checkRd: (-1) STEPCAM_ABC.Rd:19: Lost braces
    19 |   \code{rows}{ every row corresponds to a different plot or community} \cr
       |              ^
checkRd: (-1) STEPCAM_ABC.Rd:20: Lost braces
    20 |   \code{columns}{ every column corresponds to a different species.} \cr
       |                 ^
checkRd: (-1) STEPCAM_ABC.Rd:25: Lost braces
    25 |   \code{rows}{ every row corresponds to a different species} \cr
       |              ^
checkRd: (-1) STEPCAM_ABC.Rd:26: Lost braces
    26 |   \code{columns}{ the first column contains the name of the species, every consecutive column corresponds to a different trait} \cr
       |                 ^
checkRd: (-1) plotSTEPCAM.Rd:16: Lost braces
    16 |             - \code{DA}{ a vector containing the posterior distribution for the parameter dispersal assembly} \cr
       |                        ^
checkRd: (-1) plotSTEPCAM.Rd:17: Lost braces
    17 |             - \code{HF}{ a vector containing the posterior distribution for the parameter habitat filtering} \cr
       |                        ^
checkRd: (-1) plotSTEPCAM.Rd:18: Lost braces
    18 |             - \code{LS}{ a vector containing the posterior distribution for the parameter limiting similarity} \cr
       |                        ^
Maintainer: ‘Arya Ebadi <aeba3842@uni.sydney.edu.au>’

The Description field contains
  (2020) <arXiv:2011.11939>. Such setups include target-decoy competition
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Leandro A. Pereira <leandro.ap@ufu.br>’

The Description field contains
  hypothesis test. Pinto & Pereira (2021) <arXiv:2109.07978>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
stepjglm 5.123  0.012   5.569
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
analyze 3.283  0.147   6.003
Maintainer: ‘Eleni Vradi <vradi.eleni@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eleni",
                    family = "Vradi",
                    role = c("aut", "cre"),
                    email = "vradi.eleni@gmail.com")
as necessary.
checkRd: (-1) tuneParam.Rd:28: Lost braces; missing escapes or markup?
    28 | It supports the BFGS optimization method ('QN') from the optim {stats} function, the Hooke-Jeeves derivative-free
       |                                                                ^
checkRd: (-1) tuneParamCL2.Rd:28: Lost braces; missing escapes or markup?
    28 | It supports the BFGS optimization method ('QN') from the optim {stats} function, the Hooke-Jeeves derivative-free
       |                                                                ^
Maintainer: ‘Mee Young Park <meeyoung@google.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mee", "Young"),
                      family = "Park",
                      role = c("aut", "cre"),
                      email = "meeyoung@google.com"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"))
as necessary.
Maintainer: ‘Wai-ki Yip <yuser86@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wai-ki",
                      family = "Yip",
                      role = c("aut", "cre"),
                      email = "yuser86@yahoo.com"),
               person(given = "Ann",
                      family = "Lazar",
                      role = "ctb"),
               person(given = "David",
                      family = "Zahrieh",
                      role = "ctb"),
               person(given = "Chip",
                      family = "Cole",
                      role = "ctb"),
               person(given = "Ann",
                      family = "Lazar",
                      role = "ctb"),
               person(given = "Marco",
                      family = "Bonetti",
                      role = "ctb"),
               person(given = "Victoria",
                      family = "Wang",
                      role = "ctb"),
               person(given = "William",
                      family = "Barcella",
                      role = "ctb"),
               person(given = "Sergio",
                      family = "Venturini",
                      role = "ctb"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
vote 5.622  0.421   7.343
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
penalty 4.616  0.016   7.039
Maintainer: ‘Chu-Lan Michael Kao <chulankao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chao",
                      family = "Du",
                      role = "aut"),
               person(given = c("Chu-Lan", "Michael"),
                      family = "Kao",
                      role = c("aut", "cre"),
                      email = "chulankao@gmail.com"),
               person(given = "Samuel",
                      family = "Kou",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Kendro Vincent <vincent.kendro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yu-Chin",
                      family = "Hsu",
                      role = "aut"),
               person(given = "Kendro",
                      family = "Vincent",
                      role = c("aut", "cre"),
                      email = "vincent.kendro@gmail.com"))
as necessary.
Maintainer: ‘Aaron Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aaron",
                      family = "Olsen",
                      role = c("aut", "cre"),
                      email = "aarolsen@gmail.com"),
               person(given = "Annat",
                      family = "Haber",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) landmarkMatrixToList.Rd:10: Lost braces
    10 |   \item{semilandmark.pattern}{a regular expression pattern passed to \code{sub()} for identifying and grouping curve points. The default is landmark names ending in one or more numbers. To disable grouping, set to code{''}.}
       |                                                                                                                                                                                                                           ^
checkRd: (-1) docker_config_collection.Rd:11: Lost braces; missing escapes or markup?
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("config")}
       | ^
checkRd: (-1) docker_container.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_container")}
       | ^
checkRd: (-1) docker_image_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("image")}
       | ^
checkRd: (-1) docker_plugin_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("plugin")}
       | ^
checkRd: (-1) docker_service_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("service")}
       | ^
checkRd: (-1) docker_task.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_task")}
       | ^
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
example_plot 4.472  0.198   6.268
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_vcs.Rd’ ‘do_bma.R’ ‘do_bma.Rd’ ‘evaluate_models.R’
    ‘evaluate_models.Rd’ ‘gam_model_probs.R’ ‘gam_model_probs.Rd’
    ‘plot_1d_smooth.Rd’
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
do_bma 4.813  0.313   6.988
Maintainer: ‘Tomas Johannesson <tj@vedur.is>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tomas", "Johannesson", "&", "Halldor"),
                      family = "Bjornsson",
                      role = "aut"),
               person(given = c("Icelandic", "Met.", "Office;", "Gabor"),
                      family = "Grothendieck",
                      role = "aut"),
               person(given = "Tomas",
                      family = "Johannesson",
                      role = "cre",
                      email = "tj@vedur.is"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  STLK.Rd: Kest
  STLg.Rd: pcf
  as.lpp.stlpp.Rd: as.lpp, lpp
  as.stlpp.Rd: ppp, lpp, linnet
  as.tpp.stlpp.Rd: lpp, as.lpp
  density.stlpp.Rd: density.lpp, densityQuick.lpp, bw.scott.iso
  densityVoronoi.stlpp.Rd: densityVoronoi.lpp
  densityVoronoi.tpp.Rd: densityVoronoi.lpp
  methods.stlpp.Rd: as.linim
  rpoistlpp.Rd: ppp
  rthin.stlpp.Rd: rthin
  stlpp.Rd: as.ppp, lpp, linnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
stlplus 3.806  0.053    6.17
Maintainer: ‘Antonio Coppola <acoppola@alumni.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Coppola",
                      role = c("aut", "cre"),
                      email = "acoppola@alumni.harvard.edu"),
               person(given = "Margaret",
                      family = "Roberts",
                      role = "aut"),
               person(given = "Brandon",
                      family = "Stewart",
                      role = "aut"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "aut"))
as necessary.

File 'R/stmCorrViz-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
stmCorrViz 8.59  0.177  12.437
Found the following files/directories:
  ‘corrviz.html’
Maintainer: ‘Dan Zangri <dzangri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dan",
                      family = "Zangri",
                      role = c("aut", "cre"),
                      email = "dzangri@gmail.com"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "ctb"),
               person(given = "Brandon",
                      family = "Stewart",
                      role = "ctb"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘stmgui-package.Rd’:
    \keyword{ stm, shiny }
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_diag.Rd’ ‘get_effects.Rd’ ‘get_network.Rd’ ‘stm_diag.R’
    ‘stm_effects.R’ ‘stm_network.R’
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
get_diag 4.504   0.17   5.807
Maintainer: ‘Andres Villegas <andresmauriciovillegas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andres",
                      family = "Villegas",
                      role = c("aut", "cre"),
                      email = "andresmauriciovillegas@gmail.com"),
               person(given = "Pietro",
                      family = "Millossovich",
                      role = "aut",
                      email = "Pietro.Millossovich.1@city.ac.uk"),
               person(given = "Vladimir",
                      family = "Kaishev",
                      role = "aut",
                      email = "Vladimir.Kaishev.1@city.ac.uk"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: www.mortality.org
    From: man/EWMaleData.Rd
Maintainer: ‘Matthias Salvisberg <matthias.salvisberg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthias",
                    family = "Salvisberg",
                    role = c("aut", "cre"),
                    email = "matthias.salvisberg@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  labelTopics.Rd: lda
  topicLasso.Rd: glmnet, cv.glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
set_and_reps_schemes        7.723  0.062   8.857
vertical_planning_functions 5.126  0.008   5.721
progression_table           4.122  0.046   5.117
Maintainer: ‘Devin S. Johnson <devin.johnson@noaa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Devin", "S."),
                    family = "Johnson",
                    role = c("aut", "cre"),
                    email = "devin.johnson@noaa.gov")
as necessary.
Maintainer: ‘Aleš Žiberna <ales.ziberna@fdv.uni-lj.si>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stochBlockORP.Rd: genRandomPar
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Grant Humphries <grwhumphries@blackbawks.net>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Grant Humphries [aut, cre] (<https://orcid.org/0000-0001-5783-9892>), Bruno Caneco [aut], Aonghais Cook [aut], Elizabeth Masden [aut], Marine Scotland [fnd, cph], HiDef [cph], DMPstats [cph], Kelly Street [rev] (@kstreet13)’
  Authors@R: ‘Grant Humphries [aut, cre] (ORCID: <https://orcid.org/0000-0001-5783-9892>), Bruno Caneco [aut], Aonghais Cook [aut], Elizabeth Masden [aut], Marine Scotland [fnd, cph], HiDef [cph], DMPstats [cph], Kelly Street [rev] (GITHUB: @kstreet13)’
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
stoch_crm     6.258  0.076   8.701
mig_stoch_crm 3.835  0.070   5.091
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.

The Description field contains
  2016 <arXiv:1401.7020>), adaQN (adaptive quasi-Newton) (Keskar, N.S.,
  Berahas, A.S., 2016, <arXiv:1511.01169>).  Provides functions for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Functions.R’
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘stocks.Rd’:
    https://doi.org/10.7287/peerj.preprints.3188v1
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
fo_stodom 11.382  0.104  13.327
so_stodom 11.181  0.079  12.366
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sepstlppm.R’ ‘sepstppm.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  globaldiag.Rd: STIKhat, STLKinhom
  localSTLKinhom.Rd: STLKinhom, STLginhom
  localdiag.Rd: KLISTAhat
  localtest.Rd: KLISTAhat, LISTAhat
  plot.globaldiag.Rd: STLKinhom
  plot.locstppm.Rd: OS
  plot.sepstppm.Rd: OS
  plot.stlgcppm.Rd: OS
  plot.stlp.Rd: plot3D
  plot.stppm.Rd: OS
  sepstlppm.Rd: lppm
  sepstppm.Rd: ppm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
stppm 4.974  0.659   6.644
Maintainer: ‘Allen Day <allenday@allenday.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Allen",
                    family = "Day",
                    role = c("aut", "cre"),
                    email = "allenday@allenday.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Thomas Arsouze <thomas.arsouze@cirad.fr>’

The BugReports field in DESCRIPTION has
  https://github.com/umr-amap/StormR/issues/new/choose
which should likely be
  https://github.com/umr-amap/StormR/issues/new/choose/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘defStormsList.R’
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
build_proposal  7.358  0.195  12.493
srbeta_optimize 5.176  0.000   7.041
Maintainer: ‘Deniz Akdemir <deniz.akdemir.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Deniz",
                    family = "Akdemir",
                    role = c("aut", "cre"),
                    email = "deniz.akdemir.work@gmail.com")
as necessary.
Maintainer: ‘Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "I.",
                      family = "Zhbannikov",
                      role = "aut"),
               person(given = "Liang",
                      family = "He",
                      role = "aut"),
               person(given = "K.",
                      family = "Arbeev",
                      role = "aut"),
               person(given = "I.",
                      family = "Akushevich",
                      role = "aut"),
               person(given = "A.",
                      family = "Yashin.",
                      role = "aut"),
               person(given = c("Ilya", "Y."),
                      family = "Zhbannikov",
                      role = "cre",
                      email = "ilya.zhbannikov@duke.edu"))
as necessary.
Maintainer: ‘Edith Gabriel <edith.gabriel@inrae.fr>’

The BugReports field in DESCRIPTION has
  https://github.com/stpp-GitHub-community
which should likely be
  https://github.com/stpp-GitHub-community/issues
instead.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
rlgcp 3.847  0.191   6.106
Maintainer: ‘Monsuru Adepeju <monsuur2010@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Monsuru",
                    family = "Adepeju",
                    role = c("cre", "aut"),
                    email = "monsuur2010@yahoo.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/Manalytics/stppSim/issues/new/choose
which should likely be
  https://github.com/Manalytics/stppSim/issues/new/choose/issues
instead.
Maintainer: ‘Samuel Soubeyrand <samuel.soubeyrand@inra.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Soubeyrand",
                      role = "aut"),
               person(family = "S.",
                      role = "aut"),
               person(family = "Tollenaere",
                      role = "aut"),
               person(family = "C.",
                      role = "aut"),
               person(family = "Haon-Lasportes",
                      role = "aut"),
               person(family = "E.",
                      role = "aut"),
               person(family = "Laine",
                      role = "aut"),
               person(family = "A.-L.",
                      role = "aut"),
               person(given = "Samuel",
                      family = "Soubeyrand",
                      role = "cre",
                      email = "samuel.soubeyrand@inra.fr"))
as necessary.
checkRd: (-1) powderymildew.Rd:14-16: Lost braces
    14 | \code{$demographic.coord}{
       |                          ^
checkRd: (-1) powderymildew.Rd:18-20: Lost braces
    18 | \code{$genetic.coord}{
       |                      ^
checkRd: (-1) powderymildew.Rd:22-24: Lost braces
    22 | \code{$demographic.measures}{
       |                             ^
checkRd: (-1) powderymildew.Rd:26-28: Lost braces
    26 | \code{$genetic.frequencies}{
       |                            ^
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
ranking.strains 4.332   0.09   5.547
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
strand-package 5.718  0.208   8.455
Maintainer: ‘Rachael C. Aikens <rockyaikens@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jose Brito <jambrito@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jose",
                      family = "Brito",
                      role = c("aut", "cre"),
                      email = "jambrito@gmail.com"),
               person(given = "Pedro",
                      family = "Silva",
                      role = "aut"),
               person(given = "Tomas",
                      family = "Veiga",
                      role = "aut"))
as necessary.
Maintainer: ‘Miles Ott <miles_ott@alumni.brown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Miles",
                    family = "Ott",
                    role = c("aut", "cre"),
                    email = "miles_ott@alumni.brown.edu")
as necessary.
Maintainer: ‘Julian Busch <jb@quants.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julian",
                    family = "Busch",
                    role = c("aut", "cre"),
                    email = "jb@quants.ch")
as necessary.
Found the following files/directories:
  ‘myNewStrat.R’
Maintainer: ‘Michael Heath <m.heath@strath.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Heath",
                      role = c("aut", "cre"),
                      email = "m.heath@strath.ac.uk"),
               person(given = "Ian",
                      family = "Thurlbeck",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) StrathE2E2-package.Rd:70: Lost braces; missing escapes or markup?
    70 | {Basic model operations:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:79: Lost braces; missing escapes or markup?
    79 | {Parameter estimation:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:88: Lost braces; missing escapes or markup?
    88 | {Sensitivity and Monte Carlo analyses:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:98: Lost braces; missing escapes or markup?
    98 | {Compare model runs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:105: Lost braces; missing escapes or markup?
   105 | {Fishery yield analysis:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:111: Lost braces; missing escapes or markup?
   111 | {Visualize model inputs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:117: Lost braces; missing escapes or markup?
   117 | {Visualize model outputs:} \cr
       | ^
Maintainer: ‘Amr ElRafey <aelrafey@gmu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Farrokh",
                      family = "Alemi",
                      role = "aut",
                      email = "falemi@gmu.edu"),
               person(given = "Amr",
                      family = "ElRafey",
                      role = c("aut", "cre"),
                      email = "aelrafey@gmu.edu"))
as necessary.
Maintainer: ‘Thomas Jemielita <thomasjemielita@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Jemielita",
                    role = c("aut", "cre"),
                    email = "thomasjemielita@gmail.com")
as necessary.

The Description field contains
  2019 <arXiv:1912.03337>. This package is in beta and will be
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Maintainer: ‘Sebastien Wouters <wouterseb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastien",
                      family = "Wouters",
                      role = c("aut", "cre"),
                      email = "wouterseb@gmail.com"),
               person(given = c("Adam", "D."),
                      family = "Smith",
                      role = "ctb"))
as necessary.
Maintainer: ‘Xiang Zhou <xiang_zhou@fas.harvard.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xiangdong Gu <ustcgxd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiangdong",
                      family = "Gu",
                      role = c("aut", "cre"),
                      email = "ustcgxd@gmail.com"),
               person(given = "Raji",
                      family = "Balasubramanian",
                      role = "aut"))
as necessary.
Maintainer: ‘Priyanga Dilini Talagala <pritalagala@gmail.com>’

The Description field contains
  <arXiv:1908.04000> for detecting anomalies in high-dimensional data
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rainer",
                      family = "Opgen-Rhein",
                      role = "aut"),
               person(given = "Verena",
                      family = "Zuber",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Maintainer: ‘Nele Schuwirth <nele.schuwirth@eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nele",
                      family = "Schuwirth",
                      role = c("aut", "cre"),
                      email = "nele.schuwirth@eawag.ch"),
               person(given = "Peter",
                      family = "Reichert",
                      role = "aut"),
               person(given = "Mikolaj",
                      family = "Rybinski",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apportion_inverse.R’ ‘apportion_polygon.R’ ‘apportion_web.R’
    ‘prep_reach_dist.R’
Maintainer: ‘Stephen A Sefick Jr. <ssefick@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Stephen", "A"),
                    family = "Sefick Jr.",
                    role = c("aut", "cre"),
                    email = "ssefick@gmail.com")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@lyle.smu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/mhahsler/streamMOA
which should likely be
  https://github.com/mhahsler/streamMOA/issues
instead.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
DSF_Convolve 4.495  0.013   5.833
Maintainer: ‘Pablo Barbera <pablo.barbera@nyu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pablo",
                    family = "Barbera",
                    role = c("aut", "cre"),
                    email = "pablo.barbera@nyu.edu")
as necessary.
Maintainer: ‘Sebastian Henz <bastihz.dev@posteo.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ecxsys.Rd’:
    https://doi.org/10.1038/s41598-019-51645-4
  File ‘multi_tox.Rd’:
    https://doi.org/10.1186/s12302-020-00394-7
  File ‘multiple_stress.Rd’:
    https://doi.org/10.1021/acs.est.9b04293
    https://doi.org/10.1186/s12302-020-00394-7
  File ‘stressaddition-package.Rd’:
    https://doi.org/10.1038/s41598-019-51645-4
    https://doi.org/10.1186/s12302-020-00394-7
Maintainer: ‘Matt Barry <mrb@softisms.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Barry",
                    role = c("aut", "cre"),
                    email = "mrb@softisms.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Alessandro Barbiero <alessandro.barbiero@unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessandro",
                      family = "Barbiero",
                      role = c("aut", "cre"),
                      email = "alessandro.barbiero@unimi.it"),
               person(given = "Riccardo",
                      family = "Inchingolo",
                      role = "aut",
                      email = "dott.inchingolo_r@libero.it"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Tom Drake <t.drake@ed.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tom",
                    family = "Drake",
                    role = c("aut", "cre"),
                    email = "t.drake@ed.ac.uk")
as necessary.
File ‘stringfish/libs/stringfish.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘LEVELS’, ‘STDVEC_DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Alexander Hoyle <alexander@alexanderhoyle.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Hoyle",
                    role = c("aut", "cre"),
                    email = "alexander@alexanderhoyle.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  str_replace.Rd: stri_replace
  str_split.Rd: stri_split
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Bert Gunter <bgunter@comcast.net>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘strucplot.Rd’:
    \concept{
      structured plots,structured trellis plot [TRUNCATED]
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
strucplot 5.466  0.003   7.031
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘chunks_of_n.Rd’ ‘generic_stroke.R’ ‘index_plot.R’ ‘mfi_calc.R’
    ‘mfi_domains.Rd’ ‘pase_calc.R’
efpFunctional: multiple local function definitions for ‘plotProcess’
  with different formal arguments
mefp.efp: multiple local function definitions for ‘computeEmpProc’ with
  different formal arguments
Maintainer: ‘Moritz Berger <Moritz.Berger@imbie.uni-bonn.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Moritz",
                    family = "Berger",
                    role = c("aut", "cre"),
                    email = "moritz.berger@imbie.uni-bonn.de")
as necessary.
Maintainer: ‘Yifu Liu <2012johnnyliu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yifu",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "2012johnnyliu@gmail.com"),
               person(given = "Anru",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Maintainer: ‘Oskar Hansson <oskhan@ous-hf.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oskar",
                    family = "Hansson",
                    role = c("aut", "cre"),
                    email = "oskhan@ous-hf.no")
as necessary.
checkRd: (-1) calculateStatistics.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{quant}{numeric quantile to calculate {0,1}, default 0.95.}
       |                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  calculateAllele.Rd: data.table
  calculateSpike.Rd: data.table
  combine_gui.Rd: rbind.fill
  editData_gui.Rd: gdf, gtable
  ggsave_gui.Rd: ggsave
  plotDistribution_gui.Rd: geom_density
  plotGroups_gui.Rd: stat_ecdf
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
sts 8.425  0.182  14.343
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
kfold         8.890  0.041  11.137
crossvalidate 8.546  0.041  10.606
checkRd: (-1) cmss.Rd:21: Lost braces
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                        ^
checkRd: (-1) cmss.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                            ^
checkRd: (-1) cmss.Rd:21: Lost braces
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                                        ^
checkRd: (-1) cmss.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                                            ^
Conversion of ‘README.md’ failed:
Error parsing YAML metadata at "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/STV/README.md" (line 26, column 1):
YAML parse exception at line 1, column 6,
while scanning a block scalar:
did not find expected comment or line break
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
stv 6.039  0.004   7.481
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
semivariogram     7.073  0.159  11.501
spatial_snapshots 5.909  0.248  10.078
ridgeline         3.480  0.089   5.051
Author field differs from that derived from Authors@R
  Author:    ‘Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>), Lorenz Walthert [cre, aut], Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
  Authors@R: ‘Kirill Müller [aut] (ORCID: <https://orcid.org/0000-0002-1416-3412>), Lorenz Walthert [cre, aut], Indrajeet Patil [ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Maintainer: ‘Arturo Erdely <arturo.erdely@comunidad.unam.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arturo",
                    family = "Erdely",
                    role = c("aut", "cre"),
                    email = "arturo.erdely@comunidad.unam.mx")
as necessary.

File 'R/subcopem2D-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ailin",
                      family = "Fan",
                      role = "aut"),
               person(given = c("Shannon", "T."),
                      family = "Holloway",
                      role = c("aut", "cre"),
                      email = "shannon.t.holloway@gmail.com"))
as necessary.
checkRd: (-1) subdetect-package.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) subdetect-package.Rd:12: Lost braces in \itemize; meant \describe ?
Maintainer: ‘I. Manjula Schou <im.schou@yahoo.com.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("I.", "Manjula"),
                    family = "Schou",
                    role = c("aut", "cre"),
                    email = "im.schou@yahoo.com.au")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
SubgrpID 5.416  0.122   6.843
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.

File 'R/submax-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.

The Description field contains
  or subgroup-maximum method of Lee et al. (2017) <arXiv:1702.00525> does
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xinrui Shi <xinrui103@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xinrui",
                      family = "Shi",
                      role = c("aut", "cre"),
                      email = "xinrui103@163.com"),
               person(given = "Chunquan",
                      family = "Li",
                      role = "aut"),
               person(given = "Xia",
                      family = "Li",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotAnnGraph.Rd: plot.igraph
  plotGraphL.Rd: plot.igraph, layout.random
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jerome Collet <jeromepcollet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jerome",
                    family = "Collet",
                    role = c("aut", "cre"),
                    email = "jeromepcollet@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
Yen.Q3 5.656  0.132   7.732
checkRd: (-1) P3C.Rd:18: Lost braces; missing escapes or markup?
    18 |  used for this will be 1.00*10^{-PoissonThreshold}.}
       |                                ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  subspace.Rd: ggvis
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Andrew Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xudong",
                      family = "Han",
                      role = "aut"),
               person(given = "Junwei",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "hanjunwei1981@163.com"),
               person(given = "Chonghui",
                      family = "Liu",
                      role = "aut"))
as necessary.
Maintainer: ‘Scott Barlowe <sabarlowe@email.wcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Scott",
                    family = "Barlowe",
                    role = c("aut", "cre"),
                    email = "sabarlowe@email.wcu.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
breast 4.691  0.012   5.345
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "Bill.Venables@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
designGame   8.027  0.000  12.575
solve.sudoku 4.298  0.009   6.881
solveGame    3.888  0.006   6.619
emptyGame    3.411  0.002   5.190
as.sudoku    2.904  0.011   5.260
Maintainer: ‘David Brahm <brahm@alum.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Brahm",
                      role = c("aut", "cre"),
                      email = "brahm@alum.mit.edu"),
               person(given = "Greg",
                      family = "Snow",
                      role = "aut",
                      email = "Greg.Snow@intermountainmail.org"),
               person(given = c("with", "contributions", "from", "Curt"),
                      family = "Seeliger",
                      role = "aut",
                      email = "Seeliger.Curt@epamail.epa.gov"),
               person(given = "Henrik",
                      family = "Bengtsson.",
                      role = "aut",
                      email = "hb@maths.lth.se"))
as necessary.
Maintainer: ‘Dianne Cook <dicook@monash.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) fp19.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:12-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:25: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_glyph_ribbon.R’ ‘geom_glyph_ribbon.Rd’ ‘geom_glyph_segment.Rd’
    ‘theme_glyph.Rd’
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
geom_glyph_ribbon 5.735  0.422   8.489
checkRd: (-1) suggests.Rd:14: Lost braces; missing escapes or markup?
    14 | {suggests} aims to make that workflow as minimal and painless as possible,
       | ^
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
mspe_MS_LOGISTIC_JLW   6.061  0.016   8.034
mspe_MS_LOGISTIC_SUMCA 5.961  0.000   7.812
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
sumSTAAR                  4.073  0.006   6.200
gene-based_test_functions 3.791  0.044   5.892
Maintainer: ‘Ting-Huei Chen <tingstat22@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ting-Huei",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "tingstat22@gmail.com")
as necessary.
Maintainer: ‘Alexander Fischer <alexander-fischer1801@t-online.de>’

The Description field contains
  2022; <arXiv:2205.03288v1>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
demo_multiomics_analysis 8.338  0.767  10.782
plot_simData             5.385  0.277   7.053
File ‘sumR/libs/sumR.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Anna Vesely <anna.vesely@phd.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anna",
                    family = "Vesely",
                    role = c("aut", "cre"),
                    email = "anna.vesely@phd.unipd.it")
as necessary.

The Description field contains
  may be found in Vesely, Finos, and Goeman (2020) <arXiv:2102.11759>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
brainPvals 6.382  0.204   9.549
checkRd: (-1) sunburst.Rd:30: Lost braces; missing escapes or markup?
    30 | nested d3 JSON hierarchy with `{name:...,  children:[];}`.  \code{csvdata}
       |                                ^
checkRd: (-1) sunburst.Rd:88: Lost braces; missing escapes or markup?
    88 | \item{jsondata}{\code{deprecated} use data argument instead; data in nested d3 JSON hierarchy with `{name:...,  children:[];}`}
       |                                                                                                     ^
checkRd: (-1) sund2b.Rd:22: Lost braces; missing escapes or markup?
    22 | nested d3 JSON hierarchy with `{name:...,  children:[];}`.  \code{list}, \code{character},
       |                                ^
Maintainer: ‘Roel Braekers <roel.braekers@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Leen",
                      family = "Prenen",
                      role = "aut"),
               person(given = "Roel",
                      family = "Braekers",
                      role = c("aut", "cre"),
                      email = "roel.braekers@uhasselt.be"),
               person(given = "Luc",
                      family = "Duchateau",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = "aut"))
as necessary.
File ‘sundialr/libs/sundialr.so’:
  Found ‘abort’, possibly from ‘abort’ (C)
    Object: ‘../inst/lib/libsundials_core.a’
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
    Object: ‘../inst/lib/libsundials_core.a’
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘../inst/lib/libsundials_core.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Objects: ‘../inst/lib/libsundials_core.a’,
      ‘../inst/lib/libsundials_cvodes.a’,
      ‘../inst/lib/libsundials_idas.a’,
      ‘../inst/lib/libsundials_nvecserial.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
cvode 4.758  0.296   5.581
Maintainer: ‘Yuri M. Zhukov <zhukov@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yuri", "M."),
                      family = "Zhukov",
                      role = c("aut", "cre"),
                      email = "zhukov@umich.edu"),
               person(given = "Jason",
                      family = "Byers",
                      role = "aut"),
               person(given = "Marty",
                      family = "Davidson",
                      role = "aut"))
as necessary.
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcel",
                      family = "Dettling",
                      role = "aut",
                      email = "marcel.dettling@zhaw.ch"),
               person(given = "Martin",
                      family = "Maechler",
                      role = c("aut", "cre"),
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Maintainer: ‘Tatsiana Khamiakova <t.tavita@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tatsiana",
                    family = "Khamiakova",
                    role = c("aut", "cre"),
                    email = "t.tavita@gmail.com")
as necessary.
checkRd: (-1) BiclustSet-class.Rd:19: Lost braces
    19 |     \item{\code{Number}:}{code{"numeric"}, number of biclusters in the set}
       |                               ^
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
showSignificance   4.082  0.011   5.020
superbPlot.boxplot 3.561  0.014   5.048
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
supercells  8.4  0.105  10.783
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
supercompress 4.202   0.08   8.041
Maintainer: ‘Le Bao <lbaole17@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Le Bao",
                      role = c("aut", "cre"),
                      email = "lbaole17@gmail.com"),
               person(given = "Jeff",
                      family = "Gill",
                      role = "aut",
                      email = "jgill@mac.com"),
               person(given = "Tsung-han",
                      family = "Tsai",
                      role = "aut",
                      email = "thtsai@nccu.edu.tw"),
               person(given = "Jonathan",
                      family = "Rapkin",
                      role = "aut"))
as necessary.
Maintainer: ‘Minghui Wang <minghui.wang@mssm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minghui",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "minghui.wang@mssm.edu"),
               person(given = "Yongzhong",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
checkRd: (-1) plot.Rd:42: Lost braces; missing escapes or markup?
    42 |  \item{color.off}{color code; specifying the color for set(s) which are "{absent}" for an intersection.}
       |                                                                          ^
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
superheat 3.567  0.078     5.4
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
SL.biglasso 5.636  0.088   8.069
Maintainer: ‘Aaron B. Shev <abshev@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Aaron", "B."),
                    family = "Shev",
                    role = c("aut", "cre"),
                    email = "abshev@ucdavis.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mice.impute.SuperLearner.Rd: SuperLearner
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  KNNTrainer.Rd: R6Class
  LabelEncoder.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  level_pairs.Rd: tibble
  new_pairwise_tbl.Rd: tibble
  row_blank.Rd: tibble_row
  row_error.Rd: tibble_row
  row_term.Rd: tibble_row
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jean-Eudes Dazard <jean-eudes.dazard@case.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Aaron Caldwell <arcaldwell49@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ANOVA_exact.Rd: aov_car, emmeans
  emmeans_power.Rd: aov_car, emmeans
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
probability_contain 7.247    0.4   9.154
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
supmz 4.747  0.028   6.469
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Hideo Aizaki <azk-r@spa.nifty.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hideo",
                    family = "Aizaki",
                    role = c("aut", "cre"),
                    email = "azk-r@spa.nifty.com")
as necessary.
Maintainer: ‘Ethan Alt <ethanalt@live.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ethan",
                    family = "Alt",
                    role = c("aut", "cre"),
                    email = "ethanalt@live.unc.edu")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) getFittedProbs.Rd:6-8: Lost braces
     6 | getFittedValues <- function(object) {
       |                                     ^
checkRd: (-1) getFittedProbs.Rd:14-16: Lost braces
    14 | getFittedValues <- function(object) {
       |                                     ^
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
tortoise 15.708  0.055  19.026
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
surreal_text 5.617  0.586   7.416
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
mean_S_before_T_plot_scr 8.158  0.074  11.216
marginal_gof_scr_S_plot  7.966  0.054  10.061
fit_model_SurvSurv       7.548  0.018   9.828
marginal_gof_plots_scr   6.454  0.009   9.198
model_fit_measures       5.843  0.024   7.085
ICA.Sample.ContCont      4.666  0.016   6.058
Maintainer: ‘Layla Parast <parast@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Layla",
                    family = "Parast",
                    role = c("aut", "cre"),
                    email = "parast@austin.utexas.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  surrosurv.Rd: optimx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Yunro Chung <yunro.chung@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yunro",
                    family = "Chung",
                    role = c("cre", "aut"),
                    email = "yunro.chung@asu.edu")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘surrosurvROC-package.Rd’:
    \keyword{biomarkers, inverse probability weighing, [TRUNCATED]
  File ‘surrosurvROC.Rd’:
    \keyword{biomarkers, inverse probability weighing, [TRUNCATED]
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
surrosurvROC 7.862  0.054   10.11
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Tian",
                      role = "aut"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"),
               person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
surv2sample 5.089   0.04    6.34
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Joao Pinto <joao.pinto@tecnico.ulisboa.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joao",
                      family = "Pinto",
                      role = c("aut", "cre"),
                      email = "joao.pinto@tecnico.ulisboa.pt"),
               person(given = "Andre",
                      family = "Verissimo",
                      role = "aut",
                      email = "andre.verissimo@tecnico.ulisboa.pt"),
               person(given = "Alexandra",
                      family = "Carvalho",
                      role = "aut",
                      email = "alexandra.carvalho@tecnico.ulisboa.pt"),
               person(given = "Susana",
                      family = "Vinga",
                      role = "aut",
                      email = "susanavinga@tecnico.ulisboa.pt"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
survBootOutliers 7.662  0.026   9.433
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hajime",
                    family = "Uno",
                    role = c("aut", "cre"),
                    email = "huno@jimmy.harvard.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
survcompare2       16.081  0.950   8.141
survsrf_train       5.578  0.295   2.710
survsrfstack_train  5.350  0.227   2.650
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
survcorr 6.418  0.004   7.572
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
epidataCS_plot 4.26  0.062   5.374
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
apc          6.292  0.078   8.151
plot.surveil 4.114  0.036   6.038
standardize  4.061  0.057   5.706
Maintainer: ‘Guo-You Lan <jj6020770416jj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hsin-wen",
                    family = "Chang",
                    role = c("aut", "cre"),
                    email = "hwchang@stat.sinica.edu.tw")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
plot.surveycc 3.396  0.222   5.325
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
matrix_freq 4.367  0.082   6.053
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
adminInfo 4.458  0.051   5.382
Maintainer: ‘"Thomas Lumley" <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Lumley",
                      role = "aut"),
               person(given = "Peter",
                      family = "Gao",
                      role = "aut"),
               person(given = "Ben",
                      family = "Schneider",
                      role = "aut"),
               person(given = "\"Thomas",
                      family = "Lumley\"",
                      role = "cre",
                      email = "t.lumley@auckland.ac.nz"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svycoplot.Rd: xyplot
  svycoxph.Rd: coxph, predict.coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
plot.surveysd 8.044  0.337   5.571
calc.stError  7.089  0.400   4.369
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
tab_subset 4.82   0.05   6.082
Examples with CPU (user + system) or elapsed time > 5s
                                   user system elapsed
approx_near_optimal_survey_scheme 6.432  0.109   8.707
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hajime",
                      family = "Uno",
                      role = c("aut", "cre"),
                      email = "huno@jimmy.harvard.edu"),
               person(given = "Tianxi",
                      family = "Cai",
                      role = "aut"))
as necessary.
Maintainer: ‘Marta Sestelo <sestelo@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut"),
               person(given = "Marta",
                      family = "Sestelo",
                      role = c("aut", "cre"),
                      email = "sestelo@uvigo.es"),
               person(given = "Gustavo",
                      family = "Soutinho",
                      role = "aut"))
as necessary.
checkRd: (-1) tprob.Rd:138: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:139: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:140: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:141: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:142: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:143: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:145: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:146: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
markov.test 5.449  0.122   6.919
Maintainer: ‘Marcel Wiesweg <marcel.wiesweg@uk-essen.de>’

Found the following (possibly) invalid URLs:
  URL: JSTOR:2344317
    From: DESCRIPTION
    Message: Invalid URI scheme
  URL: JSTOR:2985181
    From: DESCRIPTION
    Message: Invalid URI scheme
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forest_plot.Rd: draw_label
  forest_plot_grid.Rd: plot_grid
  kaplan_meier_grid.Rd: ggsurvplot, save_pdf, marrangeGrob
  kaplan_meier_plot.Rd: ggsurvplot, save_pdf
  pluck_multivariate_analysis.Rd: coxph
  pluck_survival_analysis.Rd: survfit, survdiff, coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) coxph_mpl_dc.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{mpl_h0t}{MPL estimates of the baseline hazard for T, i.e. h_{0T}(x_i)}
       |                                                                   ^
checkRd: (-1) coxph_mpl_dc.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{mpl_h0c}{MPL estimates of the baseline hazard for C, i.e. h_{0C}(x_i)}
       |                                                                   ^
checkRd: (-1) coxph_mpl_dc.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{mpl_H0t}{MPL estimates of the baseline cumulative hazard for T, i.e. H_{0T}(x_i)}
       |                                                                              ^
checkRd: (-1) coxph_mpl_dc.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{mpl_H0c}{MPL estimates of the baseline cumulative hazard for C, i.e. H_{0c}(x_i)}
       |                                                                              ^
checkRd: (-1) coxph_mpl_dc.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{mpl_S0t}{MPL estimates of the baseline survival for T, i.e. S_{0T}(x_i)}
       |                                                                     ^
checkRd: (-1) coxph_mpl_dc.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{mpl_S0c}{MPL estimates of the baseline survival for C, i.e. S_{0C}(x_i)}
       |                                                                     ^
Maintainer: ‘Paramita Saha-Chaudhuri <paramita.sahachaudhuri.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Patrick", "J."),
                      family = "Heagerty",
                      role = "aut",
                      email = "heagerty@u.washington.edu"),
               person(given = c("packaging", "by", "Paramita"),
                      family = "Saha-Chaudhuri",
                      role = "aut",
                      email = "paramita.sahachaudhuri.work@gmail.com"),
               person(given = "Paramita",
                      family = "Saha-Chaudhuri",
                      role = "cre",
                      email = "paramita.sahachaudhuri.work@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
tunePHspline 8.295  0.014  10.727
survivalSL   4.517  0.056   6.245
Maintainer: ‘Michael Komodromos <mk1019@ic.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Komodromos",
                    role = c("aut", "cre"),
                    email = "mk1019@ic.ac.uk")
as necessary.

The Description field contains
  information see Komodromos et al. (2021) <arXiv:2112.10270>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add.R’ ‘add_alive.Rd’ ‘add_bipoc.Rd’ ‘add_castaway.Rd’
    ‘add_demogs.Rd’ ‘add_finalist.Rd’ ‘add_full_name.Rd’ ‘add_gender.Rd’
    ‘add_jury.Rd’ ‘add_lgbt.Rd’ ‘add_result.Rd’ ‘add_tribe.Rd’
    ‘add_tribe_colour.Rd’ ‘add_winner.Rd’ ‘castaway_details.Rd’
    ‘filter_alive.Rd’ ‘filter_final_n.Rd’ ‘filter_finalist.Rd’
    ‘filter_jury.Rd’ ‘filter_new_era.Rd’ ‘filter_us.Rd’ ‘filter_vs.Rd’
    ‘filter_winner.Rd’ ‘filters.R’ ‘get.R’ ‘helpers.R’
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
tribe_colours 6.048  0.039   7.008
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hongyuan",
                      family = "Cao",
                      role = "aut"),
               person(given = c("Mathew", "M."),
                      family = "Churpek",
                      role = "aut"),
               person(given = "Donglin",
                      family = "Zeng",
                      role = "aut"),
               person(given = c("Jason", "P."),
                      family = "Fine",
                      role = "aut"),
               person(given = c("Shannon", "T."),
                      family = "Holloway",
                      role = c("aut", "cre"),
                      email = "shannon.t.holloway@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘scoreFull.R’ ‘scoreHalf.R’ ‘scoreLVCF.R’ ‘scoreNVCF.R’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
lastValue 4.749  0.081   6.267
nearValue 3.204  0.000   5.203
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
IBS 5.796  0.089   7.586
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
ggsurvplot_group_by 4.727  0.000   6.094
ggsurvplot          4.580  0.032   5.919
ggsurvplot_facet    4.046  0.004   5.866
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
uc_data_transform 5.584  0.015   6.743
Maintainer: ‘Chris Dardis <christopherdardis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Dardis",
                    role = c("aut", "cre"),
                    email = "christopherdardis@gmail.com")
as necessary.
checkRd: (-1) sf.Rd:66: Lost braces; missing escapes or markup?
    66 | A {data.table} which is stored as an attribute of
       |   ^
Examples with CPU time > 2.5 times elapsed time
      user system elapsed ratio
cutp 2.192  0.112   0.871 2.645
Maintainer: ‘Marta Bofill Roig <marta.bofillroig@meduniwien.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Marta", "Bofill"),
                      family = "Roig",
                      role = c("aut", "cre"),
                      email = "marta.bofillroig@meduniwien.ac.at"),
               person(given = c("Guadalupe", "Gomez"),
                      family = "Melis",
                      role = "ctb"),
               person(given = "Yu",
                      family = "Shen",
                      role = "ctb"))
as necessary.

The Description field contains
  found in Bofill, Shen & Gómez (2021) <arXiv:2008.12887>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
vim            5.647  0.023   6.505
predict.stackG 4.883  0.020   6.157
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘censor_event.Rd’ ‘survival_class.R’
Maintainer: ‘Xuefei Jia <xuefeij.ai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xuefei",
                    family = "Jia",
                    role = c("aut", "cre"),
                    email = "xuefeij.ai@gmail.com")
as necessary.
Maintainer: ‘Kenta Yoshida <yoshida.kenta.6@gmail.com>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Maintainer: ‘Stanislas Hubeaux <stan.hubeaux@bluewin.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stanislas",
                      family = "Hubeaux",
                      role = c("aut", "cre"),
                      email = "stan.hubeaux@bluewin.ch"),
               person(given = "Kaspar",
                      family = "Rufibach",
                      role = "aut",
                      email = "kaspar.rufibach@gmail.com"))
as necessary.

The Description field contains
  <arXiv:1402.0432>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ConvertWeibull.Rd: survreg
  NormalMeanDiffCens.Rd: Surv
  ParamSampleCens.Rd: Surv
  SurvRegCens.Rd: Surv, survreg
  WeibullDiag.Rd: Surv, plot.survfit
  WeibullReg.Rd: survreg, Surv
  censorContVar.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Miki Horiguchi <horiguchimiki@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miki",
                      family = "Horiguchi",
                      role = c("aut", "cre"),
                      email = "horiguchimiki@gmail.com"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Hajime Uno <huno@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hajime",
                      family = "Uno",
                      role = c("aut", "cre"),
                      email = "huno@jimmy.harvard.edu"),
               person(given = "Lu",
                      family = "Tian",
                      role = "aut"),
               person(given = "Miki",
                      family = "Horiguchi",
                      role = "aut"),
               person(given = "Angel",
                      family = "Cronin",
                      role = "aut"),
               person(given = "Chakib",
                      family = "Battioui",
                      role = "aut"),
               person(given = "James",
                      family = "Bell",
                      role = "aut"))
as necessary.
Maintainer: ‘Rong Huang <roh019@ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rong",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "roh019@ucsd.edu"),
               person(given = "Ronghui",
                      family = "Xu",
                      role = "aut",
                      comment = "Lily"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
comprSensitivity 5.935  0.175   8.073
Maintainer: ‘David Moriña Soler <dmorina@ub.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alexander Sibley <dcibioinformatics@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kouros",
                      family = "Owzar",
                      role = "aut"),
               person(given = "Zhiguo",
                      family = "Li",
                      role = "aut"),
               person(given = "Nancy",
                      family = "Cox",
                      role = "aut"),
               person(given = "Sin-Ho",
                      family = "Jung",
                      role = "aut"),
               person(given = "Chanhee",
                      family = "Yi",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Sibley",
                      role = "cre",
                      email = "dcibioinformatics@duke.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhuowei Sun <sunzw21@mails.jlu.edu.cn>’

The Description field contains
  <arXiv:2310.15877> and Sun, D. et al. (2023) <arXiv:2308.15549>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
tv.co.Cox 4.917  1.194   7.542
add.haz   3.483  0.482   5.787
Maintainer: ‘Lior Rennert <liorr@clemson.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lior",
                      family = "Rennert",
                      role = c("aut", "cre"),
                      email = "liorr@clemson.edu"),
               person(given = "Yidan",
                      family = "Shi",
                      role = "aut",
                      email = "yidan.shi@pennmedicine.upenn.edu"))
as necessary.
checkRd: (-1) coxDT.Rd:76: Lost braces; missing escapes or markup?
    76 | The estimation procedure here is performed using coxph {survival} and inserting these estimated
       |                                                        ^
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
kriging_rss 4.107  0.086   5.084
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘suso_gql_helpers.R’ ‘suso_gql_uploadMap.R’
Maintainer: ‘Carlos Cinelli <carloscinelli@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Cinelli",
                    role = c("aut", "cre"),
                    email = "carloscinelli@hotmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/carloscinelli/sValues
which should likely be
  https://github.com/carloscinelli/sValues/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.sValues.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
plot.sValues 4.808   0.06   6.286
sValues      4.239   0.15   6.008
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stability.Rd: VAR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svDialogstcltk-package.Rd: dlg_message, dlg_input, dlg_list,
    dlg_open, dlg_save, dlg_dir
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Aaron M Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aaron", "M"),
                      family = "Olsen",
                      role = c("aut", "cre"),
                      email = "aarolsen@gmail.com"),
               person(given = c("Alejandro", "J"),
                      family = "Romero",
                      role = "aut"))
as necessary.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘createSyntaxFile.Rd’:
    \concept{ Syntax highlighting, code coloring }
  File ‘guiDDEInstall.Rd’:
    \concept{ Interprocess DDE communication, call tip [TRUNCATED]
  File ‘svIDE-package.Rd’:
    \concept{ GUI API IDE and code editor, language sy [TRUNCATED]
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
svine 5.904  0.444   9.175
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) koInstall.Rd:24: Lost braces; missing escapes or markup?
    24 | set, svKomodo loads {svSocket}, starts the socket server listening to the
       |                     ^
checkRd: (-1) svKomodo-package.Rd:18: Lost braces; missing escapes or markup?
    18 | Komodo and (2) the present {svKomodo} R package that work hand in hand to
       |                            ^
checkRd: (-1) svKomodo-package.Rd:28: Lost braces; missing escapes or markup?
    28 | Nevertheless, the SciViews-K Komodo addin and the {svKomodo} R package
       |                                                   ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                          ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                                         ^
checkRd: (-1) svKomodo-package.Rd:37: Lost braces; missing escapes or markup?
    37 | Both SciViews-K and {svKomodo} should be considered archived items. I keep
       |                     ^
Maintainer: ‘Trevor Hastie <hastie@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Trevor",
                    family = "Hastie",
                    role = c("aut", "cre"),
                    email = "hastie@stanford.edu")
as necessary.
Maintainer: ‘Damien Challet <damien.challet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damien",
                    family = "Challet",
                    role = c("aut", "cre"),
                    email = "damien.challet@gmail.com")
as necessary.
Maintainer: ‘Uditha Amarananda Wijesuriya <u.wijesuriya@usi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Uditha", "Amarananda"),
                    family = "Wijesuriya",
                    role = c("aut", "cre"),
                    email = "u.wijesuriya@usi.edu")
as necessary.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘bibRNews.Rd’:
    \concept{ BibTeX bibliography, R News }
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
svyvif 4.746  1.059    6.67
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

The Description field contains
  likelihood, as described in Lumley & Huang (2023) <arXiv:2311.13048>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
boot2lme    9.987  0.277  12.967
milk_subset 6.739  0.132   9.296
Maintainer: ‘Mithat Gonen <gonenm@mskcc.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
svycox.validate 4.832  0.133   6.484
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
corrected.wauc 7.757   0.34  10.237
wroc.plot      3.957   0.00   5.546
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svy_vglm.Rd: vglm, svydesign, svrepdesign
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
svy_vglm 4.226  0.031    5.94
checkRd: (-1) eff_n.Rd:32: Lost braces; missing escapes or markup?
    32 | \code{\link[survey:surveysummary]{survey::svymean()}} and related functions from the {survey}
       |                                                                                      ^
Maintainer: ‘Martin Lauss <martin.lauss@med.lu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Martin",
                    family = "Lauss",
                    role = c("aut", "cre"),
                    email = "martin.lauss@med.lu.se")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
swamp-package 4.436   0.02   5.549
Maintainer: ‘Xingye Qiao <qiao@math.binghamton.edu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘swa.Rd’:
    \keyword{classification,}
    \keyword{selection,}
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
compare_countries 12.516  0.149  15.688
Maintainer: ‘Jim Hughes <jphughes@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Hughes",
                      role = c("aut", "cre"),
                      email = "jphughes@uw.edu"),
               person(given = c("Navneet", "R."),
                      family = "Hakhu",
                      role = "aut"),
               person(given = "Emily",
                      family = "Voldal",
                      role = "aut"),
               person(given = "Fan",
                      family = "Xia",
                      role = "aut"))
as necessary.
checkRd: (-1) swDsn.Rd:28: Lost braces
    28 | numeric (scalar or vector): Relative treatment effect upon crossing over from control. Note that this is not the treatment effect (the treatment effect is specified in the call to other functions such as \code{swPwr} or \code{swSim})!  If \code{tx.effect.frac} is set to a scalar with value of 1, the standard SW CRT treatment effect will be presumed. If code{tx.effect.frac} is set to a scalar with a fractional value between 0 and 1, then only the first time point upon crossing over from control will have fractional relative treatment effect; the remaining exposure times will have a relative treatment effect of 1. If a vector of fractional treatment effect is specified, each element of the vector corresponds to the (fractional) treatment effect upon crossing over from control; if the length of the vector is less than total number of exposure times, the remaining time points will have a relative treatment effect value of 1; if the length of the vector is greater than total number of time points after crossing over, not all elements of \code{tx.effect.frac} will be used. The default value is (scalar) 1.
       |                                                                                                                                                                                                                                                                                                                                                                        ^
Maintainer: ‘Chung-hong Chan <chainsawtiney@gmail.com>’

The Description field contains
  (Mazini et al., 2019) <arXiv:1904.04047>, SemAxis (An et al., 2018)
  <arXiv:1806.05521>, Relative Negative Sentiment Bias (Sweeney &
  Test (Dev & Phillips, 2019) <arXiv:1901.07656>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sw_sweep.Rd: tk_make_future_timeseries
  tidiers_bats.Rd: bats, tbats
  tidiers_ets.Rd: ets
  tidiers_nnetar.Rd: nnetar
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mans Magnusson <mons.magnusson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mans",
                      family = "Magnusson",
                      role = c("aut", "cre"),
                      email = "mons.magnusson@gmail.com"),
               person(given = "Erik",
                      family = "Bulow",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
das_effort       4.527  0.050   5.052
das_chop_section 4.448  0.048   5.853
Maintainer: ‘Juan Xiong <jxiong@szu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juan",
                      family = "Xiong",
                      role = c("aut", "cre"),
                      email = "jxiong@szu.edu.cn"),
               person(given = c("Grace", "Y."),
                      family = "Yi",
                      role = "aut",
                      email = "yyi@uwaterloo.ca"))
as necessary.
Maintainer: ‘Jessica Weiss <jessica.weiss@uhnresearch.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jessica",
                      family = "Weiss",
                      role = c("aut", "cre"),
                      email = "jessica.weiss@uhnresearch.ca"),
               person(given = "Wei",
                      family = "Xu",
                      role = "aut",
                      email = "Wei.Xu@uhnresearch.ca"))
as necessary.
Maintainer: ‘Silvana M. Pesenti <swimpackage@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Additional functions and data sets
    Amendments to functions
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
AirQual 4.46  0.019   5.274
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    pre-release switchboard (2020 - 2021)
Maintainer: ‘Gabriel Becker <gabembecker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriel",
                    family = "Becker",
                    role = c("aut", "cre"),
                    email = "gabembecker@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  import_local_nut.Rd: rem_reps, all_params, all_params_dtrng,
    single_param
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
seasonal_dot              9.615  0.132  12.464
threshold_percentile_plot 6.192  0.115   7.506
sk_seasonal               4.480  0.075   5.545
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
plot_summary 6.256  0.161   8.457
plot_quants  5.289  0.040   6.432
Maintainer: ‘Josef Fruehwald <jofrhwld@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josef",
                    family = "Fruehwald",
                    role = c("aut", "cre"),
                    email = "jofrhwld@gmail.com")
as necessary.
checkRd: (-1) hyph.support.en.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hyph.support.en.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Vinicius Quintas Souto Maior <vinicius@de.ufpe.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vinicius", "Quintas", "Souto"),
                      family = "Maior",
                      role = c("aut", "cre", "cph"),
                      email = "vinicius@de.ufpe.br"),
               person(given = c("Francisco", "Jose", "A"),
                      family = "Cysneiros",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘elliptical.ts.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
  File ‘influence.Rd’:
    https://doi.org/10.1080/03610929308831105
    https://doi.org/10.2307/3109764
    https://doi.org/10.1198/073500104000000217
  File ‘predict.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
  File ‘sym.arma-package.Rd’:
    https://doi.org/10.1007/s00362-016-0753-z
checkRd: (-1) elliptical.ts.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{epsilon}{positive convergence tolerance \emph{e}; the iterations converge when |fit - fit_{old}|/|fit| < \emph{e}. Default is \emph{e=1e-04}.}
       |                                                                                                   ^
Maintainer: ‘Andrzej Dudek <andrzej.dudek@ue.wroc.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrzej",
                      family = "Dudek",
                      role = c("aut", "cre"),
                      email = "andrzej.dudek@ue.wroc.pl"),
               person(given = "Marcin",
                      family = "Pelka",
                      role = "aut",
                      email = "marcin.pelka@ue.wroc.pl"),
               person(given = "Justyna",
                      family = "Wilk",
                      role = "aut",
                      email = "justyna.wilk@ue.wroc.pl",
                      comment = "to 2017-09-20"),
               person(given = "Marek",
                      family = "Walesiak",
                      role = "aut",
                      email = "Marek.Walesiak@ue.wroc.pl",
                      comment = "from 2018-02-01"))
as necessary.
Maintainer: ‘Alexander Grueneberg <cran@agrueneberg.info>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Blagoje Ivanović <blagoje.ivanovic@matf.bg.ac.rs>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Blagoje",
                    family = "Ivanović",
                    role = c("aut", "cre"),
                    email = "blagoje.ivanovic@matf.bg.ac.rs")
as necessary.
Maintainer: ‘Kem Phillips <kemphillips@comcast.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kem",
                    family = "Phillips",
                    role = c("aut", "cre"),
                    email = "kemphillips@comcast.net")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Grabchak <mgrabcha@uncc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Grabchak",
                      role = c("aut", "cre"),
                      email = "mgrabcha@uncc.edu"),
               person(given = "Lijuan",
                      family = "Cao",
                      role = "aut",
                      email = "lcao2@uncc.edu"))
as necessary.
Maintainer: ‘Tarik C. Gouhier <tarik.gouhier@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tarik", "C."),
                    family = "Gouhier",
                    role = c("aut", "cre"),
                    email = "tarik.gouhier@gmail.com")
as necessary.
checkRd: (-1) coord2dist.Rd:14: Lost braces; missing escapes or markup?
    14 | \code{n} x 4 matrix of coordinates consisting of {lat or y, lon or x} pairs for each each site
       |                                                  ^
Maintainer: ‘Donghoh Kim <donghoh.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matlab", "original", "by", "Eugene", "Brevdo;", "R", "port", "by", "Dongik"),
                      family = "Jang",
                      role = "aut"),
               person(given = "Hee-Seok",
                      family = "Oh",
                      role = "aut"),
               person(given = "Donghoh",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "donghoh.kim@gmail.com"))
as necessary.
Maintainer: ‘Gertjan van den Burg <gertjanvandenburg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gertjan",
                    family = "van den Burg",
                    role = c("aut", "cre"),
                    email = "gertjanvandenburg@gmail.com")
as necessary.
Maintainer: ‘Vanderlei Julio Debastiani <vanderleidebastiani@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vanderlei", "Julio"),
                    family = "Debastiani",
                    role = c("aut", "cre"),
                    email = "vanderleidebastiani@yahoo.com.br")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cor.matrix.Rd: mantel, mantel.partial, procrustes
  matrix.x.Rd: gowdis
  optimal.Rd: gowdis
  permut.vector.Rd: shuffleSet
  procrustes.syncsa.Rd: procrustes
  rao.diversity.Rd: gowdis
  syncsa.Rd: gowdis, mantel, procrustes, vegdist
  var.type.Rd: gowdis
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  populations <arXiv:2106.06835>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) create_synthetic_example.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) create_synthetic_example.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) create_synthetic_example.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:12: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
lmmSynergy                 11.056  0.078  13.480
plot_SynergyLMM             8.669  0.078  10.868
APrioriPwr                  8.407  0.087  11.065
PostHocPwr                  7.964  0.039  10.033
plot_lmmSynergy             7.244  0.019   9.086
lmmModel                    6.032  0.027   7.286
logLikSubjectDisplacements  5.890  0.018   7.580
plot_ranefDiagnostics       4.929  0.012   6.985
ranefDiagnostics            4.643  0.016   5.940
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
Rcpp_modelobject-class  6.533  0.000   7.223
multipleSyn             6.366  0.015   7.283
summary.synMicro_object 3.877  0.000   5.359
Maintainer: ‘Alix Lahuec <alix.lahuec@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alix",
                    family = "Lahuec",
                    role = c("aut", "cre"),
                    email = "alix.lahuec@mail.mcgill.ca")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
draw.ideogram 4.486   0.07   5.873
Maintainer: ‘Melantha Wang <wang.melantha@gmail.com>’

The Description field contains
  control" <arXiv:2008.05693>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
plot_transaction_dataset 4.448  0.051   5.918
Maintainer: ‘Jens Hainmueller <jhain@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jens",
                      family = "Hainmueller",
                      role = c("aut", "cre"),
                      email = "jhain@stanford.edu"),
               person(given = "Alexis",
                      family = "Diamond",
                      role = "aut",
                      email = "adiamond@fas.harvard.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fn.V.Rd: ipop
  synth.Rd: ipop, optimx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
syrup 5.016  0.611   6.907
Maintainer: ‘Merlin Kopfmann <mghncd+cran@posteo.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Merlin",
                    family = "Kopfmann",
                    role = c("aut", "cre"),
                    email = "mghncd+cran@posteo.jp")
as necessary.
Maintainer: ‘Yixuan Qiu <yixuan.qiu@cos.name>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yixuan",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "yixuan.qiu@cos.name"),
               person(given = c("authors/contributors", "of", "the", "included", "fonts.", "See", "file", "AUTHORS", "for"),
                      family = "details.",
                      role = "aut"))
as necessary.
Maintainer: ‘Suraj Yerramilli <surajyerramilli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Suraj",
                      family = "Yerramilli",
                      role = c("aut", "cre"),
                      email = "surajyerramilli@gmail.com"),
               person(given = "Arun",
                      family = "Tangirala",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘test.csv’
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
Sysrecon 6.143  0.088   7.429
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arne",
                      family = "Henningsen",
                      role = c("aut", "cre"),
                      email = "arne.henningsen@gmail.com"),
               person(given = c("Jeff", "D."),
                      family = "Hamann",
                      role = "aut"))
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Thomas Hoffelder <thomas.hoffelder@boehringer-ingelheim.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffelder",
                    role = c("aut", "cre"),
                    email = "thomas.hoffelder@boehringer-ingelheim.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘T2EQ-package.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
    http://dx.doi.org/10.1177/009286159603000427
  File ‘T2EQ.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
  File ‘T2EQ.dissolution.profiles.hoffelder.Rd’:
    http://dx.doi.org/10.1177/009286159603000427
  File ‘ex_data_JoBS.Rd’:
    http://dx.doi.org/10.1080/10543406.2014.920344
Specified C++11: please drop specification unless essential
Maintainer: ‘Jesus Maria Rodriguez Rodriguez <jesusmro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jesus", "Maria", "Rodríguez"),
                      family = "Rodríguez",
                      role = "aut"),
               person(given = c("Jesus", "Maria", "Rodriguez"),
                      family = "Rodriguez",
                      role = "cre",
                      email = "jesusmro@gmail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bordear.Rd: createStyle
  escribirTabla.Rd: createStyle
  tablaxlsx.estilos.set.Rd: createStyle
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Philip C Schouten <philip.schouten@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Philip", "C"),
                    family = "Schouten",
                    role = c("aut", "cre"),
                    email = "philip.schouten@gmail.com")
as necessary.
Maintainer: ‘Alon Kipnis <kipnisal@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alon",
                    family = "Kipnis",
                    role = c("aut", "cre"),
                    email = "kipnisal@stanford.edu")
as necessary.

