
checkRd: (-1) fitConic.Rd:67: Lost braces
    67 | \code{RSS }{'root sum square' figure of merit describing the relative fit quality}
       |            ^
checkRd: (-1) fitConic.Rd:68: Lost braces
    68 | \code{iters }{number of iterations at convergence}
       |              ^
checkRd: (-1) fitConic.Rd:69-71: Lost braces
    69 | \code{exitCode }{1 means ellipse, 2 means hyperbola, 3 means parabola.
       |                 ^
checkRd: (-1) rotateA.Rd:59: Lost braces; missing escapes or markup?
    59 | For \code{xyrot} {a Nx2 array of the x,y coordinates of the rotated data set. }
       |                  ^
checkRd: (-1) fitmixEM.Rd:51: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app_server.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘readData.R’
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘MASS’ ‘XML’ ‘gglasso’ ‘methods’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘rstudioapi’
  All declared Imports should be used.
checkRd: (-1) food_world_cup.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) food_world_cup.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) distribution_vector.Rd:14: Lost braces; missing escapes or markup?
    14 | All standard distributions from {stats} package are covered. For a list
       |                                 ^
checkRd: (-1) convertInitDesignToGrid.Rd:11: Lost braces; missing escapes or markup?
    11 | The initial design, consisting of \code{d + 1} columns ({d} dimensions and
       |                                                         ^
Specified C++11: please drop specification unless essential
checkRd: (-1) ModelMixHMM-class.Rd:31: Lost braces; missing escapes or markup?
    31 |         \code{smoothed} of class {StatMixHMM}).
       |                                  ^
checkRd: (-1) ModelMixHMMR-class.Rd:31: Lost braces; missing escapes or markup?
    31 |         \code{smoothed} of class {StatMixHMMR}).
       |                                  ^
checkRd: (-1) summary.flamcv.rd:8: Lost braces
     8 | This function summarizes a call to code{\link{flamCV}} and identifies the tuning parameter chosen by cross-validation.
       |                                        ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘projection.R’
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) flashClust.Rd:92: Escaped LaTeX specials: \&
File ‘flashClust/libs/flashClust.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) flashlight.Rd:53: Lost braces; missing escapes or markup?
    53 | like those in package {MetricsWeighted}.}
       |                       ^
checkRd: (-1) grouped_stats.Rd:49: Lost braces; missing escapes or markup?
    49 | {MetricsWeighted}.}
       | ^
checkRd: (-1) plot_counts.Rd:45: Lost braces; missing escapes or markup?
    45 | Experimental. Uses package {ggpubr} to rearrange the figure.
       |                            ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_labels.Rd’ ‘divide.Rd’ ‘extract_labels.Rd’ ‘fill_labels.Rd’
    ‘fill_values.Rd’ ‘flatten_table_list.Rd’ ‘ft_ex.Rd’ ‘ft_ex_v2.Rd’
    ‘ft_set.Rd’ ‘get_col_values.Rd’ ‘get_page.Rd’ ‘pf_ex_compact.Rd’
    ‘remove_agg.Rd’ ‘remove_bottom.Rd’ ‘remove_cols.Rd’ ‘remove_empty.Rd’
    ‘remove_k.Rd’ ‘remove_left.Rd’ ‘remove_right.Rd’ ‘remove_rows.Rd’
    ‘remove_top.Rd’ ‘replace_dec.Rd’ ‘set_page.Rd’ ‘unpivot.Rd’
Namespace in Imports field not imported from: ‘RCurl’
  All declared Imports should be used.
checkRd: (-1) flex_dashboard.Rd:96: Lost braces; missing escapes or markup?
    96 | the `{.storyboard}` attribute to individual pages rather than using the
       |      ^
checkRd: (-1) fmp.Rd:45: Lost braces; missing escapes or markup?
    45 | If k = 0: (xi_1, ..., x_{C_i - 1}, omega)
       |                         ^
checkRd: (-1) fmp.Rd:47: Lost braces; missing escapes or markup?
    47 | If k = 1: (xi_1, ..., x_{C_i - 1}, omega, alpha1, tau1)
       |                         ^
checkRd: (-1) fmp.Rd:49: Lost braces; missing escapes or markup?
    49 | If k = 2: (xi_1, ..., x_{C_i - 1}, omega, alpha1, tau1, alpha2, tau2)
       |                         ^
Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/flint.Rcheck/00install.out’ for details.
File ‘flock/libs/flock.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_flowmap.R’ ‘add_flowmap.Rd’ ‘hca_flowdat.R’
checkRd: (-1) flow_embed.Rd:30: Lost braces; missing escapes or markup?
    30 | \item Don't forget to add {flow} to Suggests in your DESCRIPTION file.
       |                           ^
checkRd: (-1) flowdata.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{Flow}{Water flow, in m^{3}/s}
       |                              ^
Malformed Description field: should contain one or more complete sentences.
Found the following files/directories:
  ‘flux.CH4.txt’
Namespaces in Imports field not imported from:
  ‘kableExtra’ ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘kableExtra’ ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) FMP.Rd:30: Lost braces; missing escapes or markup?
    30 | \eqn{m(\theta) = b_0 + b_1 \theta + b_2 \theta^2 + b_3 \theta^3}. Acceptable values of k = {0,1,2,3}. According to 
       |                                                                                            ^
checkRd: (-1) autoFMradio.Rd:46: Lost braces; missing escapes or markup?
    46 | Step 1 (regularized correlation matrix estimation) is performed using the \code{X}, \code{t}, and {fold} arguments.
       |                                                                                                   ^
checkRd: (-1) Estable.Rd:40: Lost braces
    40 |   \code{dEstable}{ gives the density function;}
       |                  ^
checkRd: (-1) Estable.Rd:41: Lost braces
    41 |   \code{pEstable}{ gives the distribution function or its complement;}
       |                  ^
checkRd: (-1) Estable.Rd:42: Lost braces
    42 |   \code{qEstable}{ gives quantiles;}
       |                  ^
checkRd: (-1) Estable.Rd:43-56: Lost braces
    43 |   \code{tailsEstable}{ returns a list with the following components
       |                      ^
checkRd: (-1) FMstable.Rd:50: Lost braces
    50 |   \code{dFMstable}{ gives the density function;}
       |                   ^
checkRd: (-1) FMstable.Rd:51: Lost braces
    51 |   \code{pFMstable}{ gives the distribution function or its complement;}
       |                   ^
checkRd: (-1) FMstable.Rd:52: Lost braces
    52 |   \code{qFMstable}{ gives quantiles;}
       |                   ^
checkRd: (-1) FMstable.Rd:53-66: Lost braces
    53 |   \code{tailsFMstable}{  returns a list with the following components
       |                       ^
checkRd: (-1) navbar_page.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) navbar_page.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) navbar_page.Rd:38: Lost braces in \itemize; meant \describe ?
Malformed Description field: should contain one or more complete sentences.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘grid’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘airport_footprint.R’ ‘airport_footprint.Rd’ ‘latlong_footprint.R’
    ‘latlong_footprint.Rd’
checkRd: (-1) foreca.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:78-80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:81-83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:84-87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:88-90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:91-92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) foreca.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) initialize_weightvector.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:60-61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initialize_weightvector.Rd:64-65: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mod_carga_datos.R’ ‘mod_comparacion.R’ ‘mod_descom.R’
    ‘mod_descom_utils.R’ ‘mod_desvio.R’ ‘mod_model_arima_utils.R’
    ‘mod_normal_utils.R’ ‘mod_nuevos.R’ ‘mod_periodograma.R’
    ‘mod_periodograma_utils_.R’ ‘mod_t_c.R’ ‘mod_t_c_utils.R’
    ‘mod_train_test.R’ ‘ts_utils.R’
Namespace in Imports field not imported from: ‘dtplyr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘decomposedPSF’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘forrel’ ‘pedtools’ ‘plotly’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Previous versions (not tagged nor released)
Namespaces in Imports field not imported from:
  ‘blockCV’ ‘patchwork’
  All declared Imports should be used.
checkRd: (-1) species_bw.Rd:23: Lost braces
    23 | between trees." \doi{10.1371/journal.pone.0229930}{PLOS One 15: e0229930}.
       |                                                   ^
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘reshape2’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘pkgKitten’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘tibble’ ‘viridis’
  All declared Imports should be used.
checkRd: (-1) process_pcl.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{pavd}{logical input to include Plant Area Volume Density Plot from {plot_pavd},
       |                                                                          ^
Namespaces in Imports field not imported from:
  ‘spatstat’ ‘spatstat.data’
  All declared Imports should be used.
checkRd: (-1) depth.Rd:17: Lost braces; missing escapes or markup?
    17 |   \item {file} : {filename}
       |                  ^
checkRd: (-1) depth.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item {z_depth} : {measured focus range depth (z)}}
       |                     ^
Namespaces in Imports field not imported from:
  ‘R6’ ‘httr’ ‘jsonlite’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘knitr’ ‘utils’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘str_extract_part.R’
Namespaces in Imports field not imported from:
  ‘TreeSim’ ‘shinyjs’
  All declared Imports should be used.
checkRd: (-1) FGf.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FGf.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FourgameteP.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FourgameteP.Rd:38: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘LaplacesDemon’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
checkRd: (-1) plot_lines.Rd:66: Lost braces
    66 | moderator. By default it is equal to \8code{c(19, 17, 15, 8, 5, 4, 3, 1)}.}
       |                                            ^
checkRd: (-1) Fpop.Rd:8: Lost braces; missing escapes or markup?
     8 | sum_{i=1}^n (x_i-m_i)^2 + lambda * sum_{i=1}^{n-1} I(m_i !=
       |     ^
checkRd: (-1) Fpop.Rd:8: Lost braces; missing escapes or markup?
     8 | sum_{i=1}^n (x_i-m_i)^2 + lambda * sum_{i=1}^{n-1} I(m_i !=
       |                                        ^
checkRd: (-1) Fpop.Rd:8: Lost braces; missing escapes or markup?
     8 | sum_{i=1}^n (x_i-m_i)^2 + lambda * sum_{i=1}^{n-1} I(m_i !=
       |                                              ^
checkRd: (-1) Fpop.Rd:9: Lost braces; missing escapes or markup?
     9 | m_{i+1}), where the indicator function I counts the number of
       |   ^
Namespace in Imports field not imported from: ‘psych’
  All declared Imports should be used.
File ‘fractional/libs/fractional.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) emfrail_control.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) emfrail_control.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MultiAsset.Rd:26: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
checkRd: (-1) summary.frbs.Rd:32: Lost braces
    32 |                           \code{"GAUSSIAN"}, code{"TRIANGLE"}, \code{"TRAPEZOID"}, \code{"SIGMOID"}, and \code{"BELL"}.
       |                                                  ^
checkRd: (-1) summary.frbs.Rd:60: Lost braces; missing escapes or markup?
    60 |          {4.0, 0.23, 0.43, 0.53, 0.73} on its column. It means that the label a.2 of variable v.1 
       |          ^
Namespace in Imports field not imported from: ‘MASS’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) maximin.Rd:197: Lost braces
   197 | Meinshausen, N and P. B{u}hlmann (2015). Maximin effects in inhomogeneous large-scale data.
       |                        ^
Error(s) in re-building vignettes:
--- re-building ‘FRK_intro.Rnw’ using knitr
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- re-building ‘FRK_non-Gaussian.Rnw’ using knitr
--- finished re-building ‘FRK_non-Gaussian.Rnw’

SUMMARY: processing the following file failed:
  ‘FRK_intro.Rnw’

Error: Vignette re-building failed.
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_data_frame.Rd’ ‘as_list.Rd’ ‘dplyr_methods.Rd’ ‘fr_schema.R’
    ‘fr_tdr.R’ ‘read_fr_tdr.R’ ‘update_field.R’ ‘update_field.Rd’
checkRd: (-1) FSelector-package.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FSelector-package.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FSelector-package.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FSelector-package.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) relief.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) relief.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) report.Rd:18: Lost braces; missing escapes or markup?
    18 |         \item{las}{numeric in {0,1,2,3}; the style of axis labels (see \code{\link{par}}).}
       |                               ^
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘qpdf’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utility_fSACF.R’
checkRd: (-1) Spec_compare_localize_freq.Rd:49: Escaped LaTeX specials: \&
checkRd: (-1) Spec_compare_localize_freq.Rd:52: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘combine_fude.R’ ‘extract_fude.R’ ‘get_boundary.R’ ‘ls_fude.R’
    ‘read_fude.R’ ‘rename_fude.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘find_connected_components.R’
Namespace in Imports field not imported from: ‘foreach’
  All declared Imports should be used.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Ravgr.Rd’ ‘TaylorRussell.Rd’
checkRd: (-1) plot.fd.Rd:69-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.fd.Rd:72-77: Lost braces in \itemize; meant \describe ?
Namespaces in Imports field not imported from:
  ‘bigalgebra’ ‘biganalytics’
  All declared Imports should be used.
Found the following files/directories:
  ‘completeTrial_byArm_eventPriorRateC3=0.001_eventPriorRateT1=0_eventPriorRateT2=0_eventPriorWt=0.5.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.2.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.4.RData’
  ‘completeTrial_byArm_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03_eventPriorWt=0.6.RData’
  ‘completeTrial_pooled_eventPriorRate=0.001_eventPriorWt=0.5.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.2.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.4.RData’
  ‘completeTrial_pooled_eventPriorRate=0.06_eventPriorWt=0.6.RData’
  ‘rcdf_byArm_arm=T1_eventPriorRateC3=0.06_eventPriorRateT1=0.03_eventPriorRateT2=0.03.pdf’
  ‘rcdf_pooled_eventPriorRate=0.06.pdf’
checkRd: (-1) misspellings.Rd:18: Lost braces
    18 | This is a code{tbl_df} mapping misspellings of their words, compiled by
       |               ^
checkRd: (-1) trapezoidalApproximation-methods.Rd:49: Lost braces; missing escapes or markup?
