Error(s) in re-building vignettes:
--- re-building ‘genetic_graph_2.Rmd’ using rmarkdown
--- finished re-building ‘genetic_graph_2.Rmd’

--- re-building ‘graph_comparisons_4.Rmd’ using rmarkdown
--- finished re-building ‘graph_comparisons_4.Rmd’

--- re-building ‘input_data_processing_1.Rmd’ using rmarkdown

Quitting from input_data_processing_1.Rmd:262-274 [unnamed-chunk-16]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/data/gannet/ripley/R/test-clang/terra/libs/terra.so':
  libhdf5.so.200: cannot open shared object file: No such file or directory
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   ├─base::namespaceImport(...)
 3.   └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
 4.     └─base::library.dynam(lib, package, package.lib)
 5.       └─base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'input_data_processing_1.Rmd' failed with diagnostics:
unable to load shared object '/data/gannet/ripley/R/test-clang/terra/libs/terra.so':
  libhdf5.so.200: cannot open shared object file: No such file or directory
--- failed re-building ‘input_data_processing_1.Rmd’

--- re-building ‘landscape_graph_3.Rmd’ using rmarkdown
Failed with error:  'unable to load shared object '/data/gannet/ripley/R/test-clang/terra/libs/terra.so':
  libhdf5.so.200: cannot open shared object file: No such file or directory'

Quitting from landscape_graph_3.Rmd:116-134 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.requirePackage()`:
! unable to load required package 'raster'
---
Backtrace:
    ▆
 1. └─methods::as(rast, "SpatialPixelsDataFrame")
 2.   └─methods::.classEnv(thisClass, mustFind = FALSE)
 3.     └─methods:::.requirePackage(package)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'landscape_graph_3.Rmd' failed with diagnostics:
unable to load required package 'raster'
--- failed re-building ‘landscape_graph_3.Rmd’

SUMMARY: processing the following files failed:
  ‘input_data_processing_1.Rmd’ ‘landscape_graph_3.Rmd’

Error: Vignette re-building failed.
Execution halted