The Description field contains
  frequency tables described in Kipnis (2019) <arXiv:1911.01208>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tableHTML_output.Rd: uiOutput
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
textTable.xtable 6.238  0.050   7.674
plot.textTable   6.185  0.046   8.215
print.pltdTable  4.237  0.000   5.539
props-setter     3.808  0.007   5.143
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
as_kable.tablet 3.718  0.039   5.385
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
tabnet          13.698  0.227  13.749
nn_prune_head   10.898  0.522  11.932
tabnet_config    5.866  0.117   6.461
tabnet_pretrain  5.179  0.093   5.616
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.
checkRd: (-1) tabmulti.Rd:68: Lost braces
    68 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
checkRd: (-1) tabmulti.svy.Rd:67: Lost braces
    67 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘class_methods.R’ ‘convert.R’ ‘freq.R’ ‘lilypond.R’ ‘lp_render.R’
    ‘midi.R’ ‘modes.R’ ‘notes.R’ ‘plot.R’ ‘read_midi.Rd’
    ‘render_chordchart.Rd’ ‘scales.R’ ‘sf.R’ ‘snippet.R’ ‘strings.R’
    ‘transpose.R’
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
explore     5.964  0.090   9.255
get_data    4.409  0.143   6.752
export      4.338  0.111   6.315
get_area    4.300  0.064   6.019
import      4.289  0.021   6.173
metadata    4.281  0.024   5.774
reconstruct 4.280  0.004   5.394
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Matthew Peeples [ctb] (<https://orcid.org/0000-0003-4496-623X>), Ben Marwick [ctb] (<https://orcid.org/0000-0001-7879-4531>), Jean-Baptiste Fourvel [ctb] (<https://orcid.org/0000-0002-1061-4642>), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Matthew Peeples [ctb] (ORCID: <https://orcid.org/0000-0003-4496-623X>), Ben Marwick [ctb] (ORCID: <https://orcid.org/0000-0001-7879-4531>), Jean-Baptiste Fourvel [ctb] (ORCID: <https://orcid.org/0000-0002-1061-4642>), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Specified C++11: please drop specification unless essential
Maintainer: ‘Austin Nar <austin.nar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Austin",
                    family = "Nar",
                    role = c("aut", "cre"),
                    email = "austin.nar@gmail.com")
as necessary.
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |   ^
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |                      ^
Maintainer: ‘Katarina Domijan <domijank@tcd.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Katarina",
                    family = "Domijan",
                    role = c("aut", "cre"),
                    email = "domijank@tcd.ie")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Eric Brown <eb@ericebrown.com>’

The BugReports field in DESCRIPTION has
  https://github.com/ropensci/tacmagic
which should likely be
  https://github.com/ropensci/tacmagic/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xyplot.Arima.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
generate_random_matrix 12.146  0.043  15.299
launch_analysis_tad    11.462  0.300  14.688
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  zoom.Rd: print.trellis, Lattice, xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘January Weiner <january.weiner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "January",
                    family = "Weiner",
                    role = c("aut", "cre"),
                    email = "january.weiner@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  smoothPalette.Rd: brewer.pal
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Li-Hsiang Lin <llin79@gatech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Li-Hsiang",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "llin79@gatech.edu"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plott.R’ ‘read_cats_csv.R’
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
TailClassifier 8.843  0.088  12.328
Maintainer: ‘Anna Kiriliouk <anna.kiriliouk@unamur.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anna",
                    family = "Kiriliouk",
                    role = c("aut", "cre"),
                    email = "anna.kiriliouk@unamur.be")
as necessary.
Maintainer: ‘Serena Berretta <serena.berretta@ge.imati.cnr.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Serena",
                      family = "Berretta",
                      role = c("aut", "cre"),
                      email = "serena.berretta@ge.imati.cnr.it"),
               person(given = "Giorgio",
                      family = "Luciano",
                      role = c("aut", "cre")),
               person(given = c("Kristian", "Hovde"),
                      family = "Liland",
                      role = "ctb"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_lines.R’ ‘init.R’ ‘plots.R’ ‘report.R’ ‘tokenize.R’
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
summary_crop           7.481  0.036   8.827
plot_timing_atc_group  5.410  0.039   6.202
plot_timing_trajectory 4.213  0.040   5.134
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de",
                      comment = c(ORCID = "0000-0002-8226-3132")),
               person(given = "Thomas",
                      family = "Kiefer",
                      role = "aut"),
               person(given = "Margaret",
                      family = "Wu",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  IRT.threshold.Rd: IRT.irfprob
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Nanne Aben <nanne.aben@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nanne",
                    family = "Aben",
                    role = c("aut", "cre"),
                    email = "nanne.aben@gmail.com")
as necessary.
Maintainer: ‘Yongyuan Liang <charlotte9762@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yanni",
                      family = "Li",
                      role = "aut"),
               person(given = "Yongyuan",
                      family = "Liang",
                      role = c("aut", "cre"),
                      email = "charlotte9762@hotmail.com"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘TangPoemR.Rd’:
    \keyword{Tang Poems, Language Processing}
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ASTBranch.Rd: R6Class
  ASTFunction.Rd: R6Class
  ASTMultiply.Rd: R6Class
  ASTPlus.Rd: R6Class
  ASTTableFormula.Rd: R6Class
  ASTVariable.Rd: R6Class
  Parser.Rd: R6Class
  Token.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
E_VOL_AB_HmDm_HT.f 7.347  0.004   9.416
Maintainer: ‘Alexey Shipunov <dactylorhiza@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexey",
                    family = "Shipunov",
                    role = c("aut", "cre"),
                    email = "dactylorhiza@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘auth0.R’ ‘config.R’ ‘entra_id.R’ ‘google.R’ ‘utils.R’
checkRd: (-1) tapnet-package.Rd:40: Escaped LaTeX specials: \&
Maintainer: ‘Fabrizio Cipollini <cipollini.fabrizio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francesco",
                      family = "Calvori",
                      role = "aut"),
               person(given = "Fabrizio",
                      family = "Cipollini",
                      role = c("aut", "cre"),
                      email = "cipollini.fabrizio@gmail.com"),
               person(given = c("Giampiero", "M."),
                      family = "Gallo",
                      role = "aut"),
               person(given = "'gzstream'",
                      family = "authors.",
                      role = "aut"))
as necessary.
checkRd: (-1) TAQ-functions.Rd:119: Lost braces
   119 | Brownlees, C. T., and Gallo, G. M. (2006). Financial Econometric Analysis at Ultra{--}High Frequency: Data Handling Concerns, \emph{Computational Statistics and Data Analysis} \bold{51}, 2232--2245.
       |                                                                                   ^
checkRd: (-1) TAQ-package.Rd:59: Lost braces
    59 | Brownlees, C. T., and Gallo, G. M. (2006). Financial Econometric Analysis at Ultra{--}High Frequency: Data Handling Concerns, \emph{Computational Statistics and Data Analysis} \bold{51}, 2232--2245.
       |                                                                                   ^
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘alean.Rd’ ‘nondom.Rd’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
cate_link 6.188  0.146   7.526
Maintainer: ‘Zehang Li <lizehang@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zehang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lizehang@uw.edu"),
               person(given = "Tyler",
                      family = "McCormick",
                      role = "aut"),
               person(given = "Sam",
                      family = "Clark",
                      role = "aut"))
as necessary.
Maintainer: ‘Hanwen Zhang <hanwengutierrez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanwen",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hanwengutierrez@gmail.com"),
               person(given = c("Fabio", "H."),
                      family = "Nieto",
                      role = "aut"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
pie_addimages 3.929   0.21   5.475
Maintainer: ‘Yuan-De Tan <tanyuande@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yuan-De",
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "tanyuande@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘depreciation_interest.R’ ‘friction_period.R’ ‘nl_med_prices.R’
    ‘nl_pat_fam_prices.R’ ‘nl_ppp.R’ ‘nl_price_index.R’
    ‘nl_prod_oth_prices.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Tagged_table.Rd: data.table
  as.data.table.Mashed_table.Rd: as.data.table, data.table
  as_workbook.Rd: openxlsx
  cmash.Rd: data.table
  write_worksheet.Rd: openxlsx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lukas Burk <lukas@quantenbrot.de>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘parse_schema.R’
Maintainer: ‘Carl Boettiger <cboettig@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/cboettig/taxalight
which should likely be
  https://github.com/cboettig/taxalight/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as_data_frame.Rd: as_tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jacques Allard <jacques.allard@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacques",
                      family = "Allard",
                      role = c("aut", "cre"),
                      email = "jacques.allard@gmail.com"),
               person(given = "Vartan",
                      family = "Choulakian",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘TaylorRussell.Rd’
Maintainer: ‘Zhixuan Shao <shaozhixuansh@pku.edu.cn>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘sace.Rd’:
    https://doi.org/10.1093/biomet/asx034
  File ‘simulated_data.Rd’:
    https://doi.org/10.1093/biomet/asx034
Maintainer: ‘Guoli Sun <guolisun87@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guoli",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "guolisun87@gmail.com"),
               person(given = "Alex",
                      family = "Krasnitz",
                      role = "aut"))
as necessary.
Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  using the algorithms of Whidden and Matsen (2017) <arxiv:1511.07529>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Elior Rahmani <elior.rahmani@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) tca.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{C1.map}{An \code{p1} by \code{k} matrix of 0/1 values, indicating for each of the \code{p1} covariates in \code{C1} whether to consider its potential effects on the values of each of the \code{k} sources (e.g., if position \code{i,j} in \code{C1.map} is 1 then the potential effect of the \code{i}-th covariate in \code{C1} on the {j}-th source will be considered). If \code{C1.map == NULL} then effects for all covariates in \code{C1} will be considered in each of the sources. Note that \code{C1.map} is available only if \code{constrain_mu == TRUE}.}
       |                                                                                                                                                                                                                                                                                                                                                  ^
Maintainer: ‘Huaiyu Zhang <huaiyuzhang1988@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Huaiyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "huaiyuzhang1988@gmail.com"),
               person(given = "Haiyan",
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damiano",
                    family = "Fantini",
                    role = c("aut", "cre"),
                    email = "damiano.fantini@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
calculate_pvalue 4.279  0.098   5.143
tcga             4.118  0.044   5.279
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot1GS.Rd: element_text, +.gg
  plotFit.GS.Rd: +.gg
  plotMultipleGS.Rd: element_text, +.gg
  plotPat.1GS.Rd: element_text, +.gg
  plotSelect.GS.Rd: element_text, +.gg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
clc          7.692  0.117   7.326
simulate_olc 5.005  0.299   2.490
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
fmri_pval_comparison_3d 5.176  0.010   6.225
fmri_image              3.863  0.272   5.843
Maintainer: ‘Philippe Grosjean <phgrosjean@sciviews.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘tclVarFun.Rd’:
    \concept{ Tcl/Tk variables and proc, function call [TRUNCATED]
  File ‘tk2dialogs.Rd’:
    \concept{ More Tcl/Tk dialog boxes, font and color [TRUNCATED]
  File ‘tk2methods.Rd’:
    \concept{ Tcl/Tk widgets notebook, combobox, paned [TRUNCATED]
  File ‘tk2widgets.Rd’:
    \concept{ Tcl/Tk widgets notebook, combobox, paned [TRUNCATED]
  File ‘unix/tk2dde.Rd’:
    \concept{ Interprocess communication, DDE }
  File ‘unix/tk2ico.Rd’:
    \concept{ icons, windows }
  File ‘unix/tk2reg.Rd’:
    \concept{ Windows registry, keys, hives, permanent [TRUNCATED]
  File ‘windows/tk2dde.Rd’:
    \concept{ Interprocess communication, DDE }
  File ‘windows/tk2ico.Rd’:
    \concept{ icons, windows }
  File ‘windows/tk2reg.Rd’:
    \concept{ Windows registry, keys, hives, permanent [TRUNCATED]
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) windows/tk2reg.Rd:17: Escaped LaTeX specials: \_
checkRd: (-1) windows/tk2reg.Rd:18: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) windows/tk2reg.Rd:51: Escaped LaTeX specials: \_
checkRd: (-1) windows/tk2reg.Rd:52: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:53: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:57: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:58: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:60: Escaped LaTeX specials: \_
Examples with CPU time > 2.5 times elapsed time
                user system elapsed ratio
plot.DiscrFact 4.545  0.228   1.847 2.584
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                                  user system elapsed
predict_diagram_ksvm             1.668  0.060  13.333
bootstrap_persistence_thresholds 1.052  0.027   6.662
permutation_model_inference      0.683  0.034  24.757
diagram_kkmeans                  0.279  0.008   8.711
permutation_test                 0.174  0.005   5.887
diagram_ksvm                     0.165  0.013   6.333
predict_diagram_kpca             0.115  0.030   7.869
diagram_kpca                     0.141  0.000   5.104
predict_diagram_kkmeans          0.114  0.016  14.639
distance_matrix                  0.086  0.015   6.573
independence_test                0.096  0.004   8.015
gram_matrix                      0.060  0.009   5.739
Maintainer: ‘Raoul Wadhwa <raoulwadhwa@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mobius-strips.Rd’
Maintainer: ‘Guangchuang Yu <guangchuangyu@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Julien",
                      family = "Lavenus",
                      role = "aut"),
               person(given = "Mikael",
                      family = "Lucas",
                      role = "cre",
                      email = "mikael.lucas@ird.fr"))
as necessary.
File ‘tdigest/libs/tdigest.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
run_model 1.754  0.408   9.732
Maintainer: ‘Maxime Durand <duran1211@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Maxime",
                    family = "Durand",
                    role = c("aut", "cre"),
                    email = "duran1211@gmail.com")
as necessary.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Kenneth",
                      family = "Rose",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
plot_tdROC_cr 4.137  0.261   6.314
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
targetDiagram 2.637   0.09   5.046
Maintainer: ‘Wee Hao Ng <wn68@cornell.edu>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
state_sens 7.459   0.01  11.071
Maintainer: ‘Jing Hua Zhao <jinghuazhao@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Clayton",
                      role = "aut"),
               person(given = c("Jing", "Hua"),
                      family = "Zhao",
                      role = "cre",
                      email = "jinghuazhao@hotmail.com"))
as necessary.
Maintainer: ‘Greg Snow <538280@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Snow",
                    role = c("aut", "cre"),
                    email = "538280@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
simfun 6.494  0.016   9.015
Maintainer: ‘Hugo Andres Gutierrez Rojas <hagutierrezro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hugo", "Andres", "Gutierrez"),
                    family = "Rojas",
                    role = c("aut", "cre"),
                    email = "hagutierrezro@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
E.UC 5.408  0.088   7.542
Maintainer: ‘Chris Muir <cdmuir@hawaii.edu>’

Problems when reading CITATION file:
  It is recommended to use ‘given’ instead of ‘middle’.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
add_facet_labels 3.857  0.087   5.325
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
Renderer   7.632  0.382  10.826
Reporter   7.259  0.128  10.205
ReportCard 5.297  0.039   8.768
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
FilteredData 10.524  0.731   13.59
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  action_card.Rd: R6Class
  card_section.Rd: R6Class
  connector_card.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Johannes Ossberger <johannes.ossberger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johannes",
                    family = "Ossberger",
                    role = c("aut", "cre"),
                    email = "johannes.ossberger@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
superimposed_shmax 7.756  0.032   8.813
PoR_coordinates    7.652  0.068   7.768
rolling_test_dist  4.348  0.007   6.299
Maintainer: ‘Jeffrey L. Andrews <jeff.andrews@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeffrey", "L."),
                      family = "Andrews",
                      role = c("aut", "cre"),
                      email = "jeff.andrews@ubc.ca"),
               person(given = c("Jaymeson", "R."),
                      family = "Wickins",
                      role = "aut"),
               person(given = c("Nicholas", "M."),
                      family = "Boers",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Joshua Hewitt <joshua.hewitt@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "Hewitt",
                    role = c("aut", "cre"),
                    email = "joshua.hewitt@duke.edu")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) sendChatAction.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:25: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Bot.Rd: R6Class
  CallbackQueryHandler.Rd: R6Class
  CommandHandler.Rd: R6Class
  Dispatcher.Rd: R6Class
  ErrorHandler.Rd: R6Class
  Handler.Rd: R6Class
  MessageHandler.Rd: R6Class
  TelegramObject.Rd: R6Class
  Update.Rd: R6Class
  Updater.Rd: R6Class
  Webhook.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
blanking_event 10.326  0.142  13.511
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
sampleLCA 4.754  0.217   7.128
Maintainer: ‘Gabriel Henrique Oliveira Assuncao <gabrielhenryoliver@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Gabriel", "Henrique", "Oliveira"),
                    family = "Assuncao",
                    role = c("aut", "cre"),
                    email = "gabrielhenryoliver@hotmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
gg_traffic_evolution 7.249  0.127   8.694
gg_traffic_avg       5.870  0.194   7.323
Maintainer: ‘Marcos Fernández-Martínez <marcos.fernandez-martinez@uantwerpen.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcos",
                      family = "Fernández-Martínez",
                      role = c("aut", "cre"),
                      email = "marcos.fernandez-martinez@uantwerpen.be"),
               person(given = "Joan",
                      family = "Maspons",
                      role = "aut"))
as necessary.
Maintainer: ‘Christoph Sax <christoph.sax@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/christophsax/tempdisagg
which should likely be
  https://github.com/christophsax/tempdisagg/issues
instead.
Maintainer: ‘Etienne Low-Decarie <etienne.decarie@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: to_be_added
    From: man/Emiliania_huxleyi.Rd
Maintainer: ‘Siddhartha Kundu <siddhartha_kundu@aiims.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Siddhartha",
                    family = "Kundu",
                    role = c("aut", "cre"),
                    email = "siddhartha_kundu@aiims.edu")
as necessary.
Maintainer: ‘Till Massing <till.massing@uni-due.de>’

The Description field contains
  (Massing (2023) <arXiv:2303.07060>).  The following references form the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pixu Shi <pixu.shi@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pixu",
                    family = "Shi",
                    role = c("aut", "cre"),
                    email = "pixu.shi@duke.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
aggregate_feature 10.107  0.381  14.986
tempted_all        6.193  0.034   7.691
reconstruct        6.129  0.054   7.549
est_test_subject   4.175  0.059   5.368
ratio_feature      4.091  0.114   5.183
tempted            3.869  0.091   5.189
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
TendrilPerm      10.359  0.128  17.936
plot.TendrilPerm  8.767  0.070  13.167
Tendril           4.246  0.120   6.184
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
clean_dup 7.824   0.23  10.894
Maintainer: ‘K. Gerald van den Boogaart <boogaart@math.tu-freiberg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("K.", "Gerald"),
                    family = "van den Boogaart",
                    role = c("aut", "cre"),
                    email = "boogaart@uni-greifswald.de")
as necessary.
Maintainer: ‘Suleiman A Khan <khan.suleiman@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
ggtladleplot 4.845  0.145   5.820
ggtaugplot   4.423  0.289   5.142
tPCAaug      3.971  0.300   5.589
tPCAladle    3.894  0.010   5.578
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  parse_arguments.Rd: yaml.load
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Weilin Chen <w.chen56@lse.ac.uk>’

The Description field contains
  projected data.  See Chen and Lam (2023) <arXiv:2208.04012> for more
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
iter_proj 4.384  0.012   5.072
Maintainer: ‘Jonathan Rougier <j.c.rougier@bristol.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Rougier",
                    role = c("aut", "cre"),
                    email = "j.c.rougier@bristol.ac.uk")
as necessary.

The Date field is not in ISO 8601 yyyy-mm-dd format.
Maintainer: ‘Yuchen Zeng <yzeng58@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Miaoyan",
                      family = "Wang",
                      role = "aut"),
               person(given = "Yuchen",
                      family = "Zeng",
                      role = c("aut", "cre"),
                      email = "yzeng58@wisc.edu"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
summary.tsglm 4.348  0.008   5.294
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
tLDA 11.863  0.195  16.478
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
tenAR.est 4.346  0.156   5.946
Maintainer: ‘David Gerard <gerard.1787@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Kom.Rd’:
    http://doi.org/10.1214/aos/1176344621
    http://doi.org/10.1080/01621459.1969.10501078
  File ‘amprod.Rd’:
    https://doi.org/10.1137/07070111X
  File ‘anorm_cd.Rd’:
    http://doi.org/10.1214/11-BA606
  File ‘atrans.Rd’:
    https://doi.org/10.1137/07070111X
  File ‘convert_cov.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘demean_tensor.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘equi_mcmc.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘get_equi_bayes.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘get_isvd.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘holq.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘hooi.Rd’:
    https://doi.org/10.1137/S0895479898346995
    http://doi.org/10.1137/S0895479898346995
  File ‘hosvd.Rd’:
    https://doi.org/10.1137/S0895479896305696
    http://doi.org/10.1137/S0895479896305696
  File ‘ihop.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘lrt_null_dist_dim_same.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘lrt_stat.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘mat.Rd’:
    https://doi.org/10.1137/07070111X
  File ‘mle_from_holq.Rd’:
    https://doi.org/10.1016/j.laa.2016.04.033
  File ‘multi_stein_loss.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘multi_stein_loss_cov.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘multiway_takemura.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘rmirror_wishart.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘sample_right_wishart.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘sample_sig.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
  File ‘tensr.Rd’:
    https://doi.org/10.1016/j.jmva.2015.01.020
    https://doi.org/10.1016/j.laa.2016.04.033
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
multiway_takemura      5.073  0.008   6.835
lrt_null_dist_dim_same 4.400  0.008   5.996
Maintainer: ‘M. Suzette Blanchard <sblanchard@coh.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("M.", "Suzette"),
                    family = "Blanchard",
                    role = c("aut", "cre"),
                    email = "sblanchard@coh.org")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
print.teqrOCact 5.614      0   6.625
teqrOCtox       3.835      0   5.135
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
td_tests 5.382  0.003   6.963
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
tabulate_mmrm_subgroups 4.839  0.064   6.292
g_mmrm_lsmeans          4.137  0.109   5.503
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
g_forest             9.316  0.065  12.533
g_km                 7.495  0.013  10.272
g_lineplot           6.087  0.024   8.492
analyze_vars_in_cols 5.698  0.089   8.316
response_subgroups   4.531  0.011   6.030
analyze_variables    3.477  0.066   5.956
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
ternvis-package 8.326  0.039  11.414
foot            4.342  0.101   5.714
tmap            4.254  0.008   5.577
tpalette        3.598  0.007   5.166
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘georeference_overlay.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_spatial_rgb.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) MC_CRUDE.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{lsf}{objective function with limit state function in form of function(x) {x[1]+x[2]...}}
       |                                                                                ^
checkRd: (-1) MC_IS.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{lsf}{objective function with limit state function in form of function(x) {x[1]+x[2]...}}
       |                                                                                ^
checkRd: (-1) PROB_BASEVAR-class.Rd:14: Lost braces
    14 | \item{\code{Id}}{Place in vector of objective functional expression function(x){x[id]}}
       |                                                                                ^
checkRd: (-1) PROB_DETVAR-class.Rd:14: Lost braces
    14 | \item{\code{Id}}{Place in vector of objective functional expression function(x){x[id]}}
       |                                                                                ^
checkRd: (-1) SORM.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{lsf}{objective function with limit state function in form of function(x) {x[1]+x[2]...}}
       |                                                                                ^
checkRd: (-1) SYS_LSF-class.Rd:16: Lost braces
    16 | \item{\code{func}}{prepared for objective functions like SYS_LSF$func <- function(x){return(x[1] + x[2])}}
       |                                                                                     ^
Maintainer: ‘Sebastian Hoehna <Sebastian.Hoehna@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastian",
                      family = "Hoehna",
                      role = c("aut", "cre"),
                      email = "sebastian.hoehna@gmail.com"),
               person(given = c("Michael", "R."),
                      family = "May",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cettiidae.Rd: read.tree, ape
  conifers.Rd: read.tree, ape
  mammalia.Rd: read.tree, ape
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                                   user system elapsed
tess.plot.multichain.diagnostics  5.120  0.015   5.941
tess.plot.singlechain.diagnostics 4.489  0.019   5.432
Maintainer: ‘Anya Umlauf <aumlauf@health.ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anya",
                    family = "Umlauf",
                    role = c("aut", "cre"),
                    email = "aumlauf@health.ucsd.edu")
as necessary.
Maintainer: ‘Michael C Sachs <sachsmc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "C"),
                      family = "Sachs",
                      role = c("aut", "cre"),
                      email = "sachsmc@gmail.com"),
               person(given = c("Michael", "P"),
                      family = "Fay",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) lognormConstCVCI.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lognormConstCVCI.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lognormConstCVCI.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Gannaz Irene <irene.gannaz@insa-lyon.fr>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘TestCor-package.Rd’:
    https://doi.org/10.1111/j.2517-6161.1995.tb02031.x
    https://doi.org/10.1080/01621459.2014.999157
    https://doi.org/10.1214/088342307000000113
    https://doi.org/10.1198/016214504000000539
Maintainer: ‘Violetta Dalla <vidalla@econ.uoa.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Violetta",
                      family = "Dalla",
                      role = c("aut", "cre"),
                      email = "vidalla@econ.uoa.gr"),
               person(given = "Liudas",
                      family = "Giraitis",
                      role = "aut"),
               person(given = c("Peter", "C.", "B."),
                      family = "Phillips",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  chk-defunct.Rd: dplyr_tidy_select
  expect-defunct.Rd: dplyr_tidy_select
  output_results_excel.Rd: test_dir, test_file
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Dexter Cahoy <dexter.cahoy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dexter",
                    family = "Cahoy",
                    role = c("aut", "cre"),
                    email = "dexter.cahoy@gmail.com")
as necessary.
Maintainer: ‘En-shuo Hsu <daviden1013@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeffrey", "C."),
                      family = "Miecznikowski",
                      role = "aut"),
               person(given = "En-shuo",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "daviden1013@gmail.com"),
               person(given = "Yanhua",
                      family = "Chen",
                      role = "aut"),
               person(given = "Albert",
                      family = "Vexler",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
testforDEP 7.903  0.107  11.518
Maintainer: ‘Kathrin Moellenhoff <kathrin.moellenhoff@rub.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kathrin",
                    family = "Moellenhoff",
                    role = c("aut", "cre"),
                    email = "kathrin.moellenhoff@rub.de")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘bootstrap_test.Rd’:
    https://doi.org/10.1080/01621459.2017.1281813
Maintainer: ‘Manel Salamero <manelsalamero@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Manel",
                    family = "Salamero",
                    role = c("aut", "cre"),
                    email = "manelsalamero@gmail.com")
as necessary.
Maintainer: ‘Collin Erickson <collinberickson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Collin",
                    family = "Erickson",
                    role = c("aut", "cre"),
                    email = "collinberickson@gmail.com")
as necessary.
File ‘testthat/libs/testthat.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘FORMALS’, ‘SET_BODY’,
    ‘SET_CLOENV’, ‘SET_FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Paul R. Rosenbaum <rosenbaum@wharton.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Paul", "R."),
                    family = "Rosenbaum",
                    role = c("aut", "cre"),
                    email = "rosenbaum@wharton.upenn.edu")
as necessary.
Maintainer: ‘vincent guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "vincent",
                    family = "guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Maintainer: ‘Juan Domingo Gonzalez <juanrst@hotmail.com>’

The Description field contains
  objects of arbitrary geometries. arXiv preprint <arXiv:2312.16721>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) permucycle.Rd:37: Lost braces; missing escapes or markup?
    37 |  {The 2 in the first row means there are two cycles;}
       |  ^
checkRd: (-1) permucycle.Rd:38: Lost braces; missing escapes or markup?
    38 |   {The second row means there is a cycle of length 2, with members  (1,3);}
       |   ^
checkRd: (-1) permucycle.Rd:39: Lost braces; missing escapes or markup?
    39 |  {The third row means  there is a cycle of length 1, with member  (2);}
       |  ^
checkRd: (-1) permucycle.Rd:40: Lost braces; missing escapes or markup?
    40 |  {The fourth row is redundant for this specific case.}
       |  ^
checkRd: (-1) permucycle.Rd:41: Lost braces; missing escapes or markup?
    41 |  {One can read from the output of permucycle() to obtain cycle notation (13)(2) of the permutation, and other information.}
       |  ^
Maintainer: ‘Alejandro Gonzalez Recuenco <alejandrogonzalezrecuenco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alejandro", "Gonzalez"),
                    family = "Recuenco",
                    role = c("aut", "cre"),
                    email = "alejandrogonzalezrecuenco@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
texmex-package 3.811  0.055   5.381
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tex_preview.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dtm_builder.Rd’ ‘dtm_stopper.Rd’ ‘rancor_builder.Rd’
    ‘rancors_builder.Rd’ ‘utils-perm.R’
Maintainer: ‘Dominik S. Meier <dominikmeier@outlook.com>’

The Description field contains
  'text2sdg' package. See Wulff, Meier and Mata (2023) <arXiv:2301.11353>
  and Meier, Wulff and Mata (2021) <arXiv:2110.05856> for reference.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dominik S. Meier <dominikmeier@outlook.com>’

The Description field contains
  <arXiv:2110.05856>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_sdg.Rd: color
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tts_speak_engine.Rd: knit_engines
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BNS.Rd: R6Class
  Collocations.Rd: R6Class
  LatentDirichletAllocation.Rd: R6Class
  LatentSemanticAnalysis.Rd: R6Class
  RelaxedWordMoversDistance.Rd: R6Class
  TfIdf.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Christian Fong <christianfong@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christian",
                    family = "Fong",
                    role = c("aut", "cre"),
                    email = "christianfong@stanford.edu")
as necessary.
checkRd: (-1) infer_Z.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{nu}{Informally, the probability that the row document has the column treatment.  Formally, the parameter for the variatioanl approximation of z_{i,k}, which is a Bernoulli distribution.}
       |                                                                                                                                                         ^
checkRd: (-1) sibp.Rd:26: Lost braces
    26 | It is recommended to use link{sibp_param_search} instead of this function to search over multiple configurations of the most important parameters.  So long as only the training data is used, the analyst can freely experimient with as many parameter configurations as he likes without corrupting his causal inferences.  Once a parameter configuration is chosen, the user can then use \link{sibp_amce} on the test set to estimate the average marginal component effect (AMCE) for each treatment.}
       |                              ^
checkRd: (-1) sibp.Rd:28: Lost braces; missing escapes or markup?
    28 |   \item{nu}{Informally, the probability that the row document has the column treatment.  Formally, the parameter for the variational approximation of z_{i,k}, which is a Bernoulli distribution.}
       |                                                                                                                                                         ^
checkRd: (-1) sibp_amce.Rd:19: Lost braces
    19 |   \item{sibp.amce}{The table returned by code{sibp_amce}.}
       |                                              ^
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
get_collocations 3.696  0.195   5.526
Maintainer: ‘Patrick Reidy <patrick.francis.reidy@gmail.com>’

The URL field contains the following bad parts:
  www.praat.org
The URL field should be a list of URLs separated by commas or
whitespace.

The BugReports field in DESCRIPTION has
  https://github.com/patrickreidy/textgRid
which should likely be
  https://github.com/patrickreidy/textgRid/issues
instead.
Maintainer: ‘Anh Bui <atbui@u.northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anh",
                      family = "Bui",
                      role = c("aut", "cre"),
                      email = "atbui@u.northwestern.edu"),
               person(given = "Daniel",
                      family = "Apley",
                      role = "ths"))
as necessary.

Problems when reading CITATION file:
  It is recommended to use ‘given’ instead of ‘middle’.
Maintainer: ‘Matt Taddy <mataddy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Taddy",
                    role = c("aut", "cre"),
                    email = "mataddy@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Inverse Regression for Text Analysis <arXiv:1012.2098> and Taddy (2015,
  AoAS), Distributed Multinomial Regression, <arXiv:1311.6139>. A
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘congress109.Rd’:
    http://dx.doi.org/10.3886/ICPSR26242
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
we8there 4.288  0.015   6.917
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
FitLdaModel 4.513  0.055   5.373
Maintainer: ‘Matthieu Decorde <matthieu.decorde@ens-lyon.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sylvain",
                      family = "Loiseau",
                      role = "aut"),
               person(given = "Lise",
                      family = "Vaudor",
                      role = "aut"),
               person(given = "Matthieu",
                      family = "Decorde",
                      role = c("aut", "cre"),
                      email = "matthieu.decorde@ens-lyon.fr"),
               person(given = "Serge",
                      family = "Heiden",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nlp_build_chunks.R’ ‘sem_search_corpus.R’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘textra.R’
Maintainer: ‘Luke Miratrix <lmiratrix@stat.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luke",
                    family = "Miratrix",
                    role = c("aut", "cre"),
                    email = "lmiratrix@stat.harvard.edu")
as necessary.
checkRd: (-1) make.phrase.matrix.Rd:20: Lost braces
    20 |  \\tabular{rrrrr}{
       |           ^
checkRd: (-1) make.phrase.matrix.Rd:20-23: Lost braces
    20 |  \\tabular{rrrrr}{
       |                  ^
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘James Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Curran",
                      role = c("aut", "cre"),
                      email = "j.curran@auckland.ac.nz"),
               person(given = "TingYu",
                      family = "Huang",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  feature_columns.Rd: tidyselect
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Zheyang",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Ge Tan <ge_tan@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ge",
                    family = "Tan",
                    role = c("aut", "cre"),
                    email = "ge_tan@live.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  addDate.Rd: tfExpand
  tfplot.Rd: tfprint, tframe, tframed
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) tfd_von_mises_fisher.Rd:63: Lost braces; missing escapes or markup?
    63 | NOTE: Currently only n in {2, 3, 4, 5} are supported. For n=5 some numerical
       |                           ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  initializer_blockwise.Rd: initializer_constant
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Gilbert",
                    role = c("aut", "cre"),
                    email = "pgilbert.ttv9z@ncf.ca")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mock_tbl.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  flags.Rd: yaml.load
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) predict.tfunHDDC.Rd:31-39: Lost braces
    31 | The teigen family. Stat Comput 22:1021{1029. <doi.org/10.1007/
       |                                       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tfunHDDC.Rd: tkmeans
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Marcelino de la Cruz <marcelino.delacruz@urjc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcelino",
                      family = "de la Cruz",
                      role = c("aut", "cre"),
                      email = "marcelino.delacruz@urjc.es"),
               person(given = "Lucia",
                      family = "DeSoto",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘tgstat/libs/tgstat.so’:
  Found non-API call to R: ‘Rf_GetOption’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
CV.TGST 4.293  0.073   5.626
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  thaipdf_document.Rd: pdf_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Nicholas J. Irons <nicholasjonirons@gmail.com>’

The Description field contains
  Perrot-Dockès, Ouadah, Irons, & Raftery (2023) <arXiv:2305.08952>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) shoulders.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) shoulders.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) shoulders.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
'library' or 'require' calls not declared from:
  ‘dplyr’ ‘openxlsx’ ‘plyr’
Maintainer: ‘Glenn J. Tattersall <gtatters@brocku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Glenn", "J."),
                    family = "Tattersall",
                    role = c("aut", "cre"),
                    email = "gtatters@brocku.ca")
as necessary.
Maintainer: ‘Francisco Jablinski Castelhano <fjcastelhano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Francisco", "Jablinski", "Castelhano/Laboclima", "-", "Universidade", "Federal", "do"),
                      family = "Paraná",
                      role = "aut"),
               person(given = c("Francisco", "Jablinski"),
                      family = "Castelhano",
                      role = "cre",
                      email = "fjcastelhano@gmail.com"))
as necessary.
Maintainer: ‘Jose Gama <rxprtgama@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: www.madur.com
    From: man/RTDtemperatureFromResistance.Rd
  URI: www.betatherm.com
    From: man/ThermistorSlope.Rd
  URI: www.betatherm.com
    From: man/ThermistorSteinhartHartCoeffFromMeasurements.Rd
  URI: www.betatherm.com
    From: man/ThermistorVolumeResistivityFromR25.Rd
  URI: www.betatherm.com
    From: man/ThermistorVolumeResistivityFromRho.Rd
  URI: www.conaxbuffalo.com
    From: man/ThermocoupleLeadWireExternalResistanceUS.Rd
  URI: www.madur.com
    From: man/rtdResistivityAlpha.Rd
  URI: www.phoenixcontact.com
    From: man/thermocoupleExtensionCables.Rd
  URI: www.tempco.com
    From: man/thermocoupleWireColorUnitedStatesCanadaMexico.Rd
  URI: www.conaxbuffalo.com
    From: man/thermocoupleWireSizeResistanceImperial.Rd
Maintainer: ‘Amit Sasson <amitsasson1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Amit",
                    family = "Sasson",
                    role = c("aut", "cre"),
                    email = "amitsasson1@gmail.com")
as necessary.
Maintainer: ‘Olgun Aydin <olgun.aydin@pg.edu.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olgun",
                      family = "Aydin",
                      role = c("aut", "cre"),
                      email = "olgun.aydin@pg.edu.pl"),
               person(given = "Mustafa",
                      family = "Cavus",
                      role = "aut"))
as necessary.
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffmann",
                    role = c("aut", "cre"),
                    email = "tjhoffm@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
reconcilethief 4.144  0.312   5.252
Maintainer: ‘Holger L. Kern <hkern@fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Holger", "L."),
                    family = "Kern",
                    role = c("aut", "cre"),
                    email = "hkern@fsu.edu")
as necessary.
Maintainer: ‘Paolo Giordani <paolo.giordani@uniroma1.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maria", "Antonietta", "Del"),
                      family = "Ferraro",
                      role = "aut"),
               person(given = c("Henk", "A.L."),
                      family = "Kiers",
                      role = "aut"),
               person(given = "Paolo",
                      family = "Giordani",
                      role = c("aut", "cre"),
                      email = "paolo.giordani@uniroma1.it"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) CPdimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) CPdimensionalityplot.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) T2func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T2funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3dimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:26: Escaped LaTeX specials: \& \& \&
checkRd: (-1) TV.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) pcamean.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) threewayanova.Rd:24: Escaped LaTeX specials: \&
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md

The Description field contains
  A connector to the 'What3Words' (http://what3words.com/) service, which
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Man-Hua Chen <mchen@mail.tku.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Man-Hua",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "mchen@mail.tku.edu.tw")
as necessary.
Maintainer: ‘Tao Xiao <taoxiao1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tao",
                    family = "Xiao",
                    role = c("aut", "cre"),
                    email = "taoxiao1@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
predict.ithresh  4.150  0.010   6.090
ithresh          3.661  0.186   5.754
plot.ithreshpred 3.801  0.020   5.143
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TBinaryProtocol.Rd: R6Class
  TBinaryProtocolFactory.Rd: R6Class
  TBufferedTransport.Rd: R6Class
  TBufferedTransportFactory.Rd: R6Class
  TClient.Rd: R6Class
  TMemoryBuffer.Rd: R6Class
  TPayload.Rd: R6Class
  TServerSocket.Rd: R6Class
  TSocket.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  deprecated.Rd: quasiquotation
  formatting.Rd: tbl_format_setup
  frame_matrix.Rd: !!, !!!, quasiquotation
  lst.Rd: !!, !!!, .data, .env
  subsetting.Rd: vec_slice
  tibble.Rd: !!, !!!, .data, .env, quasiquotation
  tribble.Rd: !!, !!!, quasiquotation
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tibble/libs/tibble.so’:
  Found non-API calls to R: ‘IS_S4_OBJECT’, ‘OBJECT’, ‘SET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  guess_tspec.Rd: abort
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tibblify/libs/tibblify.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘OBJECT’, ‘PRENV’,
    ‘PRVALUE’, ‘R_PromiseExpr’, ‘Rf_allocSExp’, ‘Rf_findVarInFrame3’,
    ‘SETLENGTH’, ‘SET_BODY’, ‘SET_CLOENV’, ‘SET_FORMALS’,
    ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
ttt_qlearn 5.824  0.024     7.3
Maintainer: ‘Sergei Izrailev <sizrailev@jabiruventures.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergei",
                    family = "Izrailev",
                    role = c("aut", "cre"),
                    email = "sizrailev@jabiruventures.com")
as necessary.
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alec",
                      family = "Stephenson.",
                      role = "aut"),
               person(given = "Alec",
                      family = "Stephenson",
                      role = "cre",
                      email = "alec_stephenson@hotmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tom Cox <tom.cox@uantwerp.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tom",
                      family = "Cox",
                      role = c("aut", "cre"),
                      email = "tom.cox@uantwerp.be"),
               person(given = "Lennert",
                      family = "Schepers",
                      role = "aut",
                      email = "lennert.schepers@uantwerp.be"))
as necessary.
Maintainer: ‘Moritz Mueller-Navarra <muellernavarra@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BuildTT.Rd’:
    https://doi.org/10.5194/os-15-1363-2019
  File ‘SynTT.Rd’:
    https://doi.org/10.5194/os-15-1363-2019
  File ‘TideTable.Rd’:
    https://doi.org/10.5194/os-15-1363-2019
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
bin_cols 3.863  0.368   6.076
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
tidyboot.data.frame 6.584  0.138   8.621
tidyboot_mean       5.880  0.071   7.151
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
diagnose               7.832  0.091  10.667
model_args             6.032  0.000   7.878
evolve_gbmdl           4.426  0.004   5.605
build_gabin_population 3.846  0.016   5.335
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
gtsummary_s3_methods 4.881  0.032   6.326
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  design_gray.Rd: ggplot2
  design_grey.Rd: ggplot2
  design_lmu.Rd: ggplot2
  new_tdcmm.Rd: tibble
  visualize.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dirk",
                    family = "Eddelbuettel",
                    role = c("aut", "cre"),
                    email = "edd@debian.org")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
nearest_neighbor_adaptive 8.534  0.106  11.367
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tidy_inverse_normal.Rd: rinvgauss
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                              user system elapsed
bootstrap_density_augment    6.204  0.178   8.475
tidy_distribution_comparison 5.691  0.125   7.892
util_triangular_aic          4.716  0.008   6.565
Author field differs from that derived from Authors@R
  Author:    ‘Tyson Barrett [aut, cre] (<https://orcid.org/0000-0002-2137-1391>), Mark Fairbanks [ctb], Ivan Leung [ctb], Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
  Authors@R: ‘Tyson Barrett [aut, cre] (ORCID: <https://orcid.org/0000-0002-2137-1391>), Mark Fairbanks [ctb], Ivan Leung [ctb], Indrajeet Patil [ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
estimate_betas 6.949  0.141   8.327
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘explain_methods.R’ ‘fit.gets.R’ ‘fit.group_lasso.R’ ‘m.R’
    ‘post_process.R’
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
dot-fit.tvp      4.606  0.000   5.355
dot-fit.quantile 4.245  0.071   5.028
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘import_fst_chunked.R’ ‘pkg_load.R’ ‘round0.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘functions_chr_int.R’ ‘gate.Rd’ ‘gate_app.R’ ‘methods.R’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Initial Release (v0.1.0)
Maintainer: ‘Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "Myles"),
                    family = "McDonnell",
                    role = c("aut", "cre"),
                    email = "robertmylesmcdonnell@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iterate.Rd’ ‘random_walk_rank.Rd’
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
annotation_line-method 5.758  0.175   6.698
Maintainer: ‘Drew Dimmery <drew.dimmery@univie.ac.at>’

The Description field contains
  doubly-robust learner of Kennedy (n.d.) <arXiv:2004.14497>. You provide
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  predict.SL.glmnet.interaction.Rd: SL.glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_paras.Rd’ ‘checks.R’ ‘compute-idx.Rd’ ‘compute-indexes.R’
    ‘dimension-reduction.R’ ‘dimension-reduction.Rd’ ‘dist-fit.Rd’
    ‘distribution-fit.R’ ‘drought-idx.Rd’ ‘drought-indexes.R’ ‘init.R’
    ‘normalise.R’ ‘normalise.Rd’ ‘rescale.Rd’ ‘rescaling.R’
    ‘swap-values.R’ ‘swap.Rd’ ‘temporal-aggregate.Rd’
    ‘temporal-aggregation.R’ ‘theme_benchmark.Rd’
    ‘variable-transformation.R’ ‘variable-transformation.Rd’
'::' or ':::' imports not declared from:
  ‘here’ ‘janitor’ ‘ozmaps’ ‘readxl’ ‘rmapshaper’ ‘sf’ ‘tibble’
'library' or 'require' calls not declared from:
  ‘GGally’ ‘ozmaps’ ‘tidyverse’
checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
       |                    ^
checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
       |                                           ^
checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
       |                                                          ^
Maintainer: ‘Joshua M Rosenberg <jmrosenberg@utk.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Minor changes:
checkRd: (-1) single_imputation.Rd:21-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) single_imputation.Rd:23-27: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.mc.Rd: ggplot2
  plot.summary.mc.Rd: ggplot2
  tidy_mc_latex.Rd: kableExtra
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
plot.mc         4.308  0.085   7.756
plot.summary.mc 3.807  0.105   7.502
future_mc       2.116  0.149   6.223
summary.mc      1.846  0.088   5.023
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tidymodl.R’ ‘tidymodl.Rd’
Maintainer: ‘Michael Milton <michael.r.milton@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Milton",
                    role = c("aut", "cre"),
                    email = "michael.r.milton@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
facet_abundanceh 4.405   0.06   5.588
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tidy_plate.R’
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
add_sum_bar           7.276  0.026  10.447
split_plot            6.553  0.011   7.808
add_count_bar         5.954  0.003   8.401
add_test_pvalue       5.729  0.016   6.912
add_median_bar        5.573  0.003   7.234
add_mean_bar          5.517  0.004   7.806
adjust_legend_title   5.324  0.083   7.046
add_barstack_absolute 4.731  0.023   5.470
add_sem_ribbon        4.352  0.007   5.726
adjust_colors         4.130  0.000   5.162
reverse_x_axis_labels 4.106  0.000   5.607
save_plot             4.024  0.007   5.358
reorder_x_axis_labels 3.916  0.007   5.291
rename_x_axis_labels  3.896  0.000   5.049
add_data_labels       3.833  0.009   5.806
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘summarise2.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_msg_to_chat_history.Rd’ ‘add_text.Rd’ ‘answer_as_key_value.R’
    ‘answer_as_named_list.R’ ‘answer_as_text.R’ ‘answer_using_sql.R’
    ‘answer_using_tools.R’ ‘chat_history.R’ ‘chat_history.Rd’
    ‘construct_prompt_text.Rd’ ‘df_to_string.Rd’ ‘get_chat_history.Rd’
    ‘get_prompt_wraps.Rd’ ‘internal_extraction.R’
    ‘internal_request_llm_provider.R’ ‘internal_test_helpers.R’
    ‘is_tidyprompt.Rd’ ‘llm_provider-class.Rd’ ‘llm_providers.R’
    ‘misc_llm_verify.R’ ‘persistent_chat.R’ ‘prompt_wrap.Rd’
    ‘send_prompt.R’ ‘set_chat_history.Rd’ ‘set_system_prompt.Rd’
    ‘skim_with_labels_and_levels.Rd’ ‘tidyprompt-class.Rd’ ‘tidyprompt.R’
    ‘tidyprompt.Rd’
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
coord_x_date 3.648  0.157   5.584
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
query 3.946  0.213   5.368
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘import_instruments.R’ ‘make_choose_all_table.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  group_by.Rd: group_by_drop_default
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tidyr/libs/tidyr.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
reorder.rulelist   20.486  0.700  11.625
prune.rulelist     11.044  0.377   7.249
calculate.rulelist  6.455  0.252   3.822
augment.rulelist    5.122  0.221   3.250
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
blockcv2rsample 8.268   0.13   9.919
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
pseudo_class       12.853  0.076  12.961
lr_lmr              8.385  0.376   6.781
plot_bivariate      4.734  0.036   5.247
append_class_draws  4.571  0.034   5.062
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  formatting.Rd: tbl_format_setup
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
export_sq 4.363  0.305   6.213
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cast_sparse.Rd: sparseMatrix
  document_term_casters.Rd: sparseMatrix
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  are_true.Rd: as_logical
  categorical_test_by.Rd: map_dfr
  count_by.Rd: count
  first_non_nas_at.Rd: select
  first_which_non_na_at.Rd: select
  format_numbers_at.Rd: mutate_at
  format_p_values_at.Rd: mutate_at
  lump_rows.Rd: summarise
  order_factor_by.Rd: fct_reorder
  pluck_vector.Rd: pluck, simplify
  rename_factor.Rd: fct_recode, fct_relevel
  rename_reorder_factor.Rd: fct_recode, fct_relevel
  with_name.Rd: pluck, str_detect
  with_value_containing.Rd: pluck, str_detect
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
freq 3.662  0.047   5.277
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
solvedose_alk_once  11.567  0.031  13.788
solvedose_ph_once    7.796  0.086  10.505
chemdose_dbp_once    6.212  0.022   6.653
chemdose_toc_once    5.799  0.048  12.530
chemdose_dbp_chain   5.351  0.005   5.630
blend_waters_chain   4.777  0.051   6.328
pac_toc_once         4.493  0.079  10.165
chemdose_ph_once     4.459  0.049  10.533
balance_ions_chain   4.192  0.152  10.269
chemdose_toc_chain   4.247  0.019  10.331
blend_waters_once    3.464  0.028   5.342
chemdose_ph_chain    3.341  0.042   8.240
define_water_chain   3.319  0.035   8.123
balance_ions_once    3.248  0.091  10.217
biofilter_toc_once   3.167  0.088   9.162
dissolve_pb_once     3.155  0.035   8.588
pluck_water          2.751  0.032   7.422
pac_toc_chain        2.734  0.039   7.768
biofilter_toc_chain  2.006  0.011   7.976
define_water_once    1.667  0.022   6.569
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tw_search.R’
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Kent",
                      family = "Johnson",
                      role = "ctb",
                      email = "kjohnson@akoyabio.com"))
as necessary.
Maintainer: ‘Will Kuan <aiien61will@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Will",
                    family = "Kuan",
                    role = c("aut", "cre"),
                    email = "aiien61will@gmail.com")
as necessary.
Maintainer: ‘Siyu Han <siyu.han@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siyu",
                      family = "Han",
                      role = c("aut", "cre"),
                      email = "siyu.han@helmholtz-muenchen.de"),
               person(given = "Jialing",
                      family = "Huang",
                      role = "aut"),
               person(given = "Francesco",
                      family = "Foppiano",
                      role = "aut"),
               person(given = "Cornelia",
                      family = "Prehn",
                      role = "aut"),
               person(given = "Jerzy",
                      family = "Adamski",
                      role = "aut"),
               person(given = "Karsten",
                      family = "Suhre",
                      role = "aut"),
               person(given = "Ying",
                      family = "Li",
                      role = "aut"),
               person(given = "Giuseppe",
                      family = "Matullo",
                      role = "aut"),
               person(given = "Freimut",
                      family = "Schliess",
                      role = "aut"),
               person(given = "Christian",
                      family = "Gieger",
                      role = "aut"),
               person(given = "Annette",
                      family = "Peters",
                      role = "aut"),
               person(given = "Rui",
                      family = "Wang-Sattler",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
select_variable 3.989  0.065   5.237
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
inferGenotype         5.448  0.175   6.676
findUnmutatedCalls    5.453  0.135   6.075
inferGenotypeBayesian 5.460  0.076   6.400
reassignAlleles       4.652  0.054   5.270
Maintainer: ‘Chi Song <song.1188@osu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("George", "C."),
                      family = "Tseng",
                      role = "aut",
                      email = "ctseng@pitt.edu"),
               person(given = c("Wing", "H."),
                      family = "Wong",
                      role = "aut",
                      email = "whwong@stanford.edu"),
               person(given = "Chi",
                      family = "Song",
                      role = "cre",
                      email = "song.1188@osu.edu"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
tighten              6.342  0.097   7.590
tightenBlock-package 5.527  0.080   7.984
makematch            5.247  0.115   6.500
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
many_maps 9.976  0.169  12.503
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"),
               person(given = "Kaisey",
                      family = "Mandel",
                      role = "aut"),
               person(given = c("David", "A."),
                      family = "van Dyk",
                      role = "aut"),
               person(given = c("Vinay", "L."),
                      family = "Kashyap",
                      role = "aut"),
               person(given = "Xiao-Li",
                      family = "Meng",
                      role = "aut"),
               person(given = "Aneta",
                      family = "Siemiginowska",
                      role = "aut"),
               person(given = "Zhirui",
                      family = "Hu",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:2005.08049>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Reichert",
                    role = c("aut", "cre"),
                    email = "peter.reichert@emeriti.eawag.ch")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
infer.timedeppar 4.564  0.011     5.3
Maintainer: ‘Toshihiro Umehara <toshi@niceume.com>’

The BugReports field in DESCRIPTION has
  https://github.com/niceume/timeDF
which should likely be
  https://github.com/niceume/timeDF/issues
instead.
Maintainer: ‘Dahee Lee <dhlee99@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dahee",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "dhlee99@gmail.com"),
               person(given = "Dustin",
                      family = "Tingley",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘life_exp.Rd’:
    \keyword{durPlot,}
    \keyword{durSummary,}
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
durPlot 6.443   0.21   8.269
Maintainer: ‘Paul Blanche <paulfblanche@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Blanche",
                    role = c("aut", "cre"),
                    email = "paulfblanche@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) compare.Rd:46: Escaped LaTeX specials: \&
Maintainer: ‘Yifu Yan <yanyifu94@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yifu",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "yanyifu94@hotmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) setup_sql_functions.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Install {timeseriesdb} System Functions}
       |                ^
checkRd: (-1) setup_sql_functions.Rd:17: Lost braces; missing escapes or markup?
    17 | Installs functions needed to operated {timeseriesdb} in
       |                                       ^
checkRd: (-1) setup_sql_grant_rights.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Grant execute on {timeseriesdb} functions}
       |                         ^
checkRd: (-1) setup_sql_grant_rights.Rd:17: Lost braces; missing escapes or markup?
    17 | Grant execute on {timeseriesdb} functions
       |                  ^
checkRd: (-1) setup_sql_tables.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Install {timeseriesdb} System Tables}
       |                ^
checkRd: (-1) setup_sql_tables.Rd:17: Lost braces; missing escapes or markup?
    17 | Installs tables needed to operated {timeseriesdb} in
       |                                    ^
checkRd: (-1) setup_sql_triggers.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Install {timeseriesdb} Triggers}
       |                ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_weekly_timeslots.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_weekly_timeslots.Rd: layer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  parse_date2.Rd: anytime, anydate
  step_box_cox.Rd: selections
  step_diff.Rd: step_naomit, selections
  step_log_interval.Rd: selections
  step_ts_clean.Rd: selections
  step_ts_impute.Rd: selections
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
tk_get_holiday       4.530  0.110   5.590
plot_acf_diagnostics 4.470  0.082   5.276
plot_time_series     4.477  0.070   5.592
Examples with CPU (user + system) or elapsed time > 5s
                               user system elapsed
HypothesisTestFunctionalData 12.224  0.006  15.619
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tcor.Rd’
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
tcor          12.150  0.235  14.709
test_equality  8.744  0.062  11.008
test_ref       4.284  0.015   5.437
checkRd: (-1) alcohol.Rd:16-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) alcohol.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) alcohol.Rd:22-26: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
mat.tvbeta 5.812  0.013   8.193
Maintainer: ‘Joris Snellenburg <j.snellenburg@vu.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Masami Saga <msaga@mtb.biglobe.ne.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("The", "Institute", "of", "Statistical"),
                      family = "Mathematics",
                      role = "aut"),
               person(given = "Masami",
                      family = "Saga",
                      role = "cre",
                      email = "msaga@mtb.biglobe.ne.jp"))
as necessary.
Maintainer: ‘Josef Leydold <josef.leydold@wu.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Josef",
                      family = "Leydold",
                      role = c("aut", "cre"),
                      email = "josef.leydold@wu.ac.at"),
               person(given = "Carsten",
                      family = "Botts",
                      role = "aut"),
               person(given = "Wolfgang",
                      family = "H\\\"ormann",
                      role = "aut"))
as necessary.
checkRd: (-1) add_md.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{body}{an XML object generated via {tinkr}}
       |                                         ^
checkRd: (-1) md_ns.Rd:13: Lost braces; missing escapes or markup?
    13 | The {commonmark} package is used to translate markdown to XML, but it does
       |     ^
checkRd: (-1) md_ns.Rd:14: Lost braces; missing escapes or markup?
    14 | not assign a namespace prefix, which means that {xml2} will auto-assign a
       |                                                 ^
checkRd: (-1) stylesheet.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{The {tinkr} stylesheet}
       |            ^
checkRd: (-1) stylesheet.Rd:14: Lost braces; missing escapes or markup?
    14 | This function returns the path to the {tinkr} stylesheet
       |                                       ^
checkRd: (-1) stylesheet.Rd:11: Lost braces; missing escapes or markup?
    11 | stylesheet used by {tinkr}.
       |                    ^
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
exp_surv 7.555  0.063   8.843
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘base-lenses.R’ ‘where_il.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘type_function.Rd’
Maintainer: ‘Francois Guillem <guillem.francois@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Francois",
                    family = "Guillem",
                    role = c("aut", "cre"),
                    email = "guillem.francois@gmail.com")
as necessary.
Maintainer: ‘Camilo Khatchikian <ckhatchikian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adrien",
                      family = "Rieux",
                      role = "aut"),
               person(given = "Camilo",
                      family = "Khatchikian",
                      role = c("aut", "cre"),
                      email = "ckhatchikian@gmail.com"))
as necessary.
Specified C++14: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
create_posterior_data 5.660  0.209   6.929
oc_coverage           4.472  0.033   5.374
checkRd: (-1) partition_undirected_graph.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{cutoff}{Numeric. The value max(0, g_{i,j} - cutoff) so that there are <\code{.num_components}> components in the graph.}
       |                                           ^
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
density.summary_fitsae 3.392  0.126    5.52
Maintainer: ‘Brian Salzer <brian.m.salzer@frb.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Hallman",
                      role = "aut",
                      email = "jeffhallman@gmail.com"),
               person(given = "Brian",
                      family = "Salzer",
                      role = "cre",
                      email = "brian.m.salzer@frb.gov"))
as necessary.
checkRd: (-1) tierChart.Rd:332: Lost braces
   332 |   If the input argument code{boxes} is \code{F}, the \code{lBox},
       |                             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_taxa_ridges.Rd: scale_fill_gradient, theme_ridges,
    geom_density_ridges
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
plot_taxa_ridges 3.524  0.122   5.012
titan            1.262  0.044   5.225
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
tkimageCommands 6.824  1.183  10.209
tkImShow        3.266  0.656   7.444
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luke",
                    family = "Tierney",
                    role = c("aut", "cre"),
                    email = "luke-tierney@uiowa.edu")
as necessary.
Found an obsolete/platform-specific call in the following function:
  ‘.my.tkdev’
Found the platform-specific device:
  ‘X11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
Maintainer: ‘Filipe Campelo <fcampelo@ci.uc.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Filipe",
                    family = "Campelo",
                    role = c("aut", "cre"),
                    email = "fcampelo@ci.uc.pt")
as necessary.
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

The Description field contains
  <arXiv:2204.10739> .
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

The Description field contains
  <arXiv:2106.15559>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jasin Machkour <jasin.machkour@tu-darmstadt.de>’

The Description field contains
  Machkour, Muma, and Palomar (2022) <arXiv:2110.06048>, Efron, Hastie,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Xiang Lyu <xianglyu@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiang",
                      family = "Lyu",
                      role = c("aut", "cre"),
                      email = "xianglyu@berkeley.edu"),
               person(given = c("Will", "Wei"),
                      family = "Sun",
                      role = "aut"),
               person(given = "Zhaoran",
                      family = "Wang",
                      role = "aut"),
               person(given = "Han",
                      family = "Liu",
                      role = "aut"),
               person(given = "Jian",
                      family = "Yang",
                      role = "aut"),
               person(given = "Guang",
                      family = "Cheng",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Tlasso.fit.Rd: huge
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
Tlasso.fit 8.439  0.094  11.118
Author field differs from that derived from Authors@R
  Author:    ‘Lukas Soenning [aut, cre, cph] (<https://orcid.org/0000-0002-2705-395X>), German Research Foundation (DFG) [fnd] (018mejw64, Grant number 548274092)’
  Authors@R: ‘Lukas Soenning [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-2705-395X>), German Research Foundation (DFG) [fnd] (ROR: <https://ror.org/018mejw64>, Grant number 548274092)’
Maintainer: ‘Jona Lilienthal <lilienthal@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jona",
                    family = "Lilienthal",
                    role = c("aut", "cre"),
                    email = "lilienthal@statistik.tu-dortmund.de")
as necessary.
Specified C++14: please drop specification unless essential
checkRd: (-1) pmvn.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvn.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvn.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvt.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvt.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvt.Rd:25: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Muhammed Ali Onder <muhammedalionder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Muhammed", "Ali"),
                    family = "Onder",
                    role = c("aut", "cre"),
                    email = "muhammedalionder@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
tm_polygons 6.422  0.205   8.451
tm_crs      3.963  0.234   6.620
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
approx_areas 10.239  0.325  12.777
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kasper",
                    family = "Kristensen",
                    role = c("aut", "cre"),
                    email = "kaskr@dtu.dk")
as necessary.
Maintainer: ‘Junhui Li <junhuili@cau.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junhui",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "junhuili@cau.edu.cn")
as necessary.
Maintainer: ‘Jian Li <rweibo@sina.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jian",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "rweibo@sina.com")
as necessary.
Maintainer: ‘Andrea Capozio <andreacapozio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Capozio",
                    role = c("aut", "cre"),
                    email = "andreacapozio@gmail.com")
as necessary.
checkRd: (-1) tv_episode_changes.Rd:29: Lost braces; missing escapes or markup?
    29 | This method is used in conjunction with the /tv/{id}/changes method. This method uses the episode_id value found in the change entries.
       |                                                 ^
checkRd: (-1) tv_season_changes.Rd:29: Lost braces; missing escapes or markup?
    29 | This method is used in conjunction with the /tv/{id}/changes method. This method uses the season_id value found in the change entries.
       |                                                 ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tmle.Sl.dbarts2.Rd: SuperLearner
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
tropical.centroid.MH 8.714  0.083  11.737
trop.Volume          6.134  0.017   8.066
checkRd: (-1) pvalEffectPlot.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:93: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:94: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Stefan Theussl <Stefan.Theussl@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Cody Moore <Jumper9400@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cody",
                    family = "Moore",
                    role = c("aut", "cre"),
                    email = "jumper9400@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
summary.tm 11.539  0.015  14.064
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
gamma_bootstrapper_Ttest 6.436  0.022   7.246
kFWER_TMTI               5.675  0.004   6.414
Maintainer: ‘Samsiddhi Bhattacharjee <sb1@nibmg.ac.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Samsiddhi",
                      family = "Bhattacjarjee",
                      role = "aut",
                      email = "sb1@nibmg.ac.in"),
               person(given = "Samsiddhi",
                      family = "Bhattacharjee",
                      role = "cre",
                      email = "sb1@nibmg.ac.in"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gmm.tmvnorm.Rd: gmm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
dtmvt              6.537  0.000   7.238
dtmvnorm.marginal2 4.395  0.067   5.802
tmvnorm            4.226  0.001   6.608
'library' or 'require' call not declared from: ‘rgl’
Maintainer: ‘Kaifeng Lu <kaifenglu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kaifeng",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "kaifenglu@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Tore Opsahl <tore@opsahl.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tore",
                    family = "Opsahl",
                    role = c("aut", "cre"),
                    email = "tore@opsahl.co.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
weighted_richclub_tm 4.255  0.094   7.266
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘position_diverge.R’
Maintainer: ‘Ali Santacruz <amsantac@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Robert", "G."),
                      family = "Pontius",
                      role = "aut",
                      email = "rpontius@clarku.edu"),
               person(given = "Ali",
                      family = "Santacruz",
                      role = c("aut", "cre"),
                      email = "amsantac@unal.edu.co"),
               person(given = "Amin",
                      family = "Tayyebi",
                      role = "aut"),
               person(given = "Benoit",
                      family = "Parmentier",
                      role = "aut"),
               person(given = "Kangping",
                      family = "Si",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Get_time_entries.R’
Maintainer: ‘Sara Algeri <salgeri@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sara",
                    family = "Algeri",
                    role = c("aut", "cre"),
                    email = "salgeri@umn.edu")
as necessary.

The Description field contains
  <arXiv:1803.03858>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
EC_LRT       4.744  0.289   6.681
find_max     4.822  0.016   7.008
TOHM-package 4.651  0.081   6.278
TOHM_LRT     4.635  0.043   6.384
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kasper",
                      family = "Welbers",
                      role = c("aut", "cre"),
                      email = "kasperwelbers@gmail.com"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Lincoln Mullen <lincoln@lincolnmullen.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
mvregtolregion 4.608  0.039   5.332
Maintainer: ‘Abedrahim Ben rebia <b.abedrahim@tomba.io>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Abedrahim", "Ben"),
                      family = "rebia",
                      role = c("ctb", "aut", "cre"),
                      email = "b.abedrahim@tomba.io"),
               person(family = "Tomba.io",
                      role = c("cph", "aut")))
as necessary.
Maintainer: ‘Jens von Bergmann <jens@mountainmath.ca>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
checkRd: (-1) jsonStr.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Format data as a JSON object (like this: {"x": "120"}).}
       |                                                 ^
checkRd: (-1) jsonStr.Rd:18: Lost braces; missing escapes or markup?
    18 | Format data as a JSON object (like this: {"x": "120"}).
       |                                          ^
checkRd: (-1) fixed_width_no_modeling.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fixed_width_no_modeling.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fixed_width_no_modeling.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
ameslab 4.021  0.258   5.343
Maintainer: ‘Mouloud Belbahri <mouloud.belbahri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mouloud",
                      family = "Belbahri",
                      role = c("aut", "cre"),
                      email = "mouloud.belbahri@gmail.com"),
               person(given = "Olivier",
                      family = "Gandouet",
                      role = "aut"),
               person(given = "Alejandro",
                      family = "Murua",
                      role = "aut"),
               person(given = c("Vahid", "Partovi"),
                      family = "Nia",
                      role = "aut"))
as necessary.
Maintainer: ‘Tien-Cheng Wang <wangtien@student.hu-berlin.de>’

The Description field contains
  (1988) <https://cdnsciencepub.com/doi/abs/10.4141/cjps88-018>.  Nassar
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
checkRd: (-1) Data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:17: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gregory W. Schwartz <gsch@pennmedicine.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Gregory", "W."),
                    family = "Schwartz",
                    role = c("aut", "cre"),
                    email = "gsch@pennmedicine.upenn.edu")
as necessary.
Maintainer: ‘Damian W. Betebenner <dbetebenner@nciea.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup?
    21 | Recommended range is in {5, ..., 20}.}
       |                         ^
checkRd: (-1) getSegsExtra.Rd:14: Lost braces
    14 | \item{data}{data.table returned from function /code{tdtr}}
       |                                                    ^
Maintainer: ‘Doug Friedman <doug.nhp@gmail.com>’

The Description field contains
  <arXiv:1206.4631v1>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

The Description field contains
  David M. Blei (2019), available at <arXiv:1907.04907>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ETM.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
ETM         107.405  1.674 132.527
plot.ETM      9.856  0.070  13.445
summary.ETM   6.587  0.002   8.918
Maintainer: ‘Minzhe Wang <minzhew@uchicago.edu>’

The Description field contains
  (2017) <arXiv:1704.07016>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bastian Pfeifer <bastian.pfeifer@medunigraz.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "G."),
                      family = "Schimek",
                      role = "aut"),
               person(given = "Eva",
                      family = "Budinska",
                      role = "aut"),
               person(given = "Jie",
                      family = "Ding",
                      role = "aut"),
               person(given = c("Karl", "G."),
                      family = "Kugler",
                      role = "aut"),
               person(given = "Vendula",
                      family = "Svendova",
                      role = "aut"),
               person(given = "Shili",
                      family = "Lin",
                      role = "aut"),
               person(given = "Bastian",
                      family = "Pfeifer",
                      role = c("aut", "cre"),
                      email = "bastian.pfeifer@medunigraz.at"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
topoLCP          8.155  0.402  11.426
topoWeightedDist 8.241  0.102  10.481
topoDist         5.992  0.237   8.043
topoPathMap      4.530  0.099   5.397
topoPaths        4.033  0.019   5.029
Maintainer: ‘Gabriele Sales <gabriele.sales@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sofia",
                      family = "Massa",
                      role = "aut"),
               person(given = "Gabriele",
                      family = "Sales",
                      role = c("aut", "cre"),
                      email = "gabriele.sales@unipd.it"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dat_checks.R’ ‘setters_and_getters.R’
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
topr 4.38  0.382   5.347
Maintainer: ‘Mahmoud Mosalman Yazdi <m.mosalman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mahmoud", "Mosalman"),
                    family = "Yazdi",
                    role = c("aut", "cre"),
                    email = "m.mosalman@gmail.com")
as necessary.
Maintainer: ‘Gilberto Camara <gilberto.camara.inpe@gmail.com>’

The Description field contains
  (a) 'adabelief' by Zhuang et al (2020), <arXiv:2010.07468>; (b)
  'adabound' by Luo et al.(2019), <arXiv:1902.09843>; (c) 'adahessian' by
  Yao et al.(2021) <arXiv:2006.00719>; (d) 'adamw' by Loshchilov & Hutter
  (2019), <arXiv:1711.05101>; (e) 'madgrad' by Defazio and Jelassi
  (2021), <arXiv:2101.11075>; (f) 'nadam' by Dozat (2019),
  Ma and Yarats(2019), <arXiv:1810.06801>; (h) 'radam' by Liu et al.
  (2019), <arXiv:1908.03265>; (i) 'swats' by Shekar and Sochee (2018),
  <arXiv:1712.07628>; (j) 'yogi' by Zaheer et al.(2019),
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
optim_nadam     7.391  0.096   8.385
optim_adabelief 5.733  0.164   6.741
optim_swats     5.679  0.012   6.497
File ‘torch/libs/torch.so’:
  Found non-API call to R: ‘DATAPTR’
File ‘torch/libs/torchpkg.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
importance.train 3.945   0.08   5.493
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
dataTOSTone 5.730  0.100   8.048
dataTOSTtwo 5.707  0.056   7.846
Maintainer: ‘Guanglai Li <liguanglai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Guanglai",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "liguanglai@gmail.com")
as necessary.
Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Wenjie Wang <wang@wwenjie.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
fit.model.tou  6.458  0.028   9.704
draw.model.tou 6.207  0.172   9.566
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘response_builder.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
graph_data_prep 6.034  0.115   7.792
rank_sites_DT   4.577  0.047   5.952
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
TxpResult-plot 4.056  0.056   5.012
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TPACForCancer.Rd: hpa.data
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Xiang Lyu <lyu17@purdue.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanfang",
                      family = "Yang",
                      role = "aut"),
               person(given = "Kun",
                      family = "Lu",
                      role = "aut"),
               person(given = "Xiang",
                      family = "Lyu",
                      role = c("aut", "cre"),
                      email = "lyu17@purdue.edu"),
               person(given = "Feifang",
                      family = "Hu",
                      role = "aut"),
               person(given = "Yichuan",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Maintainer: ‘Ronja Foraita <foraita@leibniz-bips.de>’

The Description field contains
  <arXiv:2108.13395> provide a guide how to use tpc to analyse cohort
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Cynthia Shao <cynyu.shao@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cynthia",
                      family = "Shao",
                      role = c("aut", "cre"),
                      email = "cynyu.shao@gmail.com"),
               person(given = "Runze",
                      family = "Li",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
TPC_pl_BIC 5.455  0.218   6.593
TPC_pl     4.547  0.165   6.595
Maintainer: ‘Carlos P. Carmona <perezcarmonacarlos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "P."),
                    family = "Carmona",
                    role = c("aut", "cre"),
                    email = "perezcarmonacarlos@gmail.com")
as necessary.
Maintainer: ‘Wei Jiang <jiangwei@hrbmu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wei",
                    family = "Jiang",
                    role = c("aut", "cre"),
                    email = "jiangwei@hrbmu.edu.cn")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
TPEA 8.159  0.131  10.079
Maintainer: ‘Alessio Locallo <alessio.locallo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessio",
                      family = "Locallo",
                      role = c("aut", "cre"),
                      email = "alessio.locallo@gmail.com"),
               person(given = "Davide",
                      family = "Prandi",
                      role = "aut",
                      email = "davide.prandi@unitn.it"),
               person(given = "Francesca",
                      family = "Demichelis",
                      role = "aut",
                      email = "f.demichelis@unitn.it"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
TPES_report 6.936  0.011   9.954
TPES_purity 6.751  0.145   9.271
Maintainer: ‘Vanesa Balboa-Barreiro <vanesa.balboa@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Vanesa",
                      family = "Balboa-Barreiro",
                      role = c("aut", "cre"),
                      email = "vanesa.balboa@uvigo.es"),
               person(given = "Jacobo",
                      family = "de Una-Alvarez",
                      role = "aut",
                      email = "jacobo@uvigo.es"),
               person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut",
                      email = "lmachado@math.uminho.pt"))
as necessary.