    49 | For example, if Val(A) < EV_{1/3}(A) or Val(A) > EV_{2/3}(A),
       |                             ^
checkRd: (-1) trapezoidalApproximation-methods.Rd:49: Lost braces; missing escapes or markup?
    49 | For example, if Val(A) < EV_{1/3}(A) or Val(A) > EV_{2/3}(A),
       |                                                     ^
checkRd: (-1) genmf.Rd:26: Lost braces; missing escapes or markup?
    26 | \item 'gbellmf' is c(\code{a, b, c}), where \code{a} denotes the width, \code{b} is usually positive and {c} locates the center of the curve.
       |                                                                                                          ^
Specified C++11: please drop specification unless essential
File ‘gafit/libs/gafit.so’:
  Found non-API calls to R: ‘FRAME’, ‘HASHTAB’
File ‘gafit/libs/gafit.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) min_hpd_inc_area_df.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) min_hpd_inc_area_df.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) min_hpd_inc_area_df.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) vza_mean_and_var_rasters.Rd:20: Lost braces
    20 | of the paper on Wilson's warbler, this function computes $tilde{T}^{(mu)}$ (returned as
       |                                                                ^
checkRd: (-1) vza_mean_and_var_rasters.Rd:20: Lost braces; missing escapes or markup?
    20 | of the paper on Wilson's warbler, this function computes $tilde{T}^{(mu)}$ (returned as
       |                                                                    ^
checkRd: (-1) vza_mean_and_var_rasters.Rd:21: Lost braces; missing escapes or markup?
    21 | list component \code{mean.raster}) and $R^{(sigma^2)}$ (returned as list component
       |                                           ^
Namespaces in Imports field not imported from:
  ‘gargle’ ‘getProxy’ ‘rappsflyer’ ‘rfacebookstat’ ‘rgoogleads’
  ‘rmytarget’ ‘rvkstat’ ‘ryandexdirect’ ‘rym’ ‘tidyr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘grDevices’
  All declared Imports should be used.
checkRd: (-1) naref.Rd:13: Lost braces
    13 | \details{ For every \code{factor} or \code{character} column in \code{x}, \code{naref} sets \code{NA} as the reference level for a \code{factor} variable. Columns coded as \code{character} class are first converted to factors via \R{factor(x)}.  If \code{impute=TRUE} then the numeric columns are converted to two columns, one appended \code{.x} that contains imputed values and another appended \code{.miss} which is a binary variable indicating whether the original value was missing.  Numeric columns are returned without change if \code{impute=FALSE} or if they do not contain any missing values.  
       |                                                                                                                                                                                                                                         ^
Namespaces in Imports field not imported from:
  ‘MASS’ ‘gamlss’
  All declared Imports should be used.
checkRd: (-1) pc.Rd:17: Lost braces
    17 | The functions \code{gamlss.pcr()} and \code{gamlss.pc()} are supporting functions. The  are not intended to be called directly by users. The function \code{gamlss.pc()} is using the linear model function \code{lm()} to fit the first principal components while the function code{gamlss.pcr()} uses \code{fitPCR()}.
       |                                                                                                                                                                                                                                                                                      ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Bucket_plot.R’
checkRd: (-1) Gapfill.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:71-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ndvi.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) glag.Rd:7: Lost braces; missing escapes or markup?
     7 | Similar to the \code{\link{lag}} function from the \code{stats} package, but \code{glag} enables padding (e.g. {NA}s or 0s) of the lost entries. Contrary to the \code{\link{lag}} function in the stats package, however, the default in \code{glag} is to pad (with \code{NA}s). The \code{glag} is particularly suited for \code{\link{zoo}} objects, since their indexing is retained
       |                                                                                                                ^
checkRd: (-1) read.ctable.Rd:19: Lost braces; missing escapes or markup?
    19 | a integer scalar which is the index ({icol,irow}) of {row,col}-header
       |                                      ^
checkRd: (-1) read.ctable.Rd:19: Lost braces; missing escapes or markup?
    19 | a integer scalar which is the index ({icol,irow}) of {row,col}-header
       |                                                      ^
checkRd: (-1) read.ctable.Rd:29: Lost braces; missing escapes or markup?
    29 | output array, {row,col}.names are not necessary \code{dimnames[[1]]} and
       |               ^
checkRd: (-1) CompoundDensPlot.Rd:18: Lost braces
    18 |   \item{shape1, scale ,shape2, shape3}{numeric; positive parameters of the GB2 distribution. On the plot they are denotes as \code{a}, code{b}, \code{p}, \code{q} and \code{pl0} respectively.}
       |                                                                                                                                            ^
checkRd: (-1) CompoundVarest.Rd:58: Lost braces
    58 | \code{scoreU.cgb2} returns a \eqn{N \times (L-1)} matrix of scores <code{U}.
       |                                                                         ^
checkRd: (-1) Fisk.Rd:26: Lost braces
    26 | \value{\code{fisk} and \code{fiskh} return vectors of length 4 containing the estimated parameters \eqn{a}, eqn{b}, as well as \eqn{p=1} and \eqn{q=1}. 
       |                                                                                                                ^
checkRd: (-1) MLfullGB2.Rd:23: Lost braces
    23 |   \item{method}{numeric; the method to be used by \code{optim}. By default, code{method = }1 and the used method is BFGS. If \code{method = }2, method L-BFGS-B is used.}
       |                                                                                 ^
checkRd: (-1) MLprofGB2.Rd:16: Lost braces
    16 |   \item{method}{numeric; the method to be used by \code{optim}. By default, code{method = }1 and the used method is BFGS. If \code{method = }2, method L-BFGS-B is used.}
       |                                                                                 ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gbm.factorplot.R’ ‘gbm.mapsf.R’
Specified C++11: please drop specification unless essential
File ‘gbp/libs/gbp.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) fitgbd.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) fitgld.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) gb.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) gbd.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) gld.Rd:36: Escaped LaTeX specials: \&
checkRd: (-1) estprops.Rd:40: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘raster’
  All declared Imports should be used.
checkRd: (-1) listInverseBlocks.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{List all the inverse matrices of the leading sub-matrix of P=Sigma^{-1}
       |                                                                           ^
checkRd: (-1) listInverseBlocks.Rd:17: Lost braces; missing escapes or markup?
    17 | List all the inverse matrices of the leading sub-matrix of P=Sigma^{-1}
       |                                                                    ^
checkRd: (-1) gconsensus.Rd:48-54: Lost braces
    48 | {\code{display.signif.digits} an integer representing the number of significant digits to be obtained in the adaptative approach of the Monte Carlo simulation,
       | ^
File ‘GCPM/libs/GCPM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) GCTF.Rd:56: Lost braces; missing escapes or markup?
    56 |   U : A matrix which has N-rows and J-columns (J < {N, M}).
       |                                                    ^
checkRd: (-1) GCTF.Rd:57: Lost braces; missing escapes or markup?
    57 |   V : A matrix which has M-rows and J-columns (J < {N, M}).
       |                                                    ^
checkRd: (-1) GCTF.Rd:58: Lost braces; missing escapes or markup?
    58 |   J : The number of dimension (J < {N, M}).
       |                                    ^
checkRd: (-1) nearblack.Rd:30: Lost braces
    30 | code{infile=}, indicating that the input file should be
       |     ^
checkRd: (-1) GDSARM.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) GDSARM.Rd:10: Lost braces
    10 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
checkRd: (-1) GDS_givencols.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) GDS_givencols.Rd:10: Lost braces
    10 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
checkRd: (-1) dantzig.delta.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) dantzigS.Rd:7: Lost braces
     7 | Cand{\`e}s, E. and Tao, T. (2007). The Dantzig selector: Statistical estimation when p is much
       |     ^
checkRd: (-1) dataCompoundExt.Rd:6: Lost braces
     6 | \title{Compound Extraction experiment of Dopico-Garc{\' i}a et al. (2007)}
       |                                                     ^
checkRd: (-1) dataCompoundExt.Rd:35: Lost braces
    35 | An analytical experiment conducted by Dopico-Garc{\' i}a et al. (2007) to
       |                                                  ^
checkRd: (-1) dataCompoundExt.Rd:22: Lost braces
    22 | Dopico-Garc{\' i}a, M.S., Valentao, P., Guerra, L., Andrade, P. B., and Seabra, R. M. (2007).
       |            ^
File ‘GEEaSPU/libs/GEEaSPU.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) dental.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dental.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seizure.Rd:21: Lost braces in \itemize; meant \describe ?
Namespace in Imports field not imported from: ‘rootSolve’
  All declared Imports should be used.
checkRd: (-1) geexex.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) geexex.Rd:18: Lost braces in \itemize; meant \describe ?
File ‘gek/libs/gek.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) gelnet.logreg.obj.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{y}{n-by-1 binary response vector sampled from {0,1}}
       |                                                     ^
File ‘gelnet/libs/gelnet.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
checkRd: (-1) parkinson.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) parkinson.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) parkinson.Rd:11: Lost braces in \itemize; meant \describe ?
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘pracma’ ‘rlang’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘purrr’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘qpdf’
  All declared Imports should be used.
checkRd: (-1) GeneF-internal.Rd:40: Lost braces; missing escapes or markup?
    40 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
checkRd: (-1) flexorhtest.Rd:57: Lost braces; missing escapes or markup?
    57 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
checkRd: (-1) flexorhtest.pvalue.Rd:57: Lost braces; missing escapes or markup?
    57 | \author{Yinglei Lai {ylai@gwu.edu}}
       |                     ^
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) cpm.Rd:70: Lost braces; missing escapes or markup?
    70 | covariates included in \code{formula_l} or {formula_s} (required).}
       |                                            ^
Namespaces in Imports field not imported from:
  ‘GGEBiplots’ ‘calibrate’ ‘graphics’ ‘matrixStats’ ‘prettydoc’
  ‘reshape2’
  All declared Imports should be used.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘crossover.R’ ‘initialize_population.R’ ‘mutation.R’
checkRd: (-1) LD.Rd:37-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:47-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:66-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:78-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:82-83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:84-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) LD.Rd:86-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:48-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:59-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:78-87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:93-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:95-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:97-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diseq.Rd:124: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:125: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:126-128: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) diseq.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
Specified C++11: please drop specification unless essential
checkRd: (-1) barto.Rd:15-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) barto.Rd:19-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) barto.Rd:23-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chrY_subseg.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chrY_subseg.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mauve_bbone.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mauve_bbone.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) three_genes.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) three_genes.Rd:19-20: Lost braces in \itemize; meant \describe ?
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.precision.Rd’ ‘ridge.R’
File ‘GenSA/libs/GenSA.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) cfunc.new.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:58-59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:60-61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:63-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cfunc.new.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gensvm.grid.Rd:125: Lost braces
   125 | "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                                ^
checkRd: (-1) gensvm.grid.Rd:125: Lost braces
   125 | "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                                    ^
checkRd: (-1) gensvm.grid.Rd:127: Lost braces
   127 | GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                    ^
checkRd: (-1) gensvm.grid.Rd:127: Lost braces
   127 | GenSVM" in the code{ink{gensvm-package}} page for more info.}
       |                        ^
checkRd: (-1) gensvm.grid.Rd:129: Lost braces
   129 | section "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more 
       |                                        ^
checkRd: (-1) gensvm.grid.Rd:129: Lost braces
   129 | section "Kernels in GenSVM" in the code{ink{gensvm-package}} page for more 
       |                                            ^
Namespace in Imports field not imported from: ‘tibble’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_geometry.Rd’ ‘add_level.Rd’ ‘common.R’
    ‘complete_point_geometry.Rd’ ‘complete_relation_by_geography.Rd’
    ‘coordinates_to_geometry.Rd’ ‘explotation.R’ ‘geodimension.R’
    ‘geolevel.R’ ‘get_empty_geometry_instances.Rd’
    ‘get_higher_level_names.Rd’ ‘get_level_data.Rd’
    ‘get_level_data_geo.Rd’ ‘get_level_geometries.Rd’
    ‘get_level_layer.Rd’ ‘get_level_names.Rd’
    ‘get_unrelated_instances.Rd’ ‘relate_levels.Rd’ ‘relations.R’
    ‘select_levels.Rd’ ‘set_level_data.Rd’ ‘transform_crs.Rd’
Namespace in Imports field not imported from: ‘luz’
  All declared Imports should be used.
checkRd: (-1) calvaria.Rd:8: Lost braces; missing escapes or markup?
     8 | A named list containing \code{x} {a vector containing the ages}
       |                                  ^
checkRd: (-1) calvaria.Rd:9: Lost braces; missing escapes or markup?