File 'R/TP.idm-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
test.nm    4.555   0.02   5.830
plot.TPidm 3.925   0.00   5.259
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘replace_leading_whitespace.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  heartTP.Rd: heart
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
est.stpn 6.165   0.11   7.779
Maintainer: ‘Jun Yan <jun.yan@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jun",
                    family = "Yan",
                    role = c("aut", "cre"),
                    email = "jun.yan@uconn.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
dnase 5.217  0.031   6.282
Maintainer: ‘Chanwoo Lee <chanwoo.lee@wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chanwoo",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "chanwoo.lee@wisc.edu"),
               person(given = "Lexin",
                      family = "Li",
                      role = "aut",
                      email = "lexinli@berkeley.edu"),
               person(given = c("Hao", "Helen"),
                      family = "Zhang",
                      role = "aut",
                      email = "hzhang@math.arizona.edu"),
               person(given = "Miaoyan",
                      family = "Wang",
                      role = "aut",
                      email = "miaoyan.wang@wisc.edu"))
as necessary.

The Description field contains
  Series Representation. <arXiv:2105.01783>. The method employs the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
assign_index_peaks 3.67  0.128   5.333
checkRd: (-1) parse_beast_output_files.Rd:23: Lost braces
    23 |     item{\code{estimates}: parameter estimates}
       |         ^
checkRd: (-1) parse_beast_output_files.Rd:24-28: Lost braces
    24 |     item{
       |         ^
checkRd: (-1) parse_beast_output_files.Rd:29-31: Lost braces
    29 |     item{\code{operators}: the BEAST2 MCMC operator
       |         ^
checkRd: (-1) parse_beast_posterior.Rd:28: Lost braces
    28 |     item{\code{estimates}: parameter estimates}
       |         ^
checkRd: (-1) parse_beast_posterior.Rd:29-33: Lost braces
    29 |     item{
       |         ^
Maintainer: ‘Filipe Campelo <fcampelo@uc.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Filipe",
                    family = "Campelo",
                    role = c("aut", "cre"),
                    email = "fcampelo@uc.pt")
as necessary.
Maintainer: ‘Marjolein Bruijning <m.bruijning@uva.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marjolein",
                      family = "Bruijning",
                      role = c("aut", "cre"),
                      email = "m.bruijning@uva.nl"),
               person(given = c("Marco", "D."),
                      family = "Visser",
                      role = "aut"),
               person(given = c("Caspar", "A."),
                      family = "Hallmann",
                      role = "aut"),
               person(given = "Eelke",
                      family = "Jongejans",
                      role = "aut"))
as necessary.
Maintainer: ‘Claudio Zandonella Callegher <claudiozandonella@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Wprime.Rd: foreach
  read_directory.Rd: foreach
  smoother_control.trackeRdata.Rd: foreach
  zones.Rd: foreach
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Brian Battaile <brian.battaile@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brian",
                    family = "Battaile",
                    role = c("aut", "cre"),
                    email = "brian.battaile@gmail.com")
as necessary.
Maintainer: ‘Jon Clayden <code@clayden.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jon",
                    family = "Clayden",
                    role = c("aut", "cre"),
                    email = "code@clayden.org")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  printLabelledValues.Rd: setOutputLevel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Charles Taragin <ctaragin+trader@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles",
                    family = "Taragin",
                    role = c("aut", "cre"),
                    email = "ctaragin+trader@gmail.com")
as necessary.
checkRd: (-1) Sim-Functions.Rd:99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:100-102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:108: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:109-110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:111-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:114-116: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Sim-Functions.Rd: Logit-class, CES-class
  cournot_tariff.Rd: Cournot-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
TRADER-package 10.14  0.339  12.569
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
CalcUKThunderBallPnL     9.867  0.108  16.022
UKThunderballBacktesting 9.815  0.067  14.760
UKLotteryExample         8.228  0.042  13.112
CalcUKLotteryPnL         7.790  0.184  12.804
CalcEuroLotteryPnL       5.588  0.087   6.680
UKLotteryBacktesting     5.324  0.042   6.668
EuroLotteryBacktesting   5.159  0.106   8.309
EuroMillionsExample      4.785  0.045   7.221
Maintainer: ‘Kleanthis Koupidis <koupidis.okfgr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kleanthis",
                      family = "Koupidis",
                      role = c("aut", "cre"),
                      email = "koupidis.okfgr@gmail.com"),
               person(given = "Aikaterini",
                      family = "Chatzopoulou",
                      role = "aut"),
               person(given = "Charalampos",
                      family = "Bratsas",
                      role = "aut"),
               person(given = "Panagiotis",
                      family = "Tzenos",
                      role = "dtc"),
               person(given = c("Josep", "Maria"),
                      family = "Salanova",
                      role = "dtc"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘predict.R’ ‘train.R’ ‘variables.R’
checkRd: (-1) trait_missing.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:19-20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
as.list.TracksCollection 5.850  0.102   6.524
pcfinhom.Track           5.226  0.155   7.302
Kinhom.Track             4.835  0.090   5.523
'::' or ':::' import not declared from: ‘devtools’
'library' or 'require' calls not declared from:
  ‘XML’ ‘devtools’ ‘jsonlite’ ‘ks’ ‘maps’
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
build_traj 4.465  0.087   6.269
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
seqdist 3.002  0.001   5.377
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
PolrME 4.756  0.043   6.476
Maintainer: ‘Lucas Kook <lucasheinrich.kook@gmail.com>’

The Description field contains
  <doi:10.1111/sjos.12291> and Bischl et al. (2016) <arxiv:1703.03373>,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Rich FitzJohn <rich.fitzjohn@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
tram-methods 7.748  0.071  11.361
mmlt         7.624  0.080  10.976
perm_test    6.139  0.055   8.729
Coxph        4.972  0.040   6.953
Maintainer: ‘Babak Naderi <bnaderi9@gmail.com>’

The Description field contains
  Möller (2020) <arXiv:2004.11490>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mingyang Ren <renmingyang17@mails.ucas.ac.cn>’

The Description field contains
  M., Zhen Y., and Wang J. (2022) <arXiv:2211.09391> "Transfer learning
  <arXiv:2310.10239> "Structural transfer learning of non-Gaussian DAG".
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
TLLiNGAM 3.403  0.035   5.343
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  translate.logit.Rd: multinom
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Cristhian Paredes <craparedesca@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cristhian",
                      family = "Paredes",
                      role = c("aut", "cre"),
                      email = "craparedesca@unal.edu.co"),
               person(given = c("Eduardo", "Rodríguez", "de", "San"),
                      family = "Miguel",
                      role = "aut"))
as necessary.
Maintainer: ‘Jie Zhou <zhoujie02569@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jie",
                      family = "Zhou",
                      role = c("aut", "cre"),
                      email = "zhoujie02569@gmail.com"),
               person(given = "Jiajia",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Wenbin",
                      family = "Lu",
                      role = "aut"))
as necessary.
Maintainer: ‘Xavier Didelot <xavier.didelot@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
transport_ate 4.037  0.245   5.187
Maintainer: ‘Somenath Sit <somenath.bhu.2010@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Somenath",
                    family = "Sit",
                    role = c("aut", "cre"),
                    email = "somenath.bhu.2010@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
DESeq2_analyze 7.081  0.299   7.713
Maintainer: ‘Mingyang Ren <renmingyang17@mails.ucas.ac.cn>’

The Description field contains
  <arXiv:2211.09391>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Maintainer: ‘Almut E. D. Veraart <a.veraart@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Almut", "E.", "D."),
                    family = "Veraart",
                    role = c("aut", "cre"),
                    email = "a.veraart@imperial.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
trc_cor_test 6.501  0.067   7.664
null_perm    4.367  0.117   5.548
Maintainer: ‘Lam Opal Huang <opal.huang@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lam", "Opal"),
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "opal.huang@mail.mcgill.ca")
as necessary.
Maintainer: ‘Marshall Brown <mdbrown@fhcrc.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marshall",
                      family = "Brown",
                      role = c("aut", "cre"),
                      email = "mdbrown@fhcrc.org"),
               person(given = "Holly",
                      family = "Janes",
                      role = "aut"))
as necessary.
checkRd: (-1) trtsel.Rd:69: Lost braces; missing escapes or markup?
    69 | numeric with two values {0,1} and gaussian(link = "identity") otherwise.
       |                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tree_mesh.R’ ‘tree_mesh.Rd’ ‘zzz.R’
Maintainer: ‘Sam Buttrey <buttrey@nps.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sam",
                    family = "Buttrey",
                    role = c("aut", "cre"),
                    email = "buttrey@nps.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rpart.predict.leaves.Rd: rpart
  treeClust.Rd: rpart.control
  treeClust.dist.Rd: daisy
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Sophie Kersting <sophie_kersting@gmx.de>’

The Description field contains
  Kersting, and L. Kühn (2023) <arXiv:2307.14537>, which provides precise
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Silvestre Garcia de Jalon <s.garciadejalon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Silvestre", "Garcia"),
                    family = "de Jalon",
                    role = c("aut", "cre"),
                    email = "s.garciadejalon@gmail.com")
as necessary.
Maintainer: ‘Wen Tian (Wendy) Wang <wtwang@sfu.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Wen", "Tian", "Wang,Lloyd"),
                      family = "Elliott",
                      role = "aut",
                      comment = "Wendy"),
               person(given = c("Wen", "Tian"),
                      family = "Wang",
                      role = "cre",
                      email = "wtwang@sfu.ca",
                      comment = "Wendy"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
heat_tree    14.325  0.144  19.572
draw_heat     4.369  0.133   5.195
compute_tree  4.296  0.141   5.389
draw_tree     3.842  0.075   5.016
Maintainer: ‘Qingyao Sun <sunqingyao19970825@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qingyao",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "sunqingyao19970825@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  work of Li et al. (2019) <arXiv:1906.10845>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
treemap 4.348  0.071    5.21
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
TreeMineR 8.446  0.281   7.647
Maintainer: ‘Matthew Gould <mgould@sfu.ca>’

The Description field contains
  <arXiv:1904.03332>). The core method converts rooted unlabeled phylo
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
get_correction_factors 6.027  0.015   8.209
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
TreeRingShape          6.488  0.130   9.355
TreeRingsInterpolation 5.147  0.342   6.927
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ranger_surv.unify.Rd’
Maintainer: ‘Oskar Hagen <oskar.hagen@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oskar",
                      family = "Hagen",
                      role = c("aut", "cre"),
                      email = "oskar.hagen@outlook.com"),
               person(given = "Tanja",
                      family = "Stadler",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
sim.age 3.653  0.033   6.262
Maintainer: ‘Tanja Stadler <tanja.stadler@bsse.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tanja",
                    family = "Stadler",
                    role = c("aut", "cre"),
                    email = "tanja.stadler@bsse.ethz.ch")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotGroves.Rd: s.class
  plotGrovesD3.Rd: scatterD3
  plotTreeDiff.Rd: plot.phylo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Erik Volz <erik.volz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Erik",
                    family = "Volz",
                    role = c("aut", "cre"),
                    email = "erik.volz@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
scale_lcars 3.66  0.165   5.104
Maintainer: ‘Ashkan Ertefaie <ashkan_ertefaie@urmc.rochester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xinyao",
                      family = "Ji",
                      role = "aut"),
               person(given = "Ashkan",
                      family = "Ertefaie",
                      role = c("aut", "cre"),
                      email = "ashkan_ertefaie@urmc.rochester.edu"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
TLSW 5.502   0.07    6.84
Maintainer: ‘Phil J Watson <philwatson.slr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Phil", "J"),
                    family = "Watson",
                    role = c("aut", "cre"),
                    email = "philwatson.slr@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  check.decomp.Rd: Rssa
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
check.decomp 5.754  0.222     6.7
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
TRR.fit 4.429      0   5.177
Maintainer: ‘Jasin Machkour <jasin.machkour@tu-darmstadt.de>’

The Description field contains
  (2022) <arXiv:2110.06048>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
Triact 5.96  0.361   4.744
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_weights.Rd’ ‘fit_msm.Rd’ ‘load_expanded_data.Rd’
    ‘save_to_csv.Rd’ ‘save_to_datatable.Rd’ ‘save_to_duckdb.Rd’
    ‘set_censor_weight_model.Rd’ ‘set_data.Rd’ ‘set_expansion_options.Rd’
    ‘set_outcome_model.Rd’ ‘set_switch_weight_model.Rd’
    ‘weight_model_data_indices.Rd’
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
crm_prior_beliefs 2.295  1.659   5.746
Maintainer: ‘Vicky Qian Wu <wuqian7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ed", "Zhang", ";", "Vicky", "Qian", "Wu", ";", "Shein-Chung", "Chow", ";", "Harry"),
                      family = "G.Zhang",
                      role = "aut",
                      email = "ed.zhang.jr@gmail.com",
                      comment = "Quality check"),
               person(given = c("Vicky", "Qian"),
                      family = "Wu",
                      role = "cre",
                      email = "wuqian7@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) coef.tridim_transformation.Rd:31: Lost braces
    31 | If summary=TRUE, a data.frame with columns "dv{index}" with mean for each dependent
       |                                               ^
checkRd: (-1) coef.tridim_transformation.Rd:32: Lost braces
    32 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                        ^
checkRd: (-1) coef.tridim_transformation.Rd:32: Lost braces; missing escapes or markup?
    32 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                                ^
checkRd: (-1) predict.tridim_transformation.Rd:24: Lost braces
    24 | If summary=TRUE, a data.frame with columns "dv{index}" with mean for each dependent
       |                                               ^
checkRd: (-1) predict.tridim_transformation.Rd:25: Lost braces
    25 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                        ^
checkRd: (-1) predict.tridim_transformation.Rd:25: Lost braces; missing escapes or markup?
    25 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                                ^
checkRd: (-1) variable_summary.Rd:18: Lost braces; missing escapes or markup?
    18 | data.frame with "{var_name}" column for the mean and
       |                  ^
checkRd: (-1) variable_summary.Rd:19: Lost braces; missing escapes or markup?
    19 | "{var_name}_{prob}" columns for each probability.
       |  ^
checkRd: (-1) variable_summary.Rd:19: Lost braces; missing escapes or markup?
    19 | "{var_name}_{prob}" columns for each probability.
       |             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TriDimRegression-package.Rd: loo, waic
  waic.tridim_transformation.Rd: loo-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
TriDimRegression-package 4.211  0.056   5.105
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Drew",
                      family = "Schmidt",
                      role = "aut"),
               person(given = "Yuuki",
                      family = "Takano",
                      role = "cph"))
as necessary.
Maintainer: ‘Phil Mike Jones <philmikejones@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Maintainer: ‘Valentin Todorov <valentin.todorov@chello.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Hennig",
                      role = "aut",
                      email = "chrish@stats.ucl.ac.uk"),
               person(given = "Valentin",
                      family = "Todorov",
                      role = "cre",
                      email = "valentin.todorov@chello.at"))
as necessary.
Maintainer: ‘Timo Stöcker <timo.stoecker@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Timo",
                      family = "Stöcker",
                      role = c("aut", "cre"),
                      email = "timo.stoecker@hhu.de"),
               person(given = "Noah",
                      family = "Simon",
                      role = "aut"),
               person(given = "Jerome",
                      family = "Friedman",
                      role = "aut"),
               person(given = "Trevor",
                      family = "Hastie",
                      role = "aut"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/Trackage/tripEstimation
which should likely be
  https://github.com/Trackage/tripEstimation/issues
instead.
Maintainer: ‘Felix Schönbrodt <felix.schoenbrodt@psy.lmu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("F.", "D."),
                      family = "Schönbrodt",
                      role = "aut"),
               person(given = c("M.", "D."),
                      family = "Back",
                      role = "aut"),
               person(given = c("S.", "C."),
                      family = "Schmukle",
                      role = "aut"),
               person(given = "Felix",
                      family = "Schönbrodt",
                      role = "cre",
                      email = "felix.schoenbrodt@psy.lmu.de"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
getEffects 3.857  0.159    5.59
Maintainer: ‘Katarzyna Pekala <katarzyna.pekala@gmail.com>’

The Description field contains
  models. Find more details in Biecek (2018) <arXiv:1806.08915>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
resampling_Bernoulli 5.128  0.040   6.203
triptych             4.879  0.039   6.009
plot.triptych        4.484  0.080   5.097
Maintainer: ‘Chad Hammerquist <chammerquist@scentsy.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chad",
                      family = "Hammerquist",
                      role = c("aut", "cre"),
                      email = "chammerquist@scentsy.com"),
               person(given = "Scentsy",
                      family = "Inc",
                      role = "cph"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_troopdata.R’
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
predict_mod 4.125  0.106   5.957
Maintainer: ‘Richard Ambler <rambler@ibwya.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Richard",
                    family = "Ambler",
                    role = c("aut", "cre"),
                    email = "rambler@ibwya.net")
as necessary.
Malformed Title field: should not end in a period.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
troublemaker 3.774      0   5.559
Maintainer: ‘Somjit Roy <somjit.roy2001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Somjit",
                    family = "Roy",
                    role = c("aut", "cre"),
                    email = "somjit.roy2001@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
tsegest 10.887  0.114  15.621
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_item_metadata.R’ ‘get_subscribed_metadata.R’
Maintainer: ‘David Hugh-Jones <davidhughjones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Hugh-Jones",
                    role = c("aut", "cre"),
                    email = "davidhughjones@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
truh 1.964  0.056   5.889
Maintainer: ‘Yuyao Wang <yuw079@ucsd.edu>’

The Description field contains
  dependent left truncation" <arXiv:2208.06836>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Frederick",
                      family = "Novomestky",
                      role = c("aut", "cre"),
                      email = "fn334@nyu.edu"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = "aut",
                      email = "saralees.nadarajah@manchester.ac.uk"))
as necessary.
Maintainer: ‘Anita Lindmark <anita.lindmark@stat.umu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anita",
                      family = "Lindmark",
                      role = c("aut", "cre"),
                      email = "anita.lindmark@stat.umu.se"),
               person(given = "Maria",
                      family = "Karlsson",
                      role = "aut"),
               person(given = c("Department", "of"),
                      family = "Statistics",
                      role = "aut"),
               person(given = "Umea",
                      family = "University",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Michael Braun <braunm@smu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer.",
                      role = "aut",
                      email = "charlie@stat.umn.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘log2console’
Maintainer: ‘Rainer Schlittgen <R.Schlittgen@t-online.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rainer",
                    family = "Schlittgen",
                    role = c("aut", "cre"),
                    email = "r.schlittgen@t-online.de")
as necessary.
Maintainer: ‘Kung-Sik Chan <kungsik.chan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kung-Sik",
                      family = "Chan",
                      role = c("aut", "cre"),
                      email = "kungsik.chan@gmail.com"),
               person(given = "Brian",
                      family = "Ripley",
                      role = "aut"))
as necessary.
checkRd: (-1) summary.armasubsets.Rd:16: Lost braces
    16 | \item{matrix.logical}{With matrix=TRUE, the matrix is logical TRUE/FALSE or string "*"/code{" "}}
       |                                                                                            ^
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [132s/39s]
Running R code in ‘testthat.R’ had CPU time 3.4 times elapsed time
checkRd: (-1) tsBSS-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:34: Lost braces in \itemize; meant \describe ?
Maintainer: ‘David Carl <david.carl@phd.unibocconi.it>’

The Description field contains
  Variables" <arXiv:2203.12808>. The vignette is available in Carl,
  <arXiv:2304.00513>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pablo Montero Manso <pmontm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) diss.AR.LPC.CEPS.Rd:39: Lost braces; missing escapes or markup?
    39 | If \code{order.x} or {order.y} are \code{NULL}, their respective series will be fitted automatically using a AR model.
       |                      ^
checkRd: (-1) diss.AR.PIC.Rd:31: Lost braces; missing escapes or markup?
    31 | If \code{order.x} or {order.y} are \code{NULL}, their respective series will be fitted automatically using a AR model. If \code{permissive} is \code{TRUE} and no AR order is found automatically, an AR order of 1 will be imposed, if this case fails, then no order can be found and the function produces an error.
       |                      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  diss.DTWARP.Rd: pdc
  diss.FRECHET.Rd: longitudinalData
  diss.PDC.Rd: pdc
  diss.Rd: pdc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
diss.PRED    4  0.636   5.388
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
profilefulcrum 4.782  0.018   5.779
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
tsglm 3.228  0.005   5.304
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_distance.R’ ‘reason_dataleaks.R’ ‘viz_dataleaks.R’
Maintainer: ‘Javier López-de-Lacalle <javlacalle@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "López-de-Lacalle",
                    role = c("aut", "cre"),
                    email = "javlacalle@yahoo.es")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘tsdecomp-package.Rd’:
    \keyword{package, ts}
Maintainer: ‘Wenchuan Guo <wguo1017@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wenchuan",
                      family = "Guo",
                      role = c("aut", "cre"),
                      email = "wguo1017@gmail.com"),
               person(given = "Jianan",
                      family = "Hui",
                      role = "aut"),
               person(given = "Bob",
                      family = "Zhong",
                      role = "aut"))
as necessary.
Maintainer: ‘Jorge Vieira <jorgealexandrevieira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jorge",
                    family = "Vieira",
                    role = c("aut", "cre"),
                    email = "jorgealexandrevieira@gmail.com")
as necessary.
Maintainer: ‘Luke Mosley <l.mosley@lancaster.ac.uk>’

The Description field contains
  <arXiv:2108.05783> for disaggregating low-frequency series in the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) disaggregate.Rd:56: Escaped LaTeX specials: \&
Maintainer: ‘Usue Mori <usue.mori@ehu.eus>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) example.database2.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) example.database2.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) example.database3.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) example.database3.Rd:19: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
TSDT 5.447  0.008   6.481
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
extractSubset 2.114  0.151  12.003
Maintainer: ‘Vitor Cerqueira <cerqueira.vitormanuel@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hakki Sabah <hakkisabah@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hakki",
                    family = "Sabah",
                    role = c("aut", "cre"),
                    email = "hakkisabah@hotmail.com")
as necessary.
Maintainer: ‘Antonio Fabio Di Narzo <antonio.fabio@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Antonio",
                      role = c("aut", "cre"),
                      email = "antonio.fabio@gmail.com"),
               person(given = c("Fabio", "Di"),
                      family = "Narzo",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
TAR.test.B 4.09   0.01   5.736
Maintainer: ‘Ali Saeb <ali.saeb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ali",
                    family = "Saeb",
                    role = c("aut", "cre"),
                    email = "ali.saeb@gmail.com")
as necessary.
Maintainer: ‘Francisco Martinez <fmartin@ujaen.es>’

The BugReports field in DESCRIPTION has
  https://github.com/franciscomartinezdelrio/tsfgrnn
which should likely be
  https://github.com/franciscomartinezdelrio/tsfgrnn/issues
instead.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
autoplot.knnForecast 8.395  0.216  11.926
Maintainer: ‘Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sandipan",
                      family = "Samanta",
                      role = "aut"),
               person(given = c("Ranjit", "Kumar"),
                      family = "Paul",
                      role = "aut"),
               person(given = "Dipankar",
                      family = "Mitra",
                      role = "aut"),
               person(given = c("Dr.", "Ranjit", "Kumar"),
                      family = "Paul",
                      role = "cre",
                      email = "ranjitstat@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
forecastTSF 8.632  0.085  12.065
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘benchmark.R’ ‘print.R’
Maintainer: ‘Yao-Hwei Fang <yhfang@nhri.org.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yao-Hwei",
                      family = "Fang",
                      role = c("aut", "cre"),
                      email = "yhfang@nhri.org.tw"),
               person(given = "Jie-Huei",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Chao", "A."),
                      family = "Hsiung",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
TSGSIS 13.669  0.093  15.372
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
featureSelect 4.633   0.06   6.369
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jun",
                      family = "Sheng",
                      role = "aut"),
               person(given = "Peihua",
                      family = "Qiu",
                      role = "aut",
                      email = "pqiu@ufl.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"))
as necessary.
Maintainer: ‘Eraldo B. dos Anjos Filho <ebdaf1@de.ufpe.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Eraldo", "B.", "dos", "Anjos"),
                      family = "Filho",
                      role = c("aut", "cre"),
                      email = "ebdaf1@de.ufpe.br"),
               person(given = c("Aldo", "William", "Medina"),
                      family = "Garay",
                      role = "aut",
                      email = "agaray@de.ufpe.br"))
as necessary.
Maintainer: ‘Roger D. Peng <roger.peng@austin.utexas.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Roger", "D."),
                      family = "Peng",
                      role = c("aut", "cre"),
                      email = "roger.peng@austin.utexas.edu"),
               person(given = c("with", "contributions", "from", "Aidan"),
                      family = "McDermott",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  density.Rd: networkDynamic
  durations.Rd: net.obs.period, as.data.frame.networkDynamic,
    get.vertex.activity
  incidence.Rd: networkDynamic
  plotpath.Rd: plot.network
  tDegree.Rd: networkDynamic
  tErgmStats.Rd: networkDynamic, network.collapse
  tSnaStats.Rd: network.collapse
  tiedDuration.Rd: networkDynamic
  timeProjectedNetwork.Rd: networkDynamic, network.collapse,
    get.networks, network
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Justin Donaldson <jdonaldson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Justin",
                    family = "Donaldson",
                    role = c("aut", "cre"),
                    email = "jdonaldson@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘centrality.R’ ‘compare_gvar.R’ ‘posterior_plot.R’
Maintainer: ‘Javier López-de-Lacalle <javlacalle@yahoo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "López-de-Lacalle",
                    role = c("aut", "cre"),
                    email = "javlacalle@yahoo.es")
as necessary.
Maintainer: ‘Jouni Helske <jouni.helske@iki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jouni",
                    family = "Helske",
                    role = c("aut", "cre"),
                    email = "jouni.helske@iki.fi")
as necessary.
Maintainer: ‘Bernd Bischl <bernd_bischl@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernd",
                      family = "Bischl",
                      role = c("aut", "cre"),
                      email = "bernd_bischl@gmx.net"),
               person(given = "Jakob",
                      family = "Bossek",
                      role = "aut",
                      email = "jakob.bossek@tu-dortmund.de"),
               person(given = "Olaf",
                      family = "Mersmann",
                      role = "aut",
                      email = "olafm@p-value.net"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Eduardo Ogasawara [aut, ths, cre] (<https://orcid.org/0000-0002-0466-0626>), Carla Pacheco [aut], Cristiane Gea [aut], Diogo Santos [aut], Rebecca Salles [aut], Vitoria Birindiba [aut], Eduardo Bezerra [aut], Esther Pacitti [aut], Fabio Porto [aut], CEFET/RJ [cph] (Federal Center for Technological Education of Rio de Janeiro)’
  Authors@R: ‘Eduardo Ogasawara [aut, ths, cre] (ORCID: <https://orcid.org/0000-0002-0466-0626>), Carla Pacheco [aut], Cristiane Gea [aut], Diogo Santos [aut], Rebecca Salles [aut], Vitoria Birindiba [aut], Eduardo Bezerra [aut], Esther Pacitti [aut], Fabio Porto [aut], CEFET/RJ [cph] (organization: Federal Center for Technological Education of Rio de Janeiro)’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  arimapar-deprecated.Rd: auto.arima
  arimapred.Rd: auto.arima
  fittestArima.Rd: auto.arima, forecast
  fittestArimaKF.Rd: predict.SSModel, SSMarima, KFAS, auto.arima,
    SSModel, AICc
  fittestEMD.Rd: AICc
  fittestLM.Rd: AICc
  fittestMAS.Rd: ets, stlf, AICc
  fittestPolyR.Rd: dredge, AICc
  fittestPolyRKF.Rd: SSModel, KFAS, fitSSM, AICc
  fittestWavelet.Rd: ets, AICc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
train.tspred 5.758  0.059   7.832
Maintainer: ‘Higor Cotta <cotta.higor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Higor",
                      family = "Cotta",
                      role = c("aut", "cre"),
                      email = "cotta.higor@gmail.com"),
               person(given = "Valderio",
                      family = "Reisen",
                      role = "aut"),
               person(given = "Pascal",
                      family = "Bondon",
                      role = "aut"),
               person(given = "Céline",
                      family = "Lévy-Leduc",
                      role = "aut"))
as necessary.
Maintainer: ‘Peter Laurinec <tsreprpackage@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) repr_dwt.Rd:28: Lost braces; missing escapes or markup?
    28 | The final representation has length equal to floor(n / 2^{level}), where n is a length of original time series.
       |                                                          ^
Maintainer: ‘Michał Narajewski <michal.narajewski@uni-due.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Avi Blinder <aviblinder@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Avi",
                    family = "Blinder",
                    role = c("aut", "cre"),
                    email = "aviblinder@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
run_models 5.919  0.068   9.045
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
sim_daily 4.104  0.086   5.213
Maintainer: ‘Arden Burrell <arden.burrell@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Masami Saga <msaga@mtb.biglobe.ne.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("The", "Institute", "of", "Statistical"),
                      family = "Mathematics",
                      role = "aut"),
               person(given = c("based", "on", "the", "program", "by", "Genshiro"),
                      family = "Kitagawa",
                      role = "aut"),
               person(given = "Masami",
                      family = "Saga",
                      role = "cre",
                      email = "msaga@mtb.biglobe.ne.jp"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘berkowitz.R’ ‘dac.R’ ‘gmm.R’ ‘hongli.R’ ‘minzar.R’ ‘nyblom.R’
    ‘shortfall_de.R’ ‘signbias.R’ ‘var.R’ ‘var_cp.R’
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
gmm_test 8.342  0.424  10.647
Maintainer: ‘Alberto Lopez Moreno <bertolomo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alberto", "Lopez"),
                    family = "Moreno",
                    role = c("aut", "cre"),
                    email = "bertolomo@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
wbg.boot.wge 8.116   0.04   9.647
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  FULLoption.Rd: impute, local.trend, mannKen, seasonTrend, seaKen
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotmatch.Rd: ppp
  sumppdist.Rd: ppp, solist
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Marco Albrecht <marco.albrecht@posteo.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Albrecht",
                    role = c("aut", "cre"),
                    email = "marco.albrecht@posteo.de")
as necessary.
Maintainer: ‘Meredith Ray <maray@memphis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Meredith",
                      family = "Ray",
                      role = c("aut", "cre"),
                      email = "maray@memphis.edu"),
               person(given = "Xin",
                      family = "Tong",
                      role = "aut"),
               person(given = "Hongmei",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ttScreening-package.Rd: sva
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Antonio Meneses <antoniomenesesfreire@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Meneses",
                      role = c("aut", "cre"),
                      email = "antoniomenesesfreire@hotmail.com"),
               person(given = "Salvador",
                      family = "Naya",
                      role = "aut",
                      email = "salva@udc.es"),
               person(given = "Javier",
                      family = "Tarrio-Saavedra",
                      role = "aut",
                      email = "jtarrio@udc.es"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
TTS_10   5.894  0.015   7.443
PLOT.TTS 4.611  0.156   5.989
Maintainer: ‘Carlos A. Martinez <amartin@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "A.", "Martinez", "based", "on", "the", "work", "of"),
                      family = "Ribeiro",
                      role = c("aut", "cre")),
               person(family = "Rosseti.",
                      comment = "2015"),
               person(given = c("Carlos", "A."),
                      family = "Martinez",
                      role = "cre",
                      email = "amartin@unal.edu.co"))
as necessary.
Maintainer: ‘Thorn Thaler <thorn.thaler@thothal.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thorn",
                    family = "Thaler",
                    role = c("aut", "cre"),
                    email = "thorn.thaler@thothal.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tufte_handout.Rd: pdf_document, html_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael C Sachs <sachsmc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "C"),
                    family = "Sachs",
                    role = c("aut", "cre"),
                    email = "sachsmc@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Yuqing Pan <yuqing.pan@stat.fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuqing",
                      family = "Pan",
                      role = c("aut", "cre"),
                      email = "yuqing.pan@stat.fsu.edu"),
               person(given = "Qing",
                      family = "Mai",
                      role = "aut",
                      email = "mai@stat.fsu.edu"),
               person(given = "Xin",
                      family = "Zhang",
                      role = "aut",
                      email = "henry@stat.fsu.edu"))
as necessary.

The Description field contains
  (2019) <arXiv:1904.03469>. Functions are included for covariate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
cv.msda 7.628  0.219  11.964
Maintainer: ‘Julia Wilkerson <jmwilkers@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julia",
                    family = "Wilkerson",
                    role = c("aut", "cre"),
                    email = "jmwilkers@outlook.com")
as necessary.
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christoph",
                      family = "Müssel",
                      role = "aut"),
               person(given = "Ludwig",
                      family = "Lausser",
                      role = "aut"),
               person(given = "Hans",
                      family = "Kestler",
                      role = c("aut", "cre"),
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
Maintainer: ‘Emmanuel Lazaridis <emmanuel@lazaridis.eu>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘duplicate.Rd’:
    \keyword{duplicate,}
    \keyword{duplicated,}
    \keyword{repeat,}
  File ‘not-in.Rd’:
    \keyword{time,}
  File ‘orphan.Rd’:
    \keyword{orphan,}
  File ‘triplicate.Rd’:
    \keyword{repeat,}
    \keyword{triplicate,}
    \keyword{triplicated,}
  File ‘triplicated.Rd’:
    \keyword{repeat,}
    \keyword{triplicate,}
    \keyword{triplicated,}
  File ‘tuplicate.Rd’:
    \keyword{n-replicate,}
    \keyword{n-replicated,}
    \keyword{repeat,}
    \keyword{repeated,}
  File ‘tuplicated.Rd’:
    \keyword{n-replicate,}
    \keyword{n-replicated,}
    \keyword{repeat,}
    \keyword{repeated,}
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘show_parliament.R’ ‘show_province_and_party.R’
Maintainer: ‘Feifei ZHANG<tushare_pro@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feifei",
                    family = "ZHANG",
                    role = c("aut", "cre"),
                    email = "tushare_pro@163.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
knit_tutorials 4.383  0.339   6.587
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
banzhaf 14.723  0.103  17.513
owen    12.102  0.004  14.144
Maintainer: ‘Susana Campos-Martins <scmartins@ucp.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Susana",
                      family = "Campos-Martins",
                      role = c("aut", "cre"),
                      email = "scmartins@ucp.pt"),
               person(given = "Genaro",
                      family = "Sucarrat",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  coef.mtvgarch.Rd: zoo, garchx
  coef.tvgarch.Rd: zoo
  coef.tvgarchTest.Rd: zoo
  mtvgarch.Rd: zoo, garchx
  mtvgarchSim.Rd: zoo, garchx
  tvgarch.Rd: zoo, garchx
  tvgarchObj.Rd: zoo
  tvgarchSim.Rd: zoo, garchx
  tvgarchTest.Rd: zoo, garchx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
mtvgarch      6.103  0.004   7.559
coef.mtvgarch 4.564  0.019   5.523
Maintainer: ‘Vincent Landau <vincent@csp-inc.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Donna Coffman <dcoffman@temple.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juan Manuel Truppia <jmtruppia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Juan", "Manuel"),
                    family = "Truppia",
                    role = c("aut", "cre"),
                    email = "jmtruppia@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  dx.wts.mediation.Rd: ps
  wgtmed.Rd: gbm, ps, twang
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
desc.effects.mediation    5.080  0.169   6.088
wgtmed                    5.048  0.071   6.296
plot.mediation            5.042  0.076   6.593
desc.effects              4.922  0.098   6.402
print.mediation           4.924  0.078   6.114
print.bal.table.mediation 4.922  0.075   5.776
dx.wts.mediation          4.855  0.075   5.693
summary.mediation         4.847  0.082   5.445
Maintainer: ‘Lane Burgette <burgette@rand.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthew",
                      family = "Cefalu",
                      role = "aut"),
               person(given = "Greg",
                      family = "Ridgeway",
                      role = "aut"),
               person(given = "Dan",
                      family = "McCaffrey",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Morral",
                      role = "aut"),
               person(given = c("Beth", "Ann"),
                      family = "Griffin",
                      role = "aut"),
               person(given = "Lane",
                      family = "Burgette",
                      role = c("aut", "cre"),
                      email = "burgette@rand.org"))
as necessary.
Maintainer: ‘Peter K. Dunn <pdunn2@usc.edu.au>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) tweedie-internal.Rd:74: Lost braces
    74 |         doi{10.1093/biomet/74.2.221}
       |            ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Swanson <dms866@mail.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Swanson",
                    role = c("aut", "cre"),
                    email = "dms866@mail.harvard.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
TWLsample 12.494  0.292  16.483
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
run_simulation 7.532  0.086  10.821
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
plot-methods 4.65  0.058   5.798
Maintainer: ‘Connor Dowd <cd@codowd.com>’

The Description field contains
  that of Anderson-Darling. See the companion paper at <arXiv:2007.01360>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) twosigmag.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:91: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twoway.Rd:66: Lost braces
    66 | code{\link{twoway.formula}}, code{\link[stats]{medpolish}}
       |     ^
checkRd: (-1) twoway.Rd:66: Lost braces
    66 | code{\link{twoway.formula}}, code{\link[stats]{medpolish}}
       |                                  ^
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
MestTwoWay 4.082  0.075   5.217
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
txshift 4.949  0.052   5.834
File ‘typetracer/libs/typetracer.so’:
  Found non-API call to R: ‘SET_BODY’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Sebastien Thonnard <sebastien.thonnard@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sebastien",
                    family = "Thonnard",
                    role = c("aut", "cre"),
                    email = "sebastien.thonnard@icloud.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
get_last_published_tz 0.11  0.013    6.07
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) cambodia.Rd:47: Lost braces
    47 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
checkRd: (-1) microdata.Rd:33: Lost braces
    33 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
checkRd: (-1) u5mr_cohort.Rd:111: Lost braces
   111 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
divisive_clustering 9.712  0.092  11.373
genetic_kmeans      3.793  0.148   5.246
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
build.UBaymodel 7.194  0.222   5.582
Maintainer: ‘Christophe Zemmour <christophe.zemmour@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "Esterni", "with", "contribution", "from", "Baboukar"),
                      family = "Mane",
                      role = "aut"),
               person(given = "Christophe",
                      family = "Zemmour",
                      role = "cre",
                      email = "christophe.zemmour@gmail.com"))
as necessary.
Maintainer: ‘Mikaela Koutrouli <mikaela.koutrouli@cpr.ku.dk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
    user system elapsed
uci 3.89  0.162    5.05
Maintainer: ‘Gabriela Cybis <gcybis@gmail.com>’

The Description field contains
  Valk and Gabriela B. Cybis (2021) <arXiv:2106.09115>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
is_homo3 7.227  0.085   9.123
uclust3  5.027  0.007   6.451
Maintainer: ‘Shixiang Wang <w_shixiang@163.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Luc Duchateau <Luc.Duchateau@ugent.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hans",
                      family = "Laevens",
                      role = "aut"),
               person(given = "Luc",
                      family = "Duchateau",
                      role = c("aut", "cre"),
                      email = "luc.duchateau@ugent.be"),
               person(given = "Klara",
                      family = "Goethals",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = "aut"),
               person(given = "Paul",
                      family = "Janssen",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer field differs from that derived from Authors@R
  Maintainer: ‘ORPHANED’
  Authors@R:  ‘James Hiebert <hiebert@uvic.ca>’
possible bashism in configure.ac line 34 (should be 'b = a'):
  dnl if test "${ac_cv_lib_expat_XML_ParserCreate}" == yes; then
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
trafftest 3.879  0.429    5.33
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  associationsDiamondPlot.Rd: ggplot
  basicDiamondplotFunctions.Rd: geom_polygon, geom_jitter, ggplot
  biAxisDiamondPlot.Rd: ggplot
  comparisonDiamondPlots.Rd: gtable
  diamondPlot.Rd: ggplot
  ggBoxplot.Rd: ggplot, geom_boxplot
  ggEasyPlots.Rd: ggplot, geom_ridgeline, geom_bar
  ggProportionPlot.Rd: linetype, ggplot2
  ggqq.Rd: ggplot
  knitFig.Rd: ggplot, knit_expand, knit
  meanSDtoDiamondPlot.Rd: ggplot
  meansDiamondPlot.Rd: ggplot
  pwr.omegasq.Rd: pwr.anova.test, pwr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Paul TERNYNCK <ternynck@lisic.univ-littoral.fr>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘MarelCarnot.Rd’:
    http://doi.org/10.17882/39754
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
ZIHR        9.591  0.006  14.269
SummaryZIHR 8.071  0.020  12.217
Prediction  7.414  0.073  11.418
Maintainer: ‘Minna Genbaeck <minna.genback@umu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minna",
                      family = "Genbaeck,",
                      role = c("aut", "cre")),
               person(given = "Minna",
                      family = "Genbaeck",
                      role = "cre",
                      email = "minna.genback@umu.se"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
ui.probit 6.429  0.014   8.662
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
Zdists      12.251  0.004  17.242
Uncertainty  8.926  0.059  12.474
EVPlotAdd    3.948  0.043   5.713
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    uktrans_get is fixed when start_date is used (#2)
    Extra layer of of NULL returns to fail gracefully with an informative message.
    Removed travis & appveyor and using gh_actions instead.
    Using gh-pages to create the pkgdown website.
    Create an app as vignette page to search with the help of uklr.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘augment_gazetteer.Rd’ ‘locate_event.Rd’
Maintainer: ‘Kaniav Kamary <kamary@ceremade.dauphine.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kaniav",
                      family = "Kamary",
                      role = c("aut", "cre"),
                      email = "kamary@ceremade.dauphine.fr"),
               person(given = "Kate",
                      family = "Lee",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘readtextgrid.R’
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
Summary_ultrapolaRplot 6.205  0.068   7.651
Maintainer: ‘Tomasz Konopka <tokonopka@gmail.com>’

The Description field contains
  (2018) in <arXiv:1802.03426>. This package provides an interface for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
umatrixForEsom  4.973  0.051   5.414
ustarmatrixCalc 4.890  0.083   5.374
pmatrixForEsom  4.789  0.055   5.770
plotMatrix      4.434  0.061   5.457
Maintainer: ‘Linus Seelinger <mail@linusseelinger.de>’

The BugReports field in DESCRIPTION has
  https://github.com/um-bridge
which should likely be
  https://github.com/um-bridge/issues
instead.
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
BarcodeFamilyHistogram 5.029  0.378    7.21
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = c("aut", "cre"),
                      email = "charlie@stat.umn.edu"),
               person(given = c("Glen", "D."),
                      family = "Meeden",
                      role = "aut",
                      email = "glen@stat.umn.edu"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
Plot.Mapa    5.199  0.150   6.102
Plot.Boxplot 4.862  0.064   5.356
Maintainer: ‘Piotr Fryzlewicz <p.fryzlewicz@lse.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Piotr",
                    family = "Fryzlewicz",
                    role = c("aut", "cre"),
                    email = "p.fryzlewicz@lse.ac.uk")
as necessary.
Maintainer: ‘Hugo Gasca-Aragon <hugo_gasca_aragon@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hugo",
                    family = "Gasca-Aragon",
                    role = c("aut", "cre"),
                    email = "hugo_gasca_aragon@hotmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
undid_stage_three 6.712  0.084   8.285
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘annotate_mf.R’ ‘annotate_mf_all.R’
Maintainer: ‘Yunro Chung <yunro.chung@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yunro",
                    family = "Chung",
                    role = c("aut", "cre"),
                    email = "yunro.chung@asu.edu")
as necessary.
Maintainer: ‘Oscar Alberto Quijano Xacur <oscar.quijano@use.startmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Oscar", "Alberto", "Quijano"),
                    family = "Xacur",
                    role = c("aut", "cre"),
                    email = "oscar.quijano@use.startmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chia-Wei Hsu <Chia-Wei.Hsu@stjude.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chia-Wei",
                      family = "Hsu",
                      role = c("aut", "cre"),
                      email = "chia-wei.hsu@stjude.org"),
               person(given = "Haitao",
                      family = "Pan",
                      role = "aut"),
               person(given = "Rongji",
                      family = "Mu",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
create_terrain 7.58  0.102  10.088
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Zhipeng Xu <xzhipeng@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhipeng",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "xzhipeng@umich.edu"),
               person(given = "Chenkai",
                      family = "Sun",
                      role = "aut",
                      email = "sunchenk@umich.edu"),
               person(given = "Aman",
                      family = "Karunakaran",
                      role = "aut",
                      email = "akarunak@umich.edu"),
               person(given = "Quentin",
                      family = "Stout",
                      role = "aut",
                      email = "qstout@umich.edu"))
as necessary.
checkRd: (-1) reg_1d.Rd:42: Lost braces; missing escapes or markup?
    42 |         \item Metric input is not in {1,2,3}: Metric does not exist
       |                                      ^
checkRd: (-1) reg_2d.Rd:33: Lost braces; missing escapes or markup?
    33 |         \item Metric input is not in {1,2,3}: Metric does not exist
       |                                      ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Claudia Koellmann <koellmann@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Claudia",
                    family = "Koellmann",
                    role = c("aut", "cre"),
                    email = "koellmann@statistik.tu-dortmund.de")
as necessary.
Maintainer: ‘Takeshi Emura <takeshiemura@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takeshi",
                      family = "Emura",
                      role = c("aut", "cre"),
                      email = "takeshiemura@gmail.com"),
               person(given = "Wei-Chern",
                      family = "Hsu",
                      role = "aut"))
as necessary.
Maintainer: ‘Jonathan Berrisch <Jonathan@Berrisch.biz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Berrisch",
                    role = c("aut", "cre"),
                    email = "jonathan@berrisch.biz")
as necessary.
checkRd: (-1) simRedCard.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simRedCard.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘David Navarro-Gonzalez <david.navarro@urv.cat>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Pere", "Joan"),
                      family = "Ferrando",
                      role = "aut"),
               person(given = "David",
                      family = "Navarro-Gonzalez",
                      role = c("aut", "cre"),
                      email = "david.navarro@urv.cat"),
               person(given = "Urbano",
                      family = "Lorenzo-Seva",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
GC.IDX    9.755  0.001  12.928
KWON.IDX  9.008  0.000  11.545
WL.IDX    8.970  0.000  13.236
HF.IDX    8.955  0.012  11.149
KPBM.IDX  8.955  0.004  11.801
PBM.IDX   8.934  0.004  12.328
KWON2.IDX 8.926  0.003  12.832
XB.IDX    8.908  0.000  11.907
TANG.IDX  8.886  0.011  12.017
CCV.IDX   7.310  0.107  10.182
FzzyCVIs  6.191  0.008   7.847
plot_idx  5.463  0.004   7.917
WP.IDX    5.187  0.000   7.089
SH.IDX    4.873  0.008   6.089
Maintainer: ‘Marcello D'Orazio <mdo.statmatch@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcello",
                    family = "D'Orazio",
                    role = c("aut", "cre"),
                    email = "mdo.statmatch@gmail.com")
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘runm.Rd’ ‘unm_summary.R’
Maintainer: ‘Erika S. Helgeson <helge@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Erika", "S."),
                      family = "Helgeson",
                      role = c("aut", "cre"),
                      email = "helge@umn.edu"),
               person(given = "David",
                      family = "Vock",
                      role = "aut"),
               person(given = "Eric",
                      family = "Bair",
                      role = "aut"))
as necessary.
checkRd: (-1) UNPaC_Copula.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{\code{selected_features}}: {A vector of integers indicating the features retained by the feature filtering process.}
       |                                  ^
checkRd: (-1) UNPaC_Copula.Rd:60: Lost braces; missing escapes or markup?
    60 | \item{\code{sim_CI}}: {vector containing the cluster indices for each generated unimodal reference distribution}
       |                       ^
checkRd: (-1) UNPaC_Copula.Rd:61-62: Lost braces
    61 | \item{\code{pvalue_emp}}: {the empirical p-value:  the proportion of times the cluster index from the reference
       |                           ^
checkRd: (-1) UNPaC_Copula.Rd:63: Lost braces; missing escapes or markup?
    63 | \item{\code{pvalue_norm}}: {the normalized p-value: the simulated p-value based on comparison to a standard normal distribution }
       |                            ^
checkRd: (-1) UNPaC_num_clust.Rd:58-62: Lost braces
    58 | \item{\code{BestK}}: {A matrix with 1 row and 4 columns named: "Max_CI","Max_CI_wi_1SE","Max_scaled_CI" and "Max_logWCSS_wi_1SE".
       |                      ^
checkRd: (-1) UNPaC_num_clust.Rd:63-65: Lost braces
    63 | \item{\code{full_process}}: {A matrix containing the number of clusters, K, evaluated, the CI from the data, the average CI from the null
       |                             ^
checkRd: (-1) UNPaC_num_clust.Rd:66: Lost braces; missing escapes or markup?
    66 | \item{\code{selected_features}}: {A vector of integers indicating the features retained by the feature filtering process.}}
       |                                  ^
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
UNPaC_num_clust 6.457  0.022   9.068
UNPaC_Copula    4.892  0.096   7.106
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘available_version.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  UpDown.Rd: normalmixEM, mclust
  UpDownApp.Rd: shiny, ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
upset 4.701  0.126   6.122
Maintainer: ‘Yao Liu <lyao222lll@nwafu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yao",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "lyao222lll@nwafu.edu.cn")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  barplot_hp.Rd: rdacca.hp
  upset_vp.Rd: rdacca.hp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Jay",
                      family = "Jacobs",
                      role = c("aut", "cre")),
               person(given = "Drew",
                      family = "Schmidt",
                      role = "aut"),
               person(given = "Mark",
                      family = "Greenaway",
                      role = "ctb"),
               person(given = "Bob",
                      family = "Rudis",
                      role = "ctb"),
               person(given = "Alex",
                      family = "Pinto",
                      role = "ctb"),
               person(given = "Maryam",
                      family = "Khezrzadeh",
                      role = "ctb"),
               person(given = "Peter",
                      family = "Meilstrup",
                      role = "ctb"),
               person(given = c("Adam", "M."),
                      family = "Costello",
                      role = "cph"),
               person(given = "Jeff",
                      family = "Bezanson",
                      role = "cph"),
               person(given = "Peter",
                      family = "Meilstrup",
                      role = "ctb"),
               person(given = "Xueyuan",
                      family = "Jiang",
                      role = "ctb"))
as necessary.

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
checkRd: (-1) encoder.Rd:32-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) encoder.Rd:38-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) encoder.Rd:45-48: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
compose_open    4.757  0.388   6.619
compose_design  4.682  0.089   7.045
panel_shading   4.612  0.045   5.128
panel_raster    4.379  0.064   5.575
panel_new       4.346  0.013   5.914
panel_graticule 4.103  0.068   5.686
Ops.local_group 3.510  0.246   5.567
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.
Maintainer: ‘Frederick Liu <sliu85@u.rochester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frederick",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "sliu85@u.rochester.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘county_complete.Rd’ ‘fatal_police_shootings.Rd’ ‘gerrymander.Rd’
    ‘pierce_county_house_sales.Rd’ ‘pop_age_2019.Rd’ ‘pop_race_2019.Rd’
    ‘state_stats.Rd’ ‘us_temp.Rd’
Maintainer: ‘Babak Naimi <naimi.b@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Babak",
                    family = "Naimi",
                    role = c("aut", "cre"),
                    email = "naimi.b@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
doj_blog_entries   0.661  0.050   6.740
doj_press_releases 0.361  0.053  11.186
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘intersection_powerset.R’ ‘powerset_icounts.Rd’ ‘pr.R’ ‘pr.boot.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘usgas.Rd’
Maintainer: ‘Sinead E. Morris <sinead.morris@columbia.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘John Verzani <verzani@math.csi.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Verzani",
                    role = c("aut", "cre"),
                    email = "verzani@math.csi.cuny.edu")
as necessary.
checkRd: (-1) aosat.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) aosat.Rd:21: Escaped LaTeX specials: \_
checkRd: (-1) arctic.oscillations.Rd:19: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) arctic.oscillations.Rd:20: Escaped LaTeX specials: \_
checkRd: (-1) babies.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) babies.Rd:41: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:43: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) exec.pay.Rd:5: Escaped LaTeX specials: \$
checkRd: (-1) sp500.excess.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) sp500.excess.Rd:6: Escaped LaTeX specials: \&
Maintainer: ‘Paula M. Murray <paula.murray@math.mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paula", "M."),
                      family = "Murray",
                      role = c("aut", "cre"),
                      email = "paula.murray@math.mcmaster.ca"),
               person(given = c("Ryan", "P."),
                      family = "Browne",
                      role = "aut"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
uskewFA 6.154  0.003   8.046
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  usl.Rd: nlxb, nlsr
  usl.solve.nlxb.Rd: nlxb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Unexported objects imported by ':::' calls:
  ‘usmapdata:::alaska_bbox’ ‘usmapdata:::ea_crs’
  ‘usmapdata:::hawaii_bbox’ ‘usmapdata:::transform_alaska’
  ‘usmapdata:::transform_hawaii’
  See the note in ?`:::` about the use of this operator.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
plot_usmap 4.482  0.099   5.594
Maintainer: ‘Thomas B. Berrett <tom.berrett@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Thomas", "B."),
                      family = "Berrett",
                      role = c("aut", "cre"),
                      email = "tom.berrett@warwick.ac.uk"),
               person(given = "Ioannis",
                      family = "Kontoyiannis",
                      role = "aut",
                      email = "yiannis@maths.cam.ac.uk"),
               person(given = c("Richard", "J."),
                      family = "Samworth",
                      role = "aut",
                      email = "r.samworth@statslab.cam.ac.uk"))
as necessary.

The Description field contains
  <arXiv:2001.05513>, and shown to be minimax rate optimal in a wide
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Snigdhansu Chatterjee <chatt019@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Snigdhansu",
                    family = "Chatterjee",
                    role = c("aut", "cre"),
                    email = "chatt019@umn.edu")
as necessary.
Maintainer: ‘Matt Barry <mrb@softisms.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Barry",
                    role = c("aut", "cre"),
                    email = "mrb@softisms.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Antonio J. Segura <segura.antonioj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Antonio", "J."),
                    family = "Segura",
                    role = c("aut", "cre"),
                    email = "segura.antonioj@gmail.com")
as necessary.
File ‘utf8/libs/utf8.so’:
  Found ‘__vsprintf_chk’, possibly from ‘vsprintf’ (C)
    Object: ‘libcutf8lite.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘build_model.coxph.Rd’ ‘build_table.coxph.Rd’ ‘build_table.lm.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cusum_failure.Rd’ ‘cusum_loglike.Rd’ ‘cusum_ome.Rd’ ‘cusum_sprt.Rd’
    ‘paste.R’
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Peter Reichert <peter.reichert@emeriti.eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Peter", "Reichert", "with", "contributions", "by", "Nele", "Schuwirth"),
                      family = "<nele.schuwirth@eawag.ch>",
                      role = "aut",
                      email = "nele.schuwirth@eawag.ch"),
               person(given = "Peter",
                      family = "Reichert",
                      role = "cre",
                      email = "peter.reichert@emeriti.eawag.ch"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘utility-package.Rd’:
    \keyword{decision analysis; objectives hierarchy;  [TRUNCATED]
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
utility-package 3.645  0.008   5.041
Maintainer: ‘Adriano Rivolli <rivolli@utfpr.edu.br>’

The BugReports field in DESCRIPTION has
  https://github.com/rivolli/utiml
which should likely be
  https://github.com/rivolli/utiml/issues
instead.
checkRd: (-1) partition_fold.Rd:21-22: Lost braces
    21 |    \code{train}{The mldr dataset with train examples, that includes all
       |                ^
checkRd: (-1) partition_fold.Rd:23-24: Lost braces
    23 |    \code{test}{The mldr dataset with test examples, defined by the
       |               ^
checkRd: (-1) partition_fold.Rd:25-26: Lost braces
    25 |    \code{validation}{Optionally, only if \code{has.validation = TRUE}.
       |                     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  utiml.Rd: mldr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘estimate_accuracy.R’
Maintainer: ‘Ben Derrick <ben.derrick@uwe.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ben",
                    family = "Derrick",
                    role = c("aut", "cre"),
                    email = "ben.derrick@uwe.ac.uk")
as necessary.
Maintainer: ‘Zhiqiang Tan <ztan@stat.rutgers.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiqiang",
                      family = "Tan",
                      role = c("aut", "cre"),
                      email = "ztan@stat.rutgers.edu"),
               person(given = "Emilio",
                      family = "Gallicchio",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
load_uwot 3.151  0.075   5.071
umap2     1.744  0.278  14.000
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘benchmark_event.R’ ‘benchmark_event.Rd’ ‘benchmark_score.R’
    ‘benchmark_score.Rd’ ‘benchmark_time.R’
    ‘compare_means_between_groups.R’ ‘compare_means_between_groups.Rd’
    ‘compare_means_within_groups.R’ ‘compare_rates_between_groups.R’
    ‘compare_rates_between_groups.Rd’ ‘compare_rates_within_groups.R’
    ‘get_concordant_discordant_pairs.R’
    ‘get_confidence_intervals_within_groups.R’
    ‘table_observed_expected.R’ ‘test_chisq_one.R’ ‘test_chisq_one.Rd’
    ‘test_chisq_two.Rd’ ‘test_fisher.Rd’ ‘test_mcnemar.R’
    ‘test_n_1_prop.R’ ‘test_n_1_prop.Rd’ ‘test_t.R’ ‘test_t_paired.R’
Maintainer: ‘Ron Sielinski <sielinski@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ron",
                    family = "Sielinski",
                    role = c("aut", "cre"),
                    email = "sielinski@hotmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: info@vaers.org
    From: README.md
Maintainer: ‘Irucka Embry <iembry@ecoccs.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Irucka",
                    family = "Embry",
                    role = c("aut", "cre"),
                    email = "iembry@ecoccs.com")
as necessary.

Found the following (possibly) invalid file URI:
  URI: info@vaers.org
    From: README.md
Maintainer: ‘Bruna Wundervald <brunadaviesw@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bruna",
                    family = "Wundervald",
                    role = c("aut", "cre"),
                    email = "brunadaviesw@gmail.com")
as necessary.
Maintainer: ‘Han Lin Shang <hanlin.shang@anu.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_surv.Rd’
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
joint_ms_start_val 7.513  0.298   5.575
joint_ms_lb        7.366  0.316   5.002
joint_ms_va_par    7.488  0.183   4.889
joint_ms_format    7.375  0.233   5.004
Maintainer: ‘Sean Wen <sean.wenwx@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sean",
                    family = "Wen",
                    role = c("aut", "cre"),
                    email = "sean.wenwx@gmail.com")
as necessary.
Maintainer: ‘Corey Runkel <runkelcorey@gmail.com>’

The URL field contains the following bad parts:
  runkelcorey.github.io/valet
The URL field should be a list of URLs separated by commas or
whitespace.
Maintainer: ‘Christopher Belanger <christopher.a.belanger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Belanger",
                    role = c("aut", "cre"),
                    email = "christopher.a.belanger@gmail.com")
as necessary.
Maintainer: ‘Greer B. Humphrey <greer.humphrey@student.adelaide.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘ar9.Rd’:
    http://dx.doi.org/10.1016/S0022-1694(00)00346-2
  File ‘validann.Rd’:
    http://dx.doi.org/10.1016/j.envsoft.2006.06.008
    http://dx.doi.org/10.1016/j.ecolmodel.2004.03.013
    http://dx.doi.org/10.1016/S0304-3800(02)00257-0
    http://dx.doi.org/10.1109/ijcnn.2006.247166
    http://dx.doi.org/10.5194/hess-17-2827-2013
Found the following files/directories:
  ‘PredValidationPlots.pdf’ ‘RepStructValidationPlots.pdf’
checkRd: (-1) sendTasks.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sendTasks.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  detect_boundary_cat.Rd: validator
  detect_boundary_num.Rd: validator
  detect_fixed_variables.Rd: validator
  detect_infeasible_rules.Rd: validator
  detect_redundancy.Rd: validator
  is_contradicted_by.Rd: validator
  is_implied_by.Rd: validator
  is_linear.Rd: validator
  make_feasible.Rd: validator
  remove_redundancy.Rd: validator
  simplify_conditional.Rd: validator
  simplify_fixed_variables.Rd: validator
  simplify_rules.Rd: validator
  validatetools.Rd: validate
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Benjamin Hivert <benjamin.hivert@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Benjamin",
                    family = "Hivert",
                    role = c("aut", "cre"),
                    email = "benjamin.hivert@u-bordeaux.fr")
as necessary.

The Description field contains
  practical considerations", <arXiv:2210.13172>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Clay Ford <joe.clayton.ford@gmail.com>’

The Description field contains
  were downloaded from https://www.valottery.com/.
Please enclose URLs in angle brackets (<...>).
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
valuatePortfolio 5.170  0.003   6.484
buildCurve       4.706  0.055   5.996
Maintainer: ‘H. Robert Frost <rob.frost@dartmouth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("H.", "Robert"),
                    family = "Frost",
                    role = c("aut", "cre"),
                    email = "rob.frost@dartmouth.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
VAMForSeurat 6.073  0.267   8.006
Maintainer: ‘Jens von Bergmann <jens@mountainmath.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jens",
                    family = "von Bergmann",
                    role = c("aut", "cre"),
                    email = "jens@mountainmath.ca")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘datasets.R’
Maintainer: ‘Guo Yu <gy63@cornell.edu>’

The Description field contains
  Bien (2016) and is available at <https://arxiv.org/abs/1604.07451>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) sample_gen.Rd:18: Lost braces; missing escapes or markup?
    18 | Generate \code{n} random samples from multivariate Gaussian distribution N(0, (L^TL)^{-1})
       |                                                                                      ^
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
varband_cv 8.405  0.002   9.347
Maintainer: ‘Daniel Safai <danielsafai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Safai",
                    role = c("aut", "cre"),
                    email = "danielsafai@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
varbvsmix 5.391  0.016     6.4
Maintainer: ‘Piotr Sobczyk <pj.sobczyk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Piotr",
                      family = "Sobczyk",
                      role = c("aut", "cre"),
                      email = "pj.sobczyk@gmail.com"),
               person(given = "Stanislaw",
                      family = "Wilczynski",
                      role = "aut"),
               person(given = "Julie",
                      family = "Josse",
                      role = "aut"),
               person(given = "Malgorzata",
                      family = "Bogdan",
                      role = "aut"))
as necessary.
Maintainer: ‘Edzer Pebesma <edzer.pebesma@uni-muenster.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ernst",
                      family = "Glatzer",
                      role = "aut",
                      email = "ernst.glatzer@wu-wien.ac.at"),
               person(given = "Edzer",
                      family = "Pebesma",
                      role = "cre",
                      email = "edzer.pebesma@uni-muenster.de"))
as necessary.
Maintainer: ‘Martins Liberts <martins.liberts@csb.gov.lv>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘lingini2.Rd’:
    http://dx.doi.org/10.1007/BF03263549
  File ‘varpoord.Rd’:
    http://dx.doi.org/10.1007/BF03263549
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) vardannual.Rd:97: Lost braces
    97 | \item{ID_level2}{Optional}{variable for unit ID codes. One dimensional object convertible to one-column \code{data.table} or variable name as character, column number.}
       |                           ^
checkRd: (-1) vardannual.Rd:99: Lost braces
    99 | \item{dataset}{Optional}{survey data object convertible to \code{data.table}.}
       |                         ^
checkRd: (-1) vardcrospoor.Rd:122: Lost braces
   122 | \item{ind_gr}{Optional}{variable by which divided independently X matrix of the auxiliary variables for the calibration. One dimensional object convertible to one-column \code{data.table} or variable name as character, column number.}
       |                        ^
checkRd: (-1) vardcrospoor.Rd:124: Lost braces
   124 | \item{use.estVar}{Logical}{value. If value is \code{TRUE}, then \code{R} function \code{estVar} is used for the  estimation of covariance matrix of the residuals. If value is \code{FALSE}, then \code{R} function \code{estVar} is not used for the estimation of covariance matrix of the residuals.}
       |                           ^
checkRd: (-1) vardom_othstr.Rd:69: Lost braces
    69 | \item{percentratio}{Positive}{numeric value. All linearized variables are multiplied with \code{percentratio} value, by default - 1.}
       |                              ^
checkRd: (-1) varpoord.Rd:121: Lost braces
   121 | \item{month_at_work}{Variable}{for total number of month at work (sum of the number of months spent at full-time work as employee, number of months spent at part-time work as employee, number of months spent at full-time work as self-employed (including family worker), number of months spent at part-time work as self-employed (including family worker)).  One dimensional object convertible to one-column \code{data.table} or variable name as character, column number.}
       |                               ^
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
vardcrospoor 6.955    0.3   3.275
Maintainer: ‘Wenlin Dai <wenlin.dai@kaust.edu.sa>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wenlin",
                      family = "Dai",
                      role = c("aut", "cre"),
                      email = "wenlin.dai@kaust.edu.sa"),
               person(given = "Tiejun",
                      family = "Tong.",
                      role = "aut",
                      email = "tongt@hkbu.edu.sa"))
as necessary.
checkRd: (-1) betaburr.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Burr distribution due to Parana\'{i}ba et al. (2011) given by
       |                                                                                                                        ^
checkRd: (-1) betafrechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Fr\'{e}chet distribution due to Barreto-Souza et al. (2011) given by
       |                                                                                           ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                      ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                                                      ^
checkRd: (-1) kumburr7.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Kumaraswamy Burr XII distribution due to Parana\'{i}ba et al. (2013) given by
       |                                                                                                                                   ^
Maintainer: ‘Sayanti Guha Majumdar <sayanti23gm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sayanti", "Guha"),
                      family = "Majumdar",
                      role = c("aut", "cre"),
                      email = "sayanti23gm@gmail.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = c("Dwijesh", "Chandra"),
                      family = "Mishra",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
ensemble 4.189  0.084   5.511
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jae.", "H."),
                      family = "Kim",
                      role = "aut"),
               person(given = c("Jae", "H."),
                      family = "Kim",
                      role = "cre",
                      email = "jaekim8080@gmail.com"))
as necessary.
checkRd: (-1) simulateDCSIS.Rd:40: Lost braces
    40 |        Y = 6*X1 + 1.5*X2  + 9*1{X12 < 0} + exp(2*X22)*e
       |                                ^
checkRd: (-1) simulateDCSIS.Rd:42: Lost braces
    42 |        Y = 6*X1 + 1.5*X2  + 9*1{X12 < 0} + 6*X22 + e
       |                                ^
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
screenVCM   4.434  0.015   5.439
simulateVCM 3.852  0.030   5.585
Maintainer: ‘David Scott <d.scott@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Scott",
                      role = c("aut", "cre"),
                      email = "d.scott@auckland.ac.nz"),
               person(given = c("Christine", "Yang"),
                      family = "Dong",
                      role = "aut",
                      email = "c.dong@auckland.ac.nz"))
as necessary.
Maintainer: ‘Joshua F. Wiley <josh@elkhartgroup.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joshua", "F."),
                      family = "Wiley",
                      role = c("aut", "cre"),
                      email = "josh@elkhartgroup.com"),
               person(given = c("Elkhart", "Group"),
                      family = "Limited",
                      role = "cph"))
as necessary.
Maintainer: ‘Craig Wang <craig.wang@math.uzh.ch>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) get.miniseq.sample.files.Rd:15: Lost braces
    15 | \item{file.suffix}{Regex expression for end of file name. For example, `file.suffix = '_S\\d{1,2}_.*_R1_.*'` will match R1 files.1 files.}
       |                                                                                             ^
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
sim.InnerCV 5.099  1.396   8.578
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
seVarReg   6.132  0.008   7.227
plotVarReg 5.330  0.001   8.641
semiVarReg 4.938  0.004   6.182
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
BACKWARD_EXPOSURE 8.522  0.017  12.953
STEPWISE_EXPOSURE 7.919  0.000  11.404
FORWARD_EXPOSURE  7.866  0.008  11.112
Maintainer: ‘Mohammed Sedki <mohammed.sedki@u-psud.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Marbac",
                      role = "aut"),
               person(given = "Mohammed",
                      family = "Sedki",
                      role = c("aut", "cre"),
                      email = "mohammed.sedki@u-psud.fr"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Michele Dalponte <michele.dalponte@fmach.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michele",
                      family = "Dalponte",
                      role = c("aut", "cre"),
                      email = "michele.dalponte@fmach.it"),
               person(given = c("Hans", "Ole"),
                      family = "Oerka",
                      role = "aut"))
as necessary.
Maintainer: ‘Ramon Diaz-Uriarte <rdiaz02@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ramon",
                    family = "Diaz-Uriarte",
                    role = c("aut", "cre"),
                    email = "rdiaz02@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) randomVarImpsRFplot.Rd:97: Escaped LaTeX specials: \&
checkRd: (-1) varSelImpSpecRF.Rd:83: Escaped LaTeX specials: \&
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
selProbPlot 8.09  0.003    9.99
checkRd: (-1) Acoef_sh.Rd:23: Lost braces; missing escapes or markup?
    23 | The function returns the K-by-K matrices {A_1, ..., A_p} as a list object.
       |                                          ^
checkRd: (-1) VARshrink.Rd:58: Lost braces; missing escapes or markup?
    58 | Consider VAR(p) model: y_t = A_1 y_{t-1} + ... + A_p y_{t-p} + C d_t + e_t,
       |                                    ^
checkRd: (-1) VARshrink.Rd:58: Lost braces; missing escapes or markup?
    58 | Consider VAR(p) model: y_t = A_1 y_{t-1} + ... + A_p y_{t-p} + C d_t + e_t,
       |                                                        ^
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
calcSSE_Acoef 5.817  0.011   6.345
Maintainer: ‘WenSui Liu <liuwensui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "WenSui",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwensui@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Jiehuan Sun <jiehuan.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiehuan",
                    family = "Sun",
                    role = c("aut", "cre"),
                    email = "jiehuan.sun@gmail.com")
as necessary.
Maintainer: ‘Michael Salter-Townshend <mike.saltertownshend@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Salter-Townshend",
                    role = c("aut", "cre"),
                    email = "mike.saltertownshend@gmail.com")
as necessary.
Maintainer: ‘Bo (Yu-Chien) Ning <bo.ning@upmc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bo",
                      family = "Ning",
                      role = "aut",
                      comment = "Yu-Chien"),
               person(given = "Bo",
                      family = "Ning",
                      role = "cre",
                      email = "bo.ning@upmc.fr",
                      comment = "Yu-Chien"))
as necessary.

The Description field contains
  proposed by Ning (2020) <arXiv:2102.00305>. There are two algorithms:
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
spca.cavi.Laplace 4.776  0.004   5.222
checkRd: (-1) decomposition.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |      ^
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |          ^
checkRd: (-1) moving.estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘vineCopulas.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BB1Copula-class.Rd: VineCopula-package, joeCopula-class
  BB1Copula.Rd: joeCopula, VineCopula-package
  BB6Copula-class.Rd: VineCopula-package, joeCopula-class
  BB6Copula.Rd: joeCopula, VineCopula-package
  BB7Copula-class.Rd: VineCopula-package, joeCopula-class
  BB7Copula.Rd: joeCopula, VineCopula-package
  BB8Copula-class.Rd: VineCopula-package, joeCopula-class
  BB8Copula.Rd: joeCopula, VineCopula-package
  BiCop2copula.Rd: copula-class, VineCopula-package, BiCop
  ddCopula.Rd: dCopula, pCopula
  joeBiCopula-class.Rd: VineCopula-package, copula-package,
    joeCopula-class
  joeBiCopula.Rd: copula-package, joeCopula-class, VineCopula-package
  surClaytonCopula-class.Rd: VineCopula-package
  surClaytonCopula.Rd: VineCopula-package
  surGumbelCopula-class.Rd: VineCopula-package
  surGumbelCopula.Rd: VineCopula-package
  tawnT1Copula-class.Rd: VineCopula-package
  tawnT1Copula.Rd: VineCopula-package
  tawnT2Copula-class.Rd: VineCopula-package
  tawnT2Copula.Rd: VineCopula-package
  vineCopula-class.Rd: VineCopula-package, RVineMatrix
  vineCopula.Rd: RVineMatrix, VineCopula-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andre",
                      family = "Schuetzenmeister",
                      role = c("aut", "cre"),
                      email = "andre.schuetzenmeister@roche.com"),
               person(given = "Florian",
                      family = "Dufey",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  lmerMatrices.Rd: lmer
  lmerSummary.Rd: lmer
  remlMM.Rd: lmer
  remlVCA.Rd: lmer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael Friendly <friendly@yorku.ca>’

The BugReports field in DESCRIPTION has
  https://github.com/friendly/vcdExtra
which should likely be
  https://github.com/friendly/vcdExtra/issues
instead.
checkRd: (-1) datasets.Rd:15: Lost braces
    15 | and dimension information (\code{dim} or code{length}) of each item,
       |                                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mcaplot.Rd: multilines
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
pairs.table 5.18  0.003   7.225
Maintainer: ‘Michael Chirico <MichaelChirico4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Chirico",
                    role = c("aut", "cre"),
                    email = "michaelchirico4@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
minque 6.363      0   7.975
vcpen  5.384      0   5.900
Author field differs from that derived from Authors@R
  Author:    ‘Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [aut] (<https://orcid.org/0000-0003-2542-2202>), Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>), Daniel Possenriede [aut] (<https://orcid.org/0000-0002-6738-9845>), rOpenSci [fnd] (019jywm96)’
  Authors@R: ‘Scott Chamberlain [aut, cre] (ORCID: <https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [aut] (ORCID: <https://orcid.org/0000-0003-2542-2202>), Maëlle Salmon [aut] (ORCID: <https://orcid.org/0000-0002-2815-0399>), Daniel Possenriede [aut] (ORCID: <https://orcid.org/0000-0002-6738-9845>), rOpenSci [fnd] (ROR: <https://ror.org/019jywm96>)’
File ‘vctrs/libs/vctrs.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘IS_S4_OBJECT’,
    ‘LEVELS’, ‘OBJECT’, ‘PRENV’, ‘PRVALUE’, ‘R_PromiseExpr’,
    ‘Rf_allocSExp’, ‘Rf_findVarInFrame3’, ‘SETLENGTH’, ‘SET_BODY’,
    ‘SET_CLOENV’, ‘SET_ENCLOS’, ‘SET_FORMALS’, ‘SET_GROWABLE_BIT’,
    ‘SET_S4_OBJECT’, ‘SET_TRUELENGTH’, ‘STDVEC_DATAPTR’, ‘STRING_PTR’,
    ‘TRUELENGTH’, ‘UNSET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Anne Le Maitre <anne.le.maitre@univie.ac.at>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘Tropheus.IK.coord.Rd’:
    https://doi.org/10.1038/hdy.2013.78
    https://doi.org/10.5061/dryad.fc02f
  File ‘Tropheus.Rd’:
    https://doi.org/10.5061/dryad.fc02f
    https://doi.org/10.1038/hdy.2013.78
  File ‘relative.eigen.Rd’:
    https://doi.org/10.1007/s11692-013-9260-5
Maintainer: ‘Cody Moore <Jumper9400@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cody",
                    family = "Moore",
                    role = c("aut", "cre"),
                    email = "jumper9400@gmail.com")
as necessary.
Maintainer: ‘Solveig Pospiech <s.pospiech@hzdr.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Solveig",
                    family = "Pospiech",
                    role = c("aut", "cre"),
                    email = "s.pospiech@hzdr.de")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.spv.Rd: stat_binhex, grid.arrange, ggplot
  vdg-package.Rd: theme
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Maintainer: ‘Alexander Yermanos <ayermanos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Yermanos",
                    role = c("aut", "cre"),
                    email = "ayermanos@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
vd_fit 4.557  0.114   5.954
ffvd   4.589  0.070   5.978
Maintainer: ‘Lu Tian <lutian@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ramon",
                      family = "Durazo-Arvizu",
                      role = "aut"),
               person(given = "Chris",
                      family = "Sempos",
                      role = "aut"),
               person(given = "Lu",
                      family = "Tian",
                      role = c("aut", "cre"),
                      email = "lutian@stanford.edu"))
as necessary.
Maintainer: ‘German Carrillo <geotux_tuxman@linuxmail.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "German",
                    family = "Carrillo",
                    role = c("aut", "cre"),
                    email = "geotux_tuxman@linuxmail.org")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  applyTransformation.Rd: sp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
estimate_gps 6.793  0.392   8.865
Maintainer: ‘Tunc Oygur <info@tuncoygur.com.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tunc",
                      family = "Oygur",
                      role = c("aut", "cre"),
                      email = "info@tuncoygur.com.tr"),
               person(given = "Gazanfer",
                      family = "Unal",
                      role = "aut"),
               person(given = c("Tarik", "C."),
                      family = "Gouhier",
                      role = "ctb"),
               person(given = "Aslak",
                      family = "Grinsted",
                      role = "ctb"),
               person(given = "Viliam",
                      family = "Simko",
                      role = "ctb"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_pfi.Rd’ ‘plot_pc_directions.Rd’ ‘prep_testing_data.Rd’
    ‘prep_training_data.Rd’
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
compute_pfi        7.484  0.152   9.742
plot_pc_directions 5.413  0.025   7.367
prep_testing_data  5.163  0.003   6.621
prep_training_data 4.714  0.008   6.188
Maintainer: ‘Bob Rudis <bob@rudis.net>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Miquel De Cáceres <miquelcaceres@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Florian Jansen <florian.jansen@uni-rostock.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Florian",
                    family = "Jansen",
                    role = c("aut", "cre"),
                    email = "florian.jansen@uni-rostock.de")
as necessary.
Maintainer: ‘Robert Nuske <robert.nuske@mailbox.org>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  count_taxa.Rd: taxlist-class
  make_cocktail.Rd: taxlist-class
  subset.Rd: taxlist-class
  summary.Rd: taxlist-class
  tv2vegtable.Rd: taxlist-class, read.dbf
  used_synonyms.Rd: get_children, get_parents, taxlist-class,
    accepted_name
  vegtable-class.Rd: taxlist-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Andrew A Zaffos <azaffos@email.arizona.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andrew", "A."),
                      family = "Zaffos",
                      role = "aut"),
               person(given = c("Andrew", "A"),
                      family = "Zaffos",
                      role = "cre",
                      email = "azaffos@email.arizona.edu"))
as necessary.
checkRd: (-1) additiveBeta.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:33: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Paul Boutros <pboutros@mednet.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanbo",
                      family = "Chen",
                      role = "aut"),
               person(given = "Paul",
                      family = "Boutros",
                      role = "cre",
                      email = "pboutros@mednet.ucla.edu"))
as necessary.
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lee",
                      family = "Wilkinson",
                      role = "aut",
                      email = "leland.wilkinson@gmail.com"),
               person(given = "Simon",
                      family = "Urbanek",
                      role = "cre",
                      email = "simon.urbanek@r-project.org"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
vennplot 6.688  0.064   8.231
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
venn 4.129  0.133   5.313
Maintainer: ‘Conor Neilson <condwanaland@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Conor",
                    family = "Neilson",
                    role = c("aut", "cre"),
                    email = "condwanaland@gmail.com")
as necessary.
Maintainer: ‘Nick Golding <nick.golding.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Golding",
                    role = c("aut", "cre"),
                    email = "nick.golding.research@gmail.com")
as necessary.
File ‘versus/libs/versus.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Rishabh Singh<rishabhsinghrsg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rishabh",
                    family = "Singh",
                    role = c("aut", "cre"),
                    email = "rishabhsinghrsg@gmail.com")
as necessary.
Maintainer: ‘Javier Leiva Cuadrado <jleivacuadrado@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Javier", "Leiva"),
                    family = "Cuadrado",
                    role = c("aut", "cre"),
                    email = "jleivacuadrado@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  blobness3D.Rd: nifti
  gradient3D.Rd: nifti
  hessian3D.Rd: nifti
  vesselness3D.Rd: nifti
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
vetiver_compute_metrics 4.526  0.353    6.07
checkRd: (-1) ex121.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex124.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex125.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex127.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex32.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex33.Rd:18: Escaped LaTeX specials: \&
File ‘vetr/libs/vetr.so’:
  Found non-API calls to R: ‘ENCLOS’, ‘FORMALS’, ‘IS_S4_OBJECT’,
    ‘R_lsInternal’, ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

The Description field contains
  M. (2021) <arXiv:2102.13103> .
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dian Li <lidian@zju.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tobias",
                      family = "Elze",
                      role = "aut"),
               person(given = "Dian",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "lidian@zju.edu.cn",
                      comment = "documentation"),
               person(given = c("Eun", "Young"),
                      family = "Choi",
                      role = "aut",
                      comment = "QC"))
as necessary.
Maintainer: ‘Sarah Goslee <Sarah.Goslee@ars.usda.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
trinormalCovff 5.232   0.03   5.275
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
ENc.values 3.97  0.117   5.904
Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arnaud",
                    family = "Le Rouzic",
                    role = c("aut", "cre"),
                    email = "arnaud.le-rouzic@universite-paris-saclay.fr")
as necessary.
Maintainer: ‘Adam T. Kocsis <adam.t.kocsis@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/adamkocsis/via
which should likely be
  https://github.com/adamkocsis/via/issues
instead.
checkRd: (-1) VirtualArray-single-bracket-method.Rd:6: Lost braces
     6 | \title{Indexing to extract subsets of a 'code{\link[via:XArray-class]{VirtualArray}}'-class object}
       |                                              ^
checkRd: (-1) subset.Rd:20: Lost braces
    20 | \item{drop}{\code{logical} in case the result of subsetting is a single element, should the \\code{\link[via:XArray-class]{VirtualArray}} wrapper be dropped?}
       |                                                                                                   ^
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
RasterArray-class 7.357  0.093   9.189
checkRd: (-1) vic_param.Rd:311: Lost braces
   311 | albedo must be supplied in code{forcing_veg}. Default = 1.}
       |                                ^
checkRd: (-1) vic_param.Rd:323: Lost braces
   323 | supplied in code{forcing_veg}. Default = 1.}
       |                 ^
checkRd: (-1) vic_param.Rd:341: Lost braces
   341 | be supplied in code{forcing_veg} Default = 0.}
       |                    ^
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
vic 4.763  0.028   7.253
Maintainer: ‘Donald Williams <drwwilliams@ucdavis.edu>’

The Description field contains
  variance in a one-way random effects model <10.31234/osf.io/hpq7w>.
Please write DOIs as <doi:prefix/suffix>.
checkRd: (-1) vietnamcode.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:16: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘functions_upload.R’ ‘mod_hidecan.R’
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
vigi_routine 6.224  0.033   7.497
Maintainer: ‘Joseph de Vilmarest <joseph.de-vilmarest@vikingconseil.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "de Vilmarest",
                    role = c("aut", "cre"),
                    email = "joseph.de-vilmarest@vikingconseil.fr",
                    comment = c(ORCID = "0000-0002-0634-8484"))
as necessary.
Maintainer: ‘Zhicheng Du <dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zhicheng",
                    family = "Du",
                    role = c("aut", "cre"),
                    email = "dgdzc@hotmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bootstrap_se.Rd: boot
  cv_vim.Rd: boot
  vim.Rd: boot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
calc_vimps 5.147   0.61   9.247
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  regressionImp.Rd: lmrob, glmrob
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
pairs.copuladata 5.641      0   7.111
Maintainer: ‘Jefferson Paril <jeffersonparil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jefferson",
                    family = "Paril",
                    role = c("aut", "cre"),
                    email = "jeffersonparil@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Scott Sherrill-Mix <ssm@msu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Scott",
                      family = "Sherrill-Mix",
                      role = c("aut", "cre"),
                      email = "ssm@msu.edu"),
               person(given = "Erik",
                      family = "Clarke",
                      role = "aut"))
as necessary.
Maintainer: ‘Brandon M. Greenwell <greenwell.brandon@gmail.com>’

The Description field contains
  described in Greenwell et al. (2018) <arXiv:1805.04755>. A
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘knn_domain_score.R’ ‘knn_domain_score.Rd’ ‘mars_domain_score.R’
    ‘mars_domain_score.Rd’ ‘nn_domain_score.R’ ‘nn_domain_score.Rd’
    ‘normalized_domain_plot.R’ ‘normalized_domain_plot.Rd’
    ‘rf_domain_score.R’ ‘simple_domain_plot.R’ ‘simple_domain_plot.Rd’
Maintainer: ‘Juan Pablo Acuña González <22253567@uagro.mx>’

The Description field contains
  <arXiv:2009.13248>. It aims to facilitate interpretable and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘glob_cr_vis.Rd’ ‘glob_cub_vis.R’ ‘glob_knn_vis.R’ ‘glob_knn_vis.Rd’
    ‘glob_nn_vis.R’ ‘glob_nn_vis.Rd’ ‘viralx_knn.R’ ‘viralx_knn_glob.R’
    ‘viralx_knn_glob.Rd’ ‘viralx_knn_shap.R’ ‘viralx_knn_vis.R’
    ‘viralx_mars.R’ ‘viralx_mars.Rd’ ‘viralx_mars_shap.R’
    ‘viralx_mars_shap.Rd’ ‘viralx_mars_vis.R’ ‘viralx_mars_vis.Rd’
    ‘viralx_nn.R’ ‘viralx_nn.Rd’ ‘viralx_nn_glob.R’ ‘viralx_nn_glob.Rd’
    ‘viralx_nn_shap.R’ ‘viralx_nn_shap.Rd’ ‘viralx_nn_vis.R’
    ‘viralx_nn_vis.Rd’
Maintainer: ‘Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Ranjit", "Kumar"),
                      family = "Paul",
                      role = c("aut", "cre"),
                      email = "ranjitstat@gmail.com"),
               person(given = c("Mr.", "Ankit"),
                      family = "Tanwar",
                      role = "aut"))
as necessary.

The Description field contains
  <doi.org/10.1016/j.eneco.2012.03.003>.
Please write DOIs as <doi:prefix/suffix>.
checkRd: (-1) viridis.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:24-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:31-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:45: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
scale_viridis 4.401  0.196   5.069
checkRd: (-1) simulatePopulation.Rd:75: Lost braces; missing escapes or markup?
    75 |   \item \strong{Pollen productivity}: In each time step the model computes the pollen productivity (in relative values) of the population using the equation \eqn{P_{t} = \sum x_{it} \times max(S_{t}, B)}, where \emph{t} is time (a given simulation time step), \emph{P} is the pollen productivity of the population at a given time, \emph{x_{i}} represents the biomass of every adult individual, \emph{S} is the environmental suitability at the given time, \emph{B} is the contribution of biomass to pollen productivity regardless of environmental suitability (\emph{pollen.control} parameter in the simulation, 0 by default). If \emph{B} equals 1, \emph{P} is equal to the total biomass sum of the adult population, regardless of the environmental suitability. If \emph{B} equals 0, pollen productivity depends entirely on environmental suitability values.
       |                                                                                                                                                                                                                                                                                                                                                    ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  parametersCheck.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
GetGenerations 4.106  0.079   5.138
Maintainer: ‘Boris Leroy <leroy.boris@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Boris",
                      family = "Leroy",
                      role = c("cre", "aut"),
                      email = "leroy.boris@gmail.com"),
               person(given = c("Christine", "N."),
                      family = "Meynard",
                      role = "ctb"),
               person(given = "Celine",
                      family = "Bellard",
                      role = "ctb"),
               person(given = "Franck",
                      family = "Courchamp",
                      role = "ctb"),
               person(given = "Robin",
                      family = "Delsol",
                      role = "ctb"),
               person(given = "Willson",
                      family = "Gaul",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  virtualspecies-package.Rd: terra, ade4, rnaturalearth
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
convertToPA       7.245  0.187   9.678
generateSpFromPCA 4.532  0.055   6.050
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
VhgIdenFacetedScatterPlot 3.527  0.061   6.083
VhgBoxplot                3.408  0.056   5.580
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
visa.est 12.903  1.146   6.963
checkRd: (-1) compdesc.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
VisCov 8.476  0.152  12.756
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) ViSiElse.Rd:101-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:104: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:105-106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:108-127: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:112-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:114-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:116: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:128-134: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:135-147: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:148-157: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:152-153: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:154-155: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dim-ViSibook-methods.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dim-ViSibook-methods.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary-ViSigrid-methods.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary-ViSigrid-methods.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
ViSiElse 4.398  0.181   5.771
Maintainer: ‘Chenguang Wang <cwang68@jhmi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zilu",
                      family = "Wang",
                      role = c("cph", "aut"),
                      comment = "tools/make_cpp.R, R/stanmodels.R"),
               person(given = "Chenguang",
                      family = "Wang",
                      role = "cre",
                      email = "cwang68@jhmi.edu"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
vtSimu 3.814  0.072    5.67
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  visSave.Rd: saveWidget
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Patrick Breheny <patrick-breheny@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patrick",
                      family = "Breheny",
                      role = c("aut", "cre"),
                      email = "patrick-breheny@uiowa.edu"),
               person(given = "Woodrow",
                      family = "Burchett",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘vistla/libs/vistla.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcelo",
                    family = "Ponce",
                    role = c("aut", "cre"),
                    email = "m.ponce@utoronto.ca")
as necessary.
Maintainer: ‘David J. Sharrow <dsharrow@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gregor",
                      family = "Passolt",
                      role = "aut"),
               person(given = c("James", "J."),
                      family = "Anderson",
                      role = "aut"),
               person(given = "Ting",
                      family = "Li",
                      role = "aut"),
               person(given = c("David", "H."),
                      family = "Salinger",
                      role = "aut"),
               person(given = c("David", "J."),
                      family = "Sharrow",
                      role = c("aut", "cre"),
                      email = "dsharrow@uw.edu"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
make_sd 6.131  0.078   7.106
FDM     5.239  0.455   6.557
undo_sd 4.895  0.116   6.390
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
NTA 5.616  0.003   7.497
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
pdpPairs 6.862  0.158   7.993
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
OZrain 4.513  0.157    7.49
Specified C++11: please drop specification unless essential
Examples with CPU time > 2.5 times elapsed time
     user system elapsed ratio
vmd 1.114   0.05   0.461 2.525
checkRd: (-1) getTurnType.Rd:38: Lost braces; missing escapes or markup?
    38 | Return one of {Vocalisation, GrpVocalisation, ...} or identifier.
       |               ^
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
preprocess      5.911  0.094   7.636
comparisonPlots 5.148  0.114   6.320
File ‘volesti/libs/volesti.so’:
  Found ‘exit’, possibly from ‘exit’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘printf’, possibly from ‘printf’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘putchar’, possibly from ‘putchar’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘sprintf’, possibly from ‘sprintf’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘vsprintf’, possibly from ‘vsprintf’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Carlo Pacioni <C.Pacioni@Murdoch.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘campbell.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
  File ‘pac.clas.Nadults.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.clas.Ne.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.clas.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.clas.lookup.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.clas.pairw.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.lhs.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.run.lhs.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pac.yr.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘pacioni.Rd’:
    https://doi.org/10.1071/PC17002
  File ‘sta.evy5.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
  File ‘sta.evy5.b11.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
  File ‘sta.main.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
  File ‘vortexRdata.Rd’:
    https://dx.doi.org/10.1080/14486563.2015.1028486
    https://doi.org/10.1071/PC17002
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    vortexRdata pre-1.0.3
Maintainer: ‘Bryan Gertzel <bryan.gertzel@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bryan",
                      family = "Gertzel",
                      role = c("aut", "cre"),
                      email = "bryan.gertzel@anu.edu.au"),
               person(given = "Robert",
                      family = "Ackland",
                      role = "aut"))
as necessary.
Unknown package ‘rtweet’ in Rd xrefs
Maintainer: ‘Pavel V. Moskalev <moskalefff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pavel", "V."),
                    family = "Moskalev",
                    role = c("aut", "cre"),
                    email = "moskalefff@gmail.com")
as necessary.
Maintainer: ‘Michael Gampmayer <michael.gampmayer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Gampmayer",
                    role = c("aut", "cre"),
                    email = "michael.gampmayer@gmail.com")
as necessary.
Maintainer: ‘Tyler Kendall <tsk@uoregon.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tyler",
                      family = "Kendall",
                      role = c("aut", "cre"),
                      email = "tsk@uoregon.edu"),
               person(given = c("Erik", "R."),
                      family = "Thomas",
                      role = "aut"))
as necessary.
checkRd: (-1) compute.means.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) norm.wattfabricius.Rd:5: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
filled_voxel_cloud  16.828  1.086   8.799
plot_projection     10.179  0.212  13.889
distance_clustering  4.993  0.656   5.340
Maintainer: ‘Ron Keizer <ronkeizer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ron",
                    family = "Keizer",
                    role = c("aut", "cre"),
                    email = "ronkeizer@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ctd_cast.Rd: ctdFindProfiles
  vpr_manual_classification.Rd: image_scale
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘vroom/libs/vroom.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘SETLENGTH’, ‘SET_TRUELENGTH’,
    ‘STDVEC_DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jae", "H."),
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jaekim8080@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
Subsample.test 5.528  0.028   6.917
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  vscc.Rd: teigen, Mclust
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
plot.vscc    9.438  0.015  10.823
summary.vscc 9.295  0.003  11.250
print.vscc   9.280  0.004  10.889
vscc         9.168  0.004  11.006
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  vsd.Rd: ggplot2, Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
    user system elapsed
vsd 5.98  0.544   7.389
Maintainer: ‘Philippe Regnault <philipperegnault@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Justine",
                      family = "Lequesne",
                      role = "aut"),
               person(given = "Philippe",
                      family = "Regnault",
                      role = c("aut", "cre"),
                      email = "philipperegnault@hotmail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  VSOLassoBag.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
plot_varimax_z_pairs 6.71  0.079   7.841
Maintainer: ‘Karolina Klockmann <karolina.klockmann@gmx.de>’

The Description field contains
  (Klockmann, Krivobokova; 2023), <arXiv:2303.10018>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) Data-Examples.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aquaporin.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vsts_create_release.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vsts_create_release.Rd:34: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  VSURF.Rd: randomForest
  VSURF_interp.Rd: randomForest
  VSURF_pred.Rd: randomForest
  VSURF_thres.Rd: randomForest
  predict.VSURF.Rd: randomForest, predict.randomForest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
Sequential2Means     4.048  0.012   7.675
Sequential2MeansBeta 3.220  0.022   6.382
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Andreas Schulz <ades-s@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andreas",
                      family = "Schulz",
                      role = "cre",
                      email = "ades-s@web.de"),
               person(family = "PhD",
                      role = c("aut", "cre")))
as necessary.
Maintainer: ‘Csaba Farago <farago@inf.u-szeged.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Csaba",
                    family = "Farago",
                    role = c("aut", "cre"),
                    email = "farago@inf.u-szeged.hu")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Ronan Trépos <ronan.trepos@inrae.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Allard",
                      role = c("aut", "cre")),
               person(given = "Ronan",
                      family = "Trépos",
                      role = c("aut", "cre"),
                      email = "ronan.trepos@inrae.fr"))
as necessary.
checkRd: (-1) WACS.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACSreadAgroclim.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WACSreadAgroclim.Rd:16-17: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Tyler Rinker <tyler.rinker@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
walker_glm 3.627  0.007   5.082
Maintainer: ‘John Whalen <whalenjf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Whalen",
                    role = c("aut", "cre"),
                    email = "whalenjf@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘walkscore.R’
Maintainer: ‘Paul F. Blanche <paulfblanche@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paul", "F"),
                      family = "Blanche",
                      role = "aut",
                      email = "paulfblanche@gmail.com"),
               person(given = c("Thomas", "A."),
                      family = "Gerds",
                      role = "aut",
                      email = "tag@biostat.ku.dk"),
               person(given = c("Paul", "F."),
                      family = "Blanche",
                      role = "cre",
                      email = "paulfblanche@gmail.com"))
as necessary.
Maintainer: ‘Jonathon Love <jon@thon.cc>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathon",
                      family = "Love",
                      role = c("aut", "cre"),
                      email = "jon@thon.cc"),
               person(given = "Patrick",
                      family = "Mair",
                      role = "aut"))
as necessary.
Maintainer: ‘Harvinder Singh <harvindermaan4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Harvinder",
                    family = "Singh",
                    role = c("aut", "cre"),
                    email = "harvindermaan4@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
test_coordination 6.721  0.029   9.484
wpd_features      4.655  0.089   6.928
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Maintainer: ‘Takumi Tsutaya <tsutayatakumi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Takumi",
                    family = "Tsutaya",
                    role = c("aut", "cre"),
                    email = "tsutayatakumi@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  warn.Rd: kde2d, width.SJ
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Emilie Devijver <emilie.devijver@kuleuven.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emilie",
                      family = "Devijver",
                      role = c("aut", "cre"),
                      email = "emilie.devijver@kuleuven.be"),
               person(given = "Gerda",
                      family = "Claeskens",
                      role = "aut"),
               person(given = "Irene",
                      family = "Gijbels",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
warpMix 4.644  0.056   5.593
File ‘warp/libs/warp.so’:
  Found non-API calls to R: ‘OBJECT’, ‘Rf_findVarInFrame3’,
    ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Andrea Venturini <andrea.venturini@bancaditalia.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrea",
                    family = "Venturini",
                    role = c("aut", "cre"),
                    email = "andrea.venturini@bancaditalia.it")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘flextable.R’ ‘washi_flextable.Rd’ ‘washi_scale.Rd’ ‘washi_theme.Rd’
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
stepwise.VT.val 3.986  0.016   5.532
stepwise.VT     3.769  0.032   5.374
'::' or ':::' import not declared from: ‘NPRED’
'library' or 'require' call not declared from: ‘NPRED’
Maintainer: ‘Karen R. Ryberg <kryberg@usgs.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Karen", "R."),
                      family = "Ryberg",
                      role = c("aut", "cre"),
                      email = "kryberg@usgs.gov"),
               person(given = c("Aldo", "V."),
                      family = "Vecchia",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotParam.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  waterfallchart.Rd: barchart, bwplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Hugh Parsonage <hugh.parsonage+waterfall@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hugh",
                    family = "Parsonage",
                    role = c("aut", "cre"),
                    email = "hugh.parsonage+waterfall@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
wq_calc 7.237  0.217  10.713
Maintainer: ‘Michael Stewart <michael.stewart@sydney.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Raimondo",
                      role = "aut",
                      email = "marcr@maths.usyd.edu.au"),
               person(given = "Michael",
                      family = "Stewart",
                      role = c("aut", "cre"),
                      email = "michael.stewart@sydney.edu.au"))
as necessary.
Maintainer: ‘Angi Roesch <angi@angi-stat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Angi",
                      family = "Roesch",
                      role = c("aut", "cre"),
                      email = "angi@angi-stat.com"),
               person(given = "Harald",
                      family = "Schmidbauer",
                      role = "aut",
                      email = "harald@hs-stat.com"))
as necessary.

The URL field contains the following bad parts:
  Guide
  booklet
  at
The URL field should be a list of URLs separated by commas or
whitespace.
Maintainer: ‘Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dr.", "Ranjit", "Kumar"),
                      family = "Paul",
                      role = c("aut", "cre"),
                      email = "ranjitstat@gmail.com"),
               person(given = "Sandipan",
                      family = "Samanta",
                      role = "aut"),
               person(given = "Ankit",
                      family = "Tanwar",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
best_column   5.675  0.086   7.498
warigaan_best 4.954  0.021   5.754
warigas_best  4.882  0.043   5.764
Maintainer: ‘Eric Aldrich <ealdrich@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eric",
                    family = "Aldrich",
                    role = c("aut", "cre"),
                    email = "ealdrich@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
wave.local.multiple.regression 5.321   0.31   6.966
Maintainer: ‘Olivia Cheronet <cheronetolivia@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Olivia",
                      family = "Cheronet",
                      role = c("aut", "cre"),
                      email = "cheronetolivia@gmail.com"),
               person(given = c("John", "A."),
                      family = "Finarelli",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘ReconstructedData.txt’ ‘ReconstructedDataStDev.txt’
  ‘ResampledReconstructions.txt’
  ‘ResampledReconstructionsStandardVariation.txt’
Maintainer: ‘Brandon Whitcher <bwhitcher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Brandon",
                    family = "Whitcher",
                    role = c("aut", "cre"),
                    email = "bwhitcher@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Vicente J. Bolos <vicente.bolos@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vicente", "J."),
                      family = "Bolos",
                      role = c("aut", "cre"),
                      email = "vicente.bolos@uv.es"),
               person(given = "Rafael",
                      family = "Benitez",
                      role = "aut"))
as necessary.
Maintainer: ‘Pablo Rodríguez-Sánchez <pablo.rodriguez.sanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pablo",
                    family = "Rodríguez-Sánchez",
                    role = c("aut", "cre"),
                    email = "pablo.rodriguez.sanchez@gmail.com")
as necessary.
Maintainer: ‘David Preinerstorfer <david.preinerstorfer@ulb.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Preinerstorfer",
                    role = c("aut", "cre"),
                    email = "david.preinerstorfer@ulb.be")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Heteroskedasticity Robust Tests?" <arXiv:2005.04089>. This diagnostic
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jesse Piburn <piburnjo@ornl.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Karolos Korkas <kkorkas@yahoo.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Karolos",
                      family = "Korkas",
                      role = c("aut", "cre"),
                      email = "kkorkas@yahoo.co.uk"),
               person(given = "Piotr",
                      family = "Fryzlewicz",
                      role = "aut"))
as necessary.
Maintainer: ‘Sarah Rathwell <srathwel@ualberta.ca>’

The BugReports field in DESCRIPTION has
  https://github.com/sarah-0k/wcep
which should likely be
  https://github.com/sarah-0k/wcep/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wcep.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
wcep 5.938   0.04   6.668
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  WCE.Rd: coxph.control
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
DN.Whclust        7.168  0.129   8.754
Wkmeans           6.155  0.000   8.690
DN.Wkmeans        5.289  0.048   7.425
cluster.predict   4.968  0.000   6.596
DNcluster.predict 4.479  0.024   6.717
Whclust           3.819  0.001   5.872
Maintainer: ‘Ujjwal Singh <ujjwalrsmt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ujjwal", "Singh", "Prashant", "K", "Srivastava", "<prashant.just@gmail.com)>", "Dharmendra", "Kumar", "Pandey", "<Dkp@sac.isro.gov.in>", "Sumit", "Kumar", "Chaudhary", "<sumit.mathe@gmail.com>", "Dileep", "Kumar", "Gupta"),
                      family = "<dileepgupta85@gmail.com>",
                      role = "aut",
                      email = "dileepgupta85@gmail.com"),
               person(given = "Ujjwal",
                      family = "Singh",
                      role = "cre",
                      email = "ujjwalrsmt@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
lai_inversion_lut 11.125   0.21   17.12
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lu",
                    family = "Mao",
                    role = c("aut", "cre"),
                    email = "lmao@biostat.wisc.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get_wis_raster_layer.Rd: get_map_layer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
acf.univ        6.888  0.016   7.762
portmanteauTest 6.899  0.004   8.093
nl.acf          6.830  0.001   8.241
estimation      6.632  0.003   9.192
acf.gamma_m     6.563  0.020   7.654
gradient        6.540  0.039   8.534
omega           5.864  0.004   6.462
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Brooke Anderson <brooke.anderson@colostate.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) get_cid.Rd:58-59: Lost braces
    58 | <structure search> is assembled as "{\code{substructure} |
       |                                     ^
checkRd: (-1) get_cid.Rd:59-60: Lost braces
    59 | \code{superstructure} | \code{similarity} | \code{identity}} / {\code{smiles}
       |                                                                ^
checkRd: (-1) get_cid.Rd:70-71: Lost braces
    70 | "{\code{fastidentity} | \code{fastsimilarity_2d} | \code{fastsimilarity_3d} |
       |  ^
checkRd: (-1) get_cid.Rd:71-72: Lost braces
    71 | \code{fastsubstructure} | \code{fastsuperstructure}}/{\code{smiles} |
       |                                                      ^
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ariya",
                      family = "Hidayat",
                      role = "aut"),
               person(given = "Gábor",
                      family = "Csárdi",
                      role = c("aut", "cre"),
                      email = "csardi.gabor@gmail.com"),
               person(given = "Gabor",
                      family = "Torok",
                      role = "aut"),
               person(given = "Ivan",
                      family = "De Marino",
                      role = "aut"),
               person(given = "Robert",
                      family = "Gieseke",
                      role = "aut"),
               person(given = "Steven",
                      family = "Masala",
                      role = "aut"),
               person(given = "Winston",
                      family = "Chang",
                      role = "aut"),
               person(given = "Zack",
                      family = "Weinberg",
                      role = "aut"))
as necessary.
checkRd: (-1) Session.Rd:146: Lost braces
   146 | sQuote{page load} timeout specifies a time to wait for the page loading
       |       ^
Maintainer: ‘Richard Barnes <rijard.barnes@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/r-barnes/webglobe/
which should likely be
  https://github.com/r-barnes/webglobe/issues
instead.
Author field differs from that derived from Authors@R
  Author:    ‘Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [ctb] (<https://orcid.org/0000-0003-2542-2202>), rOpenSci [fnd] (019jywm96)’
  Authors@R: ‘Scott Chamberlain [aut, cre] (ORCID: <https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [ctb] (ORCID: <https://orcid.org/0000-0003-2542-2202>), rOpenSci [fnd] (ROR: <https://ror.org/019jywm96>)’
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Keyes",
                    role = c("aut", "cre"),
                    email = "ironholds@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
evaluateModelFit          7.386  0.013   9.964
trophicSDM                5.281  0.052   8.000
predict.trophicSDMfit     4.297  0.031   6.105
coef.SDMfit               4.276  0.038   6.211
predictPotential          3.824  0.063   5.705
coef.trophicSDMfit        3.809  0.063   5.400
plotG                     3.776  0.063   5.929
computeVariableImportance 3.785  0.013   5.664
print.SDMfit              3.719  0.001   5.560
summary.SDMfit            3.683  0.005   6.796
summary.trophicSDMfit     3.668  0.009   5.174
print.trophicSDMfit       3.638  0.012   5.146
Author field differs from that derived from Authors@R
  Author:    ‘Winston Chang [aut, cre], Barret Schloerke [ctb] (<https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Winston Chang [aut, cre], Barret Schloerke [ctb] (ORCID: <https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Maintainer: ‘Jodi Beggs <jodi@alum.mit.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rense Nieuwenhuis <rense.nieuwenhuis@sofi.su.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rense",
                      family = "Nieuwenhuis",
                      role = c("aut", "cre"),
                      email = "rense.nieuwenhuis@sofi.su.se"),
               person(given = c("Manfred", "te"),
                      family = "Grotenhuis",
                      role = "aut"),
               person(given = "Ben",
                      family = "Pelzer",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Schmidt",
                      role = "aut"),
               person(given = "Ruben",
                      family = "Konig",
                      role = "aut"),
               person(given = "Rob",
                      family = "Eisinga",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) busTrace.Rd:15: Lost braces
    15 | /href{https://crawdad.org/coppe-ufrj/RioBuses/20180319/}
       |      ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Aristidis K. Nikoloulopoulos <a.nikoloulopoulos@uea.ac.uk>’

The Description field contains
  Nikoloulopoulos (2022) <arXiv:2203.04619>. It provides autoregressive
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
seqclararange 8.862  0.012  10.676
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘Cyrill Scheidegger <cyrill.scheidegger@stat.math.ethz.ch>’

The Description field contains
  Measure" <arXiv:2111.04361>. The test is a generalisation of the
  Testing and the Generalised Covariance Measure" <arXiv:1804.07203>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
checkRd: (-1) WeightedROC.Rd:10: Lost braces; missing escapes or markup?
    10 | integer/numeric with values all in {0=negative,1=positive} or
       |                                    ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
    11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
       | ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
    11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
       |                            ^
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
WeightedROC 3.451  0.051   5.299
Maintainer: ‘Aristidis K. Nikoloulopoulos <a.nikoloulopoulos@uea.ac.uk>’

The Description field contains
  <arXiv:1510.07376>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) CLIC.Rd:149: Lost braces
   149 | Composite likelihood {E}{M} algorithm with applications to
       |                         ^
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
calibrate 4.006  0.086   5.308
Maintainer: ‘Viviane Philipps <Viviane.Philipps@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Viviane",
                    family = "Philipps",
                    role = c("aut", "cre"),
                    email = "viviane.philipps@u-bordeaux.fr")
as necessary.
Maintainer: ‘Josh Pasek <josh@joshpasek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Josh",
                      family = "Pasek",
                      role = c("aut", "cre"),
                      email = "josh@joshpasek.com"),
               person(given = c("with", "some", "assistance", "from", "Alex"),
                      family = "Tahk"),
               person(given = c("some", "code", "modified", "from", "R-core;", "Additional", "contributions", "by", "Gene"),
                      family = "Culter"),
               person(given = "Marcus",
                      family = "Schwemmle."))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotwtdinteraction.Rd: mice, gam, bam
  wpct.Rd: wtd.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
hdrplot 4.33   0.29     6.6
Maintainer: ‘William Asquith <william.asquith@ttu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "William",
                    family = "Asquith",
                    role = c("aut", "cre"),
                    email = "william.asquith@ttu.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Pablo J. Villacorta <pjvi@decsai.ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pablo", "J."),
                    family = "Villacorta",
                    role = c("aut", "cre"),
                    email = "pjvi@decsai.ugr.es")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
welo_plot 3.943  0.053   5.204
Maintainer: ‘Marco Colombo <mar.colombo13@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
ooom 7.092  0.059   7.818
Maintainer: ‘Han Yu <hyu9@buffalo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Han",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "hyu9@buffalo.edu"),
               person(given = c("Rachael", "Hageman"),
                      family = "Blair",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
consensusDissTOMandTree 4.526   0.06   6.402
Maintainer: ‘Zihuai He <zihuai@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zihuai",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "zihuai@stanford.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
WGScan.Region 4.599  0.349   6.649
Maintainer: ‘Soubhik Barari <soubhikbarari@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Heather",
                      family = "Stoll",
                      role = "aut",
                      email = "hstoll@polsci.ucsb.edu"),
               person(given = "Gary",
                      family = "King",
                      role = "aut",
                      email = "king@harvard.edu"),
               person(given = "Langche",
                      family = "Zeng",
                      role = "aut",
                      email = "zeng@ucsd.edu"),
               person(given = "Christopher",
                      family = "Gandrud",
                      role = "aut",
                      email = "zelig.zee@gmail.com"),
               person(given = "Ben",
                      family = "Sabath",
                      role = "aut"),
               person(given = "Soubhik",
                      family = "Barari",
                      role = "cre",
                      email = "soubhikbarari@gmail.com"))
as necessary.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Major changes
    Minor changes
Maintainer: ‘Julian Kohne <julian.kohne@gesis.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Julian",
                    family = "Kohne",
                    role = c("aut", "cre"),
                    email = "julian.kohne@gesis.org")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_network.R’
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
plot_locations 5.185  0.166   8.152
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘coords_from_words.R’ ‘get_available_languages.R’
    ‘words_from_coords.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_characteristics.Rd’ ‘define_instances.Rd’ ‘export.R’
    ‘generate_table.Rd’ ‘get_attribute_definition_function.Rd’
    ‘get_day_part.Rd’ ‘get_level_attribute_names.Rd’ ‘get_level_names.Rd’
    ‘get_table.Rd’ ‘get_table_attribute_names.Rd’ ‘get_table_csv.Rd’
    ‘get_table_rdb.Rd’ ‘get_table_xlsx.Rd’ ‘select_date_levels.Rd’
    ‘select_day_level.Rd’ ‘select_month_level.Rd’
    ‘select_quarter_level.Rd’ ‘select_semester_level.Rd’
    ‘select_time_level.Rd’ ‘select_week_level.Rd’ ‘select_year_level.Rd’
    ‘set_attribute_definition_function.Rd’ ‘set_day_part.Rd’
    ‘set_table_attribute_names.Rd’ ‘week.R’
Maintainer: ‘Edwin de Jonge <edwindjonge@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Edwin",
                    family = "de Jonge",
                    role = c("aut", "cre"),
                    email = "edwindjonge@gmail.com")
as necessary.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Korbinian",
                      family = "Strimmer",
                      role = c("aut", "cre"),
                      email = "strimmerlab@gmail.com"),
               person(given = "Takoua",
                      family = "Jendoubi",
                      role = "aut"),
               person(given = "Agnan",
                      family = "Kessy",
                      role = "aut"),
               person(given = "Alex",
                      family = "Lewin",
                      role = "aut"))
as necessary.
Maintainer: ‘Jorge Lopez Perez <jorge@loperez.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
white_test_boot 3.978  0.052   5.189
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  download_img_data.Rd: img_data
  smooth_hist.Rd: gam
  whitestripe_ind_to_mask.Rd: writeNIfTI
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
WH_2d 4.388  0.158   5.775
Maintainer: ‘Bhaskar Karambelkar <bhaskarvk@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: rmarkdown.rstudio.com
    From: inst/doc/Using_widgetframe.html
  URI: yihui.name/knitr/
    From: inst/doc/Using_widgetframe.html
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
pairwise_delta 4.64  0.268   5.868
Maintainer: ‘Joerg grosse Schlarmann (aka Produnis) <schlarmann@produnis.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joerg", "grosse"),
                    family = "Schlarmann",
                    role = c("aut", "cre"),
                    email = "schlarmann@produnis.de",
                    comment = "aka Produnis")
as necessary.
checkRd: (-1) get_geo_box.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:29-30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:33-34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) milakes.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Os Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Os",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = "Brock",
                      family = "Tilbert",
                      role = "ctb"),
               person(given = "Clemens",
                      family = "Schmid",
                      role = "aut"))
as necessary.
Running examples in ‘wikiprofiler-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: wpplot
> ### Title: Input specific wikipathways ID to get an output in class of
> ###   wpplot.
> ### Aliases: wpplot
> 
> ### ** Examples
> 
> if (yulab.utils::has_internet())
+    wpplot('WP179') 
Warning in (function (con = stdin(), n = -1L, ok = TRUE, warn = TRUE, encoding = "unknown",  :
  incomplete final line found on 'https://www.wikipathways.org/wikipathways-assets/pathways/WP179/WP179.svg'
Error in rsvg::rsvg_nativeraster(f) : 
  Failed to parse svg: XML parse error: Error domain 1 code 77 on line 1 column 294913 of data: Premature end of data in tag g line 1
Calls: <Anonymous> ... annotation_custom -> layer -> as.grob -> as.grob.wpplot -> <Anonymous>
Execution halted
Maintainer: ‘Bradley Shanrock-Solberg <greblosb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bradley",
                    family = "Shanrock-Solberg",
                    role = c("aut", "cre"),
                    email = "greblosb@gmail.com")
as necessary.
checkRd: (-1) secondDerivative.Rd:14: Lost braces
    14 | This must be a function of the form FUN <- function(x, ...){...}
       |                                                            ^
checkRd: (-1) windAC.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) windAC.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) windAC.Rd:33: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
getProportionAreaSearched 4.537  0.258   6.206
Maintainer: ‘Neeraj Bokde <neerajdhanraj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Neeraj",
                      family = "Bokde",
                      role = c("aut", "cre"),
                      email = "neerajdhanraj@gmail.com"),
               person(given = "Andres",
                      family = "Feijoo",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Novica Nakov <nnovica@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/windsor-ai/windsoraiR/
which should likely be
  https://github.com/windsor-ai/windsoraiR/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘general_gd.R’ ‘plot_gd.R’ ‘window_gd.R’
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
coords_to_raster 8.487  0.296  12.200
krig_gd          5.662  0.076   8.281
resist_gd        4.402  0.136   5.584
Maintainer: ‘Kevin Duarte <k.duarte@chru-nancy.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kevin",
                      family = "Duarte",
                      role = c("aut", "cre"),
                      email = "k.duarte@chru-nancy.fr"),
               person(given = c("Joao", "Pedro"),
                      family = "Ferreira",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘WinRatio-package.Rd’:
    https://doi.org/10.1093/eurheartj/ehr352
    https://doi.org/10.1093/biostatistics/kxv032
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotComb.Rd: hdi
  plot_Bwiqid.Rd: postPlot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Robert W. Cort <rcorty@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robert", "W."),
                    family = "Cort",
                    role = c("aut", "cre"),
                    email = "rcorty@gmail.com")
as necessary.
Maintainer: ‘Ian Cook <ianmcook@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("TIBCO", "Software"),
                      family = "Inc.",
                      role = "aut"),
               person(given = "Ian",
                      family = "Cook",
                      role = "cre",
                      email = "ianmcook@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wkt_plot.Rd: wkt, wkb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Wencan Zhu <wencan.zhu@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wencan",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "wencan.zhu@yahoo.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
percentESS               8.045  0.011  11.388
plot.causal_estimates    6.985  0.016   9.163
print.causal_estimates   6.724  0.079   9.924
mean_diff                6.683  0.081   9.245
causal.estimate          6.677  0.066   9.402
sigma_ratio              6.719  0.003   9.251
summary.causal_estimates 6.439  0.011   9.196
Maintainer: ‘Ilana Trumble <ilana.trumble@cuanschutz.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ilana",
                      family = "Trumble",
                      role = c("aut", "cre"),
                      email = "ilana.trumble@cuanschutz.edu"),
               person(given = "Orlando",
                      family = "Ferrer",
                      role = "aut"),
               person(given = "Camden",
                      family = "Bay",
                      role = "aut"),
               person(given = "Katie",
                      family = "Mollan",
                      role = "aut"))
as necessary.

The Description field contains
  <doi:10.1080/10543406.2020.1730866> <arXiv:1901.04597>, (Mann and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
wmwpowp 5.04  0.062   6.957
Maintainer: ‘Shahla Faisal <shahla_ramzan@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shahla",
                    family = "Faisal",
                    role = c("aut", "cre"),
                    email = "shahla_ramzan@yahoo.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
wNNSel    5.702  0.002   6.406
cv.wNNSel 5.073  0.000   6.361
Maintainer: ‘Jeffrey B. Lewis <jblewis@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Keith",
                      family = "Poole",
                      role = "aut",
                      email = "ktpoole@uga.edu"),
               person(given = "Jeffrey",
                      family = "Lewis",
                      role = "aut",
                      email = "jblewis@ucla.edu"),
               person(given = "James",
                      family = "Lo",
                      role = "aut",
                      email = "lojames@usc.edu"),
               person(given = "Royce",
                      family = "Carroll",
                      role = "aut",
                      email = "rcarroll@rice.edu"),
               person(given = c("Jeffrey", "B."),
                      family = "Lewis",
                      role = "cre",
                      email = "jblewis@ucla.edu"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
woa_kmedoids 6.684  0.173   9.721
Maintainer: ‘Thilo Eichenberg <te.r@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thilo",
                    family = "Eichenberg",
                    role = c("aut", "cre"),
                    email = "te.r@gmx.net")
as necessary.
Maintainer: ‘Sudarson Mothilal Thoppay <sudarson@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sudarson", "Mothilal"),
                    family = "Thoppay",
                    role = c("aut", "cre"),
                    email = "sudarson@outlook.com")
as necessary.
Maintainer: ‘Samuel I. Berchuck <sib2@duke.edu>’

The Description field contains
  Berchuck et al (2018), <arXiv:1805.11636>. The paper is in press at the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  WoodburyMatrix-class.Rd: Matrix-class, symmetricMatrix-class
  solve-methods.Rd: Matrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jan Wijffels <jwijffels@bnosac.be>’

The Description field contains
  at <arXiv:1310.4546>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) word2vec_similarity.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) word2vec_similarity.Rd:31: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
word2vec 6.728   0.48   8.125
Maintainer: ‘Neda Daneshgar<ne_da978@stu-mail.um.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Neda",
                      family = "Daneshagr",
                      role = "aut"),
               person(given = "Majid",
                      family = "Sarmad.",
                      role = "aut"),
               person(given = "Neda",
                      family = "Daneshgar",
                      role = "cre",
                      email = "ne_da978@stu-mail.um.ac.ir"))
as necessary.
Maintainer: ‘Dawei Lang <chiffonlang@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dawei",
                      family = "Lang",
                      role = c("aut", "cre"),
                      email = "chiffonlang@icloud.com"),
               person(given = "Guan-tin",
                      family = "Chien",
                      role = "aut"))
as necessary.
Maintainer: ‘Ian Fellows <ian@fellstat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ian",
                    family = "Fellows",
                    role = c("aut", "cre"),
                    email = "ian@fellstat.com")
as necessary.
Maintainer: ‘Jonathan Bratt <jonathan.bratt@macmillan.com>’

The Description field contains
  Apply 'Wordpiece' (<arXiv:1609.08144>) tokenization to input text,
  given an appropriate vocabulary. The 'BERT' (<arXiv:1810.04805>)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) wordpiece_cache_dir.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wordpiece_cache_dir.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wordpiece_cache_dir.Rd:20-21: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘TWP.Rd’
'library' or 'require' call not declared from: ‘shiny’
Maintainer: ‘Tomas Hovorka <tomashovorka@seznam.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tomas",
                    family = "Hovorka",
                    role = c("aut", "cre"),
                    email = "tomashovorka@seznam.cz")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DSM_TermContextMatrix.Rd: dgCMatrix-class
  as_distmat.Rd: sparseMatrix
  dsm.Rd: sparseMatrix-class, dMatrix-class
  dsm_canonical_matrix.Rd: dgTMatrix-class, dgCMatrix-class,
    denseMatrix-class
  dsm_projection.Rd: sparsesvd
  rsvd.Rd: sparsesvd
  signcount.Rd: Matrix, dgeMatrix-class, dgCMatrix-class,
    dgRMatrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wflow_build.Rd: rmarkdown
  wflow_git_commit.Rd: git2r
  wflow_git_config.Rd: git2r
  wflow_git_pull.Rd: git2r
  wflow_git_push.Rd: git2r
  wflow_post_knit.Rd: rmarkdown
  wflow_pre_knit.Rd: rmarkdown
  wflow_pre_processor.Rd: rmarkdown
  wflow_remove.Rd: git2r
  wflow_rename.Rd: git2r
  wflow_start.Rd: git2r
  wflow_status.Rd: git2r
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
wordsearch 4.862  0.055   6.116
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
meeting_rank 3.098  0.008   5.192
Maintainer: ‘Neil A. Weiss <neil.a.weiss@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Neil", "A."),
                    family = "Weiss",
                    role = c("aut", "cre"),
                    email = "neil.a.weiss@asu.edu")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘wPerm-package.Rd’:
    \keyword{ package, datasets, graphs }
Maintainer: ‘Kunyu Ye <kunyuye@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kunyu",
                      family = "Ye",
                      role = c("aut", "cre"),
                      email = "kunyuye@163.com"),
               person(given = "Siyao",
                      family = "Wang",
                      role = "aut"),
               person(given = "Xudong",
                      family = "Liu",
                      role = "aut"),
               person(given = "Tianwei",
                      family = "Yu",
                      role = "aut"))
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = "Patrick",
                      family = "Gerland",
                      role = "aut",
                      email = "gerland@un.org"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu"),
               person(given = "Patrick",
                      family = "Gerland",
                      role = "aut",
                      email = "gerland@un.org"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hana",
                      family = "Sevcikova",
                      role = c("aut", "cre"),
                      email = "hanas@uw.edu",
                      comment = "hanas@uw.edu"),
               person(given = "Patrick",
                      family = "Gerland",
                      role = "aut",
                      comment = "gerland@un.org"),
               person(given = "Kirill",
                      family = "Andreev",
                      role = "aut",
                      comment = "andreev@un.org"),
               person(given = "Nan",
                      family = "Li",
                      role = "aut",
                      comment = "li32@un.org"),
               person(given = "Danan",
                      family = "Gu",
                      role = "aut",
                      comment = "gud@un.org"),
               person(given = "Thomas",
                      family = "Spoorenberg",
                      role = "aut",
                      comment = "spoorenberg@un.org"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("United", "Nations", "Population"),
                      family = "Division",
                      role = "aut"),
               person(given = "Hana",
                      family = "Sevcikova",
                      role = "cre",
                      email = "hanas@uw.edu"))
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("United", "Nations", "Population"),
                      family = "Division",
                      role = "aut"),
               person(given = "Hana",
                      family = "Sevcikova",
                      role = "cre",
                      email = "hanas@uw.edu"))
as necessary.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hana",
                    family = "Sevcikova",
                    role = c("aut", "cre"),
                    email = "hanas@uw.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
wqs_pt        10.724  1.043  14.878
wqs_full_perm 10.840  0.921  14.998
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
show_prddoy    4.479  0.028   5.572
anlz_backtrans 3.893  0.200   5.423
anlz_gam       3.731  0.047   5.002
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
compare2numvars 11.993  0.161  16.374
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
WARp 6.823  0.186   9.006
Maintainer: ‘Manuel Castejon Limas <manuel.castejon@unileon.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Manuel", "Castejon"),
                      family = "Limas",
                      role = c("aut", "cre"),
                      email = "manuel.castejon@unileon.es"),
               person(given = c("Joaquin", "Ordieres"),
                      family = "Mere",
                      role = "aut",
                      email = "joaquin.ordieres@dim.unirioja.es"),
               person(given = c("Francisco", "Javier", "de", "Cos"),
                      family = "Juez",
                      role = "aut",
                      email = "decos@api.uniovi.es"),
               person(given = c("Francisco", "Javier", "Martinez"),
                      family = "de Pison",
                      role = "aut",
                      email = "fjmartin@dim.unirioja.es"))
as necessary.