     9 |   \code{y} {a matrix where each column is a preshape.} The 23rd, 101st,
       |            ^
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acs_5yr_geo.R’ ‘acs_5yr_rolap.R’ ‘acs_5yr_topic.R’
    ‘anrc_2021_x01.Rd’ ‘as_GeoPackage.Rd’ ‘as_acs_5yr_geo.Rd’
    ‘as_acs_5yr_topic.Rd’ ‘as_flat_table.Rd’ ‘as_geomultistar.Rd’
    ‘as_star_database.Rd’ ‘download_selected_files.Rd’
    ‘get_area_file_names.Rd’ ‘get_area_groups.Rd’ ‘get_area_years.Rd’
    ‘get_areas.Rd’ ‘get_available_area_topics.Rd’
    ‘get_available_area_years.Rd’ ‘get_available_areas.Rd’
    ‘get_code_from_area_name.Rd’ ‘get_geo_attribute_names.Rd’
    ‘get_geo_layer.Rd’ ‘get_metadata.Rd’ ‘get_name_from_area_code.Rd’
    ‘get_names_of_other_topics.Rd’ ‘get_report_names.Rd’
    ‘get_selected_file_names.Rd’ ‘get_subreport_names.Rd’
    ‘get_too_heavy_file_names.Rd’ ‘get_topic_name.Rd’
    ‘select_area_files.Rd’ ‘select_report.Rd’ ‘select_subreport.Rd’
    ‘select_topic.Rd’ ‘set_metadata.Rd’ ‘unzip_files.Rd’
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dra_vtd.R’ ‘heda.R’ ‘lewis.R’ ‘regionalize.R’
File ‘geometries/libs/geometries.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_dimension.Rd’ ‘add_facts.Rd’ ‘define_geoattribute.Rd’
    ‘dimensional_query_run_geoquery.R’ ‘filter_dimension.Rd’
    ‘geomultistar_define_geoattribute.R’ ‘get_empty_geoinstances.Rd’
    ‘multistar_as_flat_table.Rd’ ‘relate_dimension.Rd’ ‘run_geoquery.Rd’
    ‘run_query.Rd’ ‘save_as_geopackage.Rd’ ‘select_dimension.Rd’
    ‘select_fact.Rd’
Namespace in Imports field not imported from: ‘velociraptr’
  All declared Imports should be used.
Error(s) in re-building vignettes:
--- re-building ‘georob_vignette.Rnw’ using Sweave
Loading required package: sp

Attaching package: ‘georob’

The following object is masked from ‘package:stats’:

    step

OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
recomputing robust Mahalanobis distances
saving the robust distances 'MD' as part of ‘r.lmrob’
Namespace in Imports field not imported from: ‘dbplyr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘impacts.R’ ‘posterior_predict.R’
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’ ‘spData’
  All declared Imports should be used.
Running examples in ‘geostatsp-Ex.R’ failed
The error most likely occurred in:

> ### Name: RFsimulate
> ### Title: Simulation of Random Fields
> ### Aliases: RFsimulate modelRandomFields RFsimulate RFsimulate-methods
> ###   RFsimulate,ANY,SpatRaster-method RFsimulate,numeric,SpatRaster-method
> ###   RFsimulate,numeric,SpatVector-method
> ###   RFsimulate,RMmodel,SpatVector-method
> ###   RFsimulate,RMmodel,SpatRaster-method
> ###   RFsimulate,matrix,SpatRaster-method
> ###   RFsimulate,matrix,SpatVector-method RFsimulate,data.frame,ANY-method
> ### Keywords: spatial
> 
> ### ** Examples
> 
> library('geostatsp')
> 
> # exclude this line to use the RandomFields package
> options(useRandomFields = FALSE)
> 
> model1 <- c(var=5, range=1,shape=0.5)
> 
> 
> myraster = rast(nrows=20,ncols=30,extent = ext(0,6,0,4), 
+ 	crs="+proj=utm +zone=17 +datum=NAD27 +units=m +no_defs")
> 
> set.seed(0) 
> 
> simu <- RFsimulate(model1, x=myraster, n=3)
install the RandomFields package for faster simulations
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Malformed Description field: should contain one or more complete sentences.
Found the following calls to data() loading into the global environment:
File ‘geotools/R/zzz.R’:
  data(fr_geo_rad)
See section ‘Good practice’ in ‘?data’.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gemTemporaryEquilibriumPath.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘query_gesla.R’ ‘query_gesla.Rd’ ‘write_gesla.Rd’
Specified C++11: please drop specification unless essential
checkRd: (-1) gesso.cv.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gesso.cv.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gesso.cv.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gesso.cv.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gesso.cv.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gld_read_lattes_zip.R’
Namespaces in Imports field not imported from:
  ‘pipeR’ ‘rlang’
  All declared Imports should be used.
checkRd: (-1) QANOVA.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) QANOVA.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) QANOVA.Rd:64-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) QANOVA.Rd:67: Lost braces in \itemize; meant \describe ?
Namespaces in Imports field not imported from:
  ‘googlesheets4’ ‘tidyr’
  All declared Imports should be used.
checkRd: (-1) gfonts.Rd:8: Lost braces; missing escapes or markup?
     8 | Download Google fonts and generate CSS to use in {rmarkdown} documents and
       |                                                  ^
checkRd: (-1) gfonts.Rd:9: Lost braces; missing escapes or markup?
     9 | {shiny} applications. Some popular fonts are included and ready to use.
       | ^
checkRd: (-1) use_pkg_gfont.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Use a Google Font included in {gfonts}}
       |                                      ^
Namespace in Imports field not imported from: ‘plotly’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘crime.Rd’ ‘get_SVD.Rd’ ‘ggscreeplot.Rd’ ‘reflect.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘girder_experiment.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘labs2.R’
Namespaces in Imports field not imported from:
  ‘R6’ ‘scales’ ‘utils’
  All declared Imports should be used.
Found the following assignments to the global environment:
File ‘ggExtra/R/ggMarginalGadget.R’:
  assign(plotname, eval(parse(text = origPlot)), envir = .GlobalEnv)
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geometrical_data_analysis.R’ ‘ggmca.Rd’ ‘ggmca_with_base_ref.Rd’
    ‘ggpca_3d.Rd’ ‘ggpca_cor_circle.Rd’ ‘pca_interpret.Rd’ ‘utils.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lib.R’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘utilities.R’
checkRd: (-1) render_context.Rd:42: Lost braces; missing escapes or markup?
    42 | \item{xmin, ymin, xmax, ymax}{Boundaries of the area in pixels. {0,0} is the
       |                                                                 ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aaa.R’ ‘flip.R’ ‘geom_link.Rd’ ‘geom_seq.Rd’ ‘geom_seq_break.Rd’
    ‘shift.Rd’ ‘track_info.Rd’
Namespaces in Imports field not imported from:
  ‘grDevices’ ‘gtable’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_phylopic.R’
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘vdiffr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘inset_shape_circle.R’ ‘inset_shape_rectangle.R’ ‘inset_shape_sf.R’
Specified C++11: please drop specification unless essential
possible bashism in configure.ac line 36 (should be 'b = a'):
  if test x"${RSysinfoName}" == x"Darwin"; then
  possible bashism in configure.ac line 47 (should be 'b = a'):
  if test x"${hasOpenMP}" == x""; then
Namespaces in Imports field not imported from:
  ‘Rdpack’ ‘mathjaxr’
  All declared Imports should be used.
checkRd: (-1) boot_eip.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) constrained.Rd:93: Escaped LaTeX specials: \&
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘Rdpack’
  All declared Imports should be used.
checkRd: (-1) constrained.Rd:37: Escaped LaTeX specials: \&
':::' call which should be '::': ‘scales:::censor’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘productplots:::bound’
  See the note in ?`:::` about the use of this operator.
Running ‘bsch.R’
  Comparing ‘bsch.Rout’ to ‘bsch.Rout.save’ ...3a4
> 
  Running ‘penInf.R’
  Comparing ‘penInf.Rout’ to ‘penInf.Rout.save’ ...5a6
> 
  Running ‘sh9.2012.R’
  Comparing ‘sh9.2012.Rout’ to ‘sh9.2012.Rout.save’ ...3a4
> 
  Running ‘shPUR.R’
  Comparing ‘shPUR.Rout’ to ‘shPUR.Rout.save’ ...3a4
> 
  Running ‘test1Fast.R’
  Comparing ‘test1Fast.Rout’ to ‘test1Fast.Rout.save’ ...3a4
> 
  Running ‘test1QE.R’
  Comparing ‘test1QE.Rout’ to ‘test1QE.Rout.save’ ...3a4
> 
  Running ‘test2Fast.R’
  Comparing ‘test2Fast.Rout’ to ‘test2Fast.Rout.save’ ...3a4
> 
  Running ‘test2QE.R’
  Comparing ‘test2QE.Rout’ to ‘test2QE.Rout.save’ ...3a4
> 
  Running ‘test3Fast.R’
  Comparing ‘test3Fast.Rout’ to ‘test3Fast.Rout.save’ ...3a4
> 
  Running ‘test3QE.R’
  Comparing ‘test3QE.Rout’ to ‘test3QE.Rout.save’ ...3a4
> 
  Running ‘test5Fast.R’
  Comparing ‘test5Fast.Rout’ to ‘test5Fast.Rout.save’ ...3a4
> 
  Running ‘test7Fast.R’
  Comparing ‘test7Fast.Rout’ to ‘test7Fast.Rout.save’ ...3a4
> 
  Running ‘testMyFam.R’
  Comparing ‘testMyFam.Rout’ to ‘testMyFam.Rout.save’ ...3a4
>
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ggmugs.R’
Namespaces in Imports field not imported from:
  ‘sna’ ‘utils’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘survival’
  All declared Imports should be used.
Running ‘testthat.R’ [4s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ggpath)
  > 
  > test_check("ggpath")
  free(): double free detected in tcache 2
checkRd: (-1) pcp_scale.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pcp_scale.Rd:54-55: Lost braces in \itemize; meant \describe ?
Namespaces in Imports field not imported from:
  ‘gcookbook’ ‘ggthemes’ ‘moonBook’ ‘tidyverse’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘grDevices’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘Formula’ ‘GGally’ ‘Hmisc’ ‘RPostgres’ ‘colourpicker’ ‘ggpmisc’
  ‘ggpubr’ ‘glue’ ‘gridExtra’ ‘markdown’ ‘patchwork’ ‘plotly’
  ‘quantreg’ ‘shinyFiles’ ‘shinyjqui’ ‘shinyjs’ ‘table1’ ‘zoo’
  All declared Imports should be used.
Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/ggRandomForests.Rcheck/00install.out’ for details.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘reveal_aes.Rd’ ‘reveal_axis.Rd’ ‘reveal_groups.Rd’
    ‘reveal_layers.Rd’ ‘reveal_panels.Rd’ ‘reveal_save.Rd’
Namespaces in Imports field not imported from:
  ‘nomogramFormula’ ‘survival’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘magrittr’ ‘utils’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    * Changes all data options to .data to decrease possibility of column naming overlap
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘scales-sides-.R’ ‘side-layout-.r’ ‘utils-calls.R’
Namespace in Imports field not imported from: ‘tidyr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cnet.r’ ‘graph.r’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Win CRAN check results - R Windows
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_donut.Rd’ ‘geom_donut_slice.Rd’ ‘geom_pie.Rd’
    ‘geom_series_circles.Rd’ ‘geom_series_text.Rd’ ‘geom_slice.Rd’
    ‘stat-series-circles.R’
checkRd: (-1) MODFIT.Rd:33: Lost braces; missing escapes or markup?
    33 |   {chisq_i = sum( (O_iz - E_iz)^2 / E_iz; z = 0, ..., C ), }
       |   ^
checkRd: (-1) probs.GGUM.Rd:27: Lost braces; missing escapes or markup?
    27 |   GUM-based probabilities just constrain alpha to a unit vector of length {I}
       |                                                                           ^
Namespace in Imports field not imported from: ‘ggplot2’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘class’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘annual.R’ ‘anomaly.R’ ‘coverage.R’ ‘daily.R’ ‘flags.R’
    ‘get-country-shapefile.R’ ‘monthly.R’ ‘quarterly.R’ ‘s3_classes.R’
    ‘stations.R’ ‘utils.R’
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
checkRd: (-1) gigg.Rd:70-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gigg.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) significantTau.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) significantTau.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘rtgin1.R’
Specified C++11: please drop specification unless essential
File ‘GiRaF/libs/GiRaF.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘mockery’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘mockery’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) gjamCensorY.Rd:27: Lost braces; missing escapes or markup?
    27 |   \item{\code{y}}{n by S matrix updated with censored {values} substituted for
       |                                                       ^
checkRd: (-1) gjamFillMissingTimes.Rd:32: Lost braces
    32 | Missing times in the data occur where there are gaps in \code{timeCol} column of \code{xdata} and the initial time \code{0} for each sequence.  New versions of the data have \code{NA} (\code{xdata}) or prior values with appropriate weight (\code{ydata}).  Missing times are filled in \code{xdata, ydata, edata}, including a time \code{0} which serves as a prior mean for \code{ydata} for time code{1}.  The group and time indices in columns \code{groupCol} and \code{timeCol} of \code{xdata} reference the time for a given time series.  Missing values in the columns \code{groupVars} of \code{xdata} are filled automatically filled in.  This assumes that values for these variables are fixed for the group.  If \code{FILLMEANS}, the missing  values in \code{ydata} are filled with means for the group and given a low weight specified in \code{missingEffort}.
       |                                                                                                                                                                                                                                                                                                                                                                                                              ^
Namespaces in Imports field not imported from:
  ‘MASS’ ‘MCMCpack’ ‘ggplot2’ ‘moments’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘RcppEigen’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
File ‘gllm/libs/gllm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
File ‘GLMaSPU/libs/GLMaSPU.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) NEWS.Rd:16: Lost braces; missing escapes or markup?
    16 |         \item Now \code{AICc == Inf} when {n <= p + 1}.
       |                                           ^
checkRd: (-1) glmc.Rd:232: Escaped LaTeX specials: \&
checkRd: (-1) glmc.Rd:241: Escaped LaTeX specials: \&
checkRd: (-1) glmc.control.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) glmc.control.Rd:31: Escaped LaTeX specials: \$
checkRd: (-1) glmc.summaries.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) summarylr.Rd:34: Lost braces
    34 | \item{method}{NULL or character vector of length 0, 1 or 2; may be code{"LRT"} or \code{"Rao"} or \code{c("LRT", "Rao")} to compute specified P-values.
       |                                                                        ^
checkRd: (-1) glmmSimData.Rd:4: Lost braces; missing escapes or markup?