The Date field is not in ISO 8601 yyyy-mm-dd format.
Malformed Title field: should not end in a period.
Maintainer: ‘Marc Schwartz <marc_schwartz@me.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marc",
                      family = "Schwartz",
                      role = c("aut", "cre"),
                      email = "marc_schwartz@me.com"),
               person(given = c("various", "authors", "for", "Perl", "modules", "listed", "in", "each", ".pm"),
                      family = "file.",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
WriteXLS 3.476  0.428   5.808
Maintainer: ‘Lu Mao <lmao@biostat.wisc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lu",
                      family = "Mao",
                      role = c("aut", "cre"),
                      email = "lmao@biostat.wisc.edu"),
               person(given = "Tuo",
                      family = "Wang",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
pwreg      6.193  0.173   8.605
score.proc 5.513  0.031   7.741
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
qanova   5.746      0   7.302
yuend    5.124      0   6.463
t2way    4.795      0   6.358
rmanovab 4.706      0   6.834
Maintainer: ‘Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rezgar", "Arabzadeh;", "Parisa", "Aberi;", "Kaveh", "Panaghi;", "Shahab", "Araghinejad;", "Majid"),
                      family = "Montaseri",
                      role = "aut"),
               person(given = "Rezgar",
                      family = "Arabzadeh",
                      role = "cre",
                      email = "rezgararabzadeh@ut.ac.ir"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) createDemandSite.Rd:26: Lost braces
    26 |   \item{suppliers}{(optional) A list of object(s) inherited from the folowing classes: \code{\link[WRSS]{createAquifer}}, \code{\link[WRSS]{createRiver}}, \code{\link[WRSS]{createReservoir}}, code{\link[WRSS]{createDiversion}}.}
       |                                                                                                                                                                                                     ^
checkRd: (-1) createDemandSite.base.Rd:26: Lost braces
    26 |   \item{suppliers}{(optional) A list of object(s) inherited from the folowing classes: \code{\link[WRSS]{createAquifer}}, \code{\link[WRSS]{createRiver}}, \code{\link[WRSS]{createReservoir}}, code{\link[WRSS]{createDiversion}}.}
       |                                                                                                                                                                                                     ^
checkRd: (-1) createDemandSite.default.Rd:32: Lost braces
    32 |   \item{suppliers}{(optional) A list of object(s) inherited from the folowing classes: \code{\link[WRSS]{createAquifer}}, \code{\link[WRSS]{createRiver}}, \code{\link[WRSS]{createReservoir}}, code{\link[WRSS]{createDiversion}}.}
       |                                                                                                                                                                                                     ^
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
cap_design 4.788  0.057   6.099
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
prdnrmplot 4.937  0.082   6.684
fitplot    4.676  0.079   6.042
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
wsprv 6.428  0.301   8.727
Specified C++11: please drop specification unless essential
Maintainer: ‘Rui Sun <rsunzju@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rui",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "rsunzju@gmail.com"),
               person(given = c("Maggie", "Haitian"),
                      family = "Wang",
                      role = "aut"))
as necessary.
checkRd: (-1) wtest.Rd:61-64: Lost braces
    61 | {When \code{w.order} =2, the \code{wtest()} will automatically calculate the main effect first and then do a pre-filter before calculating interactions.
       | ^
checkRd: (-1) wtest.high.Rd:61-64: Lost braces
    61 | {When \code{w.order} > 2, the \code{wtest()} will automatically calculate the main effect first and then do a pre-filter before calculating interactions.
       | ^
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
w.diagnosis 7.374  0.020   8.775
wtest.high  4.682  0.004   5.419
hf          4.006  0.098   5.001
Maintainer: ‘Deisy Morselli Gysi <deisy.ccnr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Deisy", "Morselli"),
                      family = "Gysi",
                      role = c("aut", "cre"),
                      email = "deisy.ccnr@gmail.com"),
               person(given = "Andre",
                      family = "Voigt",
                      role = "aut"),
               person(given = c("Tiago", "Miranda"),
                      family = "Fragoso",
                      role = "aut"),
               person(given = "Eivind",
                      family = "Almaas",
                      role = "aut"),
               person(given = "Katja",
                      family = "Nowick.",
                      role = "aut"))
as necessary.
Maintainer: ‘Stéphane Guerrier <stef.guerrier@gmail.com>’

The Description field contains
  Guerrier, S. & Molinari, R. (2016) <arXiv:1607.05858>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) batch_modwt_wvar_cpp.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) batch_modwt_wvar_cpp.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) batch_modwt_wvar_cpp.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3_robust.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3_robust.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3_robust.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_wave_variance.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_wave_variance.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_wave_variance.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modwt_wvar_cpp.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modwt_wvar_cpp.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modwt_wvar_cpp.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wvar_cpp.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wvar_cpp.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wvar_cpp.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Shu Chen <chenshu@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shu",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "chenshu@umich.edu"),
               person(given = "Andrzej",
                      family = "Galecki",
                      role = "aut",
                      email = "agalecki@umich.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
GOF_far 14.787  0.185  20.576
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
checkRd: (-1) exploreSignatures.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:58-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:65-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:67-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generateData.Rd:47: Lost braces
    47 | \bold{code{data}} \tab the generated data \cr
       |           ^
checkRd: (-1) generateData.Rd:53: Lost braces
    53 | Refer to \bold{\emph{code{\link{retrieveDataFactory}}}} and to
       |                          ^
checkRd: (-1) qualifyFunctionArguments.Rd:14: Lost braces
    14 | A emph{\code{list}} with following names
       |       ^
checkRd: (-1) qualifyFunctionArguments.Rd:26: Lost braces
    26 | \item{code{arguments}}{a \code{pairList} of argument names and values.
       |           ^
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
checkRd: (-1) completeManualPage.Rd:12: Lost braces
    12 | See \emph{\bold{code{\link{ProcessingContext}}}}. Only
       |                     ^
checkRd: (-1) produceAllManualPagesFromObject.Rd:14: Lost braces
    14 | See \emph{\bold{\\code{\link{ProcessingContext}}}}.}
       |                       ^
Maintainer: ‘Fabien Gelineau <neonira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabien",
                    family = "Gelineau",
                    role = c("aut", "cre"),
                    email = "neonira@gmail.com")
as necessary.
Maintainer: ‘Alexander Kowarik <alexander.kowarik@statistik.gv.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Kowarik",
                      role = c("aut", "cre"),
                      email = "alexander.kowarik@statistik.gv.at"),
               person(given = "Angelika",
                      family = "Meraner",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
admix_barplot 6.037  0.211   8.203
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  inf_mr.Rd: httw
  moon_reader.Rd: html_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
cdcc_estimation 3.711  0.353   5.427
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
futureLapplyHet 2.326  0.066   5.885
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
xegaRun 12.856  0.129  16.884
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
predictSelectTime   6.477      0   6.729
runSelectBenchmarks 4.198      0   5.161
checkRd: (-1) xshow.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) xshow.Rd:20: Lost braces in \enumerate; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xtest.Rd: compareGrowthCurves
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Philip Leifeld <philip.leifeld@essex.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘chemnet.Rd’:
    http://dx.doi.org/10.1111/j.1540-5907.2011.00580.x
    http://dx.doi.org/10.1007%2F978-3-531-91883-9_6
  File ‘knecht.Rd’:
    http://dx.doi.org/10.1111/j.1467-9507.2009.00564.x
    http://dx.doi.org/10.1016/j.socnet.2009.02.004
checkRd: (-1) chemnet.Rd:111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chemnet.Rd:112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knecht.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knecht.Rd:104: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knecht.Rd:105: Lost braces in \itemize; meant \describe ?
Author field differs from that derived from Authors@R
  Author:    ‘Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>, https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>), Christophe Dervieux [ctb]’
  Authors@R: ‘Yihui Xie [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-0645-5666>, URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: <https://orcid.org/0000-0002-5329-5987>), Christophe Dervieux [ctb]’
Found the following files/directories:
  ‘xgb.txt’
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
xgx_stat_ci 6.23  0.095   8.481
Maintainer: ‘Juste Goungounga <juste.goungounga@ehesp.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juste",
                      family = "Goungounga",
                      role = c("aut", "cre"),
                      email = "juste.goungounga@ehesp.fr",
                      comment = c(ORCID = "0000-0002-9039-2639")),
               person(given = "Hadrien",
                      family = "Charvat",
                      role = "aut",
                      comment = c(ORCID = "0000-0003-3624-1394")),
               person(given = "Darlin",
                      family = "Mba",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-9768-0230")),
               person(given = "Nathalie",
                      family = "Graffeo",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-7227-7525")),
               person(given = "Roch",
                      family = "Giorgi",
                      role = "aut",
                      comment = c(ORCID = "0000-0001-6135-3078")))
as necessary.
Maintainer: ‘Susan Holmes <sp.holmes@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Susan",
                      family = "Holmes",
                      role = c("aut", "cre"),
                      email = "sp.holmes@gmail.com"),
               person(given = "Sourav",
                      family = "Chatterjee",
                      role = "aut"))
as necessary.

The Description field contains
  Chatterjee, Sourav (2020) <arXiv:1909.10140> This package includes the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Lumley",
                      role = c("aut", "cre"),
                      email = "t.lumley@auckland.ac.nz"),
               person(given = c("using", "data", "from", "Randall"),
                      family = "Munroe",
                      role = "aut"),
               person(given = c("about", "2.2e5", "survey"),
                      family = "participants",
                      role = "aut"))
as necessary.
Maintainer: ‘Emilio Torres-Manzanera <torres@uniovi.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emilio",
                    family = "Torres-Manzanera",
                    role = c("aut", "cre"),
                    email = "torres@uniovi.es")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fit_XCI_E_model.Rd: coxph
  fit_XCI_model.Rd: coxph
  fit_all_models.Rd: coxph
  xlink_fit.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Emeline Perthame <emeline.perthame@pasteur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emeline",
                      family = "Perthame",
                      role = c("aut", "cre"),
                      email = "emeline.perthame@pasteur.fr",
                      comment = "emeline.perthame@inria.fr"),
               person(given = "Florence",
                      family = "Forbes",
                      role = "aut",
                      comment = "florence.forbes@inria.fr"),
               person(given = "Antoine",
                      family = "Deleforge",
                      role = "aut",
                      comment = "antoine.deleforge@inria.fr"),
               person(given = "Emilie",
                      family = "Devijver",
                      role = "aut",
                      comment = "emilie.devijver@kuleuven.be"),
               person(given = "Melina",
                      family = "Gallopin",
                      role = "aut",
                      comment = "melina.gallopin@u-psud.fr"))
as necessary.

The Description field contains
  al (2017) <arXiv:1701.07899>) which is an extension of GLLiM with a
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
xls.fit 8.801   0.18  10.753
No examples, no tests, no vignettes
Maintainer: ‘Carson Sievert <cpsievert1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carson",
                    family = "Sievert",
                    role = c("aut", "cre"),
                    email = "cpsievert1@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  XML2Obs.Rd: getNodeSet
  XML2R.Rd: xmlParse, getNodeSet
  docsToNodes.Rd: getNodeSet
  nodesToList.Rd: xmlToList
  re_name.Rd: collapse
  urlsToDocs.Rd: xmlParse
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) xml_to_df.Rd:144: Lost braces; missing escapes or markup?
   144 | Default {NULL} means the workbook will not be protected with a password}
       |         ^
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
File ‘XML/libs/XML.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Florian Schwendinger <FlorianSchwendinger@gmx.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Florian",
                    family = "Schwendinger",
                    role = c("aut", "cre"),
                    email = "florianschwendinger@gmx.at")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_frag.R’ ‘data_frag.R’ ‘elem.Rd’ ‘list_as_xml_document.R’
    ‘read_fragment.R’ ‘tag.R’ ‘write_xml.R’ ‘xml_fragment.R’
    ‘xmlbuilder.R’ ‘xmlbuilder.Rd’
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
docinfo      4.616  0.335   7.464
edit_docinfo 4.142  0.372   7.074
edit_xmp     3.345  0.299   5.751
Maintainer: ‘Joris Meys <Joris.Meys@UGent.be>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘drugTargetInteraction.Rd’:
    https://doi.org/10.1093/bioinformatics/btn162
  File ‘loo.Rd’:
    http://doi.org/10.1093/bib/bby095
  File ‘proteinInteraction.Rd’:
    https://doi.org/10.1093/bioinformatics/bth910
  File ‘xnet-package.Rd’:
    http://doi.org/10.1093/bib/bby095
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xpose.VPC.categorical.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
expose_param     10.244  0.018  11.654
focus_xpdb        7.401  0.003   8.443
waterfalls        7.324  0.062   9.593
catdv_vs_dvprobs  6.259  0.302   8.851
modavg_xpdb       5.799  0.009   7.366
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  imDisplay.Rd: cimg
  imRead.Rd: load.image, imager, cimg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John Chambers <jmc@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "M."),
                      family = "Chambers",
                      role = "aut"),
               person(given = "John",
                      family = "Chambers",
                      role = "cre",
                      email = "jmc@r-project.org"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  RJulia.Rd: getInterface
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John Chambers <jmc@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "M."),
                      family = "Chambers",
                      role = "aut"),
               person(given = "John",
                      family = "Chambers",
                      role = "cre",
                      email = "jmc@r-project.org"))
as necessary.
Maintainer: ‘John Chambers <jmc@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "M."),
                      family = "Chambers",
                      role = "aut"),
               person(given = "John",
                      family = "Chambers",
                      role = "cre",
                      email = "jmc@r-project.org"))
as necessary.
Maintainer: ‘Hitoshi Iuchi <hiuchi@sfc.keio.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hitoshi",
                      family = "Iuchi",
                      role = c("aut", "cre"),
                      email = "hiuchi@sfc.keio.ac.jp"),
               person(given = c("Rikuhiro", "G."),
                      family = "Yamada",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
chiSqPeriodogramPlot  5.2  0.058     6.3
Found the following files/directories:
  ‘xtable.html’ ‘xtable.tex’
Maintainer: ‘Joao Claudio Macosso <joaoclaudiomacosso@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joao", "Claudio"),
                    family = "Macosso",
                    role = c("aut", "cre"),
                    email = "joaoclaudiomacosso@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  estimateVariance.Rd: selectiveInference
  xtune.Rd: glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) xwfGridsearch.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{iter}{Number of levels in the adaptive grid search. The resolution in b obtained is 2^{-1-iter}.}
       |                                                                                             ^
checkRd: (-1) cat_sim.Rd:110: Lost braces; missing escapes or markup?
   110 | \code{min} and {max} are mandatory for setting limits on the test length. User-defined
       |                ^
Maintainer: ‘Carter T. Butts <buttsc@uci.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carter", "T."),
                    family = "Butts",
                    role = c("aut", "cre"),
                    email = "buttsc@uci.edu")
as necessary.
Maintainer: ‘WenSui Liu <liuwensui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "WenSui",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "liuwensui@gmail.com")
as necessary.
Maintainer: ‘John W. Emerson <john.emerson@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "W."),
                      family = "Emerson",
                      role = c("aut", "cre"),
                      email = "john.emerson@yale.edu"),
               person(given = c("Walton", "A."),
                      family = "Green",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
ggplot.decorated       6.553  0.053   8.194
print.decorated_ggplot 6.321  0.047   8.861
ggready.decorated      6.193  0.051   7.351
ggready.data.frame     6.141  0.047   8.360
ggready                6.041  0.074   7.784
Maintainer: ‘Shawn Garbett <shawn.garbett@vumc.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Shawn", "P"),
                      family = "Garbett",
                      role = "aut"),
               person(given = "Jeremy",
                      family = "Stephens",
                      role = c("aut", "cre")),
               person(given = "Kirill",
                      family = "Simonov",
                      role = "aut"),
               person(given = "Yihui",
                      family = "Xie",
                      role = "ctb"),
               person(given = "Zhuoer",
                      family = "Dong",
                      role = "ctb"),
               person(given = "Hadley",
                      family = "Wickham",
                      role = "ctb"),
               person(given = "Jeffrey",
                      family = "Horner",
                      role = "ctb"),
               person(family = "reikoch",
                      role = "ctb"),
               person(given = "Will",
                      family = "Beasley",
                      role = "ctb"),
               person(given = "Brendan",
                      family = "O'Connor",
                      role = "ctb"),
               person(given = c("Gregory", "R."),
                      family = "Warnes",
                      role = "ctb"),
               person(given = "Michael",
                      family = "Quinn",
                      role = "ctb"),
               person(given = c("Zhian", "N."),
                      family = "Kamvar",
                      role = "ctb"),
               person(given = "Charlie",
                      family = "Gao",
                      role = "ctb"),
               person(given = "Shawn",
                      family = "Garbett",
                      role = "cre",
                      email = "shawn.garbett@vumc.org"))
as necessary.
File ‘yaml/libs/yaml.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Nathaniel Phillips <yarrr.book@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: www.thepiratesguidetor.com
    From: inst/doc/guide.html
  URI: www.github.com/ndphillips/yarrr/issues
    From: inst/doc/pirateplot.html

The URL field contains the following bad parts:
  www.thepiratesguidetor.com
The URL field should be a list of URLs separated by commas or
whitespace.
Maintainer: ‘Somjit Roy <somjit.roy2001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Somjit",
                    family = "Roy",
                    role = c("aut", "cre"),
                    email = "somjit.roy2001@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ycevo.Rd: dplyr_tidy_select
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
vis_kernel 5.197  0.151   7.163
ycevo_data 4.516  0.052   5.403
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘exhaustive_lhl.Rd’ ‘gaussian_fit.Rd’ ‘hyperbolic_fit.Rd’
Maintainer: ‘Kim Nimon <kim.nimon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kim",
                      family = "Nimon",
                      role = c("aut", "cre"),
                      email = "kim.nimon@gmail.com"),
               person(given = "Fred",
                      family = "Oswald",
                      role = "aut"),
               person(given = c("J.", "Kyle"),
                      family = "Roberts.",
                      role = "aut"))
as necessary.
checkRd: (-1) boot.yhat.Rd:3: Lost braces
     3 | \title{Bootstrap metrics produced from /code{calc.yhat}}
       |                                             ^
checkRd: (-1) boot.yhat.Rd:19: Lost braces
    19 |     Ouput of /code{lm}
       |                   ^
checkRd: (-1) boot.yhat.Rd:22: Lost braces
    22 |     Output of /code{calc.yhat}
       |                    ^
checkRd: (-1) booteval.yhat.rd:3: Lost braces
     3 | \title{Evaluate bootstrap metrics produced from /code{calc.yhat}}
       |                                                      ^
checkRd: (-1) booteval.yhat.rd:5: Lost braces
     5 |   This function evaluates the bootstrap metrics produced from /code{boot.yhat}.   
       |                                                                    ^
checkRd: (-1) combCI.rd:26: Lost braces
    26 |   This function evaluates the bootstrap metrics produced from /code{boot.yhat}.   
       |                                                                    ^
checkRd: (-1) commonality.rd:12: Lost braces
    12 |     Output from /code{aps}
       |                      ^
checkRd: (-1) dombin.rd:12: Lost braces
    12 |     Output from /code{dominance}
       |                      ^
checkRd: (-1) dominance.rd:12: Lost braces
    12 |     Output from /code{aps}
       |                      ^
checkRd: (-1) plotCI.yhat.rd:5: Lost braces
     5 |   This function plots CIs that have been produced from /code{booteval.yhat}.
       |                                                             ^
checkRd: (-1) plotCI.yhat.rd:32: Lost braces
    32 |   This function plots CIs that have been produced from /code{booteval.yhat}.   
       |                                                             ^
checkRd: (-1) plotCI.yhat.rd:35: Lost braces
    35 | This returns a plot of CIs that have been produced from /code{booteval.yhat}.
       |                                                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  boot.yhat.Rd: boot
  booteval.yhat.rd: boot
  plotCI.yhat.rd: boot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
boot.yhat 4.336  0.072   5.357
Maintainer: ‘Greg Lamp <greg@yhathq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Greg",
                      family = "Lamp",
                      role = c("aut", "cre"),
                      email = "greg@yhathq.com"),
               person(given = "Stevie",
                      family = "Smith",
                      role = "aut",
                      email = "dev@yhathq.com"),
               person(given = "Ross",
                      family = "Kippenbrock",
                      role = "aut",
                      email = "ross@yhathq.com"))
as necessary.
'library' or 'require' calls not declared from:
  ‘plyr’ ‘randomForest’
Maintainer: ‘Sergio Salvino Guirreri <sergioguirreri@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Sergio", "Salvino"),
                    family = "Guirreri",
                    role = c("aut", "cre"),
                    email = "sergioguirreri@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tinniam V Ganesh <tvganesh.85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tinniam", "V"),
                    family = "Ganesh",
                    role = c("aut", "cre"),
                    email = "tvganesh.85@gmail.com")
as necessary.
Maintainer: ‘Matías Castillo Aguilar <matcasti@umag.cl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

The Description field contains
  et al. (2019) <arXiv:1910.04475>. Model fitting can be carried out via
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daewoo Pak <heavyrain.pak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daewoo",
                      family = "Pak",
                      role = c("aut", "cre"),
                      email = "heavyrain.pak@gmail.com"),
               person(given = "Song",
                      family = "Yang",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
ypinterim 3.766  0.149   5.099
Maintainer: ‘Junlong Sun <junlong.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Junlong",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "junlong.sun@gmail.com"),
               person(given = "Song",
                      family = "Yang",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’

The Description field contains
  Mayrink (2019) <arXiv:1910.02406>. Model fitting carried out via
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
ypr_tabulate_yields 3.779  0.003   5.164
Maintainer: ‘Xuanhua (Peter) Yin <peteryin.sju@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Manuel",
                      family = "Russon",
                      role = "aut",
                      email = "RUSSONM@stjohns.edu"),
               person(given = "Xuanhua",
                      family = "Yin",
                      role = "aut",
                      email = "peteryin.sju@hotmail.com",
                      comment = "Peter"),
               person(given = "Xuanhua",
                      family = "Yin",
                      role = "cre",
                      email = "peteryin.sju@hotmail.com",
                      comment = "Peter"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
pl.smgg 5.001  0.036   7.444
Maintainer: ‘Emanuele Guidotti <emanuele.guidotti@hotmail.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("YUIMA", "Project"),
                      family = "Team",
                      role = "aut"),
               person(given = "Emanuele",
                      family = "Guidotti",
                      role = "cre",
                      email = "emanuele.guidotti@hotmail.it"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘yyjsonr/libs/yyjsonr.so’:
  Found non-API calls to R: ‘R_lsInternal’, ‘SETLENGTH’,
    ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Robert Lee <rhlee@colorado.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robert",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "rhlee@colorado.edu")
as necessary.
Maintainer: ‘Clare Horscroft <chorscroft@aol.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Clare",
                    family = "Horscroft",
                    role = c("aut", "cre"),
                    email = "chorscroft@aol.co.uk")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
lrEM     6.371  0.064   8.061
lrEMplus 5.083  0.009   6.660
lrDA     3.706  0.068   5.192
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘zcta.R’
Maintainer: ‘Francois Brun <francois.brun@acta.asso.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francois",
                      family = "Brun",
                      role = c("aut", "cre"),
                      email = "francois.brun@acta.asso.fr",
                      comment = "ACTA"),
               person(given = "David",
                      family = "Makowski",
                      role = "aut",
                      comment = "INRA"),
               person(given = "Daniel",
                      family = "Wallach",
                      role = "aut",
                      comment = "INRA"),
               person(given = c("James", "W."),
                      family = "Jones.",
                      role = "aut",
                      comment = "U.of Florida"))
as necessary.
'library' or 'require' calls not declared from:
  ‘coda’ ‘dlm’ ‘maps’ ‘mgcv’ ‘mnormt’ ‘mvtnorm’ ‘randomForest’ ‘rpart’
  ‘rpart.plot’ ‘sensitivity’ ‘sp’ ‘spatial’ ‘tseries’
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
periodogram 24.737  1.207  11.209
find_peaks  24.193  1.430  11.017
spectrogram  5.411  0.231   2.585
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ZenodoManager.Rd: R6Class
  ZenodoRecord.Rd: R6Class, DCEntry
  ZenodoRequest.Rd: R6Class
  zen4RLogger.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Tanya Cashorali <tanyacash@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tanya",
                    family = "Cashorali",
                    role = c("aut", "cre"),
                    email = "tanyacash@gmail.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cache_report.R’ ‘list_deposit.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  graph_pairs.Rd: graphNEL
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
zenplot 6.864  0.354   8.679
'library' or 'require' calls not declared from:
  ‘crop’ ‘mvtnorm’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘deposit_stats.R’ ‘scrap_stats.R’
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
    54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
       |                                                                                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  glm.cons.Rd: glm2
  glm.fit.cons.Rd: glm.fit2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
Plot.zeta.scale.regular 4.707  0.024   5.097
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘external_fitters.Rd’ ‘zfunction.Rd’ ‘zlm.Rd’ ‘zprint.Rd’
Maintainer: ‘Markus Jochmann <markus.jochmann@ncl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Jochmann",
                    role = c("aut", "cre"),
                    email = "markus.jochmann@ncl.ac.uk")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
SIM_ZINAR 4.82  0.074   6.248
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
estimate_zinarp 7.963   0.11  10.156
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘convert-jyear-legacy.R’
Maintainer: ‘Gavin Rozzi <gr@gavinrozzi.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tianchen Xu <tx2155@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tianchen",
                      family = "Xu",
                      role = c("aut", "cre"),
                      email = "tx2155@columbia.edu",
                      comment = c(ORCID = "0000-0002-0102-7630")),
               person(given = c("Ryan", "T."),
                      family = "Demmer",
                      role = "aut"),
               person(given = "Gen",
                      family = "Li",
                      role = "aut"))
as necessary.
Maintainer: ‘Ariel Duarte-López <aduarte@ac.upc.edu>’

The Description field contains
  (2013) <arXiv:1304.4540>, the Zipf-Poisson Extreme (Zipf-PE), the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stefan Evert <stefan.evert@fau.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Evert",
                      role = c("aut", "cre"),
                      email = "stefan.evert@fau.de"),
               person(given = "Marco",
                      family = "Baroni",
                      role = "aut",
                      email = "marco.baroni@unitn.it"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘productivity_measures.Rd’:
    http://dx.doi.org/10.18419/opus-2556
  File ‘zipfR_package.Rd’:
    http://dx.doi.org/10.18419/opus-2556
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
lnre                       5.517  0.003   6.517
lnre_productivity_measures 4.183  0.098   5.130
lnre_bootstrap             2.594  0.052   9.472
Maintainer: ‘Melina Ribaud <melina.ribaud@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Melina",
                    family = "Ribaud",
                    role = c("aut", "cre"),
                    email = "melina.ribaud@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
plotZLA 1.321  0.008  12.005
testZLA 0.217  0.001  10.167
Maintainer: ‘Magnus Thor Torfason <m@zulutime.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Magnus", "Thor"),
                    family = "Torfason",
                    role = c("aut", "cre"),
                    email = "m@zulutime.net")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘notate.R’
Maintainer: ‘Fang Liu <fang.liu.131@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Fang", "Liu", "with", "contributions", "from", "Yunchuan"),
                      family = "Kong",
                      role = "aut",
                      email = "fang.liu.131@nd.edu"),
               person(given = "Fang",
                      family = "Liu",
                      role = "cre",
                      email = "fang.liu.131@nd.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  zoib.Rd: Formula
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) ZIClass.Rd:87: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:72: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:74: Escaped LaTeX specials: \_
checkRd: (-1) zid.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:63: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:182: Lost braces
   182 |   dQuote{tab-delimited text file} when you have done and close the spreadsheet
       |         ^
Maintainer: ‘Jose M Pozo <josmpozo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
LogRatios     5.948  0.003   7.173
RemoveNACases 5.210  0.001   6.288
checkRd: (-1) in.zoom.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:13: Lost braces in \itemize; meant \describe ?
Maintainer: ‘David Beiner <zra.r.package@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Beiner",
                    role = c("aut", "cre"),
                    email = "zra.r.package@gmail.com")
as necessary.
Maintainer: ‘Ernest Guevarra <ernestgmd@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘anthro4.Rd’:
    https://doi.org/10.1136/bmj.j3423
checkRd: (-1) update_ztable.Rd:75: Lost braces; missing escapes or markup?
    75 | must be NULL or contain only elements of {"h","t","b","p","!","H"}.}
       |                                          ^
checkRd: (-1) ztable_sub.Rd:78: Lost braces; missing escapes or markup?
    78 | must be NULL or contain only elements of {"h","t","b","p","!","H"}.
       |                                          ^
Maintainer: ‘Masatoshi Katabuchi <mattocci27@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Masatoshi",
                    family = "Katabuchi",
                    role = c("aut", "cre"),
                    email = "mattocci27@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Oliver Kirchkamp <oliver@kirchkamp.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Kirchkamp",
                    role = c("aut", "cre"),
                    email = "oliver@kirchkamp.de")
as necessary.
Maintainer: ‘Vincent Guyader <vincent@thinkr.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vincent",
                    family = "Guyader",
                    role = c("aut", "cre"),
                    email = "vincent@thinkr.fr")
as necessary.
Maintainer: ‘Leah F. South <leah.south@hdr.qut.edu.au>’

The Description field contains
  <arXiv:1811.05073>), control functionals (CF, Oates et al. (2017)
  South et al., 2020 <arXiv:2002.00033>). ZV-CV is a parametric approach
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Frederik Kok Hansen <frederik_kok@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Frederik", "Kok"),
                    family = "Hansen",
                    role = c("aut", "cre"),
                    email = "frederik_kok@icloud.com")
as necessary.
Maintainer: ‘Scott Fortmann-Roe <scottfr@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Scott",
                    family = "Fortmann-Roe",
                    role = c("aut", "cre"),
                    email = "scottfr@berkeley.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xtable.A3.Rd: print.xtable
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mintu Nath <dr.m.nath@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mintu",
                    family = "Nath",
                    role = c("aut", "cre"),
                    email = "dr.m.nath@gmail.com")
as necessary.
Maintainer: ‘Florian Lerch <lerch@mathematik.uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Thrun",
                      role = "aut"),
               person(given = "Jorn",
                      family = "Lotsch",
                      role = "aut"),
               person(given = "Alfred",
                      family = "Ultsch",
                      role = "aut"),
               person(given = "Florian",
                      family = "Lerch",
                      role = "cre",
                      email = "lerch@mathematik.uni-marburg.de"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘SwissInhabitants.Rd’:
    \keyword{datasets,SwissInhabitants,SwissInhabitant [TRUNCATED]
Specified C++11: please drop specification unless essential
checkRd: (-1) abclass.Rd:133: Lost braces; missing escapes or markup?
   133 |     \code{abclass.control()} returns an object of class {abclass.control}
       |                                                         ^
checkRd: (-1) supclass.Rd:109: Lost braces; missing escapes or markup?
   109 | to solve the equivalent linear programming problem via the package {Rglpk}.
       |                                                                    ^
checkRd: (-1) supclass.Rd:110: Lost braces; missing escapes or markup?
   110 | It is recommended to use a recent version of {GLPK}.
       |                                              ^
Maintainer: ‘Abdulmonem Alsaleh <a.alsaleh@hotmail.co.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abdulmonem",
                      family = "Alsaleh",
                      role = c("cre", "aut"),
                      email = "a.alsaleh@hotmail.co.nz"),
               person(given = "Robert",
                      family = "Weeks",
                      role = "aut"),
               person(given = "Ian",
                      family = "Morison",
                      role = "aut"),
               person(family = "RStudio",
                      role = "ctb"))
as necessary.
user system elapsed
gfitpca 4.562  0.004   5.522
 OK
Maintainer: ‘Jean-Michel Marin <jean-michel.marin@umontpellier.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Michel",
                      family = "Marin",
                      role = c("aut", "cre"),
                      email = "jean-michel.marin@umontpellier.fr"),
               person(given = "Louis",
                      family = "Raynal",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Pudlo",
                      role = "aut"),
               person(given = c("Christian", "P."),
                      family = "Robert",
                      role = "ctb"),
               person(given = "Arnaud",
                      family = "Estoup",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  abcrf.Rd: ranger
  covRegAbcrf.Rd: ranger
  densityPlot.Rd: ranger
  err.regAbcrf.Rd: ranger
  plot.regAbcrf.Rd: ranger
  predict.abcrf.Rd: ranger
  predict.regAbcrf.Rd: predict.ranger, ranger
  predictOOB.Rd: predict.ranger, ranger
  regAbcrf.Rd: ranger
  variableImpPlot.Rd: ranger
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  abctools-package.Rd: abc
  cov.pi.Rd: abc, postpr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Kevin M. Middleton <middletonk@missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kevin", "M."),
                      family = "Middleton",
                      role = c("aut", "cre"),
                      email = "middletonk@missouri.edu"),
               person(given = "Randall",
                      family = "Pruim",
                      role = "aut",
                      email = "rpruim@calvin.edu"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: middletonk@missouri.edu
    From: man/abd-package.Rd
  URI: rpruim@calvin.edu
    From: man/abd-package.Rd
user system elapsed
plot.abe       6.631  0.070   9.228
pie.abe        4.827  0.097   7.693
abe.resampling 3.901  0.070   5.539
 OK
user system elapsed
detect_pk 7.12      0   8.409
 OK
checkRd: (-1) get_ex_data.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_ex_data.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_ex_data.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_ex_data.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_results.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_results.Rd:30: Lost braces in \itemize; meant \describe ?
user system elapsed
energyVIZ 5.147  0.201    7.13
 OK
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Jose Jimenez <jose@jimenezluna.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jose",
                    family = "Jimenez",
                    role = c("aut", "cre"),
                    email = "jose@jimenezluna.com")
as necessary.
Maintainer: ‘Matthew Kumar <mattkumar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Kumar",
                    role = c("aut", "cre"),
                    email = "mattkumar@gmail.com")
as necessary.
Maintainer: ‘Adam J. Rothman <arothman@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J."),
                    family = "Rothman",
                    role = c("aut", "cre"),
                    email = "arothman@umn.edu")
as necessary.
Maintainer: ‘Gokmen Altay <altaylabs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gokmen",
                    family = "Altay",
                    role = c("aut", "cre"),
                    email = "altaylabs@gmail.com")
as necessary.
checkRd: (-1) bind_tweets.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bind_tweets.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Daniel Amorese  <amorese@ipgp.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Amorese",
                    role = c("aut", "cre"),
                    email = "amorese@ipgp.fr")
as necessary.
Maintainer: ‘livio finos <livio.finos@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Livio",
                    family = "Finos",
                    role = c("aut", "cre"),
                    email = "livio.finos@unipd.it")
as necessary.
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘accelerometry.Rd’:
    https://doi.org/10.7287/peerj.preprints.3188v1
Maintainer: ‘Jung Ae Lee <jungaeleeb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jung", "Ae"),
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "julee@uark.edu")
as necessary.
checkRd: (-1) accelimp.Rd:15: Lost braces
    15 | \item[]{...}
       |        ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mice.impute.2l.zip.pmm.Rd: mice
  mice.impute.2l.zipln.Rd: mice
  mice.impute.2l.zipln.pmm.Rd: mice
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following files/directories:
  ‘acceldata2.RData’
Maintainer: ‘Jaejoon Song <jjsong2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jaejoon",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "jjsong2@mdanderson.org"),
               person(given = c("Matthew", "G."),
                      family = "Cox",
                      role = "aut"))
as necessary.
Maintainer: ‘Gudmundur Einarsson <gumeo140688@gmail.com>’

The Description field contains
  <arXiv:1705.07194>).  Functions for performing cross validation are
  the package (See Ames and Hong, <arXiv:1401.5492>). See the 'github'
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Markus Belfrage <markus.belfrage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Belfrage",
                    role = c("aut", "cre"),
                    email = "markus.belfrage@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  acdFit.Rd: solnp
  plotScatterAcd.Rd: stat_smooth
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Antony M. Overstall <A.M.Overstall@soton.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Antony", "M."),
                      family = "Overstall",
                      role = c("aut", "cre"),
                      email = "a.m.overstall@soton.ac.uk"),
               person(given = c("David", "C."),
                      family = "Woods",
                      role = "aut"),
               person(given = c("Maria", "Adamou", "&", "Damianos"),
                      family = "Michaelides",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) overstallwoods.Rd:184-185: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) overstallwoods.Rd:186-187: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) overstallwoods.Rd:188-189: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) overstallwoods.Rd:190-191: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acep_load_base.Rd’ ‘acep_rst.Rd’ ‘acep_token_plot.R’
    ‘acep_token_table.R’
user system elapsed
acep_clean 0.174  0.006   6.364
 OK
Maintainer: ‘Vladimir Polony <podalv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vladimir",
                    family = "Polony",
                    role = c("aut", "cre"),
                    email = "podalv@gmail.com")
as necessary.
Maintainer: ‘Liang He <hyx520101@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liang",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "hyx520101@gmail.com")
as necessary.
Maintainer: ‘Higor Cotta <cotta.higor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Higor",
                      family = "Cotta",
                      role = c("aut", "cre"),
                      email = "cotta.higor@gmail.com"),
               person(given = "Valderio",
                      family = "Reisen",
                      role = "aut"),
               person(given = "Pascal",
                      family = "Bondon",
                      role = "aut"),
               person(given = "Céline",
                      family = "Lévy-Leduc",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Sohn <asohn@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Sohn",
                    role = c("aut", "cre"),
                    email = "asohn@uni-goettingen.de")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  doACNE.Rd: AffymetrixCelSet, Verbose
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Morgane Pierre-Jean <morgane.pierrejean@genopole.cnrs.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tomas Bacigal <bacigal@math.sk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tomas",
                    family = "Bacigal",
                    role = c("aut", "cre"),
                    email = "bacigal@math.sk")
as necessary.
user system elapsed
xCopula 3.557  0.192   5.334
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acoRn.R’ ‘clean_input.R’ ‘create_mock_dataset.R’
    ‘exclude_duplicates.R’ ‘find_parents.R’ ‘identify_duplicates.R’
Maintainer: ‘Siakoulis Vasilios <Siakoulis.Vasilios@atticabank.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siakoulis",
                      family = "Vasileios",
                      role = "aut"),
               person(given = "Siakoulis",
                      family = "Vasilios",
                      role = "cre",
                      email = "Siakoulis.Vasilios@atticabank.gr"))
as necessary.
Maintainer: ‘Sam Buttrey <buttrey@nps.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dave",
                      family = "Ruth",
                      role = "aut"),
               person(given = "Sam",
                      family = "Buttrey",
                      role = c("aut", "cre"),
                      email = "buttrey@nps.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rRegMatch.Rd: daisy, treeClust.dist
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
No examples, no tests, no vignettes
Maintainer: ‘Henrik Singmann <singmann+acss@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
acss 5.884  0.342   9.939
 OK
Maintainer: ‘Prabhanjan Tattar <prabhanjannt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prabhanjan",
                    family = "Tattar",
                    role = c("aut", "cre"),
                    email = "prabhanjannt@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Disease.Rd’:
    \keyword{residual analysis, logistic regression}
  File ‘bs.Rd’:
    \keyword{score function, binomial distribution}
  File ‘chest.Rd’:
    \keyword{rootogram, militiamen}
  File ‘cloud.Rd’:
    \keyword{stem-and-leaf plot, cloud seeding experim [TRUNCATED]
  File ‘cork.Rd’:
    \keyword{multivariate dataset, singular value deco [TRUNCATED]
  File ‘cs.Rd’:
    \keyword{Cauchy random samples, score function}
  File ‘depression.Rd’:
    \keyword{Wilcoxon test, Hamilton depression scale} [TRUNCATED]
  File ‘flight.Rd’:
    \keyword{transformation, variance reduction}
  File ‘lowbwt.Rd’:
    \keyword{logistic regression, model selection}
  File ‘memory.Rd’:
    \keyword{fivenum, IQR}
checkRd: (-1) Ehrenfest.Rd:19: Lost braces
    19 | In this experiment there are i balls in Urn I, and remaining 2n-i balls in Urn II. Then at any instance, the probability of selecting a ball from Urn I and placing it in Urn II is i/2n, and the other way of placing a ball from Urn II to Urn I is (2n-i)/2n. At each instant we let the number i of balls in the Urn I to be the state of the system. Thus, the state space is S = { 0, 1, 2, \ldots, 2n }. Then we can pass from state i only to either of the states i-1 or i+1.
       |                                                                                                                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) Ehrenfest.Rd:20: Lost braces
    20 | Here, S = {0, 1, \ldots, 2n}. 
       |           ^
Maintainer: ‘Wenchao Ma <wenchao.ma@ua.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chia-Yi",
                      family = "Chiu",
                      role = "aut",
                      comment = "University of Minnesota"),
               person(given = "Wenchao",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "wenchao.ma@ua.edu",
                      comment = "The University of Alabama"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Problems with news in ‘NEWS.md’:
No news entries found.
user system elapsed
fragmentation_long 5.064  0.094   6.069
 OK
Maintainer: ‘Jairo Hidalgo Migueles <jairo.hidalgo.migueles@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jairo", "Hidalgo"),
                    family = "Migueles",
                    role = c("aut", "cre"),
                    email = "jairo.hidalgo.migueles@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_accumulation_metrics.R’
user system elapsed
plot_data 3.808  0.052   5.033
 OK
Maintainer: ‘Nathan Wycoff <nathan.wycoff@georgetown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nathan",
                      family = "Wycoff",
                      role = c("aut", "cre"),
                      email = "nathan.wycoff@georgetown.edu"),
               person(given = "Mickael",
                      family = "Binois",
                      role = "aut"))
as necessary.
Maintainer: ‘Marcus Rowcliffe <marcus.rowcliffe@ioz.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcus",
                    family = "Rowcliffe",
                    role = c("aut", "cre"),
                    email = "marcus.rowcliffe@ioz.ac.uk")
as necessary.
user system elapsed
bin_data             10.192  0.378  14.275
plot_actogram         8.979  0.196  11.541
read_clock_lab_files  8.768  0.020  11.063
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  adjustIntercept.Rd: cpglm, cpglmm, data.table
  findbars.Rd: mkRespMod, mkReTrms, nlformula, subbars
  plotRE.Rd: ggplot2, ggplot
  weights-actuaRE.Rd: cpglm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘actuar/libs/actuar.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Eleanor Caves <eleanor.caves@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eleanor",
                      family = "Caves",
                      role = c("aut", "cre"),
                      email = "eleanor.caves@gmail.com"),
               person(given = "Sönke",
                      family = "Johnsen",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘Example.jpeg’
Maintainer: ‘Esteban Alfaro <Esteban.Alfaro@uclm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Alfaro",
                      role = "aut"),
               person(given = "Esteban;",
                      family = "Gamez",
                      role = "aut"),
               person(family = "Matias",
                      role = "aut"),
               person(family = "Garcia",
                      role = "aut"),
               person(given = c("Noelia;", "with", "contributions", "from", "L."),
                      family = "Guo",
                      role = "aut"),
               person(given = "A.",
                      family = "Albano",
                      role = "aut"),
               person(given = "M.",
                      family = "Sciandra",
                      role = "aut"),
               person(given = "A.",
                      family = "Plaia",
                      role = "aut"),
               person(given = "Esteban",
                      family = "Alfaro",
                      role = "cre",
                      email = "Esteban.Alfaro@uclm.es"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  autoprune.rd: rpart
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) est_S_Plus_Plus_MethodA.Rd:31: Lost braces; missing escapes or markup?
    31 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method A}
       |                                                          ^
checkRd: (-1) est_S_Plus_Plus_MethodB.Rd:31: Lost braces; missing escapes or markup?
    31 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method B}
       |                                                          ^
checkRd: (-1) est_S_Star_Plus_MethodA.Rd:29: Lost braces; missing escapes or markup?
    29 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method A}
       |                                                          ^
checkRd: (-1) est_S_Star_Plus_MethodB.Rd:29: Lost braces; missing escapes or markup?
    29 |   \item{trt_diff}{Estimate of treatment difference for S_{*+} using Method B}
       |                                                          ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Erkut Tekeli <etekeli@atu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zeynel",
                      family = "Cebeci",
                      role = c("aut", "cre")),
               person(given = "Erkut",
                      family = "Tekeli",
                      role = c("aut", "cre"),
                      email = "etekeli@atu.edu.tr"),
               person(given = "Cagatay",
                      family = "Cebeci",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) adana.Rd:25: Lost braces; missing escapes or markup?
    25 |   \item{gatype}{Type of GA. \itemize{\item{"gga": generational GA}  \item{"ssga": steady state GA} } {Default value is "gga"}}
       |                                                                                                      ^
checkRd: (-1) adana.Rd:26: Lost braces; missing escapes or markup?
    26 |   \item{objective}{Type of optimization. \itemize{\item{"min": minimization}  \item{"max": maximization} } {Default value is "max"}}
       |                                                                                                            ^
checkRd: (-1) adana.Rd:34: Lost braces; missing escapes or markup?
    34 |                  {Default value is "initbin"}}
       |                  ^
checkRd: (-1) adana.Rd:56: Lost braces; missing escapes or markup?
    56 |                \itemize{\item{"integer"}  \item{"real"} } {Default value is "real"}}
       |                                                           ^
checkRd: (-1) adana.Rd:185: Lost braces; missing escapes or markup?
   185 |     {Default value is "w"}
       |     ^
Maintainer: ‘Dong Zhang <dzhang0716@126.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dzhang0716@126.com")
as necessary.

Found the following (possibly) invalid file URIs:
  URI: dzhang0716@126.com
    From: man/rARS.Rd
  URI: dzhang0716@126.com
    From: man/rASS.Rd
  URI: dzhang0716@126.com
    From: man/rCCARS.Rd
  URI: dzhang0716@126.com
    From: man/rMARS.Rd
Maintainer: ‘Julia Fukuyama <julia.fukuyama@gmail.com>’

The Description field contains
  <arXiv:1702.00501>. The package also includes functionality for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andreas Scheidegger <andreas.scheidegger@eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andreas",
                      family = "Scheidegger",
                      role = c("aut", "cre"),
                      email = "andreas.scheidegger@eawag.ch"),
               person(role = "aut",
                      email = "andreas.scheidegger@eawag.ch"),
               person(role = "aut",
                      email = "scheidegger.a@gmail.com"))
as necessary.
Maintainer: ‘Lihua Lei <lihua.lei@berkeley.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  (2016) <arXiv:1609.06035>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) adapt.Rd:46: Lost braces
    46 | \item{qvals}{a vector of values in [0, 1]U{Inf}. Q-values. See Details}
       |                                           ^
checkRd: (-1) corr_lfdr.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ctgm_lfdr.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ctgm_lfdr.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot_2d.Rd:40: Lost braces; missing escapes or markup?
    40 | \code{plot_2d_lfdr} gives the contour plot of local FDR estimates when all p-values are equal to \code{targetp}. It is recommended to run \code{plot_2d_lfdr} for multiple \code{targetp}'s ranging from {0.001, 0.005, 0.01, 0.05}.
       |                                                                                                                                                                                                          ^
Maintainer: ‘Samuel A Danziger <sam.danziger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "A"),
                    family = "Danziger",
                    role = c("aut", "cre"),
                    email = "sam.danziger@gmail.com")
as necessary.
checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^
Maintainer: ‘Mark Culp <mvculp@mail.wvu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mark",
                      family = "Culp",
                      role = c("aut", "cre"),
                      email = "mvculp@mail.wvu.edu"),
               person(given = "Kjell",
                      family = "Johnson",
                      role = "aut"),
               person(given = "George",
                      family = "Michailidis",
                      role = "aut"))
as necessary.
checkRd: (-1) ada.Rd:171: Escaped LaTeX specials: \&
Maintainer: ‘Pengyi Yang <yangpy7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pengyi",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yangpy7@gmail.com")
as necessary.
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The BugReports field in DESCRIPTION has
  https://github.com/unina-sfere/adass
which should likely be
  https://github.com/unina-sfere/adass/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AdbiConnection-class.Rd: DBIConnection-class, DBIDriver-class
  AdbiDriver-class.Rd: dbConnect, DBIDriver-class, DBIConnection-class
  AdbiResult-class.Rd: DBIResult-class, DBIObject-class,
    DBIDriver-class, DBIConnection-class
  AdbiResultArrow-class.Rd: DBIResultArrow-class, DBIResult-class,
    DBIObject-class, DBIDriver-class, DBIConnection-class
  dbConnect.Rd: DBIDriver-class, DBIConnection-class, dbConnect,
    dbDisconnect
  dbFetch.Rd: dbFetch, DBIResult-class
  dbSendQuery.Rd: dbSendQuery, dbGetQuery, DBIConnection-class, dbBind,
    DBIResult-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yalin",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "yalin.zhu@outlook.com")
as necessary.
Maintainer: ‘Petr Simecek <simecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marie",
                      family = "Simeckova",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Rusch",
                      role = "aut"),
               person(given = "Petr",
                      family = "Simecek",
                      role = "cre",
                      email = "simecek@gmail.com"))
as necessary.
Maintainer: ‘Mark W. Donoghoe <markdonoghoe@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yili Hong <yilihong@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yili",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "yilihong@vt.edu"),
               person(given = "Yimeng",
                      family = "Xie",
                      role = "aut"),
               person(given = "Zhongnan",
                      family = "Jin",
                      role = "aut"),
               person(given = "Caleb",
                      family = "King",
                      role = "aut"))
as necessary.
Maintainer: ‘Marta Karas <marta.karass@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
segmentWalking 4.468  0.225   5.624
 OK
user system elapsed
pso 8.962  0.001  10.667
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘IntervalEstimator-class.Rd’ ‘PValue-class.Rd’
    ‘PointEstimator-class.Rd’ ‘analyze.R’ ‘estimators.R’
    ‘evaluate_estimator.R’ ‘fisher_information.R’
    ‘integrate_over_sample_space.R’ ‘mle_distribution.R’ ‘n2c2_helpers.R’
    ‘plot.R’ ‘print.R’ ‘reference_implementation.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘blocks.R’ ‘compress.R’ ‘connect_adf.R’ ‘demo.R’ ‘device_create.R’
    ‘entry_info.R’ ‘helpers.R’ ‘move.R’ ‘move.Rd’ ‘s3_conn.R’
    ‘s3_methods.R’ ‘virtual_path.R’
Maintainer: ‘Carlos J. Gil Bellosta <cgb@datanalytics.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "J.", "Gil"),
                    family = "Bellosta",
                    role = c("aut", "cre"),
                    email = "cgb@datanalytics.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Dan Dediu <ddediu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) med.groups.Rd:20: Lost braces; missing escapes or markup?
    20 | medication groups using the construction \emph{"{NAME}"}.
       |                                                 ^
checkRd: (-1) med.groups.Rd:26: Lost braces; missing escapes or markup?
    26 | Another example is "NotVita" defined as "(!{Vitamines})", which selects all
       |                                            ^
Maintainer: ‘Dan Dediu <ddediu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sandrine Pavoine <sandrine.pavoine@mnhn.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sandrine",
                    family = "Pavoine",
                    role = c("aut", "cre"),
                    email = "sandrine.pavoine@mnhn.fr")
as necessary.
Maintainer: ‘E. F. Haghish <haghish@uio.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("E.", "F."),
                    family = "Haghish",
                    role = c("aut", "cre"),
                    email = "haghish@uio.no")
as necessary.
user system elapsed
boot.adjroc 5.843  0.026   6.850
boot.roc    4.544  0.051   5.505
 OK
'::' or ':::' import not declared from: ‘devtools’
'library' or 'require' calls not declared from:
  ‘ggmap’ ‘gridExtra’ ‘magick’
user system elapsed
derive_param_confirmed_bor  4.714  0.056   6.182
derive_param_confirmed_resp 4.580  0.047   6.667
 OK
user system elapsed
derive_var_joined_exist_flag 5.29  0.022   6.778
 OK
Maintainer: ‘David Ardia <david.ardia.ch@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Polina Bombina <pbombina@crimson.ua.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Brendan",
                      family = "Ames",
                      role = "aut",
                      email = "bpames@ua.edu"),
               person(given = "Polina",
                      family = "Bombina",
                      role = c("aut", "cre"),
                      email = "pbombina@crimson.ua.edu"))
as necessary.

The Description field contains
  sampled binary matrix, Bombina et al. (2019) <arXiv:1904.03272>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Adrian Timpson <a.timpson@ucl.ac.uk>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Cole Monnahan <monnahc@uw.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cm_formula.R’ ‘tag_add.R’
Maintainer: ‘Yifan (Ethan) Xu <ethan.yifanxu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  http://smm.sagepub.com/content/early/2015/10/15/0962280215609948.abstract.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Pankaj Bhatlawande <pbhatlawande@merkleinc.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pankaj",
                    family = "Bhatlawande",
                    role = c("aut", "cre"),
                    email = "pbhatlawande@merkleinc.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  kdfun.Rd: divc
  krfun.Rd: divc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jader Lugon Junior <jlugonjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jader", "Lugon"),
                      family = "Junior",
                      role = c("aut", "cre"),
                      email = "jlugonjr@gmail.com"),
               person(given = c("Pedro", "Paulo", "Gomes", "Watts"),
                      family = "Rodrigues",
                      role = "aut"),
               person(given = "Luiz",
                      family = "Bevilacqua",
                      role = "aut"),
               person(given = c("Gisele", "Moraes"),
                      family = "Marinho",
                      role = "aut"),
               person(given = c("Diego", "Campos"),
                      family = "Knupp",
                      role = "aut"),
               person(given = c("Joao", "Flavio", "Vieira"),
                      family = "Vasconcellos",
                      role = "aut"),
               person(given = c("Antonio", "Jose", "da", "Silva"),
                      family = "Neto.",
                      role = "aut"))
as necessary.
Maintainer: ‘Murray Cox <murray.p.cox@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean",
                      family = "Sanderson",
                      role = "aut"),
               person(given = "Murray",
                      family = "Cox",
                      role = "cre",
                      email = "murray.p.cox@gmail.com"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘admix.Rd’:
    https://doi.org/10.1534/genetics.115.176842
    https://doi.org/10.1101/gr.083634.108
  File ‘plotsignal.Rd’:
    https://doi.org/10.1534/genetics.115.176842
  File ‘signal.Rd’:
    https://doi.org/10.1534/genetics.115.176842
  File ‘wavesum.Rd’:
    https://doi.org/10.1534/genetics.115.176842
user system elapsed
get_series 0.933  0.125   5.253
 OK
user system elapsed
autoplot          7.557  0.219  10.594
plot              5.941  0.003   7.409
predict.tsd_onset 5.147  0.004   7.539
 OK
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  <arXiv:2007.02266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) count_cases.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitaep.Rd:14: Lost braces
    14 | \item A sequence of goodness-of-fit measures consist of Akaike Information Criterion (\code{AIC}), Consistent Akaike Information Criterion (\code{CAIC}), Bayesian Information Criterion (\code{BIC}), Hannan-Quinn information criterion (\code{HQIC}), Anderson-Darling (\code{AD}), Cram\'{e}er-von Misses (\code{CVM}), Kolmogorov-Smirnov (\code{KS}), and log-likelihood (\code{log-likelihood}) statistics.
       |                                                                                                                                                                                                                                                                                              ^
Maintainer: ‘"Jose Oteros" <OterosJose@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesus",
                      family = "Rojo",
                      role = "aut",
                      email = "Jesus.Rojo@uclm.es"),
               person(given = "Antonio",
                      family = "Picornell",
                      role = "aut",
                      email = "picornell@uma.es"),
               person(given = "Jose",
                      family = "Oteros",
                      role = "aut",
                      email = "OterosJose@gmail.com"),
               person(given = "\"Jose",
                      family = "Oteros\"",
                      role = "cre",
                      email = "OterosJose@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following files/directories:
  ‘table_AeRobiology’
Maintainer: ‘Mark Hogue <mark.hogue.chp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Hogue",
                    role = c("aut", "cre"),
                    email = "mark.hogue.chp@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘report_basic.R’ ‘report_cum_plots.R’ ‘report_log_mass.R’
    ‘report_plots.R’ ‘set_params_2.R’
Running ‘Ch-Basics.R’ [2s/3s]
  Comparing ‘Ch-Basics.Rout’ to ‘Ch-Basics.Rout.save’ ... OK
  Running ‘Ch-Intro.R’ [2s/3s]
  Comparing ‘Ch-Intro.Rout’ to ‘Ch-Intro.Rout.save’ ... OK
  Running ‘Ch-LinearRegression.R’ [4s/6s]
  Comparing ‘Ch-LinearRegression.Rout’ to ‘Ch-LinearRegression.Rout.save’ ...46,51c46,51
<  Min.   :   2   Min.   :  20   Min.   : 0.00522  
<  1st Qu.:  52   1st Qu.: 134   1st Qu.: 0.46449  
<  Median : 122   Median : 282   Median : 1.32051  
<  Mean   : 197   Mean   : 418   Mean   : 2.54846  
<  3rd Qu.: 268   3rd Qu.: 541   3rd Qu.: 3.44017  
<  Max.   :1098   Max.   :2120   Max.   :24.45946  
---
>  Min.   :   2   Min.   :  20   Min.   : 0.005  
>  1st Qu.:  52   1st Qu.: 134   1st Qu.: 0.464  
>  Median : 122   Median : 282   Median : 1.321  
>  Mean   : 197   Mean   : 418   Mean   : 2.548  
>  3rd Qu.: 268   3rd Qu.: 541   3rd Qu.: 3.440  
>  Max.   :1098   Max.   :2120   Max.   :24.459  
886c886
< -0.619068 -0.025568  0.000000 -0.000134  0.033201  0.641027 
---
> -0.6191 -0.0256  0.0000 -0.0001  0.0332  0.6410 
  Running ‘Ch-Microeconometrics.R’ [2s/3s]
  Comparing ‘Ch-Microeconometrics.Rout’ to ‘Ch-Microeconometrics.Rout.save’ ... OK
  Running ‘Ch-Programming.R’ [17s/20s]
  Comparing ‘Ch-Programming.Rout’ to ‘Ch-Programming.Rout.save’ ... OK
  Running ‘Ch-TimeSeries.R’ [3s/4s]
  Comparing ‘Ch-TimeSeries.Rout’ to ‘Ch-TimeSeries.Rout.save’ ... OK
  Running ‘Ch-Validation.R’ [62s/76s]
  Comparing ‘Ch-Validation.Rout’ to ‘Ch-Validation.Rout.save’ ... OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘colour_table.R’ ‘save_govuk.Rd’
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Hsiao-Ting Huang <nikkihuang309700034@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hsiao-Ting",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "lchen723@nccu.edu.tw")
as necessary.
checkRd: (-1) estimate.affinity.matrix.Rd:31: Lost braces; missing escapes or markup?
    31 | than \code{Y}, then those variables that appear in \code{X} but no in {Y}
       |                                                                       ^
checkRd: (-1) estimate.affinity.matrix.lowrank.Rd:36: Lost braces; missing escapes or markup?
    36 | \code{Y}, then those variables that appear in \code{X} but no in {Y} should
       |                                                                  ^
checkRd: (-1) show.correlations.Rd:47: Lost braces
    47 | code{ndims} dimensions. Defaults to all dimensions unless the latter are
       |     ^
user system elapsed
domath 5.637  0.535   7.614
 OK
Maintainer: ‘Elisabeth Dahlqwist <elisabeth.dahlqwist88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elisabeth",
                    family = "Dahlqwist",
                    role = c("aut", "cre"),
                    email = "elisabeth.dahlqwist88@gmail.com")
as necessary.
checkRd: (-1) getNetworkGridLayout.Rd:6-11: Lost braces
     6 | getCoordinatesFromVertexId2<-function(AFMImage, vId) {
       |                                                      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AFM.Rd: gstat, fractaldim, rgl
  AFMFractalDimensionAnalyser-getFractalDimensions.Rd: fractaldim
  AFMImageFractalDimensionMethod-class.Rd: fractaldim
  AFMImageNetworksAnalysis-class.Rd: igraph
  AFMImageVariogramAnalysis-evaluateVariogramModels-method.Rd: gstat
  displayHolesIn3D.Rd: rgl
  displayIn3D.Rd: rgl
  exportToSTL.Rd: rgl
  getCircleSpatialPoints.Rd: SpatialPoints
  putImagesFromAnalysisOnDisk.Rd: rgl
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Rafael Benitez <rabesua@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rafael",
                      family = "Benitez",
                      role = c("aut", "cre"),
                      email = "rabesua@uv.es"),
               person(given = c("Vicente", "Jose"),
                      family = "Bolos",
                      role = "aut"),
               person(given = "Jose-Luis",
                      family = "Toca-Herrera",
                      role = "aut"))
as necessary.
Maintainer: ‘Elisabeth Dahlqwist <elisabeth.dahlqwist88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elisabeth",
                      family = "Dahlqwist",
                      role = c("aut", "cre"),
                      email = "elisabeth.dahlqwist88@gmail.com"),
               person(given = "Arvid",
                      family = "Sjolander",
                      role = "aut"))
as necessary.
user system elapsed
AFcoxph 7.812  0.086   5.307
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘am_data.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘generate_workbook.Rd’
user system elapsed
wbyscrku 7.216  0.054   9.038
rglwbysu 6.776  0.037   8.460
wbyAgmv  4.719  0.110   5.650
 OK
Maintainer: ‘Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>’

The Description field contains
  Maillard, Sylvain Arlot, Matthieu Lerasle (2021) <arXiv:1909.04890>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Matthias Bogaert <matthias.bogaert@ugent.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthias",
                      family = "Bogaert",
                      role = c("aut", "cre"),
                      email = "matthias.bogaert@ugent.be"),
               person(given = "Michel",
                      family = "Ballings",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Maintainer: ‘Lynn Yi <lynnyi@caltech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lynn",
                      family = "Yi",
                      role = c("aut", "cre"),
                      email = "lynnyi@caltech.edu"),
               person(given = "Lior",
                      family = "Pachter",
                      role = "aut"))
as necessary.
Maintainer: ‘Alex Stringer <alex.stringer@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Stringer",
                    role = c("aut", "cre"),
                    email = "alex.stringer@uwaterloo.ca")
as necessary.

The Description field contains
  Package" <arXiv:2101.04468>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kenji Kondo <kkondo.odnokk@gmail.com>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AccurateGLM-class.Rd: cv.glmnet
  coef.AccurateGLM.Rd: coef.glmnet
  predict.AccurateGLM.Rd: predict.glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Dai Feng <daifeng.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dai",
                    family = "Feng",
                    role = c("aut", "cre"),
                    email = "daifeng.stat@gmail.com")
as necessary.
Maintainer: ‘Felipe de Mendiburu <fmendiburu@lamolina.edu.pe>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Felipe",
                    family = "de Mendiburu",
                    role = c("aut", "cre"),
                    email = "fmendiburu@lamolina.edu.pe")
as necessary.
Maintainer: ‘Chun-Han Lee <d10621201@ntu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chun-Han", "Lee"),
                      family = "<lyliu@ntu.edu.tw>",
                      role = "aut",
                      email = "lyliu@ntu.edu.tw"),
               person(given = "Chun-Han",
                      family = "Lee",
                      role = "cre",
                      email = "d10621201@ntu.edu.tw"))
as necessary.
Maintainer: ‘Rodney Edmondson <rodney.edmondson@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘agriTutorial.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example1.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example2.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example3.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example4.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example5.Rd’:
    http://dx.doi.org/10.1111/jac.12267
Maintainer: ‘Didier Ruedin <didier.ruedin@unine.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Didier",
                    family = "Ruedin",
                    role = c("ctb", "aut", "cre"),
                    email = "didier.ruedin@unine.ch")
as necessary.
Maintainer: ‘Anna Cheshkova <cheshanf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anna",
                    family = "Cheshkova",
                    role = c("aut", "cre"),
                    email = "cheshanf@gmail.com")
as necessary.
Maintainer: ‘Berent Ånund Strømnes Lunde <lundeberent@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Berent", "Ånund", "Strømnes"),
                    family = "Lunde",
                    role = c("aut", "cre"),
                    email = "lundeberent@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
'::' or ':::' import not declared from: ‘xgboost’
'library' or 'require' calls not declared from:
  ‘ISLR’ ‘dplyr’ ‘ggplot2’ ‘glmnet’ ‘gridExtra’ ‘lightgbm’
  ‘randomForest’ ‘xgboost’
Maintainer: ‘Anders Gorst-Rasmussen <agorstras@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
color_ramps 6.092  0.156   7.587
 OK
Maintainer: ‘Chengyuan Lu <c.lu@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chengyuan",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "c.lu@lumc.nl")
as necessary.

The Description field contains
  Lu(2021) <arXiv:2004.06156>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
user system elapsed
fit 4.708  0.129   5.965
 OK
Maintainer: ‘Amarnath Bose <amarnath.bose@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Amarnath",
                    family = "Bose",
                    role = c("aut", "cre"),
                    email = "amarnath.bose@gmail.com",
                    comment = c(ORCID = "0000-0003-1560-6745"))
as necessary.
Maintainer: ‘Abdisalam Hassan Muse <abdisalam.h.muse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Authors@R.",
                      family = "c)",
                      role = "aut",
                      comment = "\"aut\", \"ctb\",\"cre\""),
               person(family = "person)",
                      role = "aut",
                      comment = "\"ctb\""),
               person(family = "person)",
                      role = "aut",
                      comment = "\"ctb\""),
               person(given = "person)",
                      family = ")",
                      role = "aut",
                      comment = "\"ctb\""),
               person(given = c("Abdisalam", "Hassan"),
                      family = "Muse",
                      role = "cre",
                      email = "abdisalam.h.muse@gmail.com"))
as necessary.
checkRd: (-1) AEHMLE.Rd:42-45: Lost braces
    42 | \item{basehaz}{: {baseline hazard structure including baseline
       |                  ^
checkRd: (-1) AHMLE.Rd:41-43: Lost braces
    41 | \item{basehaz}{: {baseline hazard structure including baseline
       |                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  addNoiseAtEventTimes.Rd: data.table
  makeContWeights.Rd: data.table
  weightPredict.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
makeContWeights 20.133  0.286  13.479
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘akaike_adjusted_rsq.R’ ‘filter_vif.R’ ‘fit_models.R’
    ‘select_models.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AICc_permanova2.Rd: adonis2
  fit_models.Rd: vegdist, adonis2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Greg Gloor <ggloor@uwo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Gloor",
                    role = c("aut", "cre"),
                    email = "ggloor@uwo.ca")
as necessary.
Maintainer: ‘Andreas Pfeiffer <apfeiffer1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Pfeiffer",
                    role = c("aut", "cre"),
                    email = "apfeiffer1@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ability_agreement.R’ ‘ability_ai.R’ ‘ability_compute_bounds.R’
    ‘ability_compute_stats.R’ ‘ability_human.R’
    ‘ability_human_override.R’ ‘ability_preference.R’
user system elapsed
TestMonotonicityRE 3.786  0.091   5.169
 OK
checkRd: (-1) aimPlot.Rd:39: Lost braces; missing escapes or markup?
    39 |  \item \code{Variable} {1st column: The various aims to be completed}
       |                        ^
checkRd: (-1) aimPlot.Rd:40: Lost braces; missing escapes or markup?
    40 |  \item \code{Percentage} {2nd column: The percentage of completeness}
       |                          ^
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Joe Roe [aut] (<https://orcid.org/0000-0002-1011-1244>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Joe Roe [aut] (ORCID: <https://orcid.org/0000-0002-1011-1244>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.GRiwrm.R’
checkRd: (-1) get_airnow_area.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{parameters}{Parameter(s) to return data for. Choices are PM_{2.5}
       |                                                                   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gateway_keyring.R’ ‘gateway_openai.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘airship.R’
Maintainer: ‘Santos J. González-Rojí <santosjose.gonzalez@ehu.eus>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jon",
                      family = "Sáenz",
                      role = "aut"),
               person(given = c("Santos", "J."),
                      family = "González-Rojí",
                      role = c("aut", "cre"),
                      email = "santosjose.gonzalez@ehu.eus"),
               person(given = "Sheila",
                      family = "Carreno-Madinabeitia",
                      role = "aut"),
               person(given = "Gabriel",
                      family = "Ibarra-Berastegi",
                      role = "aut"))
as necessary.

File 'R/aiRthermo-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Found the following files/directories:
  ‘stuve.pdf’
user system elapsed
SAM         5.382  0.494   6.685
modeled_isf 5.029  0.330   7.274
modeled_dqt 4.902  0.387   6.209
show.sam    4.927  0.345   7.046
aniso_SAM   4.160  0.178   5.128
 OK
Maintainer: ‘W. E. Wansouwé <ericwansouwe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("W.", "E."),
                      family = "Wansouwé",
                      role = c("aut", "cre"),
                      email = "ericwansouwe@gmail.com"),
               person(given = c("S.", "M."),
                      family = "Somé",
                      role = "aut"),
               person(given = c("C.", "C."),
                      family = "Kokonendji",
                      role = "aut"))
as necessary.

The URL field contains the following bad parts:
  www.r-project.org
The URL field should be a list of URLs separated by commas or
whitespace.
checkRd: (-1) plot.dke.fun.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item{las}{ Numeric in {0,1,2,3}; the style of axis labels. 
       |                          ^
checkRd: (-1) interpp.Rd:119: Lost braces
   119 |   If \code{linear} is \\code{TRUE}, linear
       |                             ^
Maintainer: ‘Zichao Li <lizichao@live.unc.edu>’

The Description field contains
  and Li (2020) <arXiv:2009.04550>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ravi Varadhan <ravi.varadhan@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ravi",
                    family = "Varadhan",
                    role = c("aut", "cre"),
                    email = "ravi.varadhan@jhu.edu",
                    comment = "with contributions from Gabor Grothendieck")
as necessary.
checkRd: (-1) buildPhylipLineage.Rd:61: Lost braces; missing escapes or markup?
    61 |                                      names with the format {"Inferred1", "Inferred2", ...}.
       |                                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gridPlot.Rd: ggplot
  plotAbundanceCurve.Rd: ggplot
  plotDiversityCurve.Rd: ggplot
  plotDiversityTest.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_plan_stats.R’
Maintainer: ‘Daewoo Pak <heavyrain.pak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenxi",
                      family = "Li",
                      role = "aut"),
               person(given = "Daewoo",
                      family = "Pak",
                      role = c("aut", "cre"),
                      email = "heavyrain.pak@gmail.com"),
               person(given = "David",
                      family = "Todem",
                      role = "aut"))
as necessary.
Maintainer: ‘Kamil Erguler <k.erguler@cyi.ac.cy>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kamil",
                    family = "Erguler",
                    role = c("aut", "cre"),
                    email = "k.erguler@cyi.ac.cy")
as necessary.
Maintainer: ‘Luis Benites Sanchez <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Benites"),
                      family = "Sanchez",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"),
               person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"))
as necessary.
Maintainer: ‘Dan Apley <apley@northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dan",
                    family = "Apley",
                    role = c("aut", "cre"),
                    email = "apley@northwestern.edu")
as necessary.

File 'R/ALEPlot-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘George Rosenberger <gr2578@cumc.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "George",
                      family = "Rosenberger",
                      role = c("aut", "cre"),
                      email = "gr2578@cumc.columbia.edu"),
               person(given = "Hannes",
                      family = "Roest",
                      role = "aut"),
               person(given = "Christina",
                      family = "Ludwig",
                      role = "aut"),
               person(given = "Ruedi",
                      family = "Aebersold",
                      role = "aut"),
               person(given = "Lars",
                      family = "Malmstroem",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
checkRd: (-1) ALF.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) APEXMS.Rd:14: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) APEXMS.Rd:15: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Roy Wetherall <rwetherall@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Roy",
                    family = "Wetherall",
                    role = c("aut", "cre"),
                    email = "rwetherall@gmail.com")
as necessary.
Maintainer: ‘Jan Wolfertz <Jan.wolfertz@uni-duesseldorf.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jan",
                    family = "Wolfertz",
                    role = c("aut", "cre"),
                    email = "jan.wolfertz@uni-duesseldorf.de")
as necessary.
checkRd: (-1) optimalfrequency.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:31: Escaped LaTeX specials: \$
Maintainer: ‘Robert Fulton <rfulton@algorithmia.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Sutton",
                      role = "aut"),
               person(given = "James",
                      family = "Athappilly",
                      role = "aut"),
               person(given = "Taylor",
                      family = "Raack",
                      role = "aut"),
               person(given = "Robert",
                      family = "Fulton",
                      role = "cre",
                      email = "rfulton@algorithmia.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lambda_functions.R’ ‘likelihood-space.R’ ‘snc.R’
user system elapsed
Alignment 6.543  0.346   8.919
 OK
Maintainer: ‘Cedric Hagen <ch0934@princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cedric",
                    family = "Hagen",
                    role = c("aut", "cre"),
                    email = "ch0934@princeton.edu")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Maintainer: ‘Nathan Medina-Rodriguez <nathan.medina@ulpgc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nathan",
                      family = "Medina-Rodriguez",
                      role = c("aut", "cre"),
                      email = "nathan.medina@ulpgc.es"),
               person(given = "Angelo",
                      family = "Santana",
                      role = "aut"))
as necessary.
Maintainer: ‘Todd Cross <todd.cross@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Galpern",
                      role = "aut",
                      email = "pgalpern@gmail.com"),
               person(given = "Todd",
                      family = "Cross",
                      role = "cre",
                      email = "todd.cross@gmail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  amCluster.Rd: dynamicTreeCut, cutreeHybrid
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Emily Weiser <emily.l.weiser@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emily", "L."),
                      family = "Weiser",
                      role = "aut"),
               person(given = "Emily",
                      family = "Weiser",
                      role = "cre",
                      email = "emily.l.weiser@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) allestimates.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:28: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Dr. Sandip Garai <sandipnicksandy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dr.", "Sandip"),
                    family = "Garai",
                    role = c("aut", "cre"),
                    email = "sandipnicksandy@gmail.com")
as necessary.
checkRd: (-1) compare_cohorts.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_cohorts.Rd:36: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ville-Petteri Makinen <vpmakine@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ville-Petteri",
                    family = "Makinen",
                    role = c("aut", "cre"),
                    email = "vpmakine@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘episodes.Rd’ ‘loadouts.Rd’ ‘seasons.Rd’ ‘survivalists.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cleanse.data.frame.Rd: tbl_df
  split_by.data.frame.Rd: tbl_df
  treatment_corr.Rd: tbl_df
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Amrei Stammann <amrei.stammann@rub.de>’

The Description field contains
  described in Stammann (2018) <arXiv:1707.01815> and is restricted to
  and Wanner (2020) <arXiv:2004.12655>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Edward Lee <email.edwardlee@gmail.com>’

The BugReports field in DESCRIPTION has
  http://github.com/edwardslee/alphabetr
which should likely be
  http://github.com/edwardslee/alphabetr/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘inference.R’ ‘transformers.R’ ‘variance.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  alphaci.Rd: future.apply
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Beatriz Pateiro-Lopez <beatriz.pateiro@usc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Beatriz",
                      family = "Pateiro-Lopez",
                      role = c("aut", "cre"),
                      email = "beatriz.pateiro@usc.es"),
               person(given = "Alberto",
                      family = "Rodriguez-Casal"),
               person(family = ".",
                      role = "aut"))
as necessary.
Maintainer: ‘Jesper Wulff <jwulff@econ.au.dk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andre Rehage <rehage@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andre",
                      family = "Rehage",
                      role = c("aut", "cre"),
                      email = "rehage@statistik.tu-dortmund.de"),
               person(given = "Sonja",
                      family = "Kuhnt",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘alphaOutlier-package.Rd’:
    \keyword{package
      distribution
      robust}
user system elapsed
aout.kernel 4.976  0.046   6.918
 OK
Maintainer: ‘Beatriz Pateiro-Lopez <beatriz.pateiro@usc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Lafarge",
                      role = "aut"),
               person(given = "Beatriz",
                      family = "Pateiro-Lopez",
                      role = c("aut", "cre"),
                      email = "beatriz.pateiro@usc.es"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.ashape3d.Rd: rgl, material3d
  surfaceNormals.Rd: material3d
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahdi",
                      family = "Teimouri",
                      role = c("aut", "cre"),
                      email = "teimouri@aut.ac.ir"),
               person(given = "Adel",
                      family = "Mohammadpour",
                      role = "aut"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Sanford Weisberg <sandy@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sanford",
                    family = "Weisberg",
                    role = c("aut", "cre"),
                    email = "sandy@umn.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URI:
  URI: www.oecd.org
    From: man/UN11.Rd
checkRd: (-1) UN1.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) rateprof.Rd:64: Escaped LaTeX specials: \&
Maintainer: ‘Dariush Najarzadeh <D_Najarzadeh@sbu.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dariush",
                    family = "Najarzadeh",
                    role = c("aut", "cre"),
                    email = "d_najarzadeh@sbu.ac.ir")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Katharine Mullen <mullenkate@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Katharine", "M."),
                      family = "Mullen",
                      role = "aut"),
               person(given = "Katharine",
                      family = "Mullen",
                      role = "cre",
                      email = "mullenkate@gmail.com"))
as necessary.
user system elapsed
metapb   6.079  0.000   6.787
meta.pen 5.001  0.005   5.510
 OK
checkRd: (-1) altopt.ic.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘calculate_covariates.R’
checkRd: (-1) convertCoord.Rd:32: Lost braces
    32 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
checkRd: (-1) convertCoord.individual.Rd:33: Lost braces
    33 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
checkRd: (-1) getCoord.Rd:39: Lost braces
    39 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
checkRd: (-1) getCoord.individual.Rd:39: Lost braces
    39 | here{https://lbs.amap.com/faq/account/key/72}}
       |     ^
checkRd: (-1) getLocation.Rd:60: Lost braces; missing escapes or markup?
    60 | {https://lbs.amap.com/faq/account/key/72}}
       | ^
checkRd: (-1) getLocation.individual.Rd:60: Lost braces
    60 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
'::' or ':::' import not declared from: ‘bslib’
'library' or 'require' call not declared from: ‘shinyjs’
Specified C++11: please drop specification unless essential
Maintainer: ‘Nils Myszkowski <nmyszkowski@pace.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nils",
                    family = "Myszkowski",
                    role = c("aut", "cre"),
                    email = "nmyszkowski@pace.edu")
as necessary.
Maintainer: ‘Housen Chu <hchu@lbl.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘deltaFibonacciCompress.Rd’ ‘read.AmigaBitmapFont.Rd’
    ‘read.AmigaBitmapFontSet.Rd’ ‘write.AmigaBitmapFont.Rd’
user system elapsed
rasterToIFF 6.243  0.043   8.171
IFFChunk    4.561  0.095   5.930
 OK
user system elapsed
ammiBayes.conf.plot 7.315  0.707   8.471
 OK
Author field differs from that derived from Authors@R
  Author:    ‘B. C. Ajay [aut, cre] (<https://orcid.org/0000-0001-7222-8483>), J. Aravind [aut] (<https://orcid.org/0000-0002-4791-442X>), R. Abdul Fiyaz [aut] (<https://orcid.org/0000-0001-6261-7071>), ICAR [cph] (https://www.icar.org.in)’
  Authors@R: ‘B. C. Ajay [aut, cre] (ORCID: <https://orcid.org/0000-0001-7222-8483>), J. Aravind [aut] (ORCID: <https://orcid.org/0000-0002-4791-442X>), R. Abdul Fiyaz [aut] (ORCID: <https://orcid.org/0000-0001-6261-7071>), ICAR [cph] (url: https://www.icar.org.in)’
Maintainer: ‘Jon Katz <jonkatz4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jon",
                      family = "Katz",
                      role = c("aut", "cre"),
                      email = "jonkatz4@gmail.com"),
               person(given = "Therese",
                      family = "Donovan",
                      role = "aut",
                      email = "tdonovan@uvm.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘simCovariate.Rd’:
    \keyword{datagen,}
Maintainer: ‘Felipe Tumenas Marques <tumenas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Monica",
                      family = "Serra",
                      role = "aut",
                      email = "monicaserra.bio04@gmail.com"),
               person(given = c("Felipe", "Tumenas"),
                      family = "Marques",
                      role = c("aut", "cre"),
                      email = "tumenas@gmail.com"))
as necessary.
checkRd: (-1) aMNLFA.prune.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Oliver Sieber <oliver.sieber@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Felix",
                      family = "Scholkmann",
                      role = "aut",
                      email = "felix.scholkmann@gmail.com"),
               person(given = "Oliver",
                      family = "Sieber",
                      role = "cre",
                      email = "oliver.sieber@gmail.com"))
as necessary.
checkRd: (-1) AmpliconDuo-package.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:40-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:43-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:47-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:50-52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:53-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:56-58: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Adam Elder <shmelder@gmail.com>’

The Description field contains
  A testing framework described in Elder et al. (2022) <arXiv:2203.01897>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  amExample1.Rd: allelematch
  amExample2.Rd: allelematch
  amExample3.Rd: allelematch
  amExample4.Rd: allelematch
  amExample5.Rd: allelematch
  amregtest.Rd: allelematch
  artData.Rd: amDataset, allelematch
  artRun.Rd: allelematch
  artVersion.Rd: allelematch-package
  ggSample.Rd: allelematch
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
extract_covariates 3.901  0.141   5.549
 OK
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘AmyloGram-package.Rd’:
    https://doi.org/10.1038/s41598-017-13210-9
Maintainer: ‘Cedric Landerer <cedric.landerer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Authors@R",
                      role = "aut"),
               person(given = "Cedric",
                      family = "Landerer",
                      role = "cre",
                      email = "cedric.landerer@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Patrick Mair <mair@fas.harvard.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
user system elapsed
DEGS_scANANSE 4.976  0.367   6.373
 OK
Maintainer: ‘Eoghan T O'Halloran <eoghan.ohalloran2@mail.dcu.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tiago", "R"),
                      family = "Magalhaes",
                      role = "aut"),
               person(given = c("Eoghan", "T"),
                      family = "O'Halloran",
                      role = c("aut", "cre"),
                      email = "eoghan.ohalloran2@mail.dcu.ie"))
as necessary.
checkRd: (-1) AncestryMapper2.0-package.Rd:33: Escaped LaTeX specials: \~
checkRd: (-1) AncestryMapper2.0-package.Rd:38: Escaped LaTeX specials: \~
Maintainer: ‘Simon Zimmermann <zimmersi@hu-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Zimmermann",
                    role = c("aut", "cre"),
                    email = "zimmersi@hu-berlin.de")
as necessary.
user system elapsed
anchor_prediction_gam 7.792  0.064    8.88
anchor_regression_gam 7.294  0.032    8.29
 OK
Maintainer: ‘Josh Pasek <josh@joshpasek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josh",
                    family = "Pasek",
                    role = c("aut", "cre"),
                    email = "josh@joshpasek.com")
as necessary.
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Damien R. Farine <damien.farine@ieu.uzh.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Damien", "R."),
                      family = "Farine",
                      role = c("aut", "cre"),
                      email = "damien.farine@ieu.uzh.ch"),
               person(given = "Alfredo",
                      family = "Sanchez-Tojar",
                      role = "aut"))
as necessary.
Maintainer: ‘Samuel Ackerman <smackrmn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Samuel",
                    family = "Ackerman",
                    role = c("aut", "cre"),
                    email = "smackrmn@gmail.com")
as necessary.
checkRd: (-1) EKF_1d_interp_joint.Rd:55: Lost braces; missing escapes or markup?
    55 | Prior 1x1 covariance matrix for predicting x_t from x_{t-1}.
       |                                                       ^
checkRd: (-1) EKF_interp_joint.Rd:65: Lost braces; missing escapes or markup?
    65 | Prior 2x2 covariance matrix for predicting x_t from x_{t-1}.
       |                                                       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  make_segments.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app.R’
checkRd: (-1) animate.Rd:625-627: Lost braces
   625 | group = function(...) {
       |                       ^
Maintainer: ‘Yihui Xie <xie@yihui.name>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
'library' or 'require' calls not declared from:
  ‘Cairo’ ‘fImport’ ‘rgl’ ‘zoo’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘anim-animate.R’ ‘anim-prep-cat.R’ ‘anim-prep.R’ ‘funnel-web-data.R’
    ‘kangaroo-data.R’ ‘kangaroo-plot.R’ ‘proportional-shade.R’
    ‘wallaby-data.R’ ‘wallaby-plot.R’
Maintainer: ‘Bart Lammers <bart.f.lammers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bart",
                    family = "Lammers",
                    role = c("aut", "cre"),
                    email = "bart.f.lammers@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Author field differs from that derived from Authors@R
  Author:    ‘Philipp Angerer [ccp] (<https://orcid.org/0000-0002-0369-2888>, flying-sheep), Alex Wolf [ccp] (<https://orcid.org/0000-0002-8760-7838>, falexwolf), Isaac Virshup [ccp] (ivirshup), Sergei Rybakov [ccp] (Koncopd), Robrecht Cannoodt [aut, cre, cph] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’
  Authors@R: ‘Philipp Angerer [ccp] (ORCID: <https://orcid.org/0000-0002-0369-2888>, github: flying-sheep), Alex Wolf [ccp] (ORCID: <https://orcid.org/0000-0002-8760-7838>, github: falexwolf), Isaac Virshup [ccp] (github: ivirshup), Sergei Rybakov [ccp] (github: Koncopd), Robrecht Cannoodt [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’
checkRd: (-1) concat.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.}
       |                                                                                                                     ^
checkRd: (-1) concat.Rd:35: Lost braces
    35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.}
       |                                                                                                                               ^
checkRd: (-1) concat.Rd:35: Lost braces
    35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.}
       |                                                                                                                                             ^
Maintainer: ‘Samuel R. Borstein <sam@borstein.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Samuel", "R."),
                      family = "Borstein",
                      role = c("aut", "cre"),
                      email = "sam@borstein.com"),
               person(given = "Brian",
                      family = "O'Meara",
                      role = "aut",
                      email = "bomeara@utk.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  annotate.Rd: htmlwidgets
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Fabrizio Maturo <f.maturo@unich.it>’

The BugReports field in DESCRIPTION has
  https://github.com/fabriziomaturo/AnnuityRIR
which should likely be
  https://github.com/fabriziomaturo/AnnuityRIR/issues
instead.
checkRd: (-1) PV_post_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_post_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
Maintainer: ‘Maciel C. Vidal <calebe@ime.usp.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maciel", "C."),
                      family = "Vidal",
                      role = c("aut", "cre"),
                      email = "calebe@ime.usp.br"),
               person(given = "Andre",
                      family = "Fujita",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ANOFA-contrastFrequencies.R’ ‘ANOFA-emFrequencies.R’
user system elapsed
anomaly-package 4.915  0.085   5.738
 OK
Maintainer: ‘Philip Pallmann <p.pallmann@lancaster.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philip",
                    family = "Pallmann",
                    role = c("aut", "cre"),
                    email = "p.pallmann@lancaster.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ANOPA-anopa.R’ ‘ANOPA-contrastProportions.R’ ‘ANOPA-convert.R’
    ‘ANOPA-random.R’
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Philip Agnew <philip.agnew@ird.fr>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘anovir-package.Rd’:
    https://doi.org/10.1101/530709
  File ‘data_blanford.Rd’:
    https://doi.org/10.1186/1475-2875-11-365
  File ‘data_lorenz.Rd’:
    https://doi.org/10.1101/530709
    https://doi.org/10.1111/j.1752-4571.2011.00199.x
    https://doi.org/10.5061/dryad.2s231
  File ‘data_parker.Rd’:
    https://doi.org/10.1111/evo.12418
    https://doi.org/10.5061/dryad.24gq7
Maintainer: ‘Javad Zahiri <zahiri@modares.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Babak",
                      family = "Khorsand",
                      role = "aut",
                      email = "khorsand@yahoo.com"),
               person(given = "Javad",
                      family = "Zahiri",
                      role = "cre",
                      email = "zahiri@modares.ac.ir"))
as necessary.
user system elapsed
AntAngioCOOL 4.76  0.296   5.582
 OK
Maintainer: ‘Guillermo Vinue <Guillermo.Vinue@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guillermo",
                      family = "Vinue",
                      role = c("aut", "cre"),
                      email = "guillermo.vinue@uv.es"),
               person(given = "Irene",
                      family = "Epifanio",
                      role = "aut"),
               person(given = "Amelia",
                      family = "Simo",
                      role = "aut"),
               person(given = c("M.", "Victoria"),
                      family = "Ibanez",
                      role = "aut"),
               person(given = "Juan",
                      family = "Domingo",
                      role = "aut"),
               person(given = "Guillermo",
                      family = "Ayala",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  HartiganShapes.Rd: procGPA
  LloydShapes.Rd: procGPA
  archetypesBoundary.Rd: stepArchetypes, archetypes
  archetypoids.Rd: archetypes, stepArchetypes
  shapes3dShapes.Rd: shapes3d
  stepArchetypesRawData.Rd: stepArchetypes, archetypes
  stepArchetypoids.Rd: stepArchetypes, archetypes
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Af_edge_RMSD.R’ ‘VDJ_3d_properties.R’
checkRd: (-1) PS-methods.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:65-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Sim-Functions.Rd:126: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:127-129: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:135: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:136-137: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:138-140: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:141-143: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Bruno Bodin <bruno.bodin@yale-nus.edu.sg>’

The Description field contains
  by Argiento and De Iorio (2019) <arXiv:1904.09733> and offers a more
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Lorenzo Meninato <lorenzomeninato@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenzo",
                    family = "Meninato",
                    role = c("aut", "cre"),
                    email = "lorenzomeninato@gmail.com")
as necessary.
Maintainer: ‘Renaud Lancelot <renaud.lancelot@cirad.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Lesnoff",
                      role = "aut",
                      email = "matthieu.lesnoff@cirad.fr"),
               person(given = "Renaud",
                      family = "Lancelot",
                      role = c("aut", "cre"),
                      email = "renaud.lancelot@cirad.fr"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jerry Ratcliffe <jhr@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jerry",
                    family = "Ratcliffe",
                    role = c("aut", "cre"),
                    email = "jhr@temple.edu")
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Diogo Silveira Mendonca <diogosmendonca@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Diogo", "Silveira"),
                    family = "Mendonca",
                    role = c("aut", "cre"),
                    email = "diogosmendonca@gmail.com")
as necessary.
user system elapsed
APOTCPlot 4.771  0.329   5.944
 OK
Maintainer: ‘Arden Miller <a.miller@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arden",
                      family = "Miller",
                      role = c("aut", "cre"),
                      email = "a.miller@auckland.ac.nz"),
               person(given = c("Abu", "Zar", "Md."),
                      family = "Shafiullah.",
                      role = "aut"))
as necessary.
user system elapsed
summary.apc  6.485  0.004   7.825
plot.apc     5.841  0.004   6.836
IERpenalties 4.826  0.004   6.654
FDRpenalties 3.954  0.000   5.573
 OK
user system elapsed
apci 5.125  0.541   7.055
 OK
Maintainer: ‘Ulrich Bodenhofer <ulrich@bodenhofer.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ulrich",
                      family = "Bodenhofer",
                      role = c("aut", "cre"),
                      email = "ulrich@bodenhofer.com"),
               person(given = "Johannes",
                      family = "Palme",
                      role = "ctb"),
               person(given = "Chrats",
                      family = "Melkonian",
                      role = "ctb"),
               person(given = "Andreas",
                      family = "Kothmeier",
                      role = "aut"),
               person(given = "Nikola",
                      family = "Kostic",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  apcluster-methods.Rd: dgTMatrix-class, Matrix-class
  conversions.Rd: dgTMatrix-class, sparseMatrix-class, Matrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Yushu Shi <shiyushu2006@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yushu",
                    family = "Shi",
                    role = c("aut", "cre"),
                    email = "shiyushu2006@gmail.com")
as necessary.
checkRd: (-1) apc.indiv.est.model.Rd:142: Lost braces
   142 | For model testing: \code{\link{apc.indiv.model.table}}, code{\link{apc.indiv.compare.direct}}, \code{\link{waldtest}}, \code{\link{linearHypothesis}}
       |                                                             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  apc.indiv.compare.direct.Rd: plm
  apc.indiv.est.model.Rd: plm, svyglm, waldtest, linearHypothesis
  apc.indiv.model.table.Rd: plm, waldtest, linearHypothesis
  apc.plot.data.level.Rd: levelplot, lattice
  apc.plot.fit.residuals.Rd: levelplot, lattice
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Aurelien Chateigner <aurelien.chateigner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aurelien",
                    family = "Chateigner",
                    role = c("aut", "cre"),
                    email = "aurelien.chateigner@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  multidna2alignment.Rd: as.alignment
  multidna2genind.Rd: genind-class, DNAbin2genind
  multidna2multiphyDat.Rd: DNAbin2genind
  plot-multidna-method.Rd: image.DNAbin
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Shaun Wilkinson <shaunpwilkinson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
possible bashism in configure.ac line 32 (should be 'b = a'):
  if test x"${RSysinfoName}" == x"Darwin"; then
  possible bashism in configure.ac line 43 (should be 'b = a'):
     if test x"${hasOpenMP}" == x""; then
user system elapsed
accuracy_sifter 4.811  0.026   6.333
auc             4.209  0.059   6.018
 OK
Maintainer: ‘Joshua P. French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joshua", "P."),
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
checkRd: (-1) predict_adjust.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
user system elapsed
APIS_2n 1.122  0.173  10.872
APIS_3n 0.734  0.010  10.398
 OK
Maintainer: ‘Hans Peter Wolf <pwolf@wiwi.uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hans", "Peter"),
                    family = "Wolf",
                    role = c("aut", "cre"),
                    email = "pwolf@wiwi.uni-bielefeld.de")
as necessary.
checkRd: (-1) iconplot.Rd:172: Lost braces
   172 |     the height of the area containing the panels and a margin of size code{100 * 0.1} 
       |                                                                           ^
Maintainer: ‘Quinten Stokkink <q.a.stokkink@tudelft.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Quinten",
                    family = "Stokkink",
                    role = c("aut", "cre"),
                    email = "q.a.stokkink@tudelft.nl")
as necessary.
Found the following calls to attach():
File ‘apollo/R/apollo_attach.R’:
  attach(as.list(apollo_beta), warn.conflicts = FALSE)
  attach(database, warn.conflicts = FALSE)
  attach(draws, warn.conflicts = FALSE)
  attach(randcoeff, warn.conflicts = FALSE)
  attach(lcpars, warn.conflicts = FALSE)
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Eisuke Inoue <eisuke.inoue@marianna-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eisuke",
                      family = "Inoue",
                      role = c("aut", "cre"),
                      email = "eisuke.inoue@marianna-u.ac.jp"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Max",
                      family = "Kuhn",
                      role = c("aut", "cre"),
                      email = "mxkuhn@gmail.com"),
               person(given = "Kjell",
                      family = "Johnson",
                      role = "aut"))
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robin", "K.", "S."),
                    family = "Hankin",
                    role = c("aut", "cre"),
                    email = "hankin.robin@gmail.com")
as necessary.
Maintainer: ‘Bikram Karmakar <bkarmakar@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bikram",
                    family = "Karmakar",
                    role = c("aut", "cre"),
                    email = "bkarmakar@ufl.edu")
as necessary.
Maintainer: ‘Marco D. Visser <marco.d.visser@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marco", "D."),
                    family = "Visser",
                    role = c("aut", "cre"),
                    email = "marco.d.visser@gmail.com")
as necessary.
Maintainer: ‘Hengrui Cai <hengruicai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hengrui",
                      family = "Cai",
                      role = c("aut", "cre"),
                      email = "hengruicai@gmail.com"),
               person(given = "Yan",
                      family = "Yuan",
                      role = "aut",
                      email = "yyuan@ualberta.ca"),
               person(given = c("Qian", "Michelle"),
                      family = "Zhou",
                      role = "aut",
                      email = "qz70@msstate.edu"),
               person(given = "Bingying",
                      family = "Li",
                      role = "aut",
                      email = "dorisli1120@gmail.com"))
as necessary.
Found the following files/directories:
  ‘APBinary_PPV.csv’ ‘APBinary_TPF.csv’
  ‘APBinary_ap_summary(method=perturbation,B=1500).csv’
  ‘APBinary_auc_summary(method=perturbation,B=1500).csv’
  ‘APSurv_PPV.csv’ ‘APSurv_TPF.csv’
  ‘APSurv_ap_summary(method=bootstrap,B=500).csv’
  ‘APSurv_auc_summary(method=bootstrap,B=500).csv’
  ‘CompareAP_Binary_dap_summary(method=none).csv’
  ‘CompareAP_Survival_dap_summary(method=bootstrap,B=500).csv’
user system elapsed
age_pyramid 4.511  0.133   6.622
 OK
user system elapsed
isolate.signal 4.439  0.117   5.724
 OK
Maintainer: ‘John Lawson <lawsonjsl7net@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Lawson",
                    role = c("aut", "cre"),
                    email = "lawsonjsl7net@gmail.com")
as necessary.
Maintainer: ‘Karline Soetaert <Karline.Soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andreas", "F."),
                      family = "Hofmann",
                      role = "aut"),
               person(given = "Karline",
                      family = "Soetaert",
                      role = c("aut", "cre"),
                      email = "karline.soetaert@nioz.nl"),
               person(given = c("Filip", "J.R."),
                      family = "Meysman",
                      role = "aut"),
               person(given = "Mathilde",
                      family = "Hagens",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rich Nielsen <rnielsen@mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rich",
                    family = "Nielsen",
                    role = c("aut", "cre"),
                    email = "rnielsen@mit.edu")
as necessary.
checkRd: (-1) getages.Rd:11: Lost braces; missing escapes or markup?
    11 | containing the amalgamated $^{40}$Ar$^*$/$^{39}$Ar$_K$-ratios and
       |                              ^
checkRd: (-1) getages.Rd:11: Lost braces; missing escapes or markup?
    11 | containing the amalgamated $^{40}$Ar$^*$/$^{39}$Ar$_K$-ratios and
       |                                            ^
Maintainer: ‘Fernanda L. Schumacher <fernandalschumacher@gmail.com>’

The Description field contains
  innovations. arXiv preprint <arXiv:2110.00224>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.InfDiag.Rd: ggplot
  plot.Rd: ggplot
  plot.residARpCRM.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ActivityEvents-class.Rd: TimeSeries-class
  ArchaeoPhases-package.Rd: TimeScale-class
  CumulativeEvents-class.Rd: TimeSeries-class
  activity.Rd: TimeScale-class
  as_events.Rd: TimeScale-class
  as_phases.Rd: TimeScale-class
  bury.Rd: TimeScale-class
  data.frame.Rd: TimeScale-class
  interval_credible.Rd: TimeScale-class
  interval_hdr.Rd: TimeScale-class
  occurrence.Rd: TimeScale-class
  plot_events.Rd: TimeScale-class
  plot_phases.Rd: TimeScale-class
  read_bcal.Rd: TimeScale-class
  read_chronomodel.Rd: TimeScale-class
  read_oxcal.Rd: TimeScale-class
  summary.Rd: TimeScale-class
  tempo.Rd: TimeScale-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘David L. Carlson <dcarlson@tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "L."),
                      family = "Carlson",
                      role = c("aut", "cre"),
                      email = "dcarlson@tamu.edu"),
               person(given = "Georg",
                      family = "Roth",
                      role = "ctb"))
as necessary.
Unknown package ‘cxhull’ in Rd xrefs
Maintainer: ‘Michael Korvink <mkorvink@protonmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Manuel J. A. Eugster <manuel@mjae.net>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as.archetypes.Rd: parameters
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘mvtnorm’
Maintainer: ‘Benjamin M Delory <Benjamin.Delory@leuphana.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "M"),
                      family = "Delory",
                      role = c("aut", "cre"),
                      email = "benjamin.delory@leuphana.de"),
               person(given = "Caroline",
                      family = "Baudson",
                      role = "aut"),
               person(given = "Yves",
                      family = "Brostaux",
                      role = "aut"),
               person(given = "Guillaume",
                      family = "Lobet",
                      role = "aut"),
               person(given = c("Patrick", "du"),
                      family = "Jardin",
                      role = "aut"),
               person(given = "Loic",
                      family = "Pages",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Delaplace",
                      role = "aut"))
as necessary.
Maintainer: ‘Marcin Kosinski <m.p.kosinski@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: OAuth application on GitHub
    From: man/archivist-github-integration.Rd
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  addHooksToPrintGitHub.Rd: Repository, archivist-package, alink,
    addHooksToPrint
  archive.Rd: Repository, saveToLocalRepo, md5hash, alink, aoptions
  archivist-github-integration.Rd: Repository
  createGitHubRepo.Rd: createLocalRepo, Repository, oauth2.0_token,
    Tags
  deleteGitHubRepo.Rd: Repository, oauth2.0_token
  pushGitHubRepo.Rd: Repository
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
ahistory 2.773  0.538   5.182
 OK
'library' or 'require' call not declared from: ‘gridExtra’
Maintainer: ‘Pulong Ma <mpulong@gmail.com>’

The Description field contains
  Andrew T Cox (2019) <arXiv:1909.01836>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
checkRd: (-1) estimate_t0.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_t0.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_t0.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:75: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Marta Karas <marta.karass@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Susana Barbosa <sabarbosa@fc.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Susana",
                    family = "Barbosa",
                    role = c("aut", "cre"),
                    email = "sabarbosa@fc.ul.pt")
as necessary.
checkRd: (-1) recm.Rd:55: Lost braces; missing escapes or markup?
    55 | {In all cases,} \eqn{x_{j,t-1}} {in} \eqn{ECT} {is replaced by} \eqn{x_{j,t} \;\;\;\;\; \forall \;\; q_{j} = 0}
       | ^
checkRd: (-1) recm.Rd:55: Lost braces; missing escapes or markup?
    55 | {In all cases,} \eqn{x_{j,t-1}} {in} \eqn{ECT} {is replaced by} \eqn{x_{j,t} \;\;\;\;\; \forall \;\; q_{j} = 0}
       |                                 ^
checkRd: (-1) recm.Rd:55: Lost braces; missing escapes or markup?
    55 | {In all cases,} \eqn{x_{j,t-1}} {in} \eqn{ECT} {is replaced by} \eqn{x_{j,t} \;\;\;\;\; \forall \;\; q_{j} = 0}
       |                                                ^
checkRd: (-1) uecm.Rd:76: Lost braces; missing escapes or markup?
    76 |   {In addition,} \eqn{x_{j,t-1}} {and} \eqn{\Delta x_{j,t}} {cancel out
       |   ^
checkRd: (-1) uecm.Rd:76: Lost braces; missing escapes or markup?
    76 |   {In addition,} \eqn{x_{j,t-1}} {and} \eqn{\Delta x_{j,t}} {cancel out
       |                                  ^
checkRd: (-1) uecm.Rd:76-77: Lost braces
    76 |   {In addition,} \eqn{x_{j,t-1}} {and} \eqn{\Delta x_{j,t}} {cancel out
       |                                                             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘adb_archive.R’ ‘adb_backup.R’ ‘adb_querry.R’ ‘helpers.R’
    ‘normGeometry.R’
Maintainer: ‘Christopher Prener <chris.prener@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘JQ Veenstra <jqveenstra@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "JQ",
                      family = "Veenstra",
                      role = c("aut", "cre"),
                      email = "jqveenstra@gmail.com",
                      comment = "Justin"),
               person(given = "A.I.",
                      family = "McLeod",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  arfima.Rd: TrenchMean
  logLik.arfima.Rd: ltsa
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
tacfplot 0.695  0.007    7.36
 OK
Maintainer: ‘Shihao Yang <shihao.yang@isye.gatech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shaoyang",
                      family = "Ning",
                      role = "aut"),
               person(given = "Shihao",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "shihao.yang@isye.gatech.edu"),
               person(given = c("S.", "C."),
                      family = "Kou",
                      role = "aut"))
as necessary.
Maintainer: ‘David J. H. Shih <djh.shih@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J.", "H."),
                    family = "Shih",
                    role = c("aut", "cre"),
                    email = "djh.shih@gmail.com")
as necessary.
'library' or 'require' call not declared from: ‘magrittr’
Maintainer: ‘Haoran Li <hrli@ucdavis.edu>’

The Description field contains
  by Li et al., (2016) <arXiv:1609.08725>. Both one-sample and two-sample
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Livio Finos <livio.finos@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Livio",
                      family = "Finos",
                      role = c("aut", "cre"),
                      email = "livio.finos@unipd.it"),
               person(given = "Jelle",
                      family = "Goeman",
                      role = "aut"),
               person(given = "Wouter",
                      family = "Weeda",
                      role = "aut"),
               person(given = "Jonathan",
                      family = "Rosenblatt",
                      role = "aut"),
               person(given = "Aldo",
                      family = "Solari",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sample_ARMA_coef.R’
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SmoothMultiarrayModel.Rd: ChromosomalModel,
    CopyNumberSegmentationModel
  byPath.AffymetrixFileSet.Rd: GenericDataFile
  calculateBaseline.ChipEffectSet.Rd: getAverageFile
  doCRMAv1.Rd: Verbose
  doCRMAv2.Rd: Verbose
  doFIRMA.Rd: Verbose
  doGCRMA.Rd: Verbose
  doRMA.Rd: Verbose
  justRMA.Rd: Verbose
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  writeDataFrame.AromaUnitSignalBinaryFile.Rd: TabularTextFile
  writeDataFrame.AromaUnitSignalBinarySet.Rd: TabularTextFileSet
  writeDataFrame.AromaUnitTabularBinaryFile.Rd: TabularTextFile
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
                      email = "antonio.profico@gmail.com"),
               person(given = "Costantino",
                      family = "Buzi",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Castiglione",
                      role = "aut"),
               person(given = "Marina",
                      family = "Melchionna",
                      role = "aut"),
               person(given = "Paolo",
                      family = "Piras",
                      role = "aut"),
               person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.
Maintainer: ‘Rommy C. Olivari <rco1@de.ufpe.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rommy", "C."),
                      family = "Olivari",
                      role = c("aut", "cre"),
                      email = "rco1@de.ufpe.br"),
               person(given = "Kelin",
                      family = "Zhong",
                      role = "aut"),
               person(given = c("Aldo", "M."),
                      family = "Garay",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Maintainer: ‘James E. Pustejovsky <jepusto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("James", "E."),
                      family = "Pustejovsky",
                      role = c("aut", "cre"),
                      email = "jepusto@gmail.com"),
               person(given = c("with", "contributions", "from", "Daniel", "M."),
                      family = "Swan",
                      role = "aut"))
as necessary.
Maintainer: ‘C. Beleites <claudia.beleites@chemometrix.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "C.",
                    family = "Beleites",
                    role = c("aut", "cre"),
                    email = "claudia.beleites@chemometrix.eu")
as necessary.
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘main.R’ ‘transformer.Rd’
Maintainer: ‘A.I. McLeod <aimcleod@uwo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("A.", "I."),
                      family = "McLeod",
                      role = "aut"),
               person(given = c("Mark", "M."),
                      family = "Meerschaert",
                      role = "aut"),
               person(given = "Farzad",
                      family = "Sabzikar",
                      role = "aut"),
               person(given = "A.I.",
                      family = "McLeod",
                      role = "cre",
                      email = "aimcleod@uwo.ca"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  artfima-package.Rd: ltsa
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘art_pals.R’ ‘art_pals.Rd’ ‘circle_data.R’ ‘circle_data.Rd’
    ‘grid_maker.R’ ‘group_numbers.R’ ‘packer.R’ ‘packer.Rd’ ‘rotator.R’
    ‘square_data.R’ ‘square_data.Rd’ ‘wave_data.R’ ‘wave_data.Rd’
Maintainer: ‘Pablo J. Villacorta <pjvi@decsai.ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pablo", "J."),
                    family = "Villacorta",
                    role = c("aut", "cre"),
                    email = "pjvi@decsai.ugr.es")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@lyle.smu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/mhahsler/arulesCBA
which should likely be
  https://github.com/mhahsler/arulesCBA/issues
instead.
Maintainer: ‘Michael Hahsler <mhahsler@lyle.smu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/mhahsler/arulesNBMiner
which should likely be
  https://github.com/mhahsler/arulesNBMiner/issues
instead.
user system elapsed
calc_selection_weights 3.666  0.237   5.172
 OK
Maintainer: ‘Dirk F. Moore <dirkfmoore@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dirk", "F."),
                    family = "Moore",
                    role = c("aut", "cre"),
                    email = "dirkfmoore@gmail.com")
as necessary.
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
Maintainer: ‘Brian <bleemayer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "Lee"),
                      family = "Mayer",
                      role = "aut"),
               person(family = "Brian",
                      role = "cre",
                      email = "bleemayer@gmail.com"))
as necessary.
Maintainer: ‘Jeremy Leipzig <leipzig@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeremy",
                    family = "Leipzig",
                    role = c("aut", "cre"),
                    email = "leipzig@gmail.com")
as necessary.
Maintainer: ‘Nick Parsons <nick.parsons@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Parsons",
                    role = c("aut", "cre"),
                    email = "nick.parsons@warwick.ac.uk")
as necessary.
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "David", "W.", "Scott", "R", "port", "by", "Albrecht", "Gebhardt", "adopted", "to", "recent", "S-PLUS", "by", "Stephen", "Kaluzny"),
                      family = "<spk@insightful.com>",
                      role = "aut",
                      email = "spk@insightful.com"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  meldCD.Rd: binomMeld.test
  signTest.Rd: mcnemarExactDP, binom.exact
  wmwTest.Rd: wilcox_test
  wsrTest.Rd: wilcoxsign_test
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lars Kotthoff <larsko@uwyo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernd",
                      family = "Bischl",
                      role = "aut",
                      email = "bernd_bischl@gmx.net"),
               person(given = "Lars",
                      family = "Kotthoff",
                      role = c("aut", "cre"),
                      email = "larsko@uwyo.edu"),
               person(given = "Pascal",
                      family = "Kerschke",
                      role = c("ctb", "aut"),
                      email = "kerschke@uni-muenster.de"),
               person(given = "Damir",
                      family = "Pulatov",
                      role = c("ctb", "aut"),
                      email = "damirpolat@protonmail.com"))
as necessary.
checkRd: (-1) convertAlgoPerfToWideFormat.Rd:28: Lost braces
    28 | code{NA} means the performance value is not available, possibly because the algorithm run was aborted.
       |     ^
checkRd: (-1) parseASScenario.Rd:40: Lost braces
    40 |   code{NA} means the cost is not available, possibly because the feature computation was aborted.
       |       ^
checkRd: (-1) parseASScenario.Rd:47: Lost braces
    47 |   code{NA} means the cost is not available, possibly because the feature computation was aborted.
       |       ^
checkRd: (-1) parseASScenario.Rd:55: Lost braces
    55 |   code{NA} means the feature is not available, possibly because the feature computation was aborted.
       |       ^
checkRd: (-1) parseASScenario.Rd:62: Lost braces
    62 |   code{NA} means the feature is not available, possibly because the feature computation was aborted.
       |       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  createCVSplits.Rd: write.arff
  summarizeLlamaExps.Rd: Registry, reduceResultsList
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
ASpredict.as_train        5.213  0.394   6.980
figure_comparison.as_data 4.530  0.102   5.202
boxplots.as_data          4.342  0.051   5.706
 OK
Maintainer: ‘Damien R. Farine <dfarine@ab.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Damien", "R."),
                    family = "Farine",
                    role = c("aut", "cre"),
                    email = "dfarine@ab.mpg.de")
as necessary.
user system elapsed
network_swap 5.934  0.198   7.172
 OK
Maintainer: ‘Matt Wayland <mw283@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Wayland",
                    role = c("aut", "cre"),
                    email = "mw283@cam.ac.uk")
as necessary.
Maintainer: ‘Vivien Goepp <vivien.goepp@gmail.com>’

The Description field contains
  Selection", <arXiv:1808.01770>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Il-Youp Kwak <ikwak2@cau.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Il-Youp",
                      family = "Kwak",
                      role = c("aut", "cre"),
                      email = "ikwak2@cau.ac.kr"),
               person(given = c("others", "in", "each", "function"),
                      family = "manual)",
                      role = "aut",
                      comment = "s"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ped.pine.Rd’ ‘ped.salmon.Rd’ ‘pheno.apple.Rd’ ‘pheno.pine.Rd’
    ‘pheno.salmon.Rd’
Maintainer: ‘Miguel de Carvalho <miguel.decarvalho@ed.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
resid_quasi 5.79   0.04   7.737
 OK
Maintainer: ‘Maximilian Nagl <maximilian.nagl@ur.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Nagl",
                      role = c("aut", "cre"),
                      email = "maximilian.nagl@ur.de"),
               person(given = "Yevhen",
                      family = "Havrylenko",
                      role = "aut"),
               person(given = "Marius",
                      family = "Pfeuffer",
                      role = "aut"),
               person(given = "Kevin",
                      family = "Jakob",
                      role = "aut"),
               person(given = "Matthias",
                      family = "Fischer",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Roesch",
                      role = "aut"))
as necessary.
Maintainer: ‘Rolf Turner <r.turner@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "r.turner@auckland.ac.nz")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) plot.AssetPricing.Rd:199-200: Lost braces
   199 |   yakka. (Note that \code{flap} stands for dQuote{function list
       |                                                  ^
Maintainer: ‘Kuan-Yu (Alex) Chen <alexkychen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kuan-Yu",
                      family = "Chen",
                      role = c("aut", "cre"),
                      comment = "Alex"),
               person(given = c("Elizabeth", "A."),
                      family = "Marschall",
                      role = "aut"),
               person(given = c("Michael", "G."),
                      family = "Sovic",
                      role = "aut"),
               person(given = c("Anthony", "C."),
                      family = "Fries",
                      role = "aut"),
               person(given = c("H.", "Lisle"),
                      family = "Gibbs",
                      role = "aut"),
               person(given = c("Stuart", "A."),
                      family = "Ludsin",
                      role = "aut"),
               person(given = "Kuan-Yu",
                      family = "Chen",
                      role = "cre",
                      email = "alexkychen@gmail.com",
                      comment = "Alex"))
as necessary.
Maintainer: ‘Damien Farine <dfarine@orn.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "William",
                      family = "Hoppitt",
                      role = "aut"),
               person(given = "Damien",
                      family = "Farine",
                      role = c("aut", "cre"),
                      email = "dfarine@orn.mpg.de"))
as necessary.
Maintainer: ‘Lin Wang <wanglin2009@amss.ac.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lin",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wanglin2009@amss.ac.cn"),
               person(given = "Wei",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Qizhai",
                      family = "Li",
                      role = "aut"),
               person(given = "Weicheng",
                      family = "Zhu",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  nmax3.Rd: pmvnorm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Damien Farine <damien.farine@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damien",
                    family = "Farine",
                    role = c("aut", "cre"),
                    email = "damien.farine@anu.edu.au")
as necessary.
Maintainer: ‘Krämer Konrad <konrad_kraemer@yahoo.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Krämer",
                    family = "Konrad",
                    role = c("aut", "cre"),
                    email = "konrad_kraemer@yahoo.de")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/Konrad1991/ast2ast
which should likely be
  https://github.com/Konrad1991/ast2ast/issues
instead.
Specified C++11: please drop specification unless essential
checkRd: (-1) readOEM.Rd:34: Lost braces
    34 |   always, the identifier has the format YYYY-NNNP{PP}, where YYYY is the year
       |                                                  ^
checkRd: (-1) readOEM.Rd:36: Lost braces
    36 |   during year YYYY and P{PP} is a part specifier comprising 1 to 3 capital letters
       |                         ^
checkRd: (-1) readOEM.Rd:74-75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readOEM.Rd:76-79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readOEM.Rd:80-86: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  hpop.Rd: ode
  readGLONASSNavigationRINEX.Rd: nanotime
  readGPSNavigationRINEX.Rd: nanotime
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Charles", "J."),
                    family = "Geyer",
                    role = c("aut", "cre"),
                    email = "geyer@umn.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pickle.Rd: trust
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ali Ghanbari  <a.ghanbari541@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Parinaz",
                      family = "Mehdipour",
                      role = "aut",
                      email = "mehdipoor.p@gmail.com"),
               person(given = "Ali",
                      family = "Ghanbari",
                      role = c("cre", "aut"),
                      email = "a.ghanbari541@gmail.com"),
               person(given = "Farshad",
                      family = "Farzadfar",
                      role = "cph",
                      email = "farzadfar3@yahoo.com"))
as necessary.
user system elapsed
integratePower 3.524  0.071    6.24
 OK
Maintainer: ‘Andrew Harris <harris@astro.umd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Harris",
                    role = c("aut", "cre"),
                    email = "harris@astro.umd.edu")
as necessary.
Maintainer: ‘Richard M. Single <rsingle@uvm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Richard", "M."),
                    family = "Single",
                    role = c("aut", "cre"),
                    email = "rsingle@uvm.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Berrie Zielman <berrie.zielman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Berrie",
                    family = "Zielman",
                    role = c("aut", "cre"),
                    email = "berrie.zielman@gmail.com")
as necessary.
Maintainer: ‘Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cqls",
                      family = "Team",
                      role = "aut"),
               person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = "cre",
                      email = "lafaye@unsw.edu.au"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hongyuan",
                      family = "Cao",
                      role = "aut"),
               person(given = "Donglin",
                      family = "Zeng",
                      role = "aut"),
               person(given = "Jialiang",
                      family = "Li",
                      role = "aut"),
               person(given = c("Jason", "P."),
                      family = "Fine",
                      role = "aut"),
               person(given = c("Shannon", "T."),
                      family = "Holloway",
                      role = c("aut", "cre"),
                      email = "shannon.t.holloway@gmail.com"))
as necessary.
user system elapsed
atable 3.74  0.236   5.075
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ATA.BoxCoxAttr.Rd: BoxCox, InvBoxCox, BoxCox.lambda
  ATA.Decomposition.Rd: stlplus
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) ataCoKriging.Rd:52: Lost braces; missing escapes or markup?
    52 | only one contrained condition for all points and all variables, \\sum_{i=1}^n\\lambda_i +\\sum_{j=1}^m\\beta_j =1, assuming expected means of variables known and constant with the study area.
       |                                                                       ^
checkRd: (-1) ataCoKriging.Rd:52: Lost braces; missing escapes or markup?
    52 | only one contrained condition for all points and all variables, \\sum_{i=1}^n\\lambda_i +\\sum_{j=1}^m\\beta_j =1, assuming expected means of variables known and constant with the study area.
       |                                                                                                ^
'library' or 'require' call not declared from: ‘sp’
Maintainer: ‘Sokbae Lee <sl3841@columbia.edu>’

The Description field contains
  Pooling Limited Information across Observations," <arXiv:2111.05243>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) simulation_dgp.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{x_discrete}{TRUE if the distribution of the covariate is uniform on {-3.0, -2.9, ..., 3.0} and
       |                                                                           ^
checkRd: (-1) simulation_dgp.Rd:23: Lost braces
    23 | \item{att_oracle}{the sample analog of E[D{Y(1) - Y(0)}|D=1]}
       |                                           ^
user system elapsed
references_best 3.416  0.105   5.016
 OK
Maintainer: ‘Vladimir Polony <podalv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vladimir",
                    family = "Polony",
                    role = c("aut", "cre"),
                    email = "podalv@gmail.com")
as necessary.
user system elapsed
ChileClimateData 0.437  0.102   8.208
 OK
Maintainer: ‘Simon Mak <smak6@gatech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Mak",
                    role = c("aut", "cre"),
                    email = "smak6@gatech.edu")
as necessary.

The Description field contains
  <arXiv:1712.03589>. This work was supported by USARO grant
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘atmopt-package.Rd’:
    \keyword{ Robust optimization, discrete optimizati [TRUNCATED]
Maintainer: ‘Emmanuel Blondel <emmanuel.blondel1@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/eblondel/atom4R
which should likely be
  https://github.com/eblondel/atom4R/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘atpol_grids.R’ ‘miscRscript.r’ ‘plot_points_on_atpol.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘catchment_sim.R’ ‘elementary_pop.R’
user system elapsed
plot.alarm_plot_data 5.293  0.056   6.154
 OK
user system elapsed
f_plot_distrib_3D 4.749  0.499   6.831
 OK
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘convert.r’
Maintainer: ‘Debin Qiu <debinqiu@uga.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Debin",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "debinqiu@uga.edu")
as necessary.
Maintainer: ‘Jonas Moss <jonas.gjertsen@gmail.com>’

The Description field contains
  Implements the methods described in Moss (2019, <arxiv:1911.01576>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michel Ballings <Michel.Ballings@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Maintainer: ‘Josh Gardner <jpgard@umich.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bernhard Lehnert <bernhard.lehnert@med.uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bernhard",
                    family = "Lehnert",
                    role = c("aut", "cre"),
                    email = "bernhard.lehnert@med.uni-greifswald.de")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gg_freiburg.Rd’
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "simon.urbanek@r-project.org")
as necessary.
checkRd: (-1) audioSample.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) audioSample.Rd:21: Lost braces in \itemize; meant \describe ?
File ‘audio/libs/audio.so’:
  Found non-API calls to R: ‘EXTPTR_PTR’, ‘R_checkActivity’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Glen Meeden <glen@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Glen",
                      family = "Meeden.",
                      role = "aut",
                      email = "glen@stat.umn.edu"),
               person(given = "Glen",
                      family = "Meeden",
                      role = "cre",
                      email = "glen@stat.umn.edu"))
as necessary.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bind_lr.Rd’ ‘lex_density.Rd’
Author field differs from that derived from Authors@R
  Author:    ‘J. Aravind [aut, cre] (<https://orcid.org/0000-0002-4791-442X>), S. Mukesh Sankar [aut] (<https://orcid.org/0000-0001-5459-392X>), Dhammaprakash Pandhari Wankhede [aut] (<https://orcid.org/0000-0001-6384-8664>), Vikender Kaur [aut] (<https://orcid.org/0000-0001-9698-7329>), ICAR-NBGPR [cph] (www.nbpgr.ernet.in)’
  Authors@R: ‘J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>), S. Mukesh Sankar [aut] (ORCID: <https://orcid.org/0000-0001-5459-392X>), Dhammaprakash Pandhari Wankhede [aut] (ORCID: <https://orcid.org/0000-0001-6384-8664>), Vikender Kaur [aut] (ORCID: <https://orcid.org/0000-0001-9698-7329>), ICAR-NBGPR [cph] (url: www.nbpgr.ernet.in)’
Maintainer: ‘Qihuang Zhang <qihuang.zhang@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qihuang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "qihuang.zhang@uwaterloo.ca"),
               person(given = c("Grace", "Y."),
                      family = "Yi",
                      role = "aut",
                      email = "yyi@uwaterloo.ca"))
as necessary.
user system elapsed
auk_zerofill 1.444  0.301   6.086
 OK
Maintainer: ‘Aritra Banerjee <aritra306@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aritra",
                    family = "Banerjee",
                    role = c("aut", "cre"),
                    email = "aritra306@gmail.com")
as necessary.
Maintainer: ‘Dai Feng <daifeng.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dai",
                      family = "Feng",
                      role = c("aut", "cre"),
                      email = "daifeng.stat@gmail.com"),
               person(given = "Damjan",
                      family = "Manevski",
                      role = "auc"),
               person(given = c("Maja", "Pohar"),
                      family = "Perme",
                      role = "auc"))
as necessary.
Maintainer: ‘Arjun Sondhi <asondhi@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arjun",
                      family = "Sondhi",
                      role = c("aut", "cre"),
                      email = "asondhi@uw.edu"),
               person(given = "Ken",
                      family = "Rice",
                      role = "aut"))
as necessary.
Maintainer: ‘Vitor Cerqueira <cerqueira.vitormanuel@gmail.com>’

The Description field contains
  arXiv:1706.09367.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dennis Robert <dennis.robert.nm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dennis",
                    family = "Robert",
                    role = c("aut", "cre"),
                    email = "dennis.robert.nm@gmail.com")
as necessary.
checkRd: (-1) get_candidate_covariates.Rd:50: Lost braces
    50 | \item \code{covars_data}   {The \code{data.frame} that is filtered out of \code{df} with only the selected \code{covars}}. The values of the
       |                            ^
checkRd: (-1) get_candidate_covariates.Rd:53: Lost braces
    53 | \item \code{patientIds}   {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}
       |                           ^
checkRd: (-1) get_prioritised_covariates.Rd:40: Lost braces
    40 | \item \code{multiplicative_bias}{The absolute log of the multiplicative bias term for each of the auto-selected prioritised covariates}
       |                                 ^
checkRd: (-1) get_recurrence_covariates.Rd:34: Lost braces
    34 | \item \code{patientIds}   {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}
       |                           ^
Maintainer: ‘ShengLi Tzeng <slt.cmu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "ShengLi",
                      family = "Tzeng",
                      role = c("aut", "cre"),
                      email = "slt.cmu@gmail.com"),
               person(given = "Hsin-Cheng",
                      family = "Huang",
                      role = "aut"),
               person(given = "Wen-Ting",
                      family = "Wang",
                      role = "ctb"),
               person(given = "Douglas",
                      family = "Nychka",
                      role = "ctb"),
               person(given = "Colin",
                      family = "Gillespie",
                      role = "ctb"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
MFA_ECM 4.175  0.317   5.794
 OK
Maintainer: ‘Navinkumar Nedunchezhian <navinkumar.nedunchezhian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Navinkumar",
                    family = "Nedunchezhian",
                    role = c("aut", "cre"),
                    email = "navinkumar.nedunchezhian@gmail.com")
as necessary.
Maintainer: ‘Yuan Tang <terrytangyuan@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yao Geng <gengyao0103521@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yao",
                      family = "Geng",
                      role = "cre",
                      email = "gengyao0103521@qq.com"))
as necessary.
checkRd: (-1) Autoplotprotein-package.Rd:27: Lost braces
    27 | code{\link{help}}
       |     ^
checkRd: (-1) Autoplotprotein.Rd:25: Lost braces
    25 | code{\link{help}}
       |     ^
checkRd: (-1) data.Rd:22: Lost braces
    22 | code{\link{help}}
       |     ^
checkRd: (-1) domain_data.Rd:29: Lost braces
    29 | code{\link{help}}
       |     ^
checkRd: (-1) length_data.Rd:32: Lost braces
    32 | code{\link{help}}
       |     ^
checkRd: (-1) plotdomain.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotmutagensis.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotsite.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) site_data.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
Specified C++11: please drop specification unless essential
checkRd: (-1) noauto_scorecard.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{fit}{See glm {stats}.}
       |                    ^
checkRd: (-1) noauto_scorecard2.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{fit}{See glm {stats}.}
       |                    ^
user system elapsed
bins_chim 5.84   0.06   6.921
 OK
Maintainer: ‘Feng Xie <xief@u.duke.nus.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
AutoScore_rank 4.034  0.657   5.846
 OK
user system elapsed
generate_slides 4.988   0.13   6.447
 OK
user system elapsed
auto_variable_contributions 3.669  0.687   5.113
 OK
Maintainer: ‘Aaron England <aaron.england24@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "England",
                    role = c("aut", "cre"),
                    email = "aaron.england24@gmail.com")
as necessary.
user system elapsed
AutoTransQF 6.138  0.099   7.402
 OK
Maintainer: ‘Vivien Roussez <vivien.roussez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vivien",
                    family = "Roussez",
                    role = c("aut", "cre"),
                    email = "vivien.roussez@gmail.com")
as necessary.
user system elapsed
getBestModel 5.871  0.749   7.612
 OK
checkRd: (-1) avar_mo_cpp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_mo_cpp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_mo_cpp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Christina Harvey <harveyca@umich.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gergely Daroczi <daroczig@rapporter.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gergely",
                    family = "Daroczi",
                    role = c("aut", "cre"),
                    email = "daroczig@rapporter.net")
as necessary.
Maintainer: ‘Gergely Daroczi <daroczig@rapporter.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gergely",
                    family = "Daroczi",
                    role = c("aut", "cre"),
                    email = "daroczig@rapporter.net")
as necessary.
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antoine Sachet <antoine.sac@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jonathan Stott <jonathan.stott@magairports.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \$
Maintainer: ‘Simon Urbanek <simon.urbanek@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Simon Urbanek <simon.urbanek@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antoine Sachet <antoine.sac@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Simon Urbanek <simon.urbanek@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jonathan Stott <jonathan.stott@magairports.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antoine Sachet <antoine.sac@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antoine Sachet <antoine.sac@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) cosmos_mongo.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{host}{For \code{cosmos_mongo_endpoint}, the URL of the Cosmos DB MongoDB endpoint. Usually of the form "https://{account-name}.mongo.cosmos.azure.com:443/".}
       |                                                                                                                       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  call_batch_endpoint.Rd: AzureToken
  call_graph.Rd: AzureToken
  graph_login.Rd: get_azure_token
  ms_graph.Rd: get_azure_token
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AzureKusto.Rd: dbReadTable, dbWriteTable, dbGetQuery, dbSendStatement
  DBI_query.Rd: dbConnect, dbReadTable, dbWriteTable
  DBI_table.Rd: dbConnect
  az_kusto.Rd: az_resource_group
  copy_to.kusto_database_endpoint.Rd: collect
  kusto-DBI.Rd: dbConnect, dbDisconnect, dbCanConnect, dbExistsTable,
    dbCreateTable, dbRemoveTable, dbReadTable, dbWriteTable,
    dbGetQuery, dbSendQuery, dbFetch, dbSendStatement, dbExecute,
    dbListFields, dbColumnInfo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  az_resource_group.Rd: AzureToken
  az_rm.Rd: AzureToken
  az_subscription.Rd: AzureToken
  azure_login.Rd: AzureToken
  call_azure.Rd: AzureToken
  utils.Rd: AzureToken
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  az_storage.Rd: az_resource_group
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Adam B. Olshen <adam.olshen@ucsf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Adam", "B."),
                      family = "Olshen",
                      role = c("aut", "cre"),
                      email = "adam.olshen@ucsf.edu"),
               person(given = c("Richard", "A."),
                      family = "Olshen",
                      role = "aut"),
               person(given = c("Barry", "S."),
                      family = "Taylor",
                      role = "aut"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter), Joel Nitta [aut] (<https://orcid.org/0000-0003-4719-7472>, joelnitta)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter), Joel Nitta [aut] (ORCID: <https://orcid.org/0000-0003-4719-7472>, github: joelnitta)’
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robin", "K.", "S."),
                    family = "Hankin",
                    role = c("aut", "cre"),
                    email = "hankin.robin@gmail.com")
as necessary.
Maintainer: ‘J. Jack Lee <jjlee@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nan",
                      family = "Chen",
                      role = "aut"),
               person(given = c("J.", "Jack"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "jjlee@mdanderson.org"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  backbone.suggest.Rd: Matrix, igraph
  disparity.Rd: Matrix, igraph
  fdsm.Rd: Matrix, igraph
  fixedcol.Rd: Matrix, igraph
  fixedfill.Rd: Matrix, igraph
  fixedrow.Rd: Matrix, igraph
  global.Rd: Matrix, igraph
  lans.Rd: Matrix, igraph
  mlf.Rd: Matrix, igraph
  osdsm.Rd: Matrix, igraph
  sdsm.Rd: Matrix, igraph
  sparsify.Rd: Matrix, igraph
  sparsify.with.geometric.Rd: Matrix, igraph
  sparsify.with.gspar.Rd: Matrix, igraph
  sparsify.with.hypergeometric.Rd: Matrix, igraph
  sparsify.with.jaccard.Rd: Matrix, igraph
  sparsify.with.localdegree.Rd: Matrix, igraph
  sparsify.with.lspar.Rd: Matrix, igraph
  sparsify.with.meetmin.Rd: Matrix, igraph
  sparsify.with.quadrilateral.Rd: Matrix, igraph
  sparsify.with.simmelian.Rd: Matrix, igraph
  sparsify.with.skeleton.Rd: Matrix, igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christina",
                    family = "Heinze-Deml",
                    role = c("aut", "cre"),
                    email = "heinzedeml@stat.math.ethz.ch")
as necessary.