     4 | \description{Section 4.1.2 of the refence below descries a simulation study with data generated from a probit mixed model with six fixed effects parameters and a bivariate random effects vector having a 2 by 2 symmetric positive definite covariance matrix. The function simulates a data set from this model with 2500 groups and the number of observation in each group being a random draw from {20,21,...,30}.}
       |                                                                                                                                                                                                                                                                                                                                                                                                          ^
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
File ‘glmnet/libs/glmnet.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespaces in Imports field not imported from:
  ‘DiceKriging’ ‘rgenoud’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘AER’ ‘MASS’ ‘Matrix’ ‘censReg’ ‘effects’ ‘foreign’ ‘lme4’ ‘lmtest’
  ‘nnet’ ‘pBrackets’ ‘plm’ ‘pscl’ ‘sandwich’
  All declared Imports should be used.
checkRd: (-1) ccancer.Rd:16: Lost braces
    16 |                          a factor with levels either \\code{F} (female) or code{M} (male)}
       |                                                            ^
checkRd: (-1) ccancer.Rd:16: Lost braces
    16 |                          a factor with levels either \\code{F} (female) or code{M} (male)}
       |                                                                                ^
checkRd: (-1) galapagos.Rd:4: Lost braces
     4 | \title{{Gal\'{a}pagos} Island species data}
       |              ^
checkRd: (-1) galapagos.Rd:6: Lost braces
     6 |   The number of species on the {Gal\'{a}pagos} Islands
       |                                ^
checkRd: (-1) galapagos.Rd:6: Lost braces
     6 |   The number of species on the {Gal\'{a}pagos} Islands
       |                                      ^
checkRd: (-1) galapagos.Rd:40: Lost braces
    40 |    {Gal\'{a}pagos} (the endemics). 
       |    ^
checkRd: (-1) galapagos.Rd:40: Lost braces
    40 |    {Gal\'{a}pagos} (the endemics). 
       |          ^
checkRd: (-1) galapagos.Rd:44: Lost braces
    44 |   Species number and endemism: The {Gal\'{a}pagos} Archipelago revisited.
       |                                          ^
checkRd: (-1) coef.glmulti.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:27: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:51: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:60: Escaped LaTeX specials: \&
checkRd: (-1) coef.glmulti.Rd:61: Escaped LaTeX specials: \&
checkRd: (-1) consensus.Rd:29: Escaped LaTeX specials: \&
checkRd: (-1) getfit.Rd:14: Lost braces
    14 |   \item{object}{A fitted model object, of class \code{glm}, \code{lm} or code{glm.nb}}
       |                                                                              ^
checkRd: (-1) getfit.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-class.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) glmulti-methods.Rd:14: Lost braces
    14 | code{glmulti} finds what are the \code{n} best models (the confidence set of models) among all possible models (the candidate set, as specified by the user).
       |     ^
checkRd: (-1) glmulti.Rd:99: Escaped LaTeX specials: \&
checkRd: (-1) summary.glmulti.Rd:72: Escaped LaTeX specials: \&
Malformed Description field: should contain one or more complete sentences.
File ‘globalOptTests/libs/globalOptTests.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘rlang’
  All declared Imports should be used.
possible bashism in configure.ac line 44 (test -a/-o):
  if test [ -n "$PKG_CPPFLAGS" -a -n "$PKG_LIBS" ] ; then
  possible bashism in configure.ac line 47 (test -a/-o):
      if test [ -n "$PKG_CPPFLAGS" -o -n "$PKG_LIBS" ] ; then
  possible bashism in configure.ac line 87 (test -a/-o):
      if test [ -n "$GLPK_INCLUDE" -a -n "$GLPK_LIB" ] ; then
  possible bashism in configure.ac line 113 (test -a/-o):
              if test [ -d "/usr/include" -o -d "/usr/local/include" ] ; then
  possible bashism in configure.ac line 119 (test -a/-o):
              if test [ -d "/usr/local/lib" -o -d "/usr/local/lib64" -o -d "/usr/lib" -o -d "/usr/lib64"] ; then
  possible bashism in configure.ac line 148 (test -a/-o):
              if test [ -d "$prefix/lib" -o -d "$prefix/lib64" ] ; then
  possible bashism in configure.ac line 160 (test -a/-o):
  dnl #            if test [ -d "$prefix/include" -a -d "$prefix/lib" ] ; then
checkRd: (-1) getRiiGLPK.Rd:35: Lost braces; missing escapes or markup?
    35 |   Returns the current scale factor $r_{ii}$ for row \code{i} of the specified
       |                                       ^
checkRd: (-1) getSjjGLPK.Rd:35: Lost braces; missing escapes or markup?
    35 |   Returns the current scale factor $s_{jj}$ for column \code{j} of the
       |                                       ^
checkRd: (-1) setRiiGLPK.Rd:28: Lost braces; missing escapes or markup?
    28 |     Scale factor $r_{ii}$.
       |                     ^
checkRd: (-1) setSjjGLPK.Rd:28: Lost braces; missing escapes or markup?
    28 |     Scale factor $s_{jj}$.
       |                     ^
checkRd: (-1) rtheta.Rd:50-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Maf.data.frame.Rd:65: Lost braces
    65 | the lag distance to take. \%For other options see code{getEmpVariogramSlice}.}
       |                                                       ^
checkRd: (-1) NGSAustralia.Rd:114: Lost braces; missing escapes or markup?
   114 | \item{MRB}{obtained from simplifying the major crustal boundaries of {Korsch2015a, Korsch2015b}}
       |                                                                      ^
Specified C++11: please drop specification unless essential
checkRd: (-1) ATEgel.Rd:24: Lost braces
    24 | \item{g}{A formula as \code{y~z}, where code{y} is the response and
       |                                             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ndset.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘1-pitch-normalize-value.R’
Namespaces in Imports field not imported from:
  ‘base’ ‘methods’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘rhandsontable’ ‘shiny’ ‘stats’
  All declared Imports should be used.
checkRd: (-1) BVDWSTOXX.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:16: Escaped LaTeX specials: \& \&
checkRd: (-1) BVDWSTOXX.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:34: Escaped LaTeX specials: \&
checkRd: (-1) BVDWSTOXX.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) gl_nlp.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gl_nlp.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gl_nlp.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gl_nlp.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gl_nlp.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gl_nlp.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gl_nlp.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘assertthat’ ‘future’ ‘httr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gt_make_grid.Rd’
checkRd: (-1) google_find_place.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) google_find_place.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) google_find_place.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) google_map.Rd:54: Lost braces; missing escapes or markup?
    54 | of `{sf}` objects).}
       |     ^
checkRd: (-1) compute_lower_bound_1tree.Rd:31: Lost braces; missing escapes or markup?
    31 | instance from vertex 1.  Internally, it creates the graph Kn-{v1}
       |                                                              ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘collections.R’ ‘packages.R’ ‘published.R’ ‘related.R’ ‘utils.R’
Malformed Description field: should contain one or more complete sentences.
Unknown package ‘DiceOptim’ in Rd xrefs
Namespaces in Imports field not imported from:
  ‘BiocManager’ ‘snpStats’
  All declared Imports should be used.
checkRd: (-1) solve_game.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) solve_game.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) solve_game.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) solve_game.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) solve_game.Rd:90: Lost braces in \itemize; \value handles \item{}{} directly
Unknown package ‘DiceOptim’ in Rd xrefs
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘balanced.Rd’ ‘geks.Rd’ ‘grouped.Rd’ ‘splice.R’
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
File ‘gplm/libs/gplm.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) Auxil.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Auxil.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Auxil.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Auxil.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Fit.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Predict.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Predict.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Predict.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘service-cohere.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘predict.R’ ‘utils.R’
Malformed Title field: should not end in a period.
checkRd: (-1) grade-package.Rd:51-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:55-57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:58-71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:72-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) grade-package.Rd:79-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Granger.inference.difference.Rd:65: Lost braces; missing escapes or markup?
    65 |         least one root larger than one) on bootstrapped \verb{x} and {y}.
       |                                                                      ^
checkRd: (-1) Granger.inference.difference.Rd:68: Lost braces; missing escapes or markup?
    68 |         least one root larger than one) on bootstrapped \verb{x} and {z}.
       |                                                                      ^
checkRd: (-1) Granger.inference.difference.Rd:71: Lost braces; missing escapes or markup?
    71 |         least one root larger than one) on bootstrapped \verb{x}, \verb{y} and {z}.
       |                                                                                ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘amino_acid_pairs.R’
Namespaces in Imports field not imported from:
  ‘Hmisc’ ‘PairedData’ ‘RColorBrewer’ ‘agricolae’ ‘corrplot’ ‘desplot’
  ‘dplyr’ ‘ggplot2’ ‘ggpubr’ ‘gridGraphics’ ‘gtools’ ‘kableExtra’
  ‘knitr’ ‘magrittr’ ‘pastecs’ ‘reshape2’ ‘rmarkdown’ ‘shinyWidgets’
  ‘summarytools’
  All declared Imports should be used.
checkRd: (-1) corrApp.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) crdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) descApp.Rd:55: Escaped LaTeX specials: \&
checkRd: (-1) layoutApp.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) rbdApp.Rd:46: Escaped LaTeX specials: \&
checkRd: (-1) ttApp.Rd:43: Escaped LaTeX specials: \&
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘reshape2’
  All declared Imports should be used.
Undeclared package ‘glasso’ in Rd xrefs
Unknown package ‘edmcr’ in Rd xrefs
Specified C++11: please drop specification unless essential
File ‘graphpcor/libs/graphpcor.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Unknown package ‘rtweet’ in Rd xrefs
Specified C++11: please drop specification unless essential
checkRd: (-1) MinimiseEPL.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MinimiseEPL.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MinimiseEPL.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MinimiseEPL.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) GREMLINS.Rd:23: Lost braces in \itemize; meant \describe ?
accrualReport: multiple local function definitions for ‘gg’ with
  different formal arguments
checkRd: (-1) setgreportOption.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:24: Lost braces
    24 | \item{code{figpos}:}{LaTeX figure environment position; default is \code{"htb!"}}
       |           ^
checkRd: (-1) setgreportOption.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setgreportOption.Rd:29: Lost braces in \itemize; meant \describe ?
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘otgrid.R’ ‘otgridtransport.R’ ‘pivot_measure.R’ ‘transport1d.R’
    ‘transport_cost.R’ ‘transport_costmat.R’ ‘transport_df.R’
    ‘without_zeros.R’
Namespace in Imports field not imported from: ‘BiasedUrn’
  All declared Imports should be used.
checkRd: (-1) NEWS.Rd:669: Lost braces; missing escapes or markup?
   669 |     parameters are rounded so they belong to one of {0, 0.5, 1}. (Simon)
       |                                                     ^
checkRd: (-1) gradients.Rd:96-99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gradients.Rd:100-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gradients.Rd:104-107: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘usethis’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘msm’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘gridExtra’ ‘methods’ ‘tidyr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘MASS’ ‘rjags’
  All declared Imports should be used.
File ‘grove/libs/grove.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) predict.Rd:30: Lost braces
    30 | resp. code{'exponential'} or \code{'no_lag'} for \code{fit_easylinear}.}
       |           ^
Problems with news in ‘NEWS.md’:
No news entries found.
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
Found the following files/directories:
  ‘p1_20up-vs-p2_25up_in_str1.txt’ ‘p1_20up-vs-p2_25up_in_str2.txt’
  ‘p2_25up-vs-p1_20up_in_str1.txt’ ‘p2_25up-vs-p1_20up_in_str2.txt’
  ‘s0_20up.txt’ ‘s0_30up.txt’ ‘s0_f2up.txt’ ‘strs.vec_01mx.txt’
  ‘strs.vec_02mx.txt’ ‘strs.vec_03mx.txt’ ‘strs.vec_04mx.txt’
  ‘strs.vec_05mx.txt’ ‘strs.vec_06mx.txt’ ‘strs.vec_30up.txt’
  ‘strs.vec_50up.txt’ ‘strs.vec_f2up.txt’ ‘uni_p1_20up-p2_25up.txt’
checkRd: (-1) matches.Rd:33: Lost braces; missing escapes or markup?
    33 | be set to an index value of \code{length+1}.  If {indexes=FALSE}, they will
       |                                                  ^
File ‘grr/libs/grr.so’:
  Found non-API call to R: ‘STRING_PTR’
File ‘grr/libs/grr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) runGRM.Rd:24: Lost braces
    24 |    from \code{\link{mirt}} or code{\linkS4class{lavaan}} from from
       |                                   ^
checkRd: (-1) GRS.Powerfunc.Rd:22: Lost braces
    22 | {Power: }{Matrix of power values plotted}
       |          ^
checkRd: (-1) fmddisc.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:46: Escaped LaTeX specials: \_
checkRd: (-1) schuster.Rd:54: Escaped LaTeX specials: \&
Found the following files/directories:
  ‘FMD mag discontinuities_disc.png’ ‘FMD mag
  discontinuities_disc1.res’ ‘FMD mag discontinuities_disc2.res’
  ‘IDYLLWILD_bvmed.png’ ‘IDYLLWILD_fig.png’ ‘Schuster's
  diagram_schu.png’ ‘hour.res’
checkRd: (-1) qdb.p.correct.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{refpts}{a numeric vector used as a reference point to determine the correct side of the \code{qdb} for classifying \code{x}. The \code{length(refpts)} should be equal to {ncol(x)}. Default to \code{colMeans(x)}. }
       |                                                                                                                                                                                 ^
checkRd: (-1) crossval.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) crossval.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gsbm_mcgd_parallel.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘expected_time.R’ ‘gs_info_ahr.R’ ‘gs_update_ahr.Rd’ ‘to_integer.Rd’
checkRd: (-1) lisiecki2005.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lisiecki2005.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) lisiecki2005.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spratt2016.Rd:29: Lost braces in \itemize; meant \describe ?