The Description field contains
  more details, see <arXiv:1506.02494>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel Gerlanc <dgerlanc@enplusadvisors.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Enos",
                      role = "aut",
                      email = "jeff@kanecap.com"),
               person(given = "David",
                      family = "Kane",
                      role = "aut",
                      email = "dave@kanecap.com"),
               person(given = c("with", "contributions", "from", "Kyle"),
                      family = "Campbell",
                      role = "aut",
                      email = "kyle.w.campbell@williams.edu"),
               person(given = "Daniel",
                      family = "Gerlanc",
                      role = c("aut", "cre"),
                      email = "daniel@gerlanc.com"),
               person(given = "Aaron",
                      family = "Schwartz",
                      role = "aut",
                      email = "Aaron.J.Schwartz@williams.edu"),
               person(given = "Daniel",
                      family = "Suo",
                      role = "aut",
                      email = "danielsuo@gmail.com"),
               person(given = "Alexei",
                      family = "Colin",
                      role = "aut",
                      email = "acolin@fas.harvard.edu"),
               person(given = c("and", "Luyi"),
                      family = "Zhao",
                      role = "aut",
                      email = "luyizhao@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aloocv.R’ ‘cohortODX.R’ ‘computeEndpoints.R’ ‘fit_baclava.R’
    ‘predictODX.R’ ‘s3_methods.R’ ‘utilities.R’
Maintainer: ‘Denis Talbot <denis.talbot@fmed.ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Talbot",
                      role = c("aut", "cre"),
                      email = "denis.talbot@fmed.ulaval.ca"),
               person(given = "Genevieve",
                      family = "Lefebvre",
                      role = "aut"),
               person(given = "Juli",
                      family = "Atherton",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BACprior.lm.Rd: regsubsets
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Chi Wang <chi.wang@uky.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chi",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "chi.wang@uky.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Gregor de Cillia [ctb], Dirk Eddelbuettel [ctb], Maëlle Salmon [ctb], Robrecht Cannoodt [ctb] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Alexander Rossell Hayes [ctb] (<https://orcid.org/0000-0001-9412-0457>, rossellhayes), Waldir Leoncio [ctb], Matthew Schuelke [ctb] (<https://orcid.org/0000-0001-5755-1725>, the-mad-statter)’
  Authors@R: ‘Guangchuang Yu [aut, cre] (ORCID: <https://orcid.org/0000-0002-6485-8781>), Gregor de Cillia [ctb], Dirk Eddelbuettel [ctb], Maëlle Salmon [ctb], Robrecht Cannoodt [ctb] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Alexander Rossell Hayes [ctb] (ORCID: <https://orcid.org/0000-0001-9412-0457>, github: rossellhayes), Waldir Leoncio [ctb], Matthew Schuelke [ctb] (ORCID: <https://orcid.org/0000-0001-5755-1725>, github: the-mad-statter)’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘round_rect.r’ ‘waffle.r’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘baf.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  baf.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
augment.bage_mod 5.103  0.152    6.49
 OK
Maintainer: ‘Rafael Santos <rafael.jpsantos@outlook.com>’

The Description field contains
  <arXiv:2001.00636>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
bagged.outliertrees         0.354  0.065   6.705
print.bagged.outlieroutputs 0.381  0.007   6.575
predict.bagged.outliertrees 0.240  0.006   6.034
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forest_plot.Rd: forestplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jiawei Zhang <zhan4362@umn.edu>’

The Description field contains
  can be found in Zhang, Ding and Yang (2021) <arXiv:1911.03063v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_cyclone.R’
Maintainer: ‘Damien Challet <damien.challet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Bongiorno",
                      role = "aut"),
               person(given = "Damien",
                      family = "Challet",
                      role = c("aut", "cre"),
                      email = "damien.challet@gmail.com"))
as necessary.

The Description field contains
  hierarchies (2020) <arXiv:2003.05807> and Ch. Bongiorno and D. Challet,
  cleaning (2020) <arXiv:2005.08703>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Caspar J van Lissa <c.j.vanlissa@tilburguniversity.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/cjvanlissa/bain/
which should likely be
  https://github.com/cjvanlissa/bain/issues
instead.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = "Dylan",
                      family = "Small",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fit_lgmr.Rd: stan_model
  infer_data_and_decision_model.Rd: sampling, tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Kyungtaek Park <qkrrudxor147@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyungtaek",
                    family = "Park",
                    role = c("aut", "cre"),
                    email = "qkrrudxor147@snu.ac.kr")
as necessary.
Maintainer: ‘Pawel Dlotko <pdlotko@gmail.com>’

The Description field contains
  topological data analysis" by Pawel Dlotko, (2019) <arXiv:1901.07410>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mike Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  <doi:10.1111/biom.13189> and Song et al (2020) <arXiv:2009.11409>,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Volker Schmid <volker.schmid@lmu.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jeff Gill <jgill5402@mac.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Homola",
                      role = "aut"),
               person(given = "Danielle",
                      family = "Korman",
                      role = "aut"),
               person(given = "Jacob",
                      family = "Metz",
                      role = "aut"),
               person(given = "Miguel",
                      family = "Pereira",
                      role = "aut"),
               person(given = "Mauricio",
                      family = "Vela",
                      role = "aut"),
               person(given = "Jeff",
                      family = "Gill",
                      role = c("aut", "cre"),
                      email = "jgill5402@mac.com"))
as necessary.
Maintainer: ‘Balasubramanian Narasimhan <naras@stanford.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/motiwari/BanditPAM
which should likely be
  https://github.com/motiwari/BanditPAM/issues
instead.
Author field differs from that derived from Authors@R
  Author:    ‘Balasubramanian Narasimhan [aut, cre], Mo Tiwari [aut] (https://motiwari.com)’
  Authors@R: ‘Balasubramanian Narasimhan [aut, cre], Mo Tiwari [aut] (website: https://motiwari.com)’
possible bashism in configure.ac line 53 (unsafe echo with backslash):
      echo '         To use all CPU cores, you should install OpenMP by running\n                    '
Maintainer: ‘Markus Loecher <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Lotze",
                      role = "aut"),
               person(given = "Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"))
as necessary.
Maintainer: ‘Arya Ebadi <aeba3842@uni.sydney.edu.au>’

The Description field contains
  <arXiv:2302.11837>. Such setups include target-decoy competition (TDC)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "Bill.Venables@gmail.com")
as necessary.
Maintainer: ‘Chen Dong <chendong.math.umd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chen",
                      family = "Dong",
                      role = c("aut", "cre"),
                      email = "chendong.math.umd@gmail.com"),
               person(given = "Michel",
                      family = "Wedel",
                      role = "aut"),
               person(given = "Anna",
                      family = "Kopyakova",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BANOVA.run.Rd: rstan
  pairs.BANOVA.Rd: rstan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  getBanterModel.Rd: randomForest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Eduardo Flores <eduardo@enelmargen.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eduardo",
                    family = "Flores",
                    role = c("aut", "cre"),
                    email = "eduardo@enelmargen.org")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘dexpfit.R’ ‘expfit.R’ ‘icarfit.R’ ‘logisticfit.R’
Maintainer: ‘Roman Hornung <hornung@ibe.med.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Roman",
                      family = "Hornung",
                      role = c("aut", "cre"),
                      email = "hornung@ibe.med.uni-muenchen.de"),
               person(given = "David",
                      family = "Causeur",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘János Hevner <hevnerjanos@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "János",
                    family = "Hevner",
                    role = c("aut", "cre"),
                    email = "hevnerjanos@hotmail.com")
as necessary.
checkRd: (-1) barcoding.spe.identify2.Rd:27: Lost braces; missing escapes or markup?
    27 | read.dna() from package {ape} was used to obtain DNAbin object for unaligned non-coding barcodes.
       |                         ^
Maintainer: ‘Kamil Erguler <k.erguler@cyi.ac.cy>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kamil",
                    family = "Erguler",
                    role = c("aut", "cre"),
                    email = "k.erguler@cyi.ac.cy")
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Justin",
                      family = "Bleich",
                      role = "aut",
                      comment = c(ROR = "R package")),
               person(given = c("see", "COPYRIGHTS", "file", "for", "the", "authors", "of", "the", "java"),
                      family = "libraries",
                      role = "aut"))
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Justin",
                      family = "Bleich",
                      role = "aut",
                      comment = c(ROR = "R package")))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acceptenceRate.R’ ‘extractTreeData.R’ ‘generic_functions.R’
    ‘permVint.R’ ‘plot_all_trees.R’ ‘splitDensity.R’ ‘treeBarPlot.R’
    ‘treeDataframe.R’ ‘treeList.R’ ‘vintPlot.R’
user system elapsed
plotTrees 5.709  0.154   7.611
 OK
user system elapsed
predict.criskbart  3.057  0.993   5.164
mc.crisk.pwbart    2.823  0.551   6.804
predict.crisk2bart 1.726  0.655   5.610
 OK
'library' or 'require' calls not declared from:
  ‘rpart’ ‘rpart.plot’
Maintainer: ‘Qingyan Xiang <qyxiang@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingyan",
                      family = "Xiang",
                      role = c("aut", "cre"),
                      email = "qyxiang@bu.edu"),
               person(given = "Naveen",
                      family = "Narisetty",
                      role = "aut",
                      email = "naveen@illinois.edu"))
as necessary.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
File ‘base64enc/libs/base64enc.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘chadwick_installation.R’
checkRd: (-1) bd_collect.Rd:30: Lost braces; missing escapes or markup?
    30 | the {dplyr}'s verbs and thus use it in local memory completely.
       |     ^
checkRd: (-1) bd_write.Rd:52: Lost braces; missing escapes or markup?
    52 | Writes a remote table to disk that was called via {bdplyr}.
       |                                                   ^
checkRd: (-1) bdplyr.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Compatibility with {dplyr} verbs without using SQL language}
       |                           ^
user system elapsed
tidySet 3.928  0.191   5.024
 OK
Maintainer: ‘Marco Vidal-Cordasco <marcovidalcordasco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "B."),
                      family = "Marín-Arroyo",
                      role = "aut"),
               person(given = "David",
                      family = "Ocio",
                      role = "aut"),
               person(given = "Marco",
                      family = "Vidal-Cordasco",
                      role = "cre",
                      email = "marcovidalcordasco@gmail.com"),
               person(given = "Delphine",
                      family = "Vettese"))
as necessary.
user system elapsed
scatterplot      5.096  0.013   6.216
plot.kclustering 4.721  0.011   5.460
shotchart        4.341  0.012   5.737
plot.hclustering 4.285  0.005   5.890
kclustering      4.245  0.000   5.511
 OK
Maintainer: ‘Michael J. Kane <michael.kane@yale.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Lukas Baumann [aut, cre] (<https://orcid.org/0000-0001-7931-7470>), Lukas Sauer [ctb] (0000-0002-1340-9994)’
  Authors@R: ‘Lukas Baumann [aut, cre] (ORCID: <https://orcid.org/0000-0001-7931-7470>), Lukas Sauer [ctb] (ORIC: 0000-0002-1340-9994)’
user system elapsed
adjust_lambda 4.28  0.025   5.553
 OK
File ‘BAS/libs/BAS.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Maintainer: ‘Michel Lang <michellang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernd",
                      family = "Bischl",
                      role = "aut",
                      email = "bernd_bischl@gmx.net"),
               person(given = "Michel",
                      family = "Lang",
                      role = c("aut", "cre"),
                      email = "michellang@gmail.com"),
               person(given = "Olaf",
                      family = "Mersmann",
                      role = "aut",
                      email = "olafm@p-value.net"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) ExperimentJob.Rd:14: Lost braces
    14 |   \item{\code{algo.id} [\code{character(1)}]:}{algo.id}{Algorithm ID.}
       |                                                        ^
checkRd: (-1) getAlgorithmIds.Rd:13: Lost braces
    13 | \item{ids}{[code{integer}]\cr
       |                 ^
checkRd: (-1) getProblemIds.Rd:13: Lost braces
    13 | \item{ids}{[code{integer}]\cr
       |                 ^
checkRd: (-1) makeExperimentRegistry.Rd:28: Lost braces
    28 | Default is dQuote{<name of registry>_files} in current working directory.}
       |                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  getExperimentParts.Rd: Job
  reduceResultsExperimentsParallel.Rd: batchMapQuick
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
getResultVars  8.557  0.050  11.280
addExperiments 8.132  0.154  10.160
getIndex       5.703  0.085   7.672
 OK
Maintainer: ‘Bernd Bischl <bernd_bischl@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernd",
                      family = "Bischl",
                      role = c("aut", "cre"),
                      email = "bernd_bischl@gmx.net"),
               person(given = "Michel",
                      family = "Lang",
                      role = "aut",
                      email = "michellang@gmail.com"),
               person(given = "Henrik",
                      family = "Bengtsson",
                      role = "aut",
                      email = "henrikb@braju.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
batchReduceResults 7.572  0.057   9.247
batchMapResults    6.351  0.092   7.838
batchReduce        6.334  0.085   7.888
submitJobs         5.520  0.048   7.592
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘batchLLM.R’ ‘batchLLM_shiny.R’
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Murali",
                      family = "Haran",
                      role = "aut",
                      email = "mharan@stat.psu.edu"),
               person(given = "John",
                      family = "Hughes",
                      role = c("aut", "cre"),
                      email = "drjphughesjr@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffmann",
                    role = c("aut", "cre"),
                    email = "tjhoffm@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sherry Zhao<sxzhao@gwu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sherry",
                    family = "Zhao",
                    role = c("aut", "cre"),
                    email = "sxzhao@gwu.edu")
as necessary.
checkRd: (-1) JobCollection.Rd:41: Lost braces
    41 |  \item{namespaces}{code{character} with required packages to load via \code{\link[base]{requireNamespace}}.}
       |                        ^
checkRd: (-1) addAlgorithm.Rd:31: Lost braces
    31 | Algorithms are functions which get the code{data} part as well as the problem instance (the return value of the
       |                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  JoinTables.Rd: data.table
  Worker.Rd: R6Class
  addExperiments.Rd: data.table
  batchMap.Rd: data.table
  batchMapResults.Rd: data.table
  batchReduce.Rd: data.table
  estimateRuntimes.Rd: data.table
  findJobs.Rd: data.table
  getErrorMessages.Rd: data.table
  getJobTable.Rd: data.table
  grepLogs.Rd: data.table
  killJobs.Rd: data.table
  removeExperiments.Rd: data.table
  resetJobs.Rd: data.table
  runHook.Rd: data.table
  submitJobs.Rd: data.table
  summarizeExperiments.Rd: data.table
  unwrap.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Deepankar Basu <dbasu@umass.edu>’

The Description field contains
  to the method of Basu (2022) <arXiv:2203.12431>.  You supply the data,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oliver",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = c("Ruben", "C."),
                      family = "Arslan",
                      role = "ctb"),
               person(given = "Christopher",
                      family = "Akiki",
                      role = "ctb"),
               person(given = "Mine",
                      family = "Cetinkaya-Rundel",
                      role = "ctb"),
               person(given = "Peter",
                      family = "Meissner",
                      role = "ctb"),
               person(given = "Ilaria",
                      family = "Prosdocimi",
                      role = "ctb"),
               person(given = "Thomas",
                      family = "Leeper",
                      role = "ctb"),
               person(given = "Amy",
                      family = "Lee",
                      role = "ctb"),
               person(given = "Adolfo",
                      family = "Álvarez",
                      role = "ctb"))
as necessary.
Maintainer: ‘Chunqiao Luo <chunqiaoluo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Evan A Martin <evanamartin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Evan", "A"),
                      family = "Martin",
                      role = c("aut", "cre"),
                      email = "evanamartin@gmail.com"),
               person(given = c("Audrey", "Qiuyan"),
                      family = "Fu",
                      role = "aut"))
as necessary.

The Description field contains
  References: Martin and Fu (2019) <arXiv:1909.10678>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) plotDistributions.Rd:32: Lost braces
    32 | plot{...} functions are generated programmatically so the function calls in
       |     ^
user system elapsed
bayes_ammi 5.152  0.221   6.765
 OK
Maintainer: ‘Riko Kelter <riko_k@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Riko",
                    family = "Kelter",
                    role = c("aut", "cre"),
                    email = "riko_k@gmx.de")
as necessary.

The Description field contains
  mixtures, see Kelter (2019) <arXiv:1906.07524>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jane Pan <jpan1@ucla.edu>’

The Description field contains
  (2021) <arXiv:2112.03509>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pwr_curve.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
bayes_sim  3.7   0.11   5.249
 OK
Maintainer: ‘Achal Lama <achal.lama@icar.gov.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Achal",
                      family = "Lama",
                      role = c("aut", "cre"),
                      email = "achal.lama@icar.gov.in"),
               person(given = c("Girish", "K"),
                      family = "Jha",
                      role = "aut"),
               person(given = c("K", "N"),
                      family = "Singh",
                      role = "aut"),
               person(given = "Bishal",
                      family = "Gurung",
                      role = "aut"))
as necessary.
Maintainer: ‘Panagiotis Papastamoulis <papapast@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panagiotis",
                    family = "Papastamoulis",
                    role = c("aut", "cre"),
                    email = "papapast@yahoo.gr")
as necessary.
checkRd: (-1) coupledMetropolis.Rd:83-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:86-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:89-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:92-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:95-97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:98-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:101-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:104-106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:107-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:110-112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:113-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:116-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:119-121: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:122-124: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:125-127: Lost braces in \itemize; meant \describe ?
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Li-Syuan Hong <lisyuan@nhri.org.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Li-Syuan",
                    family = "Hong",
                    role = c("aut", "cre"),
                    email = "lisyuan@nhri.org.tw")
as necessary.
Maintainer: ‘Stanley E. Lazic <stan.lazic@cantab.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bruno",
                      family = "Contrino",
                      role = "aut"),
               person(given = c("Stanley", "E."),
                      family = "Lazic",
                      role = c("aut", "cre"),
                      email = "stan.lazic@cantab.net"))
as necessary.
Maintainer: ‘Nick Golding <nick.golding.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nick",
                      family = "Golding",
                      role = c("aut", "cre"),
                      email = "nick.golding.research@gmail.com"),
               person(given = c("David", "J."),
                      family = "Harris",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BayesComm-package.Rd’:
    http://dx.doi.org/10.6084/m9.figshare.767289
checkRd: (-1) BayesComm-package.Rd:33: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.bayescomm.Rd: plot.mcmc
  summary.bayescomm.Rd: summary.mcmc
  window.bayescomm.Rd: window.mcmc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Maintainer: ‘Aldo M. Garay <medina_garay@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aldo", "M."),
                      family = "Garay",
                      role = c("aut", "cre"),
                      email = "medina_garay@yahoo.com"),
               person(given = c("Monique", "B."),
                      family = "Massuia",
                      role = "aut",
                      email = "moniquemassuia@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"),
               person(given = c("Eraldo", "B.", "Anjos"),
                      family = "Filho",
                      role = "aut",
                      email = "ebdaf1@de.ufpe.br"))
as necessary.
user system elapsed
B_GC.IDX    6.445  0.031   7.654
B_WP.IDX    6.047  0.004   7.556
plot_BCVI   5.890  0.019   7.480
B_CCV.IDX   5.382  0.090   6.989
B_WL.IDX    5.261  0.004   6.595
B_TANG.IDX  5.201  0.008   5.995
B_PBM.IDX   5.090  0.004   6.477
B_KWON.IDX  5.024  0.023   6.453
B_KPBM.IDX  4.985  0.035   6.511
B_XB.IDX    4.986  0.008   6.358
B_HF.IDX    4.963  0.000   6.163
B_KWON2.IDX 4.949  0.004   6.154
 OK
Maintainer: ‘Kjetil Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Compiled", "by", "Kjetil"),
                      family = "Halvorsen",
                      role = "aut"),
               person(given = "Kjetil",
                      family = "Halvorsen",
                      role = "cre",
                      email = "kjetil1001@gmail.com"))
as necessary.
checkRd: (-1) dilution.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) bayesDccGarch.Rd:91: Lost braces; missing escapes or markup?
    91 | \item{$H_n1 }{ Bayesian prediction of volatilities and co-volatilities for y_{n+1}.}
       |                                                                              ^
checkRd: (-1) bayesDccGarch.Rd:92: Lost braces; missing escapes or markup?
    92 | \item{$R_n1 }{ Bayesian prediction of coditional correlation for y_{n+1}.}
       |                                                                    ^
user system elapsed
find_regimes 3.511   0.04   5.415
 OK
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Carlos Pérez <caaperezag@unal.edu.co>’

The Description field contains
  Cardona-Jiménez (2021) <arXiv:2111.01318>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) GroupSingleVoxelFETS.Rd:53: Lost braces
    53 | online trajectories related to the state parameter, the simulated BOLD responses, \mjseqn{\hat{Y}}{ascii}.
       |                                                                                                   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bayes_colors.R’ ‘bayes_label.R’
Maintainer: ‘Jaejoon Song <jaejoonsong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jaejoon",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "jaejoonsong@gmail.com"),
               person(given = "Satoshi",
                      family = "Morita",
                      role = "aut"),
               person(given = c("J.", "Jack"),
                      family = "Lee",
                      role = "aut"))
as necessary.
user system elapsed
BayesFBHborrow.WBorrow 5.037  0.086   5.894
BayesFBHborrow         4.864  0.153   6.672
 OK
Maintainer: ‘Asael Alonzo Matamoros <asael.alonzo@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Holt.Rd: auto.arima
  Hw.Rd: auto.arima
  LocalLevel.Rd: auto.arima
  autoplot.ts.Rd: geom_forecast, fortify
  forecast.varstan.Rd: forecast.ts, ets, stlf
  fourier.Rd: seasonaldummy
  garch.Rd: auto.arima
  loo.varstan.Rd: psis, pareto-k-diagnostic, loo_compare
  ssm.Rd: auto.arima
  stan_Holt.Rd: auto.arima
  stan_Hw.Rd: auto.arima
  stan_LocalLevel.Rd: auto.arima
  stan_garch.Rd: auto.arima
  stan_ssm.Rd: auto.arima
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘David Ardia <david.ardia.ch@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Doug Fletcher <tug25070@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Douglas",
                      family = "Fletcher",
                      role = "aut"),
               person(given = "Doug",
                      family = "Fletcher",
                      role = "cre",
                      email = "tug25070@temple.edu"))
as necessary.
checkRd: (-1) gMLE.bb.Rd:18: Lost braces
    18 |   \item{optim.method}{optimization method in \code{optim()}{stats}.}
       |                                                            ^
Maintainer: ‘Matthew Carli <carlimm@mymail.vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Wheeler",
                      role = "aut"),
               person(given = "Matthew",
                      family = "Carli",
                      role = c("aut", "cre"),
                      email = "carlimm@mymail.vcu.edu"))
as necessary.
Maintainer: ‘Gordon J. Ross <gordon@gordonjross.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Gordon", "J."),
                    family = "Ross",
                    role = c("aut", "cre"),
                    email = "gordon@gordonjross.co.uk")
as necessary.
Specified C++11: please drop specification unless essential
user system elapsed
continuous_ss_sdf 5.310  0.147   6.775
BayesianFM        4.156  0.063   5.182
 OK
user system elapsed
assessDesign 7.313  0.315   8.542
 OK
checkRd: (-1) bma.bx.cy.Rd:69: Lost braces
    69 | the initial values for parameters in models. For example, inits<-function(){list(alpha=0,beta=0,c=0,var1=0.5,r=1,lamda=0.01)}.
       |                                                                            ^
Maintainer: ‘Fayette Klaassen <klaassen.fayette@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fayette",
                    family = "Klaassen",
                    role = c("aut", "cre"),
                    email = "klaassen.fayette@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_cutoff.R’
checkRd: (-1) DE.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:61: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Margarita Marin <mmarinj@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Margarita",
                      family = "Marin",
                      role = c("aut", "cre"),
                      email = "mmarinj@unal.edu.co"),
               person(given = "Edilberto",
                      family = "Cepeda-Cuervo.",
                      role = "aut"))
as necessary.
Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arthur White <arwhite@tcd.ie>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jingyu He <jingyuhe@cityu.edu.hk>’

The Description field contains
  priors, Hahn, He and Lopes (2018) <arXiv:1806.05738>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
checkRd: (-1) predict.bayeslm.fit.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{X         }{ If call \code{bayeslm} with matrices input \code{x} and {y} but not formula, pass new matrix to predict here. See example for details.}
       |                                                                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  hs_gibbs.Rd: summary.mcmc
  summary.bayeslm.fit.Rd: summary.mcmc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  LN_hierarchical.Rd: lmer, mcmc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jesse Windle <jesse.windle@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Edwin Javier Castillo Carreño <edjcastilloca@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Edwin", "Javier", "Castillo"),
                      family = "Carreño",
                      role = c("aut", "cre"),
                      email = "edjcastilloca@unal.edu.co"),
               person(given = c("Edilberto", "Cepeda"),
                      family = "Cuervo",
                      role = "aut"))
as necessary.
user system elapsed
compute_mallows 4.047  0.125   5.101
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  convolve.Rd: funnel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Luiz Fernando Figueiredo <labmapackage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Laboratorio", "de", "Matematica"),
                      family = "Aplicada",
                      role = "aut",
                      comment = "IM/UFRJ"),
               person(given = c("Luiz", "Fernando"),
                      family = "Figueiredo",
                      role = "cre",
                      email = "labmapackage@gmail.com"))
as necessary.
Maintainer: ‘Joshua Cullen <joshcullen10@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) insert_NAs.Rd:22: Lost braces; missing escapes or markup?
    22 | A data frame where new rows have been inserted to regularize the \code{date} column. This results in values provided for \code{id}, \code{date}, and {dt} while inserting NAs for all other columns. Additionally, observations with duplicate date-times are removed.
       |                                                                                                                                                      ^
user system elapsed
insert_NAs 3.557  0.068   5.127
 OK
Maintainer: ‘Peter Rossi <perossichi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Rossi",
                    role = c("aut", "cre"),
                    email = "perossichi@gmail.com")
as necessary.
Maintainer: ‘Erik Thorsén <erik.thorsen@math.su.se>’

The Description field contains
  (<arXiv:2104.02105>). The Metropolis-Hastings algorithm is designed
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
amend 5.843  0.418   6.666
 OK
Maintainer: ‘Han Yu <hyu9@buffalo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Han",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "hyu9@buffalo.edu"),
               person(given = "Rachael",
                      family = "Blair",
                      role = "aut"),
               person(given = "Janhavi",
                      family = "Moharil",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Yan",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Turek <danielturek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Turek",
                      role = c("aut", "cre"),
                      email = "danielturek@gmail.com"),
               person(given = "Mark",
                      family = "Risser",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1702.00434v2>). Bayesian inference is carried out using Markov
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chengxue Zhong <czhong9106@gmail.com>’

The Description field contains
  (2021) <arXiv:2108.06568>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helper_functions.R’
user system elapsed
bayesplot-colors    4.724  0.008   6.914
MCMC-traces         4.437  0.047   5.668
PPC-test-statistics 4.227  0.029   6.278
 OK
user system elapsed
binom_PRC_h 5.952  0.379   7.811
 OK
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georg",
                      family = "Hahn",
                      role = c("aut", "cre"),
                      email = "ghahn@hsph.harvard.edu"),
               person(given = "Paul",
                      family = "Fearnhead",
                      role = "ctb"),
               person(given = c("Idris", "A."),
                      family = "Eckley",
                      role = "ctb"))
as necessary.
Maintainer: ‘Dries F. Benoit <Dries.Benoit@UGent.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dries", "F."),
                      family = "Benoit",
                      role = c("aut", "cre"),
                      email = "dries.benoit@ugent.be"),
               person(given = "Rahim",
                      family = "Al-Hamzawi",
                      role = "aut"),
               person(given = "Keming",
                      family = "Yu",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
user system elapsed
predict.bayesreg 0.997  0.273   5.486
bayesreg         0.488  0.029   6.082
 OK
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) pulse_of_the_nation.Rd:10: Escaped LaTeX specials: \$
Maintainer: ‘Minsuk Shin <minsuk000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minsuk",
                      family = "Shin",
                      role = c("aut", "cre"),
                      email = "minsuk000@gmail.com"),
               person(given = "Ruoxuan",
                      family = "Tian",
                      role = "aut"))
as necessary.
Maintainer: ‘Jinhui Yang <james.yangjinhui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jinhui",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "james.yangjinhui@gmail.com"),
               person(given = "Haitao",
                      family = "Chu",
                      role = "aut"),
               person(given = "Lifeng",
                      family = "Lin",
                      role = "aut"))
as necessary.
Maintainer: ‘Jean-Michel Marin <jean-michel.marin@umontpellier.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Michel",
                      family = "Marin",
                      role = c("aut", "cre"),
                      email = "jean-michel.marin@umontpellier.fr"),
               person(given = c("Christian", "P."),
                      family = "Robert",
                      role = "aut"))
as necessary.
'library' or 'require' call not declared from: ‘mvtnorm’
user system elapsed
pmmh 5.059  0.056   5.666
 OK
Maintainer: ‘Stephanie van der Pas <s.l.vanderpas@amsterdamumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephanie",
                      family = "van der Pas",
                      role = c("aut", "cre"),
                      email = "s.l.vanderpas@amsterdamumc.nl"),
               person(given = "Ismael",
                      family = "Castillo",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:2005.02889>. In that paper it is also shown that the credible
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
bayesfactor 6.778  0.399   8.843
 OK
Maintainer: ‘Riko Kelter <riko.kelter@uni-siegen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Riko",
                    family = "Kelter",
                    role = c("aut", "cre"),
                    email = "riko.kelter@uni-siegen.de")
as necessary.

The Description field contains
  details about the Gibbs sampler see Kelter (2019) <arXiv:1906.07524>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexia",
                    family = "Jolicoeur-Martineau",
                    role = c("aut", "cre"),
                    email = "alexia.jolicoeur-martineau@mail.mcgill.ca")
as necessary.
checkRd: (-1) BayesTreePrior.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:41: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Robert McCulloch <robert.e.mcculloch@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hugh",
                      family = "Chipman",
                      role = "aut",
                      email = "hugh.chipman@gmail.com"),
               person(given = "Robert",
                      family = "McCulloch",
                      role = c("aut", "cre"),
                      email = "robert.e.mcculloch@gmail.com"))
as necessary.
Maintainer: ‘Inga Schwabe <bayestwin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Inga",
                    family = "Schwabe",
                    role = c("aut", "cre"),
                    email = "bayestwin@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/ingaschwabe/BayesTwin
which should likely be
  https://github.com/ingaschwabe/BayesTwin/issues
instead.
Maintainer: ‘Viet-Phuong La <lvphuong@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘graphs.Rd’:
    \keyword{directed acyclic graphs, bayesvl}
  File ‘plots.Rd’:
    \keyword{directed acyclic graphs, bayesvl, bayesvl [TRUNCATED]
  File ‘stan.Rd’:
    \keyword{directed acyclic graphs, bayesvl}
  File ‘vl2bn.Rd’:
    \keyword{directed acyclic graphs, bayesvl, bayesvl [TRUNCATED]
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stan.Rd: stan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alexander C. Murph <murph290@gmail.com>’

The Description field contains
  al. (2023) <arXiv:2310.02940>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘Alexander C. Murph [aut, cre] (<https://orcid.org/0000-0001-7170-867X>), Reza Mohammadi [ctb, cph] (<https://orcid.org/0000-0001-9538-0648>), Alex Lenkoski [ctb, cph] (<https://orcid.org/0000-0002-6664-0292>), Andrew Johnson [ctb] (andrew.johnson@arjohnsonau.com)’
  Authors@R: ‘Alexander C. Murph [aut, cre] (ORCID: <https://orcid.org/0000-0001-7170-867X>), Reza Mohammadi [ctb, cph] (ORCID: <https://orcid.org/0000-0001-9538-0648>), Alex Lenkoski [ctb, cph] (ORCID: <https://orcid.org/0000-0002-6664-0292>), Andrew Johnson [ctb] (email: andrew.johnson@arjohnsonau.com)’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AgeC14_Computation.Rd: rjags
  AgeS_Computation.Rd: rjags, runjags
  Age_Computation.Rd: jags.model, rjags
  Age_OSLC14.Rd: rjags, runjags
  Generate_DataFile-deprecated.Rd: read_BIN2R, Luminescence
  Generate_DataFile_MG-deprecated.Rd: read_BIN2R
  Model_Age.Rd: rjags
  Model_AgeC14.Rd: rjags
  Model_AgeS.Rd: rjags
  Model_Palaeodose.Rd: rjags
  Palaeodose_Computation.Rd: jags.model, rjags
  create_DataFile.Rd: RLum.Analysis-class
  plot_MCMC.Rd: rjags
  plot_Scatterplots.Rd: rjags
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Maintainer: ‘Edward M.H. Lin <ed.mhlin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Cathy", "W.", "S."),
                      family = "Chen",
                      role = "aut"),
               person(given = c("Edward", "M.H."),
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "ed.mhlin@gmail.com"),
               person(given = "F.C.",
                      family = "Liu",
                      role = "aut"),
               person(given = "Richard",
                      family = "Gerlach",
                      role = "aut"))
as necessary.
Maintainer: ‘Erik W Leppo <Erik.Leppo@tetratech.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rebecca",
                      family = "Murphy",
                      role = "aut"),
               person(given = "Elgin",
                      family = "Perry",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Keisman",
                      role = "aut"),
               person(given = "Jon",
                      family = "Harcum",
                      role = "aut"),
               person(given = c("Erik", "W"),
                      family = "Leppo",
                      role = c("aut", "cre"),
                      email = "erik.leppo@tetratech.com"))
as necessary.
Maintainer: ‘Valeriy Zakamulin <valeriz@uia.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Valeriy",
                    family = "Zakamulin",
                    role = c("aut", "cre"),
                    email = "valeriz@uia.no")
as necessary.
Maintainer: ‘Anton Gagin <av.gagin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anton",
                      family = "Gagin",
                      role = c("aut", "cre"),
                      email = "av.gagin@gmail.com"),
               person(given = c("Igor", "Levin", "with", "contributions", "from", "Charles", "R.", "Hogg"),
                      family = "III",
                      role = "aut"))
as necessary.
checkRd: (-1) runUI.Rd:11: Lost braces
    11 | Runs a \bold{Shiny} application. This function normally does not return; interrupt bold{R} to stop the application (usually by pressing Ctrl+C or Esc).
       |                                                                                        ^
checkRd: (-1) getOperatingSystem.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:30: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Vinicius Mayrink <vdinizm@gmail.com>’

The Description field contains
  <arXiv:2003.05157>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘boot_bw.R’ ‘boot_bw_estimate.R’ ‘post_strat_estimation.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  c3mtc.Rd: c3
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Wang Yudong <yudongw@u.nus.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wang",
                      family = "Yudong",
                      role = c("aut", "cre"),
                      email = "yudongw@u.nus.edu"),
               person(given = "Ye",
                      family = "Zhisheng",
                      role = "aut"),
               person(given = "Cao",
                      family = "Hongyuan",
                      role = "aut"))
as necessary.
Maintainer: ‘Longhai Li <longhai@math.usask.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Longhai",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "longhai@math.usask.ca")
as necessary.
user system elapsed
example 5.942  0.077   6.809
 OK
Found the following files/directories:
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_50_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_50_biascor_1.RData’
Maintainer: ‘Haoran Zhang <hzz0017@auburn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haoran",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzz0017@auburn.edu")
as necessary.
user system elapsed
BayesT   4.546  0.317   6.303
plot.BCC 4.525  0.106   6.011
 OK
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mahdi",
                    family = "Teimouri",
                    role = c("aut", "cre"),
                    email = "teimouri@aut.ac.ir")
as necessary.
checkRd: (-1) goftype1.Rd:4: Lost braces
     4 | \description{The goodness-of-fit (GOF) measures consist of Anderson-Darling (\code{AD}) and Cram\'{e}er-von Misses (\code{CVM}) statistics for progressive type-I interval censoring scheme are given, respectively, by
       |                                                                                                   ^
Maintainer: ‘Ewoud De Troyer <ewoud.detroyer@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aregay",
                      family = "Mengsteab",
                      role = "aut"),
               person(given = "Martin",
                      family = "Otava",
                      role = "aut"),
               person(given = "Tatsiana",
                      family = "Khamiakova",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = c("aut", "cre"),
                      email = "ewoud.detroyer@uhasselt.be"))
as necessary.
Found the following files/directories:
  ‘fabiabreast.txt’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ceac_plot_graph.R’ ‘ceef_plot_graph.R’ ‘ceplane_plot_graph.R’
    ‘contour_graph.R’ ‘eib_plot_graph.R’ ‘evppi.default.R’
    ‘evppi_plot_ggplot.R’ ‘info_rank_graph.R’ ‘plot.bcea.R’
    ‘prep_ceplane_params.R’
Maintainer: ‘Denis Talbot <denis.talbot@fmed.ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Talbot",
                      role = c("aut", "cre"),
                      email = "denis.talbot@fmed.ulaval.ca"),
               person(given = "Genevieve",
                      family = "Lefebvre",
                      role = "aut"),
               person(given = "Juli",
                      family = "Atherton",
                      role = "aut"),
               person(given = "Yohann",
                      family = "Chiu.",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bcfraildv.Rd: bcfrailph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  shrgamsp.Rd: coxph
  simstdybcf.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jared S. Murray <jared.murray@mccombs.utexas.edu>’

The Description field contains
  <arXiv:1309.1906>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nicola Lunardon <nicola.lunardon@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nicola",
                      family = "Lunardon",
                      role = c("aut", "cre"),
                      email = "nicola.lunardon@unimib.it"),
               person(given = "Daniel",
                      family = "Scharfstein",
                      role = "aut",
                      email = "dscharf@jhu.edu"))
as necessary.
Maintainer: ‘J. Jack Lee <jjlee@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nan",
                      family = "Chen",
                      role = "aut"),
               person(given = c("J.", "Jack"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "jjlee@mdanderson.org"))
as necessary.
Maintainer: ‘Jiehuan Sun <jiehuan.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiehuan",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "jiehuan.sun@gmail.com"),
               person(given = c("Jose", "D."),
                      family = "Herazo-Maya",
                      role = "aut"),
               person(given = "Naftali",
                      family = "Kaminski",
                      role = "aut"),
               person(given = "Hongyu",
                      family = "Zhao",
                      role = "aut"),
               person(given = c("Joshua", "L."),
                      family = "Warren,",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Eliezer Gurarie <egurarie@esf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eliezer",
                    family = "Gurarie",
                    role = c("aut", "cre"),
                    email = "egurarie@esf.edu")
as necessary.
checkRd: (-1) WindowSweep.Rd:32: Lost braces
    32 | `code{\link{GetVT}}`.   Otherwise, any column (e.g. \code{"Depth"}) in the 
       |      ^
checkRd: (-1) WindowSweep.Rd:36: Lost braces
    36 | \code{T.mid}  from the output of the `code{\link{GetVT}}`.}
       |                                           ^
Maintainer: ‘Fanni Zhang <rstatpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fanni",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "rstatpackages@gmail.com")
as necessary.
Maintainer: ‘Duc-Khanh To  <toduc@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duc-Khanh",
                      family = "To",
                      role = c("aut", "cre"),
                      email = "toduc@stat.unipd.it"),
               person(given = c("with", "contributions", "from", "Monica"),
                      family = "Chiogna",
                      role = "aut"),
               person(given = "Gianfranco",
                      family = "Adimari",
                      role = "aut"))
as necessary.
Maintainer: ‘Jiehuan Sun <jiehuan.sun@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiehuan",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "jiehuan.sun@yale.edu"),
               person(given = c("Joshua", "L."),
                      family = "Warren",
                      role = "aut"),
               person(given = "Hongyu",
                      family = "Zhao",
                      role = "aut"))
as necessary.
user system elapsed
BCSub 4.477  0.048   5.262
 OK
Maintainer: ‘Valentinian Mihai Lungu <valentinian.mihai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ioannis",
                      family = "Papageorgiou",
                      role = "aut"),
               person(given = c("Valentinian", "Mihai"),
                      family = "Lungu",
                      role = c("aut", "cre"),
                      email = "valentinian.mihai@gmail.com"),
               person(given = "Ioannis",
                      family = "Kontoyiannis",
                      role = "aut"))
as necessary.

The Description field contains
  April 2022. Available at: <arXiv:2007.14900> [stat.ME], July 2020] and
  using Bayesian Context Trees' <arXiv:2203.04341> [stat.ME], March
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
checkRd: (-1) gene_s.Rd:17: Lost braces; missing escapes or markup?
    17 | giving the virus access to the cell and thus facilitating the COVID-19 disease. The gene sequence is mapped to the alphabet {0,1,2,3} via the obvious map A->0, C->1, G->2, T->3.
       |                                                                                                                             ^
checkRd: (-1) sars_cov_2.Rd:16: Lost braces; missing escapes or markup?
    16 | It consists of n = 29903 base pairs. The gene sequence is mapped to the alphabet {0,1,2,3} via the obvious map A->0, C->1, G->2, T->3.
       |                                                                                  ^
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

The Description field contains
  article (at <arXiv:0908.2062>) and Perry's 2009 PhD thesis (at
  <arXiv:0909.3052>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Guzman Santafe <guzman.santafe@unavarra.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guzman",
                      family = "Santafe",
                      role = c("aut", "cre"),
                      email = "guzman.santafe@unavarra.es"),
               person(given = "Borja",
                      family = "Calvo",
                      role = "aut"),
               person(given = "Aritz",
                      family = "Perez",
                      role = "aut"),
               person(given = c("Jose", "A."),
                      family = "Lozano",
                      role = "aut"))
as necessary.
checkRd: (-1) bde.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Collin Nolte <collin-nolte@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Collin",
                      family = "Nolte",
                      role = c("aut", "cre"),
                      email = "collin-nolte@uiowa.edu"),
               person(given = "Michael",
                      family = "Seedorff",
                      role = "aut"),
               person(given = "Jacob",
                      family = "Oleson",
                      role = "aut"),
               person(given = "Grant",
                      family = "Brown",
                      role = "aut"),
               person(given = "Joseph",
                      family = "Cavanaugh",
                      role = "aut"),
               person(given = "Bob",
                      family = "McMurray",
                      role = "aut"))
as necessary.
Maintainer: ‘Manuel Wiesenfarth <m.wiesenfarth@dkfz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Annette",
                      family = "Kopp-Schneider",
                      role = "aut"),
               person(given = "Manuel",
                      family = "Wiesenfarth",
                      role = c("aut", "cre"),
                      email = "m.wiesenfarth@dkfz.de"),
               person(given = "Ulrich",
                      family = "Abel",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>’

File 'R/bdpv-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Solvi Rognvaldsson <solviro@gmail.com>’

The Description field contains
  described in Hrafnkelsson et al. (2020) <arXiv:2010.04769>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘dump.txt’
Maintainer: ‘Terry Therneau <therneau.terry@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Terry",
                    family = "Therneau",
                    role = c("aut", "cre"),
                    email = "therneau.terry@mayo.edu")
as necessary.
Maintainer: ‘Hamed Haselimashhadi <hamedhaseli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hamed",
                    family = "Haselimashhadi",
                    role = c("aut", "cre"),
                    email = "hamedhaseli@gmail.com")
as necessary.
Maintainer: ‘Peter Kampstra <beanplot@kampstra.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Kampstra",
                    role = c("aut", "cre"),
                    email = "beanplot@kampstra.net")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chenguang Wang <cwang68@jhmi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenguang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "cwang68@jhmi.edu"),
               person(given = "Ravi",
                      family = "Varadhan",
                      role = "aut"),
               person(given = c("Trustees", "of", "Columbia"),
                      family = "University",
                      role = "cph",
                      comment = "tools/make_cpp.R, R/stanmodels.R"))
as necessary.
Maintainer: ‘Panagiotis Papastamoulis <papapast@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panagiotis",
                    family = "Papastamoulis",
                    role = c("aut", "cre"),
                    email = "papapast@yahoo.gr")
as necessary.

The Description field contains
  Papastamoulis et al (2017) <arXiv:1709.06111> for a detailed
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘beast_plot_toy.pdf’
Maintainer: ‘Gideon Bradburd <bradburd@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gideon",
                    family = "Bradburd",
                    role = c("aut", "cre"),
                    email = "bradburd@umich.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘BeeBDCQuery.Rd’ ‘continentOutlieRs.Rd’ ‘countryOutlieRs.Rd’
    ‘harmoniseR.Rd’
user system elapsed
jbd_Ctrans_chunker 4.646  0.229   5.533
continentOutlieRs  4.084  0.112   5.779
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_contrast.R’ ‘apply_contrast.Rd’ ‘average_predictions.Rd’
    ‘estimate_varcov.R’ ‘estimate_varcov.Rd’ ‘get_marginal_effect.R’
    ‘get_marginal_effect.Rd’ ‘predict_counterfactuals.R’
user system elapsed
ppc.beeSurvValidation 8.342   0.07   9.595
 OK
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘fitting.R’
Maintainer: ‘Peter Thuresson <jpeter.thuresson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Thuresson",
                    role = c("aut", "cre"),
                    email = "jpeter.thuresson@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CIBER.Rd: ggplot2, biAxisDiamondPlot, diamondPlot, gtable
  determinantStructure.Rd: data.tree
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jakub Nowosad <nowosad.jakub@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Valentin Thorey <valentin@dreem.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dylan",
                      family = "Heirstraeten",
                      role = "aut"),
               person(given = "Valentin",
                      family = "Thorey",
                      role = "cre",
                      email = "valentin@dreem.com"))
as necessary.
Maintainer: ‘Carlos Cinelli <carloscinelli@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Cinelli",
                    role = c("aut", "cre"),
                    email = "carloscinelli@hotmail.com")
as necessary.
Maintainer: ‘Vitor Hugo Moreau <vitorhmc@ufba.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vitor", "Hugo"),
                    family = "Moreau",
                    role = c("aut", "cre"),
                    email = "vitorhmc@ufba.br")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  generate_model_data.Rd: tibble
  kit_summary_table.Rd: stanfit
  plot_kit_use.Rd: stanfit, ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Grace Chiu <bentcable@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Grace",
                      family = "Chiu",
                      role = c("aut", "cre"),
                      email = "bentcable@gmail.com"),
               person(given = c("Virginia", "Institute", "of", "Marine"),
                      family = "Science",
                      role = "aut"),
               person(given = c("William", "&", "Mary", "PO", "Box"),
                      family = "1346",
                      role = "aut"),
               person(given = "Gloucester",
                      family = "Point",
                      role = "aut"),
               person(given = "VA",
                      family = "23062",
                      role = "aut"),
               person(family = "USA",
                      role = "aut"))
as necessary.
checkRd: (-1) sockeye.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sockeye.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stagnant.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stagnant.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hill.Rd:39: Lost braces; missing escapes or markup?
    39 | \code{a} in {0, 1, 2} (see details))}
       |             ^
checkRd: (-1) read_ambi.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_ambi.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_twn.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_twn.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_twn.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyun-Seop",
                    family = "Bae",
                    role = c("aut", "cre"),
                    email = "k@acr.kr")
as necessary.
Maintainer: ‘Alberto Caimo <alberto.caimo1@ucd.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alberto",
                      family = "Caimo",
                      role = c("aut", "cre"),
                      email = "alberto.caimo1@ucd.ie"),
               person(given = "Lampros",
                      family = "Bouranis",
                      role = "aut"),
               person(given = "Robert",
                      family = "Krause",
                      role = "ctb"))
as necessary.
Maintainer: ‘Berry Boessenkool <berry-b@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Berry",
                    family = "Boessenkool",
                    role = c("aut", "cre"),
                    email = "berry-b@gmx.de")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/brry/berryFunctions
which should likely be
  https://github.com/brry/berryFunctions/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  l2array.Rd: abind
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
bes_g_gao 5.645  0.314   9.217
 OK
user system elapsed
bess 4.604  0.124   6.084
 OK
Maintainer: ‘Yuanhao Lai <ylai72@uwo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "A.I.",
                      family = "McLeod",
                      role = "aut"),
               person(given = "Changjiang",
                      family = "Xu",
                      role = "aut"),
               person(given = "Yuanhao",
                      family = "Lai",
                      role = c("aut", "cre"),
                      email = "ylai72@uwo.ca"))
as necessary.
Maintainer: ‘Jack Kuipers <jack.kuipers@bsse.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jack",
                      family = "Kuipers",
                      role = c("aut", "cre"),
                      email = "jack.kuipers@bsse.ethz.ch"),
               person(given = "Giusi",
                      family = "Moffa",
                      role = "aut"))
as necessary.
Maintainer: ‘Beaulac Cedric <cedric@utstat.toronto.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Rosentahl (2019) <arXiv:1804.10168>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
VI         4.657  0.000   5.821
FPredict   4.495  0.000   5.388
BaggedBEST 4.481  0.012   5.109
 OK
Specified C++11: please drop specification unless essential
checkRd: (-1) gen.data.Rd:42: Lost braces
    42 | code{cortype = 2} denotes the constant structure, where the \eqn{(i,j)} entry of covariance
       |     ^
Maintainer: ‘Haiming Zhou <haiming2019@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Telmo M Silva Filho <tmfilho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Telmo", "M", "Silva"),
                      family = "Filho",
                      role = c("aut", "cre"),
                      email = "tmfilho@gmail.com"),
               person(given = "Meelis",
                      family = "Kull",
                      role = "aut"))
as necessary.
user system elapsed
beta_kr 0.98  0.048   6.772
 OK
Maintainer: ‘Haakon Eidem Haakstad <h.e.haakstad@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Haakon", "Eidem"),
                    family = "Haakstad",
                    role = c("aut", "cre"),
                    email = "h.e.haakstad@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  functional.betapart.core.Rd: convhulln
  functional.betapart.core.pairwise.Rd: convhulln
  inter_geom.Rd: intersectn
  qhull.opt.Rd: convhulln
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
betapower 4.725  0.157   6.157
 OK
Maintainer: ‘Luis Cayuela <luis.cayuela@urjc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Cayuela",
                      role = c("aut", "cre"),
                      email = "luis.cayuela@urjc.es"),
               person(given = "Marcelino",
                      family = "de la Cruz",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘adonis_pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
  File ‘cca_pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
  File ‘mantel_pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
  File ‘pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
  File ‘rda_pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
user system elapsed
betamix      6.216  0.119   9.557
betar_family 5.825  0.204   9.124
plot.betareg 3.582  0.081   5.574
 OK
909c909
< This is mgcv 1.9-3. For overview type 'help("mgcv-package")'.
---
> This is mgcv 1.9-1. For overview type 'help("mgcv-package")'.
Maintainer: ‘Michele De Meo <micheledemeo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michele",
                    family = "De Meo",
                    role = c("aut", "cre"),
                    email = "micheledemeo@gmail.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Qingyuan Zhao <qyzhao@statslab.cam.ac.uk>’

The Description field contains
  <arXiv:2004.07743>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) BETSsearch.Rd:56: Lost braces
    56 |        \item{To exclude whole expressions from the search, surround them with code{' '} and insert a \code{~} before each of them.
       |                                                                                   ^
checkRd: (-1) dummy.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{date}{a \code{list}. The periods for which the dummy must be set to one. Periods must be represented as {integer vectors}, as described for \code{start} and \code{end}.}
       |                                                                                                               ^
checkRd: (-1) dummy.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{from}{An \code{integer vector} The starting period of a sequence of perids for which the dummy must be set to one. Periods must be represented as {integer vectors}, as described for \code{start} and \code{end}.}
       |                                                                                                                                                         ^
checkRd: (-1) dummy.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{to}{The ending period of a sequence of perids for which the dummy must be set to one. Periods must be represented as {integer vectors}, as described for \code{start} and \code{end}.}
       |                                                                                                                            ^
Maintainer: ‘Chris Aberson <cla18@humboldt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Aberson",
                    role = c("aut", "cre"),
                    email = "cla18@humboldt.edu")
as necessary.
Maintainer: ‘Blondeau Da Silva Stephane <Stephane.Blondeau-Da-Silva@ac-limoges.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Blondeau", "Da", "Silva"),
                    family = "Stephane",
                    role = c("aut", "cre"),
                    email = "stephane.blondeau-da-silva@ac-limoges.fr")
as necessary.
Maintainer: ‘Aaron Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Olsen",
                    role = c("aut", "cre"),
                    email = "aarolsen@gmail.com")
as necessary.
user system elapsed
surv.simulate 5.864  0.012   7.175
bfi           5.375  0.023   6.602
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bfsMaps-package.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CombinePolygons.Rd: st_union
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Giampiero Marra <giampiero.marra@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giampiero",
                      family = "Marra",
                      role = c("aut", "cre"),
                      email = "giampiero.marra@ucl.ac.uk"),
               person(given = "Raffaella",
                      family = "Calabrese",
                      role = "aut"),
               person(given = c("Silvia", "Angela"),
                      family = "Osmetti",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
getK 3.918  0.056   5.202
 OK
Author field differs from that derived from Authors@R
  Author:    ‘S. Mason Garrison [aut, cre] (<https://orcid.org/0000-0002-4804-6003>), Michael D. Hunter [aut] (<https://orcid.org/0000-0002-3651-6709>), Xuanyu Lyu [aut] (<https://orcid.org/0000-0002-2841-5529>), Rachel N. Good [ctb], Jonathan D. Trattner [aut] (<https://orcid.org/0000-0002-1097-7603>, https://www.jdtrat.com/), S. Alexandra Burt [aut] (<https://orcid.org/0000-0001-5538-7431>)’
  Authors@R: ‘S. Mason Garrison [aut, cre] (ORCID: <https://orcid.org/0000-0002-4804-6003>), Michael D. Hunter [aut] (ORCID: <https://orcid.org/0000-0002-3651-6709>), Xuanyu Lyu [aut] (ORCID: <https://orcid.org/0000-0002-2841-5529>), Rachel N. Good [ctb], Jonathan D. Trattner [aut] (ORCID: <https://orcid.org/0000-0002-1097-7603>, url: https://www.jdtrat.com/), S. Alexandra Burt [aut] (ORCID: <https://orcid.org/0000-0001-5538-7431>)’
Maintainer: ‘Przemyslaw Biecek <Przemyslaw.Biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Przemyslaw", "Biecek", "\\&", "Ewa"),
                      family = "Szczurek",
                      role = "aut"),
               person(given = "Przemyslaw",
                      family = "Biecek",
                      role = "cre",
                      email = "Przemyslaw.Biecek@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) bgmm-package.Rd:23: Escaped LaTeX specials: \&
Maintainer: ‘Emilio Akira Morones Ishikawa <emiliomorones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("L.", "E."),
                      family = "Nieto-Barajas",
                      role = "aut"),
               person(given = c("J.", "A.", "Garcia"),
                      family = "Bueno",
                      role = "aut"),
               person(given = c("E.A.", "Morones"),
                      family = "Ishikawa",
                      role = "aut"),
               person(given = "J.",
                      family = "Pliego",
                      role = "aut"),
               person(given = c("Emilio", "Akira", "Morones"),
                      family = "Ishikawa",
                      role = "cre",
                      email = "emiliomorones@gmail.com"))
as necessary.
Maintainer: ‘Yin Song <yinsong@uvic.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yin",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "yinsong@uvic.ca"),
               person(given = "Shufei",
                      family = "Ge",
                      role = "aut"),
               person(given = "Liangliang",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jiguo",
                      family = "Cao",
                      role = "aut"),
               person(given = "Keelin",
                      family = "Greenlaw",
                      role = "aut"),
               person(given = "Mary",
                      family = "Lesperance",
                      role = "aut"),
               person(given = c("Farouk", "S."),
                      family = "Nathoo",
                      role = "aut"))
as necessary.
checkRd: (-1) sp_bgsmtr.Rd:42: Lost braces; missing escapes or markup?
    42 | \item{c.star}{The threshold for computing posterior tail probabilities p_{ij} for Bayesian FDR as defined in Section 3.2 of  Song, Ge et al.(2019). If not specified the default is to set this threshold as the minimum posterior standard deviation, where the minimum is taken over all regression coefficients in the model.}
       |                                                                          ^
Author field differs from that derived from Authors@R
  Author:    ‘Pedro C. Brom [aut, cre, cph] (<https://orcid.org/0000-0002-1288-7695>, http://lattes.cnpq.br/0154064396756002), Cira E. G. Otiniano [aut, cph] (<https://orcid.org/0000-0002-5619-0478>, http://lattes.cnpq.br/0307717595727716), Roberto Vila [aut, cph] (<https://orcid.org/0000-0003-1073-0114>, http://lattes.cnpq.br/4978745622057574), Marcelo B. Pereira [aut, cph] (<https://orcid.org/0000-0002-1182-5193>, https://lattes.cnpq.br/9358366674842900)’
  Authors@R: ‘Pedro C. Brom [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-1288-7695>, Lattes: http://lattes.cnpq.br/0154064396756002), Cira E. G. Otiniano [aut, cph] (ORCID: <https://orcid.org/0000-0002-5619-0478>, Lattes: http://lattes.cnpq.br/0307717595727716), Roberto Vila [aut, cph] (ORCID: <https://orcid.org/0000-0003-1073-0114>, Lattes: http://lattes.cnpq.br/4978745622057574), Marcelo B. Pereira [aut, cph] (ORCID: <https://orcid.org/0000-0002-1182-5193>, Lattes: https://lattes.cnpq.br/9358366674842900)’
user system elapsed
bgvar 5.663  0.055   6.809
 OK
Maintainer: ‘Kjetil B.Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ernesto",
                      family = "Barrios",
                      role = "aut"),
               person(given = "Kjetil",
                      family = "B.Halvorsen",
                      role = "cre",
                      email = "kjetil1001@gmail.com"))
as necessary.
checkRd: (-1) dotPlot.Rd:56: Escaped LaTeX specials: \&
Maintainer: ‘Stephan Wojciekowski <stephan.wojciekowski@boehringer-ingelheim.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Agner Fog <agner@agner.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Agner",
                    family = "Fog",
                    role = c("aut", "cre"),
                    email = "agner@agner.org")
as necessary.
Maintainer: ‘De Troyer Ewoud <ewoud.detroyer@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("De", "Troyer"),
                    family = "Ewoud",
                    role = c("aut", "cre"),
                    email = "ewoud.detroyer@uhasselt.be")
as necessary.
user system elapsed
conceptualStructure 3.216  0.136   5.427
 OK
Maintainer: ‘Aurélien Goutsmedt <agoutsmedt@hotmail.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  detect_keys.Rd: read_rmd
  doi2bib.Rd: cr_cn
  reflist.Rd: write_rmd, render_rmd
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Running examples in ‘biblio-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: doi2bib
> ### Title: Downloading bibliogrphic references from DOIs
> ### Aliases: doi2bib
> 
> ### ** Examples
> 
> ## Retrieve bibliographic entries for two publications
> dois <- c("10.1111/1748-5967.12330",
+     "10.1016/j.envsci.2019.03.017")
> 
> bibrefs <- doi2bib(dois)
Warning: Failure in resolving '10.1111/1748-5967.12330'. See error detail in results.
Warning: Failure in resolving '10.1016/j.envsci.2019.03.017'. See error detail in results.
Error in `$<-.data.frame`(`*tmp*`, "content", value = NA_character_) : 
  replacement has 1 row, data has 0
Calls: doi2bib -> read_bib -> $<- -> $<-.data.frame
Execution halted
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mahdi",
                    family = "Teimouri",
                    role = c("aut", "cre"),
                    email = "teimouri@aut.ac.ir")
as necessary.
checkRd: (-1) Jeffreysbs.Rd:17: Escaped LaTeX specials: \&
Maintainer: ‘Alexander F. Lapanowski <aflapan@gmail.com>’

The Description field contains
  <arXiv:2005.03858>.  Also includes methods for non-linear discriminant
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
user system elapsed
biclustermd      3.872  0.157   5.647
tune_biclustermd 1.677  0.030   7.704
 OK
Maintainer: ‘Sebastian Kaiser <dr.sebastian.kaiser@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastian",
                      family = "Kaiser",
                      role = c("aut", "cre"),
                      email = "dr.sebastian.kaiser@gmail.com"),
               person(given = "Rodrigo",
                      family = "Santamaria",
                      role = "aut"),
               person(given = "Tatsiana",
                      family = "Khamiakova",
                      role = "aut"),
               person(given = "Martin",
                      family = "Sill",
                      role = "aut"),
               person(given = "Roberto",
                      family = "Theron",
                      role = "aut"),
               person(given = "Luis",
                      family = "Quintales",
                      role = "aut"),
               person(given = "Friedrich",
                      family = "Leisch",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = "aut"),
               person(given = "Sami",
                      family = "Leon.",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  diagnosticTest.Rd: additivityTests
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Polina Suter <polina.suter@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Polina",
                      family = "Suter",
                      role = c("aut", "cre"),
                      email = "polina.suter@gmail.com"),
               person(given = "Jack",
                      family = "Kuipers",
                      role = "aut"))
as necessary.
checkRd: (-1) BiDimRegression.Rd:29: Lost braces; missing escapes or markup?
    29 | \item \code{euclidean.df1, affine.df1} -  degrees of freedom of the nominator used for the F-statistics propagated by Nakaya (1997); df1 = p-2, with p is the number of elements  needed to calculate the referring model: p=4 for the Euclidean and p=6 for the affine geometry {Nakaya, 1997, Table 1}.
       |                                                                                                                                                                                                                                                                                  ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "BIFIE",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Konrad",
                      family = "Oberwimmer",
                      role = "aut"))
as necessary.
Maintainer: ‘Wojciech Rosa <w.rosa@pollub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wojciech",
                    family = "Rosa",
                    role = c("aut", "cre"),
                    email = "w.rosa@pollub.pl")
as necessary.
Maintainer: ‘Gabriel Martos <gmartos@utdt.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘entropy.fd.Rd’:
    \keyword{rkhs, Entropy}
Maintainer: ‘Steve Mack <Steven.Mack@ucsf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Derek",
                      family = "Pappas",
                      role = "aut",
                      email = "djpappas75@gmail.com"),
               person(given = "Steve",
                      family = "Mack",
                      role = c("aut", "cre"),
                      email = "Steven.Mack@ucsf.edu"),
               person(given = "Jill",
                      family = "Hollenbach",
                      role = "aut",
                      email = "Jill.Hollenbach@ucsf.edu"))
as necessary.
user system elapsed
add_neighbour 5.019  0.166   7.495
 OK
user system elapsed
bigergm 6.051  0.087   5.894
 OK
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
Found the following calls to data() loading into the global environment:
File ‘biglm/R/bigglm.R’:
  data(reset = TRUE)
  data(reset = FALSE)
See section ‘Good practice’ in ‘?data’.
Maintainer: ‘Joan Garriga <jgarriga@ceab.csic.es>’

The Description field contains
  F. (2018), <arXiv:1812.09869>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++14: please drop specification unless essential
checkRd: (-1) bdm.ptsne.Rd:47: Lost braces; missing escapes or markup?
    47 | By default the algorithm is structured in \eqn{\sqrt{n}} epochs of \eqn{\sqrt{z}} iterations each, where \var{n} is the dataset size and \var{z} is the thread-size (\eqn{z=n*layers/threads}). The running time of the algorithm is then determined by \eqn{epochs*iters*t_i+ epochs*t_e} where \var{t_{i}} is the running time of a single iteration and \var{t_{e}} is the inter-epoch running time.
       |                                                                                                                                                                                                                                                                                                         ^
checkRd: (-1) bdm.ptsne.Rd:47: Lost braces; missing escapes or markup?
    47 | By default the algorithm is structured in \eqn{\sqrt{n}} epochs of \eqn{\sqrt{z}} iterations each, where \var{n} is the dataset size and \var{z} is the thread-size (\eqn{z=n*layers/threads}). The running time of the algorithm is then determined by \eqn{epochs*iters*t_i+ epochs*t_e} where \var{t_{i}} is the running time of a single iteration and \var{t_{e}} is the inter-epoch running time.
       |                                                                                                                                                                                                                                                                                                                                                                   ^
Maintainer: ‘Ruoqi Yu <ruoqiyu125@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ruoqi",
                    family = "Yu",
                    role = c("aut", "cre"),
                    email = "ruoqiyu125@gmail.com")
as necessary.
user system elapsed
nfmatch 3.565  0.148   5.913
check   3.506  0.171   5.024
 OK
Maintainer: ‘Cristian Pachón García <cc.pachon@gmail.com>’

The Description field contains
  proposed by Delicado P. and C. Pachón-García (2021) <arXiv:2007.11919>
  (2021) <arXiv:2007.11919> (original proposal).  - Fast MDS, proposed by
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
checkRd: (-1) pQF.Rd:30: Lost braces; missing escapes or markup?
    30 | When \code{M} is not square, a randomised estimator for the trace of \code{crossprod(M)^2} is used. This is the sample size. When \code{M} is of \code{"matrixfree"} and does not include the trace of {crossprod(M)} as a component, this sample size will also be used to compute that. See Hutchinson reference. }
       |                                                                                                                                                                                                        ^
Maintainer: ‘Chibisi Chima-Okereke <chibisi@active-analytics.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chibisi",
                    family = "Chima-Okereke",
                    role = c("aut", "cre"),
                    email = "chibisi@active-analytics.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DBI.Rd: DBIObject-class, DBIDriver-class, DBIConnection-class,
    DBIResult-class
  bigquery.Rd: DBIDriver-class, DBIConnection-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
snp_clumping 7.731  0.019   8.429
snp_autoSVD  7.116  0.031   7.574
 OK
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘bigsplines-package.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘bigssa.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘bigssg.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘bigssp.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘bigtps.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘makessa.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘makessg.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘makessp.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘ordspline.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigspline.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigssa.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigssg.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigssp.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigtps.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.ordspline.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘ssBasis.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
user system elapsed
as_scaling_fun 5.197  0.085   5.382
big_randomSVD  4.187  0.088   5.484
 OK
Maintainer: ‘Aliasghar Tarkhan <atarkhan@uw.edu>’

The Description field contains
  <arXiv:2003.00116v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michael J. Kane <bigmemoryauthors@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "J."),
                      family = "Kane",
                      role = c("aut", "cre"),
                      email = "kaneplusplus@gmail.com"),
               person(given = c("John", "W."),
                      family = "Emerson",
                      role = "aut",
                      email = "jayemerson@gmail.com"))
as necessary.
Maintainer: ‘Chenguang Wang <cwang68@jhmi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenguang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "cwang68@jhmi.edu"),
               person(given = "Chiung-Yu",
                      family = "Huang",
                      role = "aut"),
               person(given = "Mei-Cheng",
                      family = "Wang",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) VARXFit.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXLagCons.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXLagCons.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘M. Helena Goncalves <mhgoncal@ualg.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("M.", "Helena"),
                      family = "Goncalves",
                      role = c("aut", "cre"),
                      email = "mhgoncal@ualg.pt"),
               person(given = c("M.", "Salome"),
                      family = "Cabral",
                      role = "aut"),
               person(given = "Adelchi",
                      family = "Azzalini",
                      role = "aut"),
               person(given = c("apart", "from", "a", "set", "of", "Fortran-77", "subroutines", "written", "by", "R."),
                      family = "Piessens",
                      role = "aut"),
               person(given = "E.",
                      family = "de Doncker",
                      role = "aut"),
               person(given = c("belonging", "to", "the", "suite"),
                      family = "\"Quadpack\".",
                      role = "aut"))
as necessary.
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Mundus",
                      role = "aut"),
               person(given = "Christoph",
                      family = "Müssel",
                      role = "aut"),
               person(given = "Florian",
                      family = "Schmid",
                      role = "aut"),
               person(given = "Ludwig",
                      family = "Lausser",
                      role = "aut"),
               person(given = c("Tamara", "J."),
                      family = "Blätte",
                      role = "aut"),
               person(given = "Martin",
                      family = "Hopfensitz",
                      role = "aut"),
               person(given = c("Hans", "A."),
                      family = "Kestler",
                      role = "aut"),
               person(given = "Hans",
                      family = "Kestler",
                      role = "cre",
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
File ‘Binarize/libs/Binarize.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Navinkumar Nedunchezhian <navinkumar.nedunchezhian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Navinkumar",
                    family = "Nedunchezhian",
                    role = c("aut", "cre"),
                    email = "navinkumar.nedunchezhian@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
user system elapsed
BinomialEMVS 6.632  0.469   9.078
 OK
Maintainer: ‘Chih-Li Sung <iamdfchile@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chih-Li",
                    family = "Sung",
                    role = c("aut", "cre"),
                    email = "iamdfchile@gmail.com")
as necessary.