File ‘gsl/libs/gsl.so’:
  Found non-API calls to R: ‘EXTPTR_PTR’, ‘EXTPTR_TAG’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespace in Imports field not imported from: ‘devtools’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) artset1987.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tumor.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gte.Rd:98: Lost braces; missing escapes or markup?
    98 | \code{left} and {right} for illustrative purpose), one would need a third variable (\code{status}) taking the value 0 
       |                 ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘adjust_speed.R’ ‘adjust_speed.Rd’ ‘gps_as_sflinestring.Rd’
    ‘gps_as_sfpoints.Rd’ ‘gtfs2gps.Rd’ ‘write_gtfs.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gfrance85.Rd’
checkRd: (-1) PLSSVD.Rd:24: Lost braces; missing escapes or markup?
    24 | The number of low-dimension (k < {N, M, L}, Default: .minDim(X, Y))
       |                                  ^
checkRd: (-1) guidedPLS.Rd:33: Lost braces; missing escapes or markup?
    33 | The number of low-dimension (k < {N, M, L, O}, Default: .minDim(X1, X2, Y1, Y2))
       |                                  ^
checkRd: (-1) sPLSDA.Rd:24: Lost braces; missing escapes or markup?
    24 | The number of low-dimension (k < {N, M, L}, Default: .minDim(X, Y))
       |                                  ^
checkRd: (-1) guild_merge.Rd:38: Lost braces; missing escapes or markup?
    38 |     \item{\code{summary_name}}{Name used for the run summary. Use '${run_id}' in the name to include the run ID.}
       |                                                                     ^
checkRd: (-1) guild_merge_cli.Rd:88: Lost braces; missing escapes or markup?
    88 | \item{summary_name}{Name used for the run summary. Use '${run_id}' in the name to include the run ID.}
       |                                                          ^
Found the following files/directories:
  ‘RRprof.out’
Namespace in Imports field not imported from: ‘RUnit’
  All declared Imports should be used.
checkRd: (-1) esSim.Rd:81: Lost braces; missing escapes or markup?
    81 | \eqn{83} SNPs are in cluster {-}, \eqn{714} SNPs are in cluster \eqn{0},
       |                              ^
checkRd: (-1) esSimDiffPriors.Rd:91: Lost braces; missing escapes or markup?
    91 | \eqn{64} SNPs are in cluster {-}, \eqn{708} SNPs are in cluster \eqn{0},
       |                              ^
File ‘GWASExactHW/libs/GWASExactHW.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/gWidgets2tcltk.Rcheck/00install.out’ for details.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.R’
Namespaces in Imports field not imported from:
  ‘doParallel’ ‘foreach’ ‘spgwr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘DT’ ‘attempt’ ‘corpcor’ ‘glue’ ‘htmltools’ ‘pkgload’ ‘processx’
  ‘tools’
  All declared Imports should be used.
Found the following files/directories:
  ‘testdata1.txt’ ‘testdata2.txt’ ‘testdata3.txt’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘DT’ ‘gsubfn’ ‘stringr’
  All declared Imports should be used.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.ga.breed’ ‘.ga.fitness’ ‘.ga.init’ ‘.ga.mutate’ ‘.ga.step’
  ‘.ga.weight’
File ‘hawkes/libs/hawkes.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++14: please drop specification unless essential
checkRd: (-1) deff.sigma.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) deff.sigma.Rd:35: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
checkRd: (-1) phenowheat.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) phenowheat.Rd:19: Lost braces in \enumerate; meant \describe ?
File ‘HDGLM/libs/HDGLM.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lvma_utils.R’
Namespaces in Imports field not imported from:
  ‘MCMCpack’ ‘isotone’ ‘png’ ‘questionr’ ‘rprojroot’ ‘tidyverse’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘the_XXX.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plt-gartner-magic-chart.R’ ‘utils-save-to-excel.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ts-random-walk.R’ ‘ts-vva-plot.R’
Namespaces in Imports field not imported from:
  ‘RandomWalker’ ‘TidyDensity’ ‘healthyR’ ‘healthyR.ai’ ‘healthyR.data’
  ‘healthyR.ts’ ‘tidyAML’
  All declared Imports should be used.
Malformed Title field: should not end in a period.
checkRd: (-1) colByValue.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.}
       |                       ^
checkRd: (-1) heatmaply.Rd:282: Lost braces
   282 | row and column dendrograms. The default uses stats{reorder.dendrogram}}
       |                                                   ^
checkRd: (-1) heatmapr.Rd:93: Lost braces
    93 | \item{reorderfun}{function(d, w) of dendrogram and weights for reordering the row and column dendrograms. The default uses stats{reorder.dendrogram}}
       |                                                                                                                                 ^
checkRd: (-1) is.plotly.Rd:16: Lost braces
    16 | Helpful for the plot_method in link{heatmaply}.
       |                                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘predict.heckmange.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) marker_h2.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) marker_h2_means.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:41-43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) repeatability.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:52-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:55-58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:59-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:61-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:66-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) glm.hermite.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) phermite.Rd:38: Lost braces; missing escapes or markup?
    38 |   {b} and \code{m} to be lower (or greater) than \code{q}.
       |   ^
checkRd: (-1) hero.Rd:67-68: Lost braces
    67 | then \code{\link[pbapply]{pblapply}} is used. If code{package ==
       |                                                      ^
checkRd: (-1) hero.Rd:69: Lost braces
    69 | code{package == "Rmpi"}, then \code{\link[Rmpi]{mpi.applyLB}} is used.}
       |     ^
checkRd: (-1) predictPair.Rd:20: Lost braces; missing escapes or markup?
    20 | A number in the set {-1, 0, 1}, where 1 means row1 is predicted to
       |                     ^
checkRd: (-1) predictPairInternal.Rd:18: Lost braces; missing escapes or markup?
    18 | A number in the set {-1, 0, 1}, where 1 means row1 is predicted to
       |                     ^
checkRd: (-1) ohio.Rd:104: Escaped LaTeX specials: \&
checkRd: (-1) ohio.Rd:105: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ftp_ls.R’
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘BiocGenerics’ ‘TxDb.Hsapiens.UCSC.hg38.knownGene’
  ‘TxDb.Mmusculus.UCSC.mm10.knownGene’ ‘biomaRt’ ‘ggraph’
  ‘org.Hs.eg.db’ ‘org.Mm.eg.db’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_threshold.R’ ‘compute_chromosomes_length.R’
    ‘create_hidecan_plot.R’ ‘gwaspoly_helper_functions.R’
    ‘input_data_constructors.R’
checkRd: (-1) read.VCF.Rd:21: Lost braces
    21 | Reads a \url{https://samtools.github.io/hts-specs/}{Variant Call Format (VCF)} file into a BED object,
       |                                                    ^
checkRd: (-1) hierNet.Rd:28: Lost braces; missing escapes or markup?
    28 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |               ^
checkRd: (-1) hierNet.logistic.Rd:30: Lost braces; missing escapes or markup?
    30 |     terms, th_{jj}X_j^2, in the model.  Default TRUE.}  
       |               ^
checkRd: (-1) hierNet.logistic.Rd:63: Lost braces
    63 | \seealso{\link{predict.hierNet.logistic},link{hierNet.logistic.path}}
       |                                              ^
checkRd: (-1) hierNet.logistic.path.Rd:39: Lost braces; missing escapes or markup?
    39 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
checkRd: (-1) hierNet.path.Rd:38: Lost braces; missing escapes or markup?
    38 |   terms, th_{jj}X_j^2, in the model.  Default TRUE.}
       |             ^
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘maps.R’ ‘utils.R’
File ‘hipread/libs/hipread.so’:
  Found non-API calls to R: ‘SETLENGTH’, ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) hlt.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hlt.Rd:77-78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hlt.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hltsim.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
Specified C++11: please drop specification unless essential
Fdebug: multiple local function definitions for ‘deb’ with different
  formal arguments
html_describe_con: multiple local function definitions for ‘g’ with
  different formal arguments
checkRd: (-1) nafracCalc.Rd:45: Lost braces
    45 |   as if code{y} were not of class \code{"multipleHmmDataSets"}.
       |             ^
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) sampleMcmc.Rd:93: Lost braces; missing escapes or markup?
    93 |   disable some of them, by adding a \code{$UPDATER_NAME=FALSE} pair to the {updater} argument. Another usage of
       |                                                                            ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘theme_hmsid.Rd’
Namespaces in Imports field not imported from:
  ‘knitr’ ‘rmarkdown’
  All declared Imports should be used.
checkRd: (-1) HOasso.Rd:43: Lost braces; missing escapes or markup?
    43 | Arguments \code{x} and {y} are \code{character} objects and can assume values   \code{"sout"}, \code{"dout"}, \code{"lout"}, \code{"sin"}, \code{"din"}, \code{"lin"} representing the out-strength, out-degree, out-log-strength, in-strength, in-degree, and in-log-strength respectively.
       |                        ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘daily_temp.R’ ‘extra_viz.R’ ‘instrumental_temp.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘rstar_glm.Rd’ ‘run_sim_rstar_glm.Rd’ ‘sim_rstar_glm.Rd’
Namespaces in Imports field not imported from:
  ‘RSpectra’ ‘ggrepel’ ‘markdown’ ‘matrixStats’ ‘reshape2’ ‘tidyr’
  ‘uuid’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘survival’
  All declared Imports should be used.
checkRd: (-1) hd.ord.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hd.ord.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hot.deck.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) HPLB.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) HPLB.Rd:38: Lost braces in \itemize; meant \describe ?
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘quantreg’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
File ‘hsphase/libs/hsphase.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
File ‘htmltools/libs/htmltools.so’:
  Found non-API calls to R: ‘SETLENGTH’, ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespaces in Imports field not imported from:
  ‘recipes’ ‘tune’
  All declared Imports should be used.
checkRd: (-1) simplePostToHost.Rd:14: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
File ‘humaniformat/libs/humaniformat.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) CalcROC.Rd:47: Lost braces
    47 | The accuracy of the classifier is the mean value of dQuote{(optSn, optSp)} for two-class problem and the mean value of \dQuote{(optSn, optSp,optS3)} for three-class problem.
       |                                                           ^
Namespace in Imports field not imported from: ‘mapproj’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘R6’ ‘xml2’
  All declared Imports should be used.
checkRd: (-1) simgl.Rd:50: Lost braces; missing escapes or markup?
    50 | Uses the {updog} R package for simulating read counts and generating
       |          ^
Namespaces in Imports field not imported from:
  ‘colourpicker’ ‘shiny’ ‘wordcloud2’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_divergence.R’ ‘add_levelpaths.R’ ‘add_pfafstetter.R’
    ‘add_streamorder-level.R’ ‘add_toids.R’ ‘disambiguate.R’
    ‘format_index_ids.Rd’ ‘get_hydro_location.R’
    ‘index_points_to_lines.R’ ‘make_attribute_topology.R’
    ‘make_index_ids.R’ ‘make_node_topology.R’
    ‘navigate_connected_paths.R’ ‘navigation_network.R’ ‘sort_network.R’
    ‘to_flownetwork.R’ ‘utils.R’
checkRd: (-1) extractPeriod.Rd:57: Lost braces
    57 | NOTE: all the dates in the datalist should follow the format in ?as.Date{base}.
       |                                                                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘psubs.Rd’ ‘pwa.Rd’ ‘tennis.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘hypothesis-api.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘equations.R’
Running examples in ‘I14Y-Ex.R’ failed
The error most likely occurred in:

> ### Name: i14y_get_data_service_registration
> ### Title: Get the current registration status of the specified
> ###   dataservice.
> ### Aliases: i14y_get_data_service_registration
> 
> ### ** Examples
> 
> i14y_get_data_service_registration(
+  id = "0aaed69d-15ff-415a-8a38-4f9f0c3b429e"
+ )
Error in `httr2::req_perform()`:
! HTTP 404 Not Found.
Backtrace:
     ▆
  1. └─I14Y::i14y_get_data_service_registration(id = "0aaed69d-15ff-415a-8a38-4f9f0c3b429e")
  2.   └─httr2::req_perform(req)
  3.     └─httr2:::handle_resp(req, resp, error_call = error_call)
  4.       └─httr2:::resp_failure_cnd(req, resp, error_call = error_call)
  5.         ├─rlang::catch_cnd(...)
  6.         │ ├─rlang::eval_bare(...)
  7.         │ ├─base::tryCatch(...)
  8.         │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  9.         │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 10.         │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 11.         │ └─base::force(expr)
 12.         └─rlang::abort(...)
Execution halted
Running ‘testthat.R’ [4s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(I14Y)
  > 
  > test_check("I14Y")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 28 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-i14y_get_data_service_registration.R:5:3'): i14y_get_data_service_registration() returns a character object ──
  <httr2_http_404/httr2_http/httr2_error/rlang_error/rlang_error/error/condition>
  Error in `httr2::req_perform(req)`: HTTP 404 Not Found.
  Backtrace:
       ▆
    1. └─I14Y::i14y_get_data_service_registration(id = "0aaed69d-15ff-415a-8a38-4f9f0c3b429e") at test-i14y_get_data_service_registration.R:5:3
    2.   └─httr2::req_perform(req)
    3.     └─httr2:::handle_resp(req, resp, error_call = error_call)
    4.       └─httr2:::resp_failure_cnd(req, resp, error_call = error_call)
    5.         ├─rlang::catch_cnd(...)
    6.         │ ├─rlang::eval_bare(...)
    7.         │ ├─base::tryCatch(...)
    8.         │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
    9.         │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   10.         │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   11.         │ └─base::force(expr)
   12.         └─rlang::abort(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 28 ]
  Error: Test failures
  Execution halted
checkRd: (-1) IATData.Rd:24: Lost braces; missing escapes or markup?
    24 | Dan Martin {dpmartin42@gmail.com}
       |            ^
File ‘ibmcraftr/libs/ibmcraftr.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) setServerLogLevel.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) setServerLogLevel.Rd:24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) betaS1lr.Rd:28: Lost braces; missing escapes or markup?
    28 |  \item{Rm1U}{matrix R^{-1}U (see reference).}
       |                       ^
checkRd: (-1) lrsmoother.Rd:32: Lost braces; missing escapes or markup?
    32 |   R^{-1}U (see reference) and \link{smoothCon} for the definition of smoothobject}
       |     ^
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
checkRd: (-1) get_p.Rd:29: Lost braces; missing escapes or markup?
    29 | \item A numeric p_norm, giving the factor between p_{gs} and phi_{0gs} (see paper for details).
       |                                                     ^
checkRd: (-1) get_p.Rd:29: Lost braces; missing escapes or markup?
    29 | \item A numeric p_norm, giving the factor between p_{gs} and phi_{0gs} (see paper for details).
       |                                                                  ^
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘icd_lookup.R’
Namespace in Imports field not imported from: ‘knitr’
  All declared Imports should be used.
checkRd: (-1) ICEscale.Rd:53: Escaped LaTeX specials: \^
checkRd: (-1) dpwdg.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) dpwdg.Rd:15: Escaped LaTeX specials: \$
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app.R’
Namespaces in Imports field not imported from:
  ‘digest’ ‘purrr’ ‘tidyverse’
  All declared Imports should be used.
checkRd: (-1) Bpa.Rd:39-40: Lost braces
    39 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) Fpa.Rd:42-43: Lost braces
    42 | stocks. \doi{10.17895/ices.pub.3036}{\emph{ICES Advice
       |                                     ^
checkRd: (-1) icesRound.Rd:64-65: Lost braces
    64 | \doi{10.17895/ices.pub.3038}{\emph{ICES Advice Technical
       |                             ^
checkRd: (-1) mohn.Rd:71-72: Lost braces
    71 | \doi{10.17895/ices.pub.5997}{\emph{ICES Scientific Reports
       |                             ^
Specified C++11: please drop specification unless essential
checkRd: (-1) ic.ranks.Rd:46: Lost braces; missing escapes or markup?
    46 | \item{n_adjust}{an integer-valued entry for advanced control over the lower- or upper-bound algorithms. When the "adjustL" parameter is TRUE, the new value of n_adjust is chosen automatically as the best adjustment on the lower affine bound of the chi-square quantiles according to the data. If adjustU is TRUE, then n_adjust contains the point at which the upper affine bound is tangent on the chi-square quantiles. Possible values {1,...,n-1}. If both adjustL and adjustU variables are left FALSE, then the default choice is that the lower affine bound passes between the chi-square quantiles at 1 and n-1 degrees of freedom, and the upper affine bound is tangent on n-1.}
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                  ^
Specified C++11: please drop specification unless essential
checkRd: (-1) data.Rd:7: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:8: Lost braces in \itemize; meant \describe ?
checkRd: (-1) data.Rd:9: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calibrate_LLR.R’ ‘concordance.R’ ‘contentmask.R’ ‘create_corpus.R’
    ‘delta.R’ ‘density_plot.R’ ‘impostors.R’ ‘lambdaG.R’ ‘lambdaG.Rd’
    ‘lambdaG_visualize.R’ ‘lambdaG_visualize.Rd’ ‘most_similar.Rd’
    ‘ngram_tracing.R’ ‘performance.R’ ‘posterior.R’ ‘tokenize_sents.R’
    ‘utils.R’ ‘vectorize.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘idmc_transform_daily.R’
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
File ‘IFP/libs/IFP.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘kableExtra’ ‘knitr’ ‘xtable’
  All declared Imports should be used.
Found the following assignments to the global environment:
File ‘IgorR/R/ReadIgorBinary.R’:
  assign(WaveName, rval, envir = .GlobalEnv)
File ‘igraph/libs/igraph.so’:
  Found non-API call to R: ‘Rf_allocSExp’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ig_to_igr.R’ ‘st_igr_as_sf.R’ ‘st_irishgridrefs.R’
checkRd: (-1) simHawkes1a.Rd:35: Lost braces; missing escapes or markup?
    35 | distribution; 'd${dis}' gives the density function \eqn{g(\cdot)}.}
       |                  ^
Package required but not available: ‘asbio’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Specified C++11: please drop specification unless essential
checkRd: (-1) lab.qcs.Rd:24: Lost braces
    24 | It develops an object of \code{lab.qcs}-code{link{class}} to perform statistical quality control.
       |                                             ^
checkRd: (-1) lab.qcs.Rd:24: Lost braces
    24 | It develops an object of \code{lab.qcs}-code{link{class}} to perform statistical quality control.
       |                                                  ^
checkRd: (-1) define_target_function.Rd:41: Lost braces; missing escapes or markup?
    41 | be done either as a single vector of values (e.g. `function(x) { ... }`), or individual inputs for each parameter
       |                                                                ^
checkRd: (-1) define_target_function.Rd:42: Lost braces; missing escapes or markup?
    42 | (e.g. `function(x1, x2) { ... }`). If a single vector is used, all parameters will be passed to the target function as
       |                         ^
checkRd: (-1) image_contour_detector.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) image_contour_detector.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) image_contour_detector.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitSpline.Rd:109: Lost braces
   109 |        \code{response} and it will have the same order of code{x} as \code{data}. 
       |                                                               ^
Running ‘testthat.R’ [3s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(imagefluency)
  > 
  > test_check("imagefluency")
  free(): double free detected in tcache 2
Specified C++11: please drop specification unless essential
checkRd: (-1) image_line_segment_detector.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) image_line_segment_detector.Rd:66-72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) image_line_segment_detector.Rd:73-76: Lost braces in \itemize; \value handles \item{}{} directly
Specified C++11: please drop specification unless essential
checkRd: (-1) imagesToKerasInput.Rd:23: Lost braces
    23 | \item{grayscale}{logical. Defines color channels of images: 1 if code{TRUE}, 3 if \code{FALSE}.}
       |                                                                      ^
Specified C++11: please drop specification unless essential
checkRd: (-1) oversample.Rd:23-24: Lost braces
    23 | minority examples and majority ones, that is, the quotient {size of
       |                                                            ^
checkRd: (-1) oversample.Rd:24: Lost braces; missing escapes or markup?
    24 | minority class}/{size of majority class}. There are methods, such as
       |                 ^
checkRd: (-1) stringCSSRule.Rd:22: Lost braces
    22 | using the {{placeholder}} convention.
       |           ^
checkRd: (-1) stringTemplate.Rd:23: Lost braces
    23 | placeholders are marked using the {{placeholder}} convention.
       |                                   ^
checkRd: (-1) stringTemplate.Rd:12: Lost braces
    12 | {{placeholder}} format.}
       | ^
Namespaces in Imports field not imported from:
  ‘data.table’ ‘dplyr’ ‘haven’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘pscl’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
checkRd: (-1) imptree_params.Rd:26-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imptree_params.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) imptree_params.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.imptree.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.imptree.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘lme4’ ‘reshape2’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘blm.R’ ‘checkBaseline.R’ ‘cleaning.R’ ‘countMissing.R’
    ‘getStanParameter.R’ ‘logit.R’ ‘negativeBionomial.R’
checkRd: (-1) kmpp.Rd:27: Lost braces
    27 |   \item{call}{a string containing the matched function call that generates this sQuote{inaparc} object.}
       |                                                                                       ^
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) make_likelihood_matrix.Rd:16: Lost braces; missing escapes or markup?
    16 | This function creates a matrix such that P[t, s] = P(C = t | I = s) = theta_{t-s} for s <= t and 0 otherwise.
       |                                                                             ^
checkRd: (-1) IndexComp.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) IndexComp.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) process_stats.Rd:11: Lost braces; missing escapes or markup?
    11 | the {janitor} package}
       |     ^
checkRd: (-1) theme_industRial.Rd:40: Lost braces; missing escapes or markup?
    40 | adapted from the package {cowplot} by Claus O.Wilke and reflects the principles
       |                          ^
checkRd: (-1) theme_industRial.Rd:45: Lost braces; missing escapes or markup?
    45 | It basically combines the half open theme with a grid background from {cowplot}
       |                                                                       ^
Namespace in Imports field not imported from: ‘utils’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘svglite’
  All declared Imports should be used.
checkRd: (-1) school23.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) school23.Rd:35: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
File ‘infotheo/libs/infotheo.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Found the following files/directories:
  ‘c.txt’ ‘rho.txt’ ‘sta.txt’ ‘topo.txt’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gg_injprev_polar.R’ ‘gg_injriskmatrix.R’ ‘helpers.R’ ‘injprev.R’
    ‘injsummary.R’ ‘prepare_data.R’ ‘utils.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_functions.R’
File ‘INLAspacetime/libs/INLAspacetime.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    INSPECTumours (development version)
File ‘INSPIRE/libs/INSPIRE.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) ask.user.yn.question.Rd:44: Lost braces; missing escapes or markup?
    44 | menu in the {utils} package, yesno in the {devtools} package.
       |             ^
checkRd: (-1) ask.user.yn.question.Rd:44: Lost braces; missing escapes or markup?
    44 | menu in the {utils} package, yesno in the {devtools} package.
       |                                           ^
checkRd: (-1) install.FFmpeg.Rd:25: Lost braces; missing escapes or markup?
    25 | This function is useful for saveVideo() in the {animation} package.
       |                                                ^
checkRd: (-1) install.SWFTools.Rd:27: Lost braces; missing escapes or markup?
    27 | This function is useful for saveSWF() in the {animation} package.
       |                                              ^
checkRd: (-1) os.shutdown.Rd:25: Lost braces; missing escapes or markup?
    25 | This function is a modified version of Yihui's shutdown function from the {fun} package.
       |                                                                           ^
Malformed Title field: should not end in a period.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘autoplot.restricted.Rd’ ‘autoplot.riskfactor.Rd’ ‘rating_factors.Rd’
Running ‘anisotropyChoice.R’ [10s/23s]
  Running ‘biasCorr.R’ [9s/22s]
  Running ‘findLocalBias.R’ [9s/16s]
  Running ‘findRegionalBias.R’ [9s/21s]
  Running ‘optimizingTest.R’ [0m/89m]
Running the tests in ‘tests/optimizingTest.R’ failed.
Complete output:
  > options(error = recover)
  > #test = TRUE
  > test = FALSE
  > mantest = FALSE
  > set.seed(1)
  > library(intamapInteractive)
  Loading required package: intamap
  Loading required package: sp
  > library(gstat)
  > #require(maptools)
  > # for SIC2004 dataset
  > data(sic2004)
  > coordinates(sic.val) = ~x+y
  > observations = sic.val["dayx"] 
  > coordinates(sic.grid)=~x+y
  > predGrid = sic.grid
  > 
  > #Finding the polygon for the candidate locations
  > bb = bbox(predGrid)
  > boun = SpatialPoints(data.frame(x=c(bb[1,1],bb[1,2],bb[1,2],bb[1,1],bb[1,1]),
  +                                 y=c(bb[2,1],bb[2,1],bb[2,2],bb[2,2],bb[2,1])))
  > Srl = Polygons(list(Polygon(boun)),ID = as.character(1))
  > candidates = SpatialPolygonsDataFrame(SpatialPolygons(list(Srl)),
  +                                       data = data.frame(ID=1))
  > 
  > # Limits the number of prediction locations to have faster UK 
  > # computations
  > nGrid = dim(coordinates(predGrid))[1]
  > predGrid = predGrid[sample(seq(1,nGrid),1000),]
  > # Fits the variogram model (using function fit.variogram from package
  > # gstat)
  > model = fit.variogram(variogram(dayx~x+y, sic.val), vgm(50, "Sph", 250000, 250))
  > #plot(variogram(dayx~x+y, sic.val), model=model)
  > # Computes the Mukv of the current network
  > initMukv <- calculateMukv(observations, predGrid, model, formulaString = dayx~x+y)
  OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Namespace in Imports field not imported from: ‘splines2’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Found the following files/directories:
  ‘Error_Estimation_Response_1.tiff’ ‘Error_Estimation_Response_2.tiff’
  ‘Error_Estimation_Response_3.tiff’
Namespace in Imports field not imported from: ‘broom’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘moonBook’
  All declared Imports should be used.
checkRd: (-1) remit.Rd:32: Lost braces
    32 | A data set to replicate the findings of Escrib\`{a}-Folch,
       |                                                 ^
checkRd: (-1) remit.Rd:38: Lost braces
    38 | Escrib\`{a}-Folch, A., Meseguer, C. and Wright, J. (2018), Remittances and Protest in Dictatorships. American Journal of Political Science, 62: 889-904. \doi{10.1111/ajps.12382}
       |         ^
Namespaces in Imports field not imported from:
  ‘curl’ ‘readxl’
  All declared Imports should be used.
checkRd: (-1) interval-internal.Rd:40: Lost braces
    40 | \item{dqfunc}{function, density of the results of the quantile function, e.g., function(x){dnorm(qnorm(x))} (used for 'general' scores, 
       |                                                                                           ^
Specified C++11: please drop specification unless essential
Running ‘testthat.R’ [0m/90m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(intkrige)
  Loading required package: sp
  Loading required package: gstat
  Loading required package: raster
  > 
  > test_check("intkrige")
  OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
  OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
checkRd: (-1) decompose_volume.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decompose_volume.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fit_volume.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) forecast_volume.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_plots.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_plots.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_plots.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘dplyr’
  All declared Imports should be used.
checkRd: (-1) intRvals-package.Rd:60: Lost braces
    60 | B\'{e}dard, J. & Gauthier, G. 1986. Assessment of faecal output in geese. Journal of Applied Ecology, 23, 77-90.
       |    ^
checkRd: (-1) partition.Rd:64: Lost braces
    64 | Bates, D., M\"{a}chler, M., Bolker, B.M. & Walker, S.C. (2015). Fitting linear mixed-effects models using lme4. Journal of Statistical Software, 67, 1-48.
       |               ^
Specified C++11: please drop specification unless essential
checkRd: (-1) cox_cure_net.Rd:132: Lost braces
   132 | \code{surv_lambda} (or code{cure_lambda}) that produces all-zero
       |                            ^
checkRd: (-1) Inventorymodel-package.Rd:34: Lost braces
    34 | M.G. Fiestras-Janeiro, I. García-Jurado, A. Meca, M.A. Mosquera (2015). Cooperation on capacitated inventory situations with fixed holding costs. emph{European Journal of Operational Research}, \bold{241}(3), 719--726.
       |                                                                                                                                                       ^
Namespaces in Imports field not imported from:
  ‘fdrtool’ ‘nimble’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aggregate.R’ ‘append_rows.R’ ‘class_intervals.R’ ‘extract_dt_comp.R’
    ‘helpers.R’ ‘join_data.R’ ‘mutate.R’ ‘read_text.R’ ‘separate_var.R’
    ‘sort_vars.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘decomposition.R’ ‘feat.R’ ‘forecastplot.R’ ‘iNZightTS.R’ ‘rawplot.R’
    ‘seasonplot.R’
checkRd: (-1) f.influence.Rd:25: Lost braces; missing escapes or markup?
    25 | where F is the field of influence, k is order of influence, l_{ij} is the ith row and jth column element of the Leontief Inverse and -s indicates the sth element has been removed.
       |                                                               ^
checkRd: (-1) aiPux.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPux.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aiPuxComposite.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dls2007.Rd:19: Lost braces
    19 | impact. emph{Journal of Applied Psychology}, 92(5), 1380.
       |             ^
checkRd: (-1) paretoXX.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXX.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXX.Rd:22-23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:30-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) paretoXY.Rd:32-33: Lost braces in \itemize; \value handles \item{}{} directly
File ‘iotools/libs/iotools.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘NAMED’, ‘SETLENGTH’,
    ‘SET_NAMED’
File ‘iotools/libs/iotools.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

Compiled code should not call non-API entry points in R.
It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespaces in Imports field not imported from:
  ‘Matrix’ ‘expm’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_lhat_glm.Rd’ ‘ipd.R’ ‘logistic_get_stats.Rd’ ‘ols_get_stats.Rd’
    ‘postpi_analytic_ols.Rd’ ‘postpi_boot_logistic.Rd’
    ‘postpi_boot_ols.Rd’ ‘ppi_logistic.Rd’ ‘ppi_mean.Rd’ ‘ppi_ols.R’
    ‘ppi_ols.Rd’ ‘ppi_plusplus_logistic.Rd’
    ‘ppi_plusplus_logistic_est.Rd’ ‘ppi_plusplus_mean.Rd’
    ‘ppi_plusplus_mean_est.Rd’ ‘ppi_plusplus_ols.Rd’
    ‘ppi_plusplus_ols_est.Rd’ ‘ppi_plusplus_quantile.Rd’
    ‘ppi_plusplus_quantile_est.Rd’ ‘ppi_quantile.Rd’ ‘pspa_logistic.Rd’
    ‘pspa_mean.Rd’ ‘pspa_ols.Rd’ ‘pspa_poisson.Rd’ ‘pspa_quantile.Rd’
    ‘simdat.R’
checkRd: (-1) check_convergence.Rd:47: Lost braces
    47 | \code{conv_plot}: code{ipm} invisibly.
       |                       ^
checkRd: (-1) init_ipm.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:63-65: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:70-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) init_ipm.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) make_ipm.Rd:276: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:277-281: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:282-286: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:287-291: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) make_ipm.Rd:292-293: Lost braces in \itemize; \value handles \item{}{} directly
Namespaces in Imports field not imported from:
  ‘Rdpack’ ‘glmnet’
  All declared Imports should be used.
checkRd: (-1) constrained.Rd:49: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
checkRd: (-1) partial_eigen.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) partial_eigen.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:41-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:47-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) prcomp_irlba.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ssvd.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) bp.coeff.raw.Rd:5: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp.coeff.raw.Rd:53: Escaped LaTeX specials: \&
checkRd: (-1) fleiss.kappa.raw.Rd:52: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) landis.koch.bf.Rd:17: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc.pvalues.R’ ‘helper.R’ ‘hypothesis_templates.R’ ‘irtpwr.R’
    ‘mml.fit.R’ ‘setup.data.R’
checkRd: (-1) analyseISE.Rd:66: Lost braces; missing escapes or markup?
    66 |         False positive rate used for detection threshold (not output) to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                                                     ^
checkRd: (-1) analyseISE.Rd:69: Lost braces; missing escapes or markup?
    69 |         False negative rate used to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                ^
checkRd: (-1) describeISE.Rd:71: Lost braces; missing escapes or markup?
    71 |         False positive rate used for detection threshold (not output) to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                                                     ^
checkRd: (-1) describeISE.Rd:74: Lost braces; missing escapes or markup?
    74 |         False negative rate used to calculate LOD(alpha, beta) {only returned if SN = NA}
       |                                                                ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘chain-simulation.R’
File ‘isingLenzMC/libs/isingLenzMC.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iso8601todataframe.R’
Specified C++11: please drop specification unless essential
File ‘isoband/libs/isoband.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) CLM.Rd:30: Lost braces
    30 | item{tau0}{the mean circular Kendall Tau of the initial order with the data.}
       |     ^
checkRd: (-1) CLM.Rd:30: Lost braces
    30 | item{tau0}{the mean circular Kendall Tau of the initial order with the data.}
       |           ^
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calibfit.R’ ‘isofind.R’ ‘prepsources.R’ ‘serialize.R’
Specified C++14: please drop specification unless essential
Namespace in Imports field not imported from: ‘rstantools’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bicycle_theft.R’ ‘car_fleet.R’ ‘crimes_against_life.R’
    ‘gun_seizure.R’ ‘gun_seizure_historical.R’ ‘monthly_stats.R’
    ‘monthly_stats_dictionary.R’ ‘population.R’ ‘spatial_info.R’
    ‘upp_data.R’ ‘yearly_stats.R’ ‘yearly_stats_dictionary.R’
Namespace in Imports field not imported from: ‘curl’
  All declared Imports should be used.
checkRd: (-1) is_israd_database.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) is_israd_database.Rd:26: Lost braces in \itemize; meant \describe ?
Namespace in Imports field not imported from: ‘readr’
  All declared Imports should be used.
Found the following files/directories:
  ‘RMTplot.pdf’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iRNGStream.R’ ‘r_to_py.iteror.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘itrax_munsell.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_conservation_status.R’ ‘get_vernacularname.R’
checkRd: (-1) sTsls.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{pi}{the matrix E[XZ']E[ZZ']^{-1}}
       |                                   ^
checkRd: (-1) sTslsSplines.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{pi}{matrix, corresponds to E[XZ']E[ZZ']^{-1}, the first stage
       |                                               ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ivo_flextable_theme.Rd’ ‘ivo_table.Rd’ ‘ivo_table_add_mask.Rd’
    ‘ivo_table_masked.Rd’ ‘ivo_tables.R’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘dplyr’ ‘magrittr’
  All declared Imports should be used.
checkRd: (-1) jaccard.test.Rd:41: Lost braces; missing escapes or markup?
    41 | The {bootstrap} method uses resampling with replacement binary vectors to compute a p-value (see optional arguments).
       |     ^
Namespaces in Imports field not imported from:
  ‘fBasics’ ‘reshape’ ‘tidyr’ ‘utils’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘DiagrammeR’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘progress’
  All declared Imports should be used.
Found the following Makefile(s) with an include directive with a pathname using R_HOME:
  src/jvm-w32/Makefile
Even though not recommended, variable R_HOME may contain spaces.
Makefile directives use space as a separator and there is no portable
way to quote/escape the space in Make rules and directives.  However,
one can and should quote pathnames when passed from Makefile to the
shell, and this can be done specifically when invoking Make recursively.
It is therefore recommended to use the Make '-f' option to include files
in directories specified using R_HOME.  This option can be specified
multiple times to include multiple Makefiles.  Note that 'Makeconf' is
included automatically into top-level makefile of a package.
More information can be found in 'Writing R Extensions'.
File ‘JavaGD/libs/JavaGD.so’:
  Found ‘__sprintf_chk’, possibly from ‘sprintf’ (C)
    Object: ‘jGDtalk.o’
File ‘JavaGD/libs/JavaGD.so’:
  Found non-API call to R: ‘Rf_gsetVar’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespace in Imports field not imported from: ‘ids’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘jdenticon.R’
Namespaces in Imports field not imported from:
  ‘RcppParallel’ ‘rstantools’
  All declared Imports should be used.
Running examples in ‘JFE-Ex.R’ failed
The error most likely occurred in:

> ### Name: getFrench.Factors
> ### Title: Download seven asset pricing factors data from the data library
> ###   of Dr. French
> ### Aliases: getFrench.Factors
> 
> ### ** Examples
> 
> 
> getFrench.Factors(filename="F-F_Research_Data_Factors")
trying URL 'http://mba.tuck.dartmouth.edu/pages/faculty/ken.french/ftp/F-F_Research_Data_Factors_CSV.zip'
Content type 'application/x-zip-compressed' length 12330 bytes (12 KB)
==================================================
downloaded 12 KB

Warning in open.connection(file, "rt") :
  cannot locate file 'F-F_Research_Data_Factors.CSV' in zip file '/data/gannet/ripley/R/packages/tests-clang/JFE.Rcheck/file299af17f4716cd.zip'
Error in open.connection(file, "rt") : cannot open the connection
Calls: getFrench.Factors -> read.csv -> read.table -> open -> open.connection
Execution halted
Found the following files/directories:
  ‘file299af17f4716cd.zip’
Specified C++11: please drop specification unless essential
checkRd: (-1) data_timeinv.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{X5}{categorical covariate taking values from {1, 2, 3, 4, 5}; time-invariant}
       |                                                    ^
checkRd: (-1) data_timeinv.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{g}{true latent class identifier {1, 2, 3, 4}, which is determined by 
       |                                       ^
checkRd: (-1) data_timevar.Rd:15: Lost braces; missing escapes or markup?
    15 | \item{X5}{categorical covariate taking values from {1, 2, 3, 4, 5}; time-varying}
       |                                                    ^
checkRd: (-1) data_timevar.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{g}{true latent class identifier {1, 2, 3, 4}, which is determined by 
       |                                       ^
checkRd: (-1) jointLPM.Rd:298: Lost braces; missing escapes or markup?
   298 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2}*I_{n+1}(Y(t)),
       |                                                        ^
checkRd: (-1) jointLPM.Rd:298: Lost braces; missing escapes or markup?
   298 | following transformation b_1 + b_2*I_1(Y(t)) + ... + b_{n+2}*I_{n+1}(Y(t)),
       |                                                                ^
checkRd: (-1) jointLPM.Rd:299: Lost braces; missing escapes or markup?
   299 | where I_1,...,I_{n+1} is the basis of quadratic I-splines. To constraint the
       |                 ^
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                          ^
checkRd: (-1) jmdem.control.Rd:42: Lost braces; missing escapes or markup?
    42 |     The control argument of \code{jmdem} is by default passed to the control argument of {jmdem.fit}, which uses its elements as arguments to {jmdem.control}: the latter provides defaults and sanity checking.
       |                                                                                                                                               ^
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘BayesFactor’ ‘GGally’ ‘GPArotation’ ‘MASS’ ‘PMCMR’ ‘R6’ ‘ROCR’
  ‘afex’ ‘car’ ‘dplyr’ ‘emmeans’ ‘ggrepel’ ‘ggridges’ ‘lavaan’
  ‘multcomp’ ‘mvnormtest’ ‘nnet’ ‘psych’ ‘vcd’ ‘vcdExtra’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helpfunctions_melt.R’
Namespace in Imports field not imported from: ‘doParallel’
  All declared Imports should be used.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘joyn-merge.R’
checkRd: (-1) jrt.Rd:45-46: Lost braces
    45 | \item{Difference models (more or less constrained versions of the
       |      ^
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    54 |  \item{Divide-by-total models (more or less constrained versions of the
       |       ^
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    45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr 
       |                                             ^
checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces; missing escapes or markup?
    45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr 
       |                                                ^
checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces
    45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr 
       |                                                      ^
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘includeFlickr.R’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    pre-release juicr (2017 - 2021)
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘export_to_json.Rd’ ‘import_from_json.Rd’
Namespaces in Imports field not imported from:
  ‘Superpower’ ‘pwr’ ‘shinydashboard’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘just.install.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘kantorovich_ompr.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘kappa_inference.R’
File ‘kappalab/libs/kappalab.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespace in Imports field not imported from: ‘gifski’
  All declared Imports should be used.
checkRd: (-1) get.fit.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get.fit.Rd:50-51: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) get.fit.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) get.fit.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.fit.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.sim.trajectories.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get.sim.trajectories.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘GaussianMixtureCalls.R’
Namespace in Imports field not imported from: ‘base’
  All declared Imports should be used.
checkRd: (-1) kdist.Rd:14: Lost braces; missing escapes or markup?
    14 | The {kdist} functions dk, pk, qk and rk, calculates the K-distribution
       |     ^
File ‘Kendall/libs/Kendall.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Namespaces in Imports field not imported from:
  ‘lme4’ ‘metafor’ ‘nlme’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘mvtnorm’
  All declared Imports should be used.
File ‘KERE/libs/KERE.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) kernelFactory.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{method}{Can be one of the following: POLynomial kernel function (\code{pol}), LINear kernel function (\code{lin}), Radial Basis kernel Function \code{rbf}), random choice (random={pol, lin, rbf}) (\code{random}), burn- in choice of best function (burn={pol, lin, rbf }) (\code{burn}). Use \code{random} or \code{burn} if you don't know in advance which kernel function is best.}
       |                                                                                                                                                                                          ^
checkRd: (-1) kernelFactory.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{method}{Can be one of the following: POLynomial kernel function (\code{pol}), LINear kernel function (\code{lin}), Radial Basis kernel Function \code{rbf}), random choice (random={pol, lin, rbf}) (\code{random}), burn- in choice of best function (burn={pol, lin, rbf }) (\code{burn}). Use \code{random} or \code{burn} if you don't know in advance which kernel function is best.}
       |                                                                                                                                                                                                                                                                   ^
Specified C++11: please drop specification unless essential
checkRd: (-1) compute_all_tests.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compute_all_tests.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compute_all_tests.Rd:65-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sim_SCR_data.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) subjOCCDIF.Rd:23: Lost braces
    23 | the scale on which to evaluate each subject. \code{stype = "ObsScore"} uses the subject's total score. \code{stype = "Theta"} uses the subject's rank on the \code{thetadist} scale. \code{stype = "ThetaML"} uses the maximum likelihood estimate for the subject on the \code{thetadist} scale. code{stype = "ScoreML"} uses the maximum likelihood estimate for the subject on the overall test score scale.
       |                                                                                                                                                                                                                                                                                                       ^
File ‘KernSmoothIRT/libs/KernSmoothIRT.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) useKeys.Rd:13: Lost braces; missing escapes or markup?
    13 | This function adds the {keys} dependencies to your application
       |                        ^
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Minor Changes
checkRd: (-1) kfda.Rd:26: Lost braces
    26 |  \item{kpca.train}{An object of class "kpca". It has results of \code{kpca} function. (see{\code{\link[kernlab]{kpca}}} (in package \pkg{kernlab}))}
       |                                                                                           ^
checkRd: (-1) kfino_plot.Rd:52: Lost braces; missing escapes or markup?
    52 |        plus the OK values. Prediction corresponds to E[X_{t} | Y_{1...t}] 
       |                                                          ^
checkRd: (-1) kfino_plot.Rd:52: Lost braces; missing escapes or markup?
    52 |        plus the OK values. Prediction corresponds to E[X_{t} | Y_{1...t}] 
       |                                                                  ^
Namespace in Imports field not imported from: ‘splines’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘RcppProgress’
  All declared Imports should be used.
Namespaces in Imports field not imported from:
  ‘fitdistrplus’ ‘plotly’
  All declared Imports should be used.
checkRd: (-1) mount_appdata.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{x}{An object of class \code{KinPairData} or {KinPairSimulation}}
       |                                                   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘balance.R’ ‘data.R’ ‘order.R’ ‘revise.R’ ‘utils.R’
checkRd: (-1) klausuR.answ-class.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:18-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausuR.answ-class.Rd:35: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) klausur.Rd:107-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:110-111: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) klausur.Rd:114-116: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:117-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:119-120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:121-123: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:124-126: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:147: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) klausur.Rd:152-155: Lost braces in \itemize; meant \describe ?
Namespaces in Imports field not imported from:
  ‘Rcpp’ ‘SnowballC’ ‘stringi’
  All declared Imports should be used.
checkRd: (-1) plotkmc.Rd:21: Lost braces; missing escapes or markup?
    21 |     list of two functions,flist=list( f1=function( x ) { x } ,f2=function( x ) { x^2 } )  
       |                                                        ^
checkRd: (-1) plotkmc.Rd:21: Lost braces; missing escapes or markup?
    21 |     list of two functions,flist=list( f1=function( x ) { x } ,f2=function( x ) { x^2 } )  
       |                                                                                ^
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Unknown package ‘gpg’ in Rd xrefs
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘FNN’ ‘caret’ ‘datasets’ ‘dplyr’ ‘e1071’ ‘psycho’ ‘rhandsontable’
  ‘shiny’
  All declared Imports should be used.
checkRd: (-1) knockoff.Rd:22-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knockoff.Rd:25-27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MapPolygon.Rd:20: Lost braces
    20 |   \item{shape}{If the estimators in the function link[KnowBR]{KnowBPolygon} were calculated using an external shape file, it is necessary to indicate the file in this argument. It is not necessary to select any polygon within the file, just to load the whole shape file.}
       |                                                              ^
checkRd: (-1) SurveyQ.Rd:26: Lost braces
    26 |   \item{shape}{If the estimators in the function link[KnowBR]{KnowBPolygon} were calculated using an external shape file, it is necessary to indicate the file in this argument. It is not necessary to select any polygon within the file, just to load the whole shape file.}
       |                                                              ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Koboconnect.R’ ‘other.R’
Namespace in Imports field not imported from: ‘methods’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘tibble’
  All declared Imports should be used.
checkRd: (-1) compose.Rd:13: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) compose.Rd:14: Lost braces in \enumerate; meant \describe ?
File ‘kriging/libs/kriging.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) EGIparallel.Rd:60: Lost braces; missing escapes or markup?
    60 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion.
       |                                    ^
checkRd: (-1) max_sur_parallel.Rd:29: Lost braces; missing escapes or markup?
    29 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion. 
       |                                    ^
checkRd: (-1) max_timse_parallel.Rd:30: Lost braces; missing escapes or markup?
    30 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion. 
       |                                    ^
checkRd: (-1) max_vorob_parallel.Rd:30: Lost braces; missing escapes or markup?
    30 | Finally, one can control the field {optim.option} in order to decide how to optimize the sampling criterion.
       |                                    ^
checkRd: (-1) print_uncertainty_nd.Rd:72: Lost braces
    72 | Optional argument. When set to code{NULL} (default) the function performs the projections on plans spanned by each pair (i,j) of dimension. Otherwise, the argument is an array of size 2 corresponding to the dimensions spanning the (only) plan on which the projection is performed.
       |                                    ^
checkRd: (-1) Predict_kernel_Ridge_MM.Rd:45: Lost braces; missing escapes or markup?
    45 |   and alpha_train is the BLUP of alpha for the model, i.e. alpha_train=Cov(alpha,Y_train)*Var(Y_train)^{-1}*(Y_train - E[Y_train]) }
       |                                                                                                        ^
checkRd: (-1) ks_test_stat.Rd:14: Lost braces
    14 | are valid. See /code{LcKS} for accepted functions.}
       |                     ^
Found the following files/directories:
  ‘KSEA Bar Plot.tiff’ ‘KSEA Kinase Scores.csv’
  ‘KSEA.Merged.Heatmap.png’ ‘Kinase-Substrate Links.csv’
Namespace in Imports field not imported from: ‘RUnit’
  All declared Imports should be used.
checkRd: (-1) GenSyntheticLogistic.Rd:46: Lost braces; missing escapes or markup?
    46 | 3) Every coordinate yi of the outcome vector y exists in {-1, 1}^n is sampled 
       |                                                          ^
checkRd: (-1) L0Learn-package.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) L0Learn-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) CreateDataSet.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CreateDataSet.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CreateDataSet.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindElement.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindElement.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindNbrClusters.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindNbrClusters.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindStructure.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) FindStructure.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) l1_spectralclustering.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) l1_spectralclustering.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) l1_spectralclustering.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) l1_spectralclustering.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict.l2boost.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
Namespace in Imports field not imported from: ‘robustbase’
  All declared Imports should be used.
checkRd: (-1) reconcile.Rd:26: Lost braces
    26 | refer to as the sQuote{comm} data.frame.  The other data.frame contains all the
       |                       ^
Undeclared package ‘fso’ in Rd xrefs
Unknown package ‘optpart’ in Rd xrefs
File ‘labdsv/libs/labdsv.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_base_data_frame.R’ ‘as_base_data_frame2.R’
    ‘as_labeled_data_frame.R’ ‘irregular2.R’
checkRd: (-1) ln_quantile_value.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ln_quantile_value.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
Found the following files/directories:
  ‘MYSLID.csv’ ‘tabelle.csv’
Namespace in Imports field not imported from: ‘stringr’
  All declared Imports should be used.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_gaps_perc.Rd’ ‘get_cbh_metrics.Rd’ ‘get_cum_break.Rd’
    ‘get_depths.Rd’ ‘get_distance.Rd’ ‘get_effective_gap.Rd’
    ‘get_gaps_fbhs.Rd’ ‘get_layers_lad.Rd’ ‘get_real_depths.Rd’
    ‘get_real_fbh.Rd’
checkRd: (-1) conn.Rd:300: Lost braces
   300 | Soranno et al. (2017) \doi{10.1093/gigascience/gix101}{Gigascience 6:12}
       |                                                       ^
checkRd: (-1) lakes_limno.Rd:36: Lost braces
    36 | Soranno et al. (2017) \doi{10.1093/gigascience/gix101}{Gigascience 6:12}
       |                                                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘NDVI2LAI.R’
Namespaces in Imports field not imported from:
  ‘bslib’ ‘ggplot2’ ‘shinydashboard’
  All declared Imports should be used.
checkRd: (-1) lambda.r-package.Rd:71-74: Lost braces
    71 | x \%g\% y \%:=\% {
       |                  ^
checkRd: (-1) GenerateData.Rd:35-36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) GenerateData.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) landmix.estimator.Rd:59-65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) landmix.estimator.Rd:67-74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DOS.Rd:34: Lost braces; missing escapes or markup?
    34 |         Band-specific sensor $G_{rescale}$ (gain). Require either gain and offset or Grescale and Brescale to convert DN to radiance.
       |                                 ^
checkRd: (-1) DOS.Rd:37: Lost braces; missing escapes or markup?
    37 |         Band-specific sensor $B_{rescale}$ (bias). Require either gain and offset or Grescale and Brescale to convert DN to radiance.
       |                                 ^
checkRd: (-1) LML.Rd:43: Lost braces
    43 |     is specified only with the \code{GD}, code{HME}, or \code{NSIS}
       |                                               ^
checkRd: (-1) LaplaceApproximation.Rd:485: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:115: Escaped LaTeX specials: \&
checkRd: (-1) LossMatrix.Rd:117: Escaped LaTeX specials: \&
checkRd: (-1) MISS.Rd:106: Lost braces
   106 |   code{Fit$Imp}. In the presence of numerous missing values, say more
       |       ^
checkRd: (-1) Matrices.Rd:316: Lost braces
   316 |   Gauss-Hermite quadrature rules. A grid of order eqn{K} provides an
       |                                                      ^
checkRd: (-1) PMC.Rd:214: Lost braces
   214 |   item{nu}{This is the degrees of freedom parameter \eqn{\nu}{nu} for
       |       ^
checkRd: (-1) PMC.Rd:214-215: Lost braces
   214 |   item{nu}{This is the degrees of freedom parameter \eqn{\nu}{nu} for
       |           ^
checkRd: (-1) caterpillar.plot.Rd:15: Lost braces
    15 |     code{demonoid.hpc}, \code{iterquad}, \code{laplace}, \code{pmc},
       |         ^
Specified C++11: please drop specification unless essential
File ‘LassoNet/libs/LassoNet.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘main.R’ ‘operators.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘00methods.R’ ‘creg_datalist.R’ ‘creg_input.R’ ‘creg_partable.R’
    ‘creg_startvals.r’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘contr.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lay.Rd’
Specified C++11: please drop specification unless essential
Namespace in Imports field not imported from: ‘R6’
  All declared Imports should be used.
File ‘lazyeval/libs/lazyeval.so’:
  Found non-API calls to R: ‘PRENV’, ‘R_PromiseExpr’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
File ‘lazy/libs/lazy.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Namespace in Imports field not imported from: ‘doParallel’
  All declared Imports should be used.
Namespace in Imports field not imported from: ‘cli’
  All declared Imports should be used.
checkRd: (-1) TS_diagnostics_plot.Rd:19: Lost braces
    19 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
       |                                                        ^
checkRd: (-1) plot.TS_fit.Rd:29: Lost braces
    29 | \item{interactive}{\code{logical} input, should be code{TRUE} unless
       |                                                        ^
Namespaces in Imports field not imported from:
  ‘devtools’ ‘reticulate’ ‘tensorflow’
  All declared Imports should be used.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘legendSymbols.Rd’
checkRd: (-1) dynamicMapLayerOptions.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{layerDefs}{A string representing a query to run against the service before the image is rendered. This can be a string like "3:STATE_NAME="Kansas"" or an object mapping different queries to specific layers {3:"STATE_NAME="Kansas"", 2:"POP2007>25000"}.}
       |                                                                                                                                                                                                                     ^
checkRd: (-1) featureLayerOptions.Rd:35: Lost braces; missing escapes or markup?
    35 | Can be an object like {start:"startTime", end:"endTime"} or a string like "created".}
       |                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘addCityShape.Rd’ ‘addProvinceShape.Rd’ ‘areaCalculator.R’
Namespaces in Imports field not imported from:
  ‘dplyr’ ‘htmlwidgets’ ‘jsonlite’ ‘sf’
  All declared Imports should be used.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    light.interception.voxels() - This function create the Fraction absorbed incident light
    light.interception.raster() - Create a raster of Fraction absorbed incident light
    light.incident.voxels() - This function create the Fraction incident light
    light.incident.raster() - Create a raster of the Fraction incident light