The Description field contains
  can be seen in Sung et al (2017) <arXiv:1705.02511>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Ista",
                      family = "Zahn",
                      role = "aut"),
               person(given = "Rob",
                      family = "Hyndman",
                      role = "aut"))
as necessary.
Maintainer: ‘Josué M. Polanco-Martínez <josue.m.polanco@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: josue.m.polanco@gmail.com
    From: man/BINCOR-package.Rd
  URI: josue.m.polanco@gmail.com
    From: man/bin_cor.Rd
  URI: josue.m.polanco@gmail.com
    From: man/ccf_ts.Rd
  URI: josue.m.polanco@gmail.com
    From: man/cor_ts.Rd
  URI: josue.m.polanco@gmail.com
    From: man/plot_ts.Rd
  URI: mvkorpel@iki.fi
    From: man/redfitMinls.Rd
  URI: mvkorpel@iki.fi
    From: man/redfitTauest.Rd
Found the following files/directories:
  ‘ccf_ccf_ID31_ID32_res.jpg’ ‘ccf_ccf_ID31_ID32_res.pdf’
  ‘output_ENSO_NHSST.tmp’ ‘plot_plot_ts_RAW_BIN_enso_sst.pdf’
  ‘plot_plot_ts_RAW_BIN_enso_sst01.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst02.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst03.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst04.png’ ‘plot_ts_ACER_ABRUPT.pdf’
  ‘plot_ts_ACER_ABRUPT01.png’ ‘plot_ts_ACER_ABRUPT02.png’
  ‘plot_ts_ACER_ABRUPT03.png’ ‘plot_ts_ACER_ABRUPT04.png’
  ‘salida_ACER_ABRUPT.tmp’ ‘scaterplot_scatterplot_ENSO_SST.jpg’
  ‘scaterplot_scatterplot_ENSO_SST.pdf’
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastian",
                      family = "Gibb",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Maintainer: ‘Samuel V. Scarpino <s.scarpino@northeastern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Samuel", "V."),
                      family = "Scarpino",
                      role = c("aut", "cre"),
                      email = "s.scarpino@northeastern.edu"),
               person(given = "Paul",
                      family = "von Hippel",
                      role = "aut"),
               person(given = "Igor",
                      family = "Holas",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URI:
  URI: doi.org/10.1177/0081175015599807
    From: inst/CITATION
Maintainer: ‘Berkley Shands <rpackages@biorankings.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Terrence",
                      family = "Brooks",
                      role = "aut"),
               person(given = "Berkley",
                      family = "Shands",
                      role = c("aut", "cre"),
                      email = "rpackages@biorankings.com"),
               person(given = "Skye",
                      family = "Buckner-Petty",
                      role = "aut"),
               person(given = c("Patricio", "S."),
                      family = "La Rosa",
                      role = "aut"),
               person(given = "Elena",
                      family = "Deych",
                      role = "aut"),
               person(given = c("William", "D."),
                      family = "Shannon",
                      role = "aut"))
as necessary.
Maintainer: ‘Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>’

File 'R/binGroup-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Matt Nunes <nunesrpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Nunes",
                    role = c("aut", "cre"),
                    email = "nunesrpackages@gmail.com")
as necessary.
Maintainer: ‘Clarke van Steenderen <vsteenderen@gmail.com>’

The Description field contains
  <https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/1365-2745.12869>,
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
Maintainer: ‘Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frank",
                    family = "Schaarschmidt",
                    role = c("aut", "cre"),
                    email = "schaarschmidt@biostat.uni-hannover.de")
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Sundar Dorai-Raj <sdorairaj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sundar",
                    family = "Dorai-Raj",
                    role = c("aut", "cre"),
                    email = "sundar.dorai-raj@pdf.com")
as necessary.
checkRd: (-1) binom.confint.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:32-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:45: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yue",
                      family = "Wang",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ping Liu <ping.liu@unimelb.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sergei Izrailev <sizrailev@jabiruventures.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergei",
                    family = "Izrailev",
                    role = c("aut", "cre"),
                    email = "sizrailev@jabiruventures.com")
as necessary.
user system elapsed
BinSegBstrap 5.704  0.003   7.218
 OK
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jenn",
                      family = "Kirk",
                      role = "aut"),
               person(given = c("Michael", "P."),
                      family = "Fay",
                      role = c("aut", "cre"),
                      email = "mfay@niaid.nih.gov"))
as necessary.
Maintainer: ‘Dave Hunter <dhunter@westmont.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "J."),
                      family = "Hunter",
                      role = "aut"),
               person(given = "McKalie",
                      family = "Drown",
                      role = "aut"),
               person(given = "Dave",
                      family = "Hunter",
                      role = "cre",
                      email = "dhunter@westmont.edu"))
as necessary.
Maintainer: ‘Yingjie Feng <fengyingjiepku@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matias", "D."),
                      family = "Cattaneo",
                      role = "aut"),
               person(given = c("Richard", "K."),
                      family = "Crump",
                      role = "aut"),
               person(given = c("Max", "H."),
                      family = "Farrell",
                      role = "aut"),
               person(given = "Yingjie",
                      family = "Feng",
                      role = c("aut", "cre"),
                      email = "fengyingjiepku@gmail.com"))
as necessary.
Maintainer: ‘Chapman Siu <chpmn.siu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chapman",
                    family = "Siu",
                    role = c("aut", "cre"),
                    email = "chpmn.siu@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  read_audio.Rd: Wave
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bbassets.R’
Maintainer: ‘Roberto Serrano-Notivoli <roberto.serrano@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Roberto",
                    family = "Serrano-Notivoli",
                    role = c("aut", "cre"),
                    email = "roberto.serrano@unizar.es")
as necessary.
Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcelo",
                    family = "Ponce",
                    role = c("aut", "cre"),
                    email = "m.ponce@utoronto.ca")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Federico Calboli <f.calboli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessio",
                      family = "Boattini",
                      role = "aut"),
               person(given = c("Federico", "C.", "F.", "Calboli;", "Vincente", "Canto", "Cassola", "together", "with", "Martin", "Maechler", "authored", "the", "function"),
                      family = "mtx.exp.",
                      role = "aut"),
               person(given = "Federico",
                      family = "Calboli",
                      role = "cre",
                      email = "f.calboli@gmail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bilat.Rd: intersect.owin
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) calc_ed.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) calc_pi.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) calc_si.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) cluster_reg_exp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Lester L. Yuan <yuan.lester@epa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lester", "L."),
                    family = "Yuan",
                    role = c("aut", "cre"),
                    email = "yuan.lester@epa.gov")
as necessary.
Maintainer: ‘Zachary Colburn <zcolburn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zachary",
                    family = "Colburn",
                    role = c("aut", "cre"),
                    email = "zcolburn@gmail.com")
as necessary.
user system elapsed
bm_Tuning        5.349  0.079   6.062
BIOMOD_RangeSize 4.920  0.129   5.949
 OK
Maintainer: ‘Giorgio Valentini<valentini@di.unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giorgio",
                      family = "Valentini",
                      role = c("aut", "cre"),
                      email = "valentini@di.unimi.it"),
               person(given = c("Matteo", "Re", "--", "Universita'", "degli", "Studi", "di"),
                      family = "Milano",
                      role = "aut"))
as necessary.
user system elapsed
plot_enrichment_summaries 4.536  0.186   6.536
 OK
Maintainer: ‘Paula Saavedra-Nieves <paula.saavedra@usc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Saavedra-Nieves",
                      role = "aut"),
               person(given = "Paula",
                      family = "Saavedra-Nieves",
                      role = c("aut", "cre"),
                      email = "paula.saavedra@usc.es"))
as necessary.
user system elapsed
plot.scan 6.426  0.223   7.128
 OK
user system elapsed
hclu_hierarclust 4.397  0.095   5.056
 OK
Maintainer: ‘Piyal Karunarathne <piyalkarumail@yahoo.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marie Chabbert <marie.chabbert@univ-angers.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Julien", "Pele", "with", "Jean-Michel"),
                      family = "Becu",
                      role = "aut"),
               person(given = c("Rym", "Ben"),
                      family = "Boubaker",
                      role = "aut"),
               person(given = "Herve",
                      family = "Abdi",
                      role = "aut"),
               person(given = "Marie",
                      family = "Chabbert",
                      role = c("aut", "cre"),
                      email = "marie.chabbert@univ-angers.fr"))
as necessary.
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
   118 |   a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
       |                                                                                                                                                                              ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
   134 |   a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
       |                                                                                                                                                                              ^
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antonio Guerrero <jaguerrero@correo.uaa.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "J.A.",
                      family = "Guerrero",
                      role = "aut"),
               person(given = "J.E.",
                      family = "Macias-Diaz",
                      role = "aut"),
               person(given = "Antonio",
                      family = "Guerrero",
                      role = "cre",
                      email = "jaguerrero@correo.uaa.mx"))
as necessary.
Maintainer: ‘Stefan Michiels <stefan.michiels@gustaveroussy.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nils",
                      family = "Ternes",
                      role = "aut"),
               person(given = "Federico",
                      family = "Rotolo",
                      role = "aut"),
               person(given = "Stefan",
                      family = "Michiels",
                      role = c("aut", "cre"),
                      email = "stefan.michiels@gustaveroussy.fr"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘poisson.ci.R’
Maintainer: ‘Rob Knell <r.knell@qmul.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rob",
                    family = "Knell",
                    role = c("aut", "cre"),
                    email = "r.knell@qmul.ac.uk")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
'library' or 'require' calls not declared from:
  ‘GGally’ ‘Hmisc’ ‘MASS’ ‘OneTwoSamples’ ‘TeachingDemos’ ‘agricolae’
  ‘e1071’ ‘gdata’ ‘granova’ ‘granovaGG’ ‘gridExtra’ ‘hcci’ ‘lattice’
  ‘lmPerm’ ‘lmtest’ ‘multcomp’ ‘multcompView’ ‘plyr’ ‘qcc’ ‘reshape’
  ‘sandwich’ ‘scales’ ‘vcd’ ‘xlsx’
Maintainer: ‘Dr Rob Briers <r.briers@napier.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dr", "Rob"),
                    family = "Briers",
                    role = c("aut", "cre"),
                    email = "r.briers@napier.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tim Hulsen <thulsen@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Michael Seo <swj8874@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘PCAbiplot_Helper.R’ ‘TDAbiplot.R’ ‘TDAbiplot.Rd’
    ‘TDAbiplot_helper.R’ ‘insertAxDeets.R’ ‘insertDataTable.R’
Maintainer: ‘Ana Belen Nieto Librero <ananieto@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "Belen", "Nieto"),
                      family = "Librero",
                      role = c("aut", "cre"),
                      email = "ananieto@usal.es"),
               person(given = "Adelaide",
                      family = "Freitas",
                      role = "aut",
                      email = "Adelaide@ua.pt"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘AoD.Rd’ ‘AoD.biplot.Rd’ ‘CA.Rd’ ‘CA.biplot.Rd’ ‘CLPs.Rd’ ‘CVA.Rd’
    ‘CVA.biplot.Rd’ ‘PCA.Rd’ ‘PCA.biplot.Rd’ ‘PCO.Rd’ ‘PCO.biplot.Rd’
    ‘alpha.bags.Rd’ ‘axes.Rd’ ‘axes_coordinates.Rd’ ‘biplot.R’
    ‘biplot.Rd’ ‘classification.Rd’ ‘classify.Rd’ ‘density1D.Rd’
    ‘density2D.Rd’ ‘ellipses.Rd’ ‘fit.measures.Rd’ ‘interpolate.Rd’
    ‘legend.type.Rd’ ‘means.Rd’ ‘newaxes.Rd’ ‘newsamples.Rd’
    ‘plot.biplot.Rd’ ‘prediction.Rd’ ‘print.biplot.Rd’ ‘reflect.Rd’
    ‘regress.Rd’ ‘regress.biplot.Rd’ ‘rotate.Rd’ ‘samples.Rd’
    ‘summary.biplot.Rd’ ‘translate_axes.R’ ‘translate_axes.Rd’
user system elapsed
samples 3.962  0.067   5.535
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bisg.R’ ‘model_cat_dir.R’ ‘model_lm.R’ ‘stanmodels.R’
Maintainer: ‘Fraenzi Korner-Nievergelt <fraenzi.korner@vogelwarte.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fraenzi",
                      family = "Korner-Nievergelt",
                      role = c("aut", "cre"),
                      email = "fraenzi.korner@vogelwarte.ch"),
               person(given = "Rob",
                      family = "Robinson",
                      role = "aut"))
as necessary.
Maintainer: ‘Matthew A. Birk <matthewabirk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "A."),
                    family = "Birk",
                    role = c("aut", "cre"),
                    email = "matthewabirk@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bi_scale_color.Rd: geom_sf, scale_color_manual
  bi_scale_fill.Rd: geom_sf, scale_fill_manual
  bi_theme.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Winston Chang <winston@stdout.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Winston",
                    family = "Chang",
                    role = c("aut", "cre"),
                    email = "winston@stdout.org")
as necessary.

The Description field contains
  https://github.com/wch/bisectr for examples and test script templates.
Please enclose URLs in angle brackets (<...>).
No examples, no tests, no vignettes
Maintainer: ‘Mark Wappett <m.wappett@qub.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Wappett",
                    role = c("aut", "cre"),
                    email = "m.wappett@qub.ac.uk")
as necessary.
user system elapsed
moranbir.test 4.608  0.009   5.975
moranbi.mc    4.298  0.072   5.675
 OK
Maintainer: ‘Joshua Hewitt <joshua.hewitt@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "Hewitt",
                    role = c("aut", "cre"),
                    email = "joshua.hewitt@duke.edu")
as necessary.

The Description field contains
  posterior inference.  See Hewitt and Hoeting (2019) <arXiv:1904.07270>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Carine Legrand <c.legrand@dkfz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "C",
                      family = "Legrand",
                      role = "aut"),
               person(given = "Carine",
                      family = "Legrand",
                      role = "cre",
                      email = "c.legrand@dkfz.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  waic.cumhist.Rd: loo-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Mundus",
                      role = "aut"),
               person(given = "Christoph",
                      family = "Müssel",
                      role = "aut"),
               person(given = "Florian",
                      family = "Schmid",
                      role = "aut"),
               person(given = "Ludwig",
                      family = "Lausser",
                      role = "aut"),
               person(given = c("Tamara", "J."),
                      family = "Blätte",
                      role = "aut"),
               person(given = "Martin",
                      family = "Hopfensitz",
                      role = "aut"),
               person(given = c("Hans", "A."),
                      family = "Kestler",
                      role = "aut"),
               person(given = "Hans",
                      family = "Kestler",
                      role = "cre",
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
File ‘BiTrinA/libs/BiTrinA.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bits_to_raw.Rd’ ‘bitstream-ints.R’ ‘bitstream-uints-exp-golomb.R’
Maintainer: ‘Jia-Han Shih <tommy355097@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jia-Han",
                      family = "Shih",
                      role = c("aut", "cre"),
                      email = "tommy355097@gmail.com"),
               person(given = "Wei",
                      family = "Lee",
                      role = "aut"))
as necessary.
Maintainer: ‘Alessandro Barbiero <alessandro.barbiero@unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alessandro",
                    family = "Barbiero",
                    role = c("aut", "cre"),
                    email = "alessandro.barbiero@unimi.it")
as necessary.
Maintainer: ‘Ricardo Puziol de Oliveira <rpuziol.oliveira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ricardo", "Puziol"),
                      family = "de Oliveira",
                      role = c("aut", "cre"),
                      email = "rpuziol.oliveira@gmail.com"),
               person(given = c("Jorge", "Alberto"),
                      family = "Achcar",
                      role = "aut"))
as necessary.

The URL field contains the following bad parts:
  For
  more
  details
  see
  de
  Oliveira
  et.
  al
The URL field should be a list of URLs separated by commas or
whitespace.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Jo Hardin <jo.hardin@pomona.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jo",
                    family = "Hardin",
                    role = c("aut", "cre"),
                    email = "jo.hardin@pomona.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bizicount.Rd: DHARMa
  zic.reg.Rd: DHARMa
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
extract.bizicount 4.746  0.075   5.948
 OK
user system elapsed
BKTRRegressor              33.143  0.678  20.141
plot_hyperparams_dists     25.889  0.261  14.662
plot_hyperparams_traceplot 23.087  0.290  13.714
plot_beta_dists            19.267  0.287  11.160
plot_temporal_betas        18.651  0.128  11.115
plot_y_estimates           16.558  0.101   9.793
plot_covariates_beta_dists 15.010  0.054   9.035
 OK
Maintainer: ‘Jan Klaschka <klaschka@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jan",
                    family = "Klaschka",
                    role = c("aut", "cre"),
                    email = "klaschka@cs.cas.cz")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘binom.blaker.VHadj.limits.Rd’:
    http://dx.doi.org/10.1080/03610918.2014.911900
  File ‘binom.blaker.limits.Rd’:
    http://dx.doi.org/10.1080/03610918.2014.911900
  File ‘poisson.blaker.limits.Rd’:
    http://dx.doi.org/10.1080/03610918.2014.911900
Maintainer: ‘Bernhard Lehnert <bernhard.lehnert@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bernhard",
                    family = "Lehnert",
                    role = c("aut", "cre"),
                    email = "bernhard.lehnert@uni-greifswald.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘BlandAltmanLeh-package.Rd’:
    \keyword{ measurement precision, test-retest relia [TRUNCATED]
Maintainer: ‘Oswaldo Gressani <oswaldo_gressani@hotmail.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  coxlps.Rd: Surv, coxph
  curelps.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
gamlps 4.189  0.035   5.724
 OK
user system elapsed
blqr          7.105  0.007   8.072
ble_profile   6.363  0.206   7.593
expl_boundary 3.965  0.007   5.197
 OK
checkRd: (-1) posteriorFeasibility.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) sp500Returns.Rd:4: Escaped LaTeX specials: \&
Maintainer: ‘David J. Harris <DavHarris@UCDavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J."),
                    family = "Harris",
                    role = c("aut", "cre"),
                    email = "DavHarris@UCDavis.edu")
as necessary.

The Date field is not in ISO 8601 yyyy-mm-dd format.
user system elapsed
plot_Blend 3.436  0.071   5.233
 OK
checkRd: (-1) RLdata500.Rd:8: Lost braces
     8 | A data frame with five variables: \code{fname_c1},\code{lname_c1},  \code{by}, code{bm}, \code{bd}.
       |                                                                                    ^
checkRd: (-1) identity.RLdata500.Rd:15: Lost braces
    15 | format A vector that contains the code{id}
       |                                       ^
user system elapsed
appmamba 1.629  0.378   5.474
 OK
Maintainer: ‘Fraenzi Korner-Nievergelt <fraenzi.korner@oikostat.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fraenzi",
                      family = "Korner-Nievergelt",
                      role = c("aut", "cre"),
                      email = "fraenzi.korner@oikostat.ch"),
               person(given = "Tobias",
                      family = "Roth",
                      role = "aut"),
               person(given = "Stefanie",
                      family = "von Felten",
                      role = "aut"),
               person(given = "Jerome",
                      family = "Guelat",
                      role = "aut"),
               person(given = "Bettina",
                      family = "Almasi",
                      role = "aut"),
               person(given = "Pius",
                      family = "Korner-Nievergelt",
                      role = "aut"))
as necessary.
Maintainer: ‘S.Kovalchik <s.a.kovalchik@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "S.",
                      family = "Kovalchik",
                      role = "aut"),
               person(family = "S.Kovalchik",
                      role = "cre",
                      email = "s.a.kovalchik@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marie Perrot-Dockès <marie.perrocks@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "M.",
                      family = "Perrot-Dock\\`es",
                      role = "aut"),
               person(given = "C.",
                      family = "Lévy-Leduc",
                      role = "aut"),
               person(given = "Marie",
                      family = "Perrot-Dockès",
                      role = "cre",
                      email = "marie.perrocks@gmail.com"))
as necessary.

The Description field contains
  in the paper Perrot-Dockès et al. (2019) <arXiv:1806.10093>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marvin N. Wright <cran@wrig.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Roman",
                      family = "Hornung",
                      role = "aut"),
               person(given = c("Marvin", "N."),
                      family = "Wright",
                      role = c("aut", "cre"),
                      email = "cran@wrig.de"))
as necessary.
user system elapsed
plot.nppi 7.233  0.019   8.617
nppi      6.738  0.038  10.028
 OK
Maintainer: ‘Emanuele Cordano <emanuele.cordano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emanuele",
                    family = "Cordano",
                    role = c("aut", "cre"),
                    email = "emanuele.cordano@gmail.com")
as necessary.

The Description field contains
  (http://en.wikipedia.org/wiki/Block_matrix). The block matrix is here
Please enclose URLs in angle brackets (<...>).
user system elapsed
MBI 5.856  0.053   8.188
 OK
Maintainer: ‘Fabio Ashtar Telarico <telaricof@fdv.uni-lj.si>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jean-Benoist Leger <jbleger@hds.utc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Benoist",
                      family = "Leger",
                      role = c("aut", "cre"),
                      email = "jbleger@hds.utc.fr"),
               person(given = "Pierre",
                      family = "Barbillon",
                      role = "aut",
                      email = "pierre.barbillon@agroparistech.fr"),
               person(given = "Julien",
                      family = "Chiquet",
                      role = "aut",
                      email = "julien.chiquet@inrae.fr"))
as necessary.
Maintainer: ‘Greg Snow <538280@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Snow",
                    role = c("aut", "cre"),
                    email = "538280@gmail.com")
as necessary.
Maintainer: ‘Rodney Edmondson <rodney.edmondson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("R.", "N."),
                      family = "Edmondson.",
                      role = "aut"),
               person(given = "Rodney",
                      family = "Edmondson",
                      role = "cre",
                      email = "rodney.edmondson@gmail.com"))
as necessary.
checkRd: (-1) durban.Rd:16: Lost braces; missing escapes or markup?
    16 | This data set was obtained from the durban.rowcol {agridat} example in package 'agridat' 
       |                                                   ^
checkRd: (-1) fraction.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fraction.Rd:31-32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fraction.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assg2xBalance.R’
checkRd: (-1) estimate_density.Rd:25: Lost braces; missing escapes or markup?
    25 | evenly spaced points between \code{min} and {max}.
       |                                             ^
Maintainer: ‘Vahid Nassiri <vahid.nassiri@openanalytics.eu>’

The Description field contains
  <https://www.tandfonline.com/doi/full/10.1080/19466315.2019.1701546>).
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
Maintainer: ‘Daniel Brunner <daniel.brunner@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Brunner",
                      role = c("aut", "cre"),
                      email = "daniel.brunner@hhu.de",
                      comment = "aut"),
               person(given = "Constantin",
                      family = "Weiser",
                      role = "aut",
                      comment = "ctr"),
               person(given = "Andre",
                      family = "Romahn",
                      role = "aut",
                      comment = "ctr"))
as necessary.
Maintainer: ‘Furong Sun <furongs@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Furong",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "furongs@vt.edu"),
               person(given = "Zhonggai",
                      family = "Li",
                      role = "aut",
                      email = "zli@bostonbiomedical.com"))
as necessary.
Maintainer: ‘Christoph Ritschel <christoph.ritschel@met.fu-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christoph",
                    family = "Ritschel",
                    role = c("aut", "cre"),
                    email = "christoph.ritschel@met.fu-berlin.de")
as necessary.
Maintainer: ‘Paulino Perez Rodriguez <perpdgo@colpos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gustavo", "de", "los"),
                      family = "Campos",
                      role = "aut"),
               person(given = c("Paulino", "Perez"),
                      family = "Rodriguez,",
                      role = "aut"),
               person(given = c("Paulino", "Perez"),
                      family = "Rodriguez",
                      role = "cre",
                      email = "perpdgo@colpos.mx"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
'::' or ':::' imports not declared from:
  ‘abind’ ‘abjutils’ ‘bayesplot’ ‘devtools’ ‘dplyr’ ‘fs’ ‘furrr’
  ‘knitr’ ‘purrr’ ‘readr’ ‘stringr’ ‘tibble’ ‘tidyr’
'library' or 'require' calls not declared from:
  ‘future’ ‘tidyverse’
checkRd: (-1) bluebike.Rd:17: Lost braces
    17 | \item{\code{import_month_data}}\cr {Takes in numeric year/month values and imports data from \href{https://www.bluebikes.com/system-data}{Blue Bikes System Data} for the specified time}
       |                                    ^
checkRd: (-1) bluebike.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{\code{station_distance}}\cr {Returns stations with distance in ascending order given the user's current location}
       |                                   ^
checkRd: (-1) bluebike.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{\code{station_radius}}\cr {Plots the position of the stations within walking distance (500 m), and present the basic information about the stations via leaflet}
       |                                 ^
checkRd: (-1) bluebike.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{\code{trip_distance}}\cr {Computes the geographical distance between the start and end stations}
       |                                ^
checkRd: (-1) bluebike.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{\code{trip_history_sample}} \cr {A sample of 1000 trip data entries from February 2022}
       |                                       ^
checkRd: (-1) bluebike.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{\code{station_data}} \cr {A dataset that includes identification, position, and other basic information about bluebike stations}
       |                                ^
user system elapsed
test_extrapolation 4.072  0.067   5.960
estimate_oc_stock  3.699  0.059   5.576
 OK
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Turchin <mturchin20@uchicago.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘GetModelPriorMatrix.Rd’:
    https://doi.org/10.1371/journal.pone.0065245
  File ‘GlobalLipids2013.GWASsnps.Rd’:
    https://doi.org/10.1038/ng.2797
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bmem.Rd: sem
  power.bmem.Rd: model.syntax
  power.curve.Rd: model.syntax
  summary.power.Rd: lavaan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
bmem         0.346  0.024   9.065
summary.bmem 0.164  0.012   8.084
 OK
Maintainer: ‘Zhiyong Zhang <zhiyongzhang@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhiyongzhang@nd.edu"),
               person(given = "Lijuan",
                      family = "Wang",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bmem.Rd: sem
  bmem.bs.Rd: sem
  bmem.em.Rd: sem
  bmem.em.boot.Rd: sem
  bmem.em.jack.Rd: sem
  bmem.list.Rd: sem
  bmem.list.boot.Rd: sem
  bmem.list.jack.Rd: sem
  bmem.mi.Rd: sem
  bmem.mi.boot.Rd: sem
  bmem.mi.jack.Rd: sem
  bmem.pair.Rd: sem
  bmem.pair.boot.Rd: sem
  bmem.pair.jack.Rd: sem
  bmem.sobel.Rd: sem
  popPar.Rd: lavaan
  power.basic.Rd: model.syntax
  power.boot.Rd: model.syntax
  power.curve.Rd: model.syntax
  summary.power.Rd: lavaan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) dot-pred_array_to_df.Rd:20: Lost braces; missing escapes or markup?
    20 | Helper function for as.data.frame.{fitted, forecast}. Converts predictive array to data.frame.
       |                                   ^
Maintainer: ‘Reza Mohammadi <a.mohammadi@uva.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  summary.bmmfit.Rd: summary.brmsfit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Gregory Jefferis <jefferis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gregory",
                    family = "Jefferis",
                    role = c("aut", "cre"),
                    email = "jefferis@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Michele Scandola <michele.scandola@univr.it>’

The BugReports field in DESCRIPTION has
  https://github.com/michelescandola/bmscstan
which should likely be
  https://github.com/michelescandola/bmscstan/issues
instead.
checkRd: (-1) BMSC_pareto_k_table.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:57-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:60-63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:64-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:67-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Stefan Zeugner <stefan.zeugner@ec.europa.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Feldkircher",
                      role = "aut"),
               person(given = "Stefan",
                      family = "Zeugner",
                      role = c("aut", "cre"),
                      email = "stefan.zeugner@ec.europa.eu"),
               person(given = "Paul",
                      family = "Hofmarcher",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
calculate_validation_statistics 4.264  0.008   5.374
 OK
Maintainer: ‘Andrey Duvan Rincon Torres <adrincont@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Valeria", "Bejarano"),
                      family = "Salcedo",
                      role = "aut",
                      email = "vbejaranos@unal.edu.co"),
               person(given = c("Sergio", "Alejandro", "Calderon", "Villanueva", "Andrey", "Duvan", "Rincon", "Torres"),
                      family = "<adrincont@unal.edu.co>",
                      role = "aut",
                      email = "adrincont@unal.edu.co"),
               person(given = c("Andrey", "Duvan", "Rincon"),
                      family = "Torres",
                      role = "cre",
                      email = "adrincont@unal.edu.co"))
as necessary.
checkRd: (-1) autoplot.tsregime.Rd:20: Lost braces
    20 | Graph for the stochastic processes of the object \ dQuote {\ code {tsregime}} for: Output process and if they exist for: Threshold process and Covariates process. In the case that there are missing data, a red line is drawn at the indicated time.
       |                                                           ^
checkRd: (-1) autoplot.tsregime.Rd:20: Lost braces; missing escapes or markup?
    20 | Graph for the stochastic processes of the object \ dQuote {\ code {tsregime}} for: Output process and if they exist for: Threshold process and Covariates process. In the case that there are missing data, a red line is drawn at the indicated time.
       |                                                                   ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  autoplot.Rd: autolayer, ggplot, fortify
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
BMTfit.qme 4.292  0.016   5.035
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  network.run.Rd: jags.model
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘bnns.R’
Maintainer: ‘Marvin N. Wright <marv@wrig.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marvin", "N."),
                    family = "Wright",
                    role = c("aut", "cre"),
                    email = "marv@wrig.de")
as necessary.
Maintainer: ‘Elias Carvalho <ecacarva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elias",
                      family = "Carvalho",
                      role = c("aut", "cre"),
                      email = "ecacarva@gmail.com"),
               person(given = c("Joao", "R", "N"),
                      family = "Vissoci",
                      role = "aut"),
               person(given = "Luciano",
                      family = "Andrade",
                      role = "aut"),
               person(given = "Wagner",
                      family = "Machado",
                      role = "aut"),
               person(given = c("Emerson", "P"),
                      family = "Cabrera",
                      role = "aut"),
               person(given = c("Julio", "C"),
                      family = "Nievola",
                      role = "aut"))
as necessary.
checkRd: (-1) MvInv.Rd:23-35: Lost braces
    23 | function(eps, u = 0.5, alpha = 1, kappa = 1, gama = 1 / 2, N = 3001) {
       |                                                                      ^
checkRd: (-1) dt_.Rd:19-21: Lost braces
    19 | function(x, df, mean, sd) {
       |                           ^
Maintainer: ‘Riccardo Corradin <riccardo.corradin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Riccardo",
                      family = "Corradin",
                      role = c("aut", "cre"),
                      email = "riccardo.corradin@gmail.com"),
               person(given = "Antonio",
                      family = "Canale",
                      role = "ctb"),
               person(given = "Bernardo",
                      family = "Nipoti",
                      role = "ctb"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘David Alejandro Martell Juarez <alex91599@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Martell-Juarez",
                      role = "aut"),
               person(given = c("D.A.", "&"),
                      family = "Nieto-Barajas",
                      role = "aut"),
               person(family = "L.E.",
                      role = "aut"),
               person(given = c("David", "Alejandro", "Martell"),
                      family = "Juarez",
                      role = "cre",
                      email = "alex91599@gmail.com"))
as necessary.
Maintainer: ‘Joe Suzuki <j-suzuki@sigmath.es.osaka-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joe",
                      family = "Suzuki",
                      role = c("aut", "cre"),
                      email = "j-suzuki@sigmath.es.osaka-u.ac.jp"),
               person(given = "Jun",
                      family = "Kawahara",
                      role = "aut"))
as necessary.
Maintainer: ‘Georgios Papageorgiou <gpapageo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Georgios",
                    family = "Papageorgiou",
                    role = c("aut", "cre"),
                    email = "gpapageo@gmail.com")
as necessary.
checkRd: (-1) strength.viewer.Rd:148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:152: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Brian J. Smith <brian-j-smith@uiowa.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) boa.chain.collapse.Rd:20: Lost braces
    20 | \seealso{ code{\link{boa.chain.reset}}, code{\link{boa.chain.subset}} }
       |               ^
checkRd: (-1) boa.chain.collapse.Rd:20: Lost braces
    20 | \seealso{ code{\link{boa.chain.reset}}, code{\link{boa.chain.subset}} }
       |                                             ^
checkRd: (-1) refAnnots.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refAnnots.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:13-14: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gleidson Mendes Rebouças <gleidsonreboucas@uern.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gleidson", "Mendes"),
                      family = "Rebouças",
                      role = c("aut", "cre"),
                      email = "gleidsonreboucas@uern.br"),
               person(given = c("Thiago", "Renee"),
                      family = "Felipe",
                      role = "aut"))
as necessary.
Maintainer: ‘Mario Annau <mario.annau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("See", "AUTHORS"),
                      family = "file.",
                      role = "aut"),
               person(given = "Mario",
                      family = "Annau",
                      role = "cre",
                      email = "mario.annau@gmail.com"))
as necessary.
checkRd: (-1) Extractor.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:19: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ying Yuan <yyuan@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ying",
                      family = "Yuan",
                      role = c("aut", "cre"),
                      email = "yyuan@mdanderson.org"),
               person(given = "Suyu",
                      family = "Liu",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.R’ ‘utils.R’
user system elapsed
get_graph   0.021  0.004  10.042
get_stats   0.007  0.000  10.016
import_data 0.005  0.000  10.006
get_list    0.004  0.000  10.009
 OK
Maintainer: ‘James Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "James",
                    family = "Curran",
                    role = c("aut", "cre"),
                    email = "j.curran@auckland.ac.nz")
as necessary.
Maintainer: ‘Dongmei Li <dongmei_li@urmc.rochester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dongmei",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "dongmei_li@urmc.rochester.edu")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘BonEV-package.Rd’:
    \keyword{multiple testing procedure, false discove [TRUNCATED]
user system elapsed
plot.summary.horseshoe 5.145  0.288   5.784
 OK
Maintainer: ‘Levi McClenny <levimcclenny@tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Levi",
                      family = "McClenny",
                      role = c("aut", "cre"),
                      email = "levimcclenny@tamu.edu"),
               person(given = "Mahdi",
                      family = "Imani",
                      role = "aut"),
               person(given = "Ulisses",
                      family = "Braga-Neto",
                      role = "aut"))
as necessary.
Maintainer: ‘Steven L. Scott <steve.the.bayesian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Steven", "L.", "Scott", "is", "the", "sole"),
                      family = "author",
                      role = "aut"),
               person(given = c("creator", "of", "the", "BOOM", "project.", "Some", "code", "in", "the", "BOOM", "libraries", "has", "been", "modified", "from", "other", "open", "source", "projects.", "These", "include"),
                      family = "Cephes",
                      role = "aut",
                      comment = "obtained from Netlib, written by Stephen\n   L. Moshier"),
               person(family = "NEWUOA",
                      role = "aut",
                      comment = "M.J.D Powell, obtained from Powell's web site"),
               person(given = c("a", "modified", "version", "of", "the", "R", "math", "libraries.", "Original", "copyright", "notices", "have", "been", "maintained", "in", "all", "source", "files.", "In", "these"),
                      family = "cases",
                      role = "aut",
                      comment = "R core development team"),
               person(given = c("copyright", "claimed", "by", "Steven", "L.", "Scott", "is", "limited", "to", "modifications", "made", "to", "the", "original", "code.", "Google", "claims", "copyright", "for", "code", "written", "while", "Steven", "L.", "Scott", "was", "employed", "at", "Google", "from", "2008", "-"),
                      family = "2018",
                      role = "aut"),
               person(given = c("but", "BOOM", "is", "not", "an", "officially", "supported", "Google"),
                      family = "project.",
                      role = "aut"),
               person(given = c("Steven", "L."),
                      family = "Scott",
                      role = "cre",
                      email = "steve.the.bayesian@gmail.com"))
as necessary.
Maintainer: ‘Steven L. Scott <steve.the.bayesian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Steven", "L."),
                    family = "Scott",
                    role = c("aut", "cre"),
                    email = "steve.the.bayesian@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  nnet.Rd: MvnPrior
  suggest.burn.Rd: SuggestBurnLogLikelihood
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘BoomSpikeSlab/libs/BoomSpikeSlab.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Amol Pande <amoljpande@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amol",
                      family = "Pande",
                      role = c("aut", "cre"),
                      email = "amoljpande@gmail.com"),
               person(given = "Hemant",
                      family = "Ishwaran",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marc Henrion <mhenrion@mlw.mw>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gianmarco Vacca <gianmarco.vacca@unicatt.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gianmarco",
                      family = "Vacca",
                      role = c("aut", "cre"),
                      email = "gianmarco.vacca@unicatt.it"),
               person(given = "Stefano",
                      family = "Bertelli",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhengguo Xu <zhengguoxu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ari B. Friedman <abfriedman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Keith", "A."),
                      family = "Marill",
                      role = "aut"),
               person(given = c("Ari", "B."),
                      family = "Friedman",
                      role = c("aut", "cre"),
                      email = "abfriedman@gmail.com"))
as necessary.
Maintainer: ‘Samarendra Das <samarendra4849@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Samarendra",
                    family = "Das",
                    role = c("aut", "cre"),
                    email = "samarendra4849@gmail.com")
as necessary.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jae.", "H."),
                      family = "Kim",
                      role = "aut",
                      email = "jaekim8080@gmail.com"),
               person(given = c("Jae", "H."),
                      family = "Kim",
                      role = "cre",
                      email = "jaekim8080@gmail.com"))
as necessary.
user system elapsed
censboot 8.497  0.126  10.993
 OK
Maintainer: ‘Benjamin Baumgartner <benjamin@baumgrt.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Benjamin",
                      family = "Baumgartner",
                      role = c("aut", "cre"),
                      email = "benjamin@baumgrt.com"),
               person(given = "Riccardo",
                      family = "Gatto",
                      role = "aut",
                      email = "gatto@stat.unibe.ch"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Rizopoulos",
                    role = c("aut", "cre"),
                    email = "d.rizopoulos@erasmusmc.nl")
as necessary.
user system elapsed
boot.stepAIC 7.32  0.034   9.576
 OK
'library' or 'require' call not declared from: ‘survival’
Maintainer: ‘Scott Ritchie <sritchie73@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Qin", "Qin"),
                      family = "Huang",
                      role = "aut"),
               person(given = "Scott",
                      family = "Ritchie",
                      role = c("aut", "cre"),
                      email = "sritchie73@gmail.com"))
as necessary.
Maintainer: ‘Scott Kostyshak <scott.kostyshak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "S",
                      family = "original",
                      role = "aut"),
               person(given = "from",
                      family = "StatLib",
                      role = "aut"),
               person(given = c("by", "Rob", "Tibshirani.", "R", "port", "by", "Friedrich"),
                      family = "Leisch.",
                      role = "aut"),
               person(given = "Scott",
                      family = "Kostyshak",
                      role = "cre",
                      email = "scott.kostyshak@gmail.com"))
as necessary.
user system elapsed
boot.twostage 7.879  0.035   9.735
 OK
Maintainer: ‘Aaron Fisher <afishe27@alumni.jh.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Fisher",
                    role = c("aut", "cre"),
                    email = "afishe27@alumni.jh.edu")
as necessary.

The Description field contains
  in <doi:10.1080/01621459.2015.1062383> (see also <arXiv:1405.0922> ).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) bootSVD.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{Y}{initial data sample, which can be either a matrix or a \code{\link{ff}} matrix. \code{Y} can be either tall (\eqn{p} by \eqn{n}) or wide (\eqn{n} by \eqn{p}). If \code{Y} is entered and \code{V}, \code{d} and \code{U} (see definitions below) are not entered, then \code{bootSVD} will also compute the SVD of \code{Y}. In this case where the SVD is computed, \code{bootSVD} will assume that the larger dimension of \code{Y} is \eqn{p}, and the smaller dimension of code {Y} is \eqn{n} (i.e. \code{bootSVD} assumes that (\eqn{p>n}). This assumption can be overriden by manually entering \code{V}, \code{U} and \code{d}.\cr
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  As2Vs.Rd: ff
  bootSVD.Rd: ff
  fastSVD.Rd: ff
  ffmatrixmult.Rd: ff
  getMomentsAndMomentCI.Rd: ff
  reindexMatricesByK.Rd: ff
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Guy Nason <g.nason@imperial.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  graphoptBbd.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jeffrey A. Boatman <jeffrey.boatman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeffrey", "A."),
                      family = "Boatman",
                      role = c("aut", "cre"),
                      email = "jeffrey.boatman@gmail.com"),
               person(given = c("David", "M."),
                      family = "Vock",
                      role = "aut"),
               person(given = c("Joseph", "S."),
                      family = "Koopmeiners",
                      role = "aut"))
as necessary.
Maintainer: ‘Miron Bartosz Kursa <M.Kursa@icm.edu.pl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  getImpExtra.Rd: ranger
  getImpLegacyRf.Rd: ranger
  getImpRf.Rd: ranger
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
getImpLegacyRf 5.334  0.081    5.97
 OK
Maintainer: ‘Raphaël Clifford <clifford@cs.bris.ac.uk>’

The Description field contains
  (2017) <arXiv:1706.01260>. Also provides functions for generating
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pierre Lefeuvre <pierre.lefeuvre@cirad.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pierre",
                    family = "Lefeuvre",
                    role = c("aut", "cre"),
                    email = "pierre.lefeuvre@cirad.fr")
as necessary.
Maintainer: ‘Sen Tian <stian@stern.nyu.edu>’

The Description field contains
  for Subset Selection in Least Squares Regression", <arXiv:1911.10191>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
user system elapsed
mod_random_clust_sim 5.535  0.244      10
 OK
Maintainer: ‘Alexis Derumigny <a.f.f.derumigny@tudelft.nl>’

The Description field contains
  Girard, Guyonvarch (2021) <arXiv:2101.05780>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Emanuele Cordano <emanuele.cordano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emanuele",
                    family = "Cordano",
                    role = c("aut", "cre"),
                    email = "emanuele.cordano@gmail.com")
as necessary.
Maintainer: ‘Shinichiro Tomizono <cowares@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shinichiro",
                    family = "Tomizono",
                    role = c("aut", "cre"),
                    email = "cowares@gmail.com")
as necessary.
File ‘box/libs/box.so’:
  Found non-API calls to R: ‘ENVFLAGS’, ‘SET_ENVFLAGS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  print.xtable.Rd: xtable
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "P."),
                      family = "Fay",
                      role = c("aut", "cre"),
                      email = "mfay@niaid.nih.gov"),
               person(given = "Allyson",
                      family = "Mateja",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Davide Buttarazzi <davidebuttarazzi@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Davide",
                    family = "Buttarazzi",
                    role = c("aut", "cre"),
                    email = "davidebuttarazzi@outlook.com")
as necessary.
Maintainer: ‘Yaoxiang Li <yl814@georgetown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiang",
                      family = "Lu",
                      role = "aut",
                      email = "Xiang_Luaturmc.rochester.edu"),
               person(given = "Yaoxiang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "yl814atgeorgetown.edu"),
               person(given = "Tanzy",
                      family = "Love",
                      role = "aut",
                      email = "tanzy_loveaturmc.rochester.edu"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Jianzhao Gao and Xiaodan Fan <gaojz@nankai.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jianzhao",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "gaojz@nankai.edu.cn"),
               person(given = "Linghao",
                      family = "Shen",
                      role = "aut"),
               person(given = "Xiaodan",
                      family = "Fan",
                      role = "aut"))
as necessary.
checkRd: (-1) bp_rats.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp_sv.Rd:75: Lost braces; missing escapes or markup?
    75 | $$SV = sqrt(sum(x_{i+1} - x_i)^2/n-1)$$
       |                   ^
checkRd: (-1) bp_sv.Rd:80: Lost braces; missing escapes or markup?
    80 | $$SD = sqrt(sum(x_{i+1} - xbar)^2/n-1)$$
       |                   ^
checkRd: (-1) sv.Rd:78: Lost braces; missing escapes or markup?
    78 | $$SV = sqrt(sum(x_{i+1} - x_i)^2/n-1)$$
       |                   ^
checkRd: (-1) sv.Rd:82: Lost braces; missing escapes or markup?
    82 | $$SD = sqrt(sum(x_{i+1} - xbar)^2/n-1)$$
       |                   ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bp_report.Rd: grid.arrange
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
bp_scatter 3.769  0.062     5.4
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sim_dat_one_trial_exp_covar.R’ ‘sim_dat_one_trial_exp_nocovar.R’
Maintainer: ‘Laura D'Angelo <laura.dangelo@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Laura",
                    family = "D'Angelo",
                    role = c("aut", "cre"),
                    email = "laura.dangelo@live.com")
as necessary.
Maintainer: ‘Ville Satopää <ville.satopaa@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
makeBraidReport 4.688   0.07   5.337
 OK
user system elapsed
calcBraidConfInt 3.482  0.012   5.076
 OK
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘AddXMLInternal.R’ ‘BrowseSVG.R’ ‘MakeAccessibleSVGInternal.R’
    ‘RewriteSVG.R’ ‘ViewSVG.R’
user system elapsed
MakeAccessibleSVGMethod  4.4  0.128   5.542
 OK
user system elapsed
population.est 4.973  0.018   7.345
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_global.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘BranchGLM.R’ ‘BranchGLMTable.R’ ‘VariableImportance.R’
    ‘VariableImportance.boot.R’ ‘summaryBranchGLMVS.R’
Maintainer: ‘Camilo Jose Torres-Jimenez <cjtorresj@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Camilo", "Jose"),
                    family = "Torres-Jimenez",
                    role = c("aut", "cre"),
                    email = "cjtorresj@unal.edu.co")
as necessary.
Maintainer: ‘Benjamin Schlegel <kontakt@benjaminschlegel.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Benjamin",
                      family = "Schlegel",
                      role = c("aut", "cre"),
                      email = "kontakt@benjaminschlegel.ch"),
               person(given = "Marco",
                      family = "Steenbergen",
                      role = "aut"))
as necessary.
Maintainer: ‘Mike Lee <random.deviate@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mike",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "random.deviate@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_sinesp_data.R’ ‘get_sinesp_vde_data.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Amy D Willis <adwillis@uw.edu>’

The Description field contains
  <doi:10.1111/rssc.12206>, and Willis (2016) <arXiv:1604.02598>, as well
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Priyadarshana W.J.R.M. <mjayawardana@swin.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Priyadarshana",
                      family = "W.J.R.M.",
                      role = c("aut", "cre"),
                      email = "mjayawardana@swin.edu.au"),
               person(given = "Georgy",
                      family = "Sofronov",
                      role = "aut"))
as necessary.

File 'R/breakpoint-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Santiago I. Hurtado <santih@carina.fcaglp.unlp.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Santiago", "I."),
                    family = "Hurtado",
                    role = c("cre", "aut"),
                    email = "santih@carina.fcaglp.unlp.edu.ar")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Adam J King <king@cpp.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J"),
                    family = "King",
                    role = c("aut", "cre"),
                    email = "king@cpp.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘read_any_breathtest.R’
user system elapsed
stan_fit 3.725  0.262   5.108
 OK
Maintainer: ‘Christian Graul <christian.graul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Graul",
                      role = c("aut", "cre"),
                      email = "christian.graul@gmail.com"),
               person(given = "Carsten",
                      family = "Poppinga",
                      role = "aut"))
as necessary.
Maintainer: ‘Andrew McKenzie <amckenz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrew",
                      family = "McKenzie",
                      role = c("aut", "cre"),
                      email = "amckenz@gmail.com"),
               person(given = "Minghui",
                      family = "Wang",
                      role = "aut"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  brnb.Rd: negbin
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) brglm.Rd:173: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:174: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:175-176: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:177-178: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:179-180: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:181-182: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:183-184: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:54-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) printHands.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) printHands.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) printHands.Rd:42: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Aurora Torrente <etorrent@est-econ.uc3m.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Javier", "Albert"),
                      family = "Smet",
                      role = "aut",
                      email = "javas@kth.se"),
               person(given = c("Aurora", "Torrente.", "Alice"),
                      family = "Parodi",
                      role = "aut",
                      email = "etorrent@est-econ.uc3m.es"),
               person(given = "Mirco",
                      family = "Patriarca",
                      role = "aut"),
               person(given = "Laura",
                      family = "Sangalli",
                      role = "aut"),
               person(given = "Piercesare",
                      family = "Secchi",
                      role = "aut"),
               person(given = "Simone",
                      family = "Vantini",
                      role = "aut"),
               person(given = "Valeria",
                      family = "Vitelli",
                      role = "aut"),
               person(given = "as",
                      family = "contributors.",
                      role = "aut"),
               person(given = "Aurora",
                      family = "Torrente",
                      role = "cre",
                      email = "etorrent@est-econ.uc3m.es"))
as necessary.
Maintainer: ‘Mauricio Sadinle <msadinle@uw.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BRL.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
  File ‘bipartiteGibbs.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
  File ‘compareRecords.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
  File ‘linkRecords.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
  File ‘twoFiles.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
Maintainer: ‘Mark Clements <mark.clements@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Linbo",
                      family = "Wang",
                      role = "aut"),
               person(given = "Mark",
                      family = "Clements",
                      role = c("aut", "cre"),
                      email = "mark.clements@ki.se"),
               person(given = "Thomas",
                      family = "Richardson",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Specified C++11: please drop specification unless essential
checkRd: (-1) assertall.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) assertall.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) assertall.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) assertall.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brmsmargins.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) brmsmargins.Rd:130: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) brmsmargins.Rd:131: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) brmsmargins.Rd:132: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) builders.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:55: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  builders.Rd: make_standata, as_draws_df
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘brm_archetype_average_cells.Rd’ ‘brm_archetype_average_effects.Rd’
    ‘brm_archetype_cells.Rd’ ‘brm_archetype_effects.Rd’
    ‘brm_archetype_successive_cells.Rd’
    ‘brm_archetype_successive_effects.Rd’ ‘brm_formula.Rd’
    ‘brm_prior_archetype.Rd’ ‘brm_prior_label.Rd’ ‘brm_prior_template.Rd’
    ‘brm_recenter_nuisance.Rd’ ‘summary.brms_mmrm_archetype.Rd’
    ‘utils_archetype.R’
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  createBarPrior.Rd: fitCyclopsModel
  createFastBarPrior.Rd: fitCyclopsModel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Author field differs from that derived from Authors@R
  Author:    ‘Ben Bolker [aut, cre] (<https://orcid.org/0000-0002-2127-0443>), David Robinson [aut], Dieter Menne [ctb], Jonah Gabry [ctb], Paul Buerkner [ctb], Christopher Hua [ctb], William Petry [ctb] (<https://orcid.org/0000-0002-5230-5987>), Joshua Wiley [ctb] (<https://orcid.org/0000-0002-0271-6702>), Patrick Kennedy [ctb], Eduard Szöcs [ctb] (<https://orcid.org/0000-0001-5376-1194>, BASF SE), Indrajeet Patil [ctb], Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>), Bill Denney [ctb], Cory Brunson [ctb], Joe Wasserman [ctb] (<https://orcid.org/0000-0002-9705-1853>), Alexey Stukalov [ctb], Matthieu Bruneaux [ctb]’
  Authors@R: ‘Ben Bolker [aut, cre] (ORCID: <https://orcid.org/0000-0002-2127-0443>), David Robinson [aut], Dieter Menne [ctb], Jonah Gabry [ctb], Paul Buerkner [ctb], Christopher Hua [ctb], William Petry [ctb] (ORCID: <https://orcid.org/0000-0002-5230-5987>), Joshua Wiley [ctb] (ORCID: <https://orcid.org/0000-0002-0271-6702>), Patrick Kennedy [ctb], Eduard Szöcs [ctb] (ORCID: <https://orcid.org/0000-0001-5376-1194>, sponsor: BASF SE), Indrajeet Patil [ctb], Vincent Arel-Bundock [ctb] (ORCID: <https://orcid.org/0000-0003-2042-7063>), Bill Denney [ctb], Cory Brunson [ctb], Joe Wasserman [ctb] (ORCID: <https://orcid.org/0000-0002-9705-1853>), Alexey Stukalov [ctb], Matthieu Bruneaux [ctb]’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘glmm_tidiers.R’ ‘rstanarm_tidiers.Rd’
user system elapsed
mcmc_tidiers 4.354  0.198    5.56
 OK
Maintainer: ‘Yan Zhao <yanzhao3@illinois.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Smruti",
                      family = "Padhy",
                      role = "aut"),
               person(given = "Rob",
                      family = "Kooper",
                      role = "aut"),
               person(given = "Yan",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "yanzhao3@illinois.edu"))
as necessary.
Maintainer: ‘Rahim Alhamzawi  (University of Al-Qadisiyah) <rahim.alhamzawi@qu.edu.iq>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rahim",
                    family = "Alhamzawi",
                    role = c("aut", "cre"),
                    email = "rahim.alhamzawi@qu.edu.iq")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘census2021.Rd’
Maintainer: ‘Joshua Ray Tanzer <jtanzer@lifespan.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joshua", "Ray"),
                    family = "Tanzer",
                    role = c("aut", "cre"),
                    email = "jtanzer@lifespan.org")
as necessary.
user system elapsed
bcor 3.017  0.804   5.218
 OK
Maintainer: ‘Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frank",
                    family = "Schaarschmidt",
                    role = c("aut", "cre"),
                    email = "schaarschmidt@biostat.uni-hannover.de")
as necessary.
Maintainer: ‘Ian Jonsen <ian.jonsen@mq.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marco Giuliano <mgiuliano.mail@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Giuliano",
                    role = c("aut", "cre"),
                    email = "mgiuliano.mail@gmail.com")
as necessary.
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

The Description field contains
  <arXiv:2308.10150>. This work was supported by the National Research
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
Maintainer: ‘Paola Rebora <paola.rebora@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paola", "Rebora,Agus"),
                      family = "Salim",
                      role = "aut"),
               person(given = "Marie",
                      family = "Reilly",
                      role = "aut"),
               person(given = "Paola",
                      family = "Rebora",
                      role = "cre",
                      email = "paola.rebora@unimib.it"))
as necessary.
Maintainer: ‘Peter Solymos <psolymos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Solymos",
                    role = c("aut", "cre"),
                    email = "psolymos@gmail.com",
                    comment = c(ORCID = "0000-0001-7337-1740"))
as necessary.
Maintainer: ‘Leah F. South <l1.south@qut.edu.au>’

The Description field contains
  (2018) <arXiv:1809.05800>) is more robust to non-normal summary
  statistics. BSLmisspec (Frazier et al. 2019 <arXiv:1904.04551>)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ernesto Barrios <ebarrios@itam.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ernesto", "Barrios", "based", "on", "Daniel", "Meyer's"),
                      family = "code.",
                      role = "aut"),
               person(given = "Ernesto",
                      family = "Barrios",
                      role = "cre",
                      email = "ebarrios@itam.mx"))
as necessary.
Maintainer: ‘Yanchao Liu <yanchaoliu@wayne.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yanchao",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "yanchaoliu@wayne.edu")
as necessary.

The Description field contains
  Yanchao Liu (2022) <arXiv:2205.15263> for technical details. Source
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) bscontrol.Rd:39: Lost braces; missing escapes or markup?
    39 | \item{opt.solver}{a character string in the set {'enum', 'enum_c', 'gurobi', 'cplex', 'lpSolve', 'greedy'} indicating the optimization solver to be used in the program. The choice of 'cplex' requires the package \code{cplexAPI}, 'gurobi' requires the package \code{gurobi}, and 'lpSolve' requires the package \code{lpSolve}. These solver options are only available in the full version at \url{https://github.com/profyliu/bsnsing/}. The default (and the best) is 'enum_c'.}
       |                                                 ^
checkRd: (-1) bscontrol.Rd:45: Lost braces; missing escapes or markup?
    45 | \item{opt.model}{a character string in the set {'gini','error'} indicating the optimization model to solve in the program. The default is 'gini'. The 'error' option is not available in the current version.}
       |                                                ^
Maintainer: ‘Jorge Sicacha-Parada <jasicachap@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorge",
                      family = "Sicacha-Parada",
                      role = c("aut", "cre"),
                      email = "jasicachap@unal.edu.co"),
               person(given = "Edilberto",
                      family = "Cepeda-Cuervo",
                      role = "aut"))
as necessary.
user system elapsed
hetero_general 4.294  0.428   5.802
 OK
Specified C++11: please drop specification unless essential
user system elapsed
sbmspcov       4.995  0.306   7.368
summary.bspcov 4.812  0.288   5.795
 OK
Maintainer: ‘Christian Roever <christian.roever@med.uni-goettingen.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Matthew C. Edwards <matt.edwards@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matthew", "C."),
                      family = "Edwards",
                      role = c("aut", "cre"),
                      email = "matt.edwards@auckland.ac.nz"),
               person(given = "Renate",
                      family = "Meyer",
                      role = "aut"),
               person(given = "Nelson",
                      family = "Christensen",
                      role = "aut"))
as necessary.

The Description field contains
  and Computing (2018). <doi.org/10.1007/s11222-017-9796-9>.
Please write DOIs as <doi:prefix/suffix>.
Maintainer: ‘Deborah Burr <burr@stat.ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Deborah",
                    family = "Burr",
                    role = c("aut", "cre"),
                    email = "burr@stat.ufl.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
run_mcmc 3.832  0.004   5.414
 OK
Maintainer: ‘Rocio Paola Maehara <rp.maeharaa@up.edu.pe>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Benites"),
                      family = "Sanchez",
                      role = c("cre", "aut"),
                      email = "lbenitess@pucp.edu.pe"),
               person(given = c("Rocio", "Paola"),
                      family = "Maehara",
                      role = c("cre", "aut"),
                      email = "rp.maeharaa@up.edu.pe"),
               person(given = c("Paulo", "Jos<a9>", "Alejandro", "Aybar", "Flores"),
                      family = "<a.aybarf@alum.up.edu.pe>",
                      role = "ctb",
                      email = "a.aybarf@alum.up.edu.pe"))
as necessary.
Maintainer: ‘Sixing Hao <s.hao3@lse.ac.uk>’

The Description field contains
  (2022)<arXiv:2201.02023>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Phillip Murray <phillip.murray18@imperial.ac.uk>’

The Description field contains
  Pakkannen (2017) <arXiv:1507.03004v4>, as well as functions to fit BSS
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Maintainer: ‘Zhu Wang <zwang145@uthsc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Steven L. Scott <steve.the.bayesian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Steven", "L."),
                    family = "Scott",
                    role = c("aut", "cre"),
                    email = "steve.the.bayesian@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  add.dynamic.regression.Rd: SdPrior
  add.monthly.annual.cycle.Rd: zoo
  bsts.Rd: zoo
  descriptive-plots.Rd: zoo, yearmon
  mbsts.Rd: SpikeSlabPrior
  plot.bsts.mixed.Rd: TimeSeriesBoxplot
  to.posixt.Rd: yearmon
  wide.to.long.Rd: zoo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘bsts/libs/bsts.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Zuguang Gu <z.gu@dkfz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zuguang",
                    family = "Gu",
                    role = c("aut", "cre"),
                    email = "z.gu@dkfz.de")
as necessary.
user system elapsed
bsvars-package                                   5.245  0.026   6.903
summary.PosteriorBSVARSV                         4.847  0.012   5.662
compute_conditional_sd.PosteriorBSVARSV          4.808  0.019   6.675
estimate.PosteriorBSVARSV                        4.814  0.007   6.065
compute_fitted_values.PosteriorBSVARSV           4.813  0.004   5.506
compute_impulse_responses.PosteriorBSVARSV       4.813  0.004   5.146
compute_variance_decompositions.PosteriorBSVARSV 4.815  0.000   5.664
estimate.BSVARSV                                 4.808  0.000   5.319
compute_structural_shocks.PosteriorBSVARSV       4.803  0.004   5.588
 OK
Maintainer: ‘Adam Bekhit <imbei@med-imbei.uni-saarland.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Bekhit",
                      role = c("aut", "cre"),
                      email = "imbei@med-imbei.uni-saarland.de"),
               person(given = "Jakob",
                      family = "Schöpe",
                      role = "aut"),
               person(given = "Stefan",
                      family = "Wagenpfeil",
                      role = "aut"))
as necessary.
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
checkRd: (-1) terms.BTM.Rd:23-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) terms.BTM.Rd:26-32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) terms.data.frame.Rd:25-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) terms.data.frame.Rd:32-38: Lost braces in \itemize; \value handles \item{}{} directly
user system elapsed
BTM 10.806  0.453   8.234
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BT.Rd: rpart, rpart.control
  BT_Call.Rd: rpart.control
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Taiane Schaedler Prass <taianeprass@gmail.com>’

The Description field contains
  <doi:10.1111/sjos.12439> and Pumi et al. (2022) <arXiv:2211.02097>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) pnbd.mcmc.DrawParameters.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pnbd.mcmc.DrawParameters.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  abe.mcmc.DrawParameters.Rd: mcmc.list
  pggg.mcmc.DrawParameters.Rd: mcmc.list
  pnbd.mcmc.DrawParameters.Rd: mcmc.list
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
dc.PlotLogLikelihoodContour 3.65  0.043   5.074
 OK
checkRd: (-1) bubbleHMLegends.Rd:42: Lost braces; missing escapes or markup?
    42 | function. If {sizeBreaks} vector is supplied then this will be ignored and
       |              ^
checkRd: (-1) bubbleHeatmap.Rd:96: Lost braces; missing escapes or markup?
    96 | function. If {sizeBreaks} vector is supplied then this will be ignored and
       |              ^
checkRd: (-1) multiPlotInput.Rd:117: Lost braces; missing escapes or markup?
   117 | \code{unitBase}. This will be supplied to pretty function. If {sizeBreaks} is
       |                                                               ^
Maintainer: ‘Ken Kelley <kkelley@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Samantha", "F."),
                      family = "Anderson",
                      role = "aut",
                      email = "samantha.f.anderson@asu.edu"),
               person(given = "Ken",
                      family = "Kelley",
                      role = c("aut", "cre"),
                      email = "kkelley@nd.edu"))
as necessary.
Maintainer: ‘Jiwoong Kim <jwboys26@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiwoong",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jwboys26atgmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Zhu Wang <zwang145@uthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhu",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "https://orcid.org/0000-0002-0773-0052"),
               person(family = "others",
                      role = "aut",
                      comment = "see COPYRIGHTS"))
as necessary.
Maintainer: ‘Joseph Rigdon <jrigdon@wakehealth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Rigdon",
                    role = c("aut", "cre"),
                    email = "jrigdon@wakehealth.edu")
as necessary.
Maintainer: ‘Marlene Marchena <marchenamarlene@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marlene",
                    family = "Marchena",
                    role = c("aut", "cre"),
                    email = "marchenamarlene@gmail.com")
as necessary.

The Description field contains
  <arXiv:1009.3977>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Lerato E Magosi <magosil86@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  brkpt.Rd: glm.nb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) kink_estimator.Rd:60: Escaped LaTeX specials: \$
Maintainer: ‘Philipp Ottolinger <philipp@ottolinger.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philipp",
                    family = "Ottolinger",
                    role = c("aut", "cre"),
                    email = "philipp@ottolinger.de")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  lifecycles.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Steven Malevich <sbmalev@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_data_from_bursa.R’ ‘list_data_names.R’
Maintainer: ‘Pat Burns <patrick@burns-stat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Burns",
                      family = "Statistics",
                      role = "aut"),
               person(given = "Pat",
                      family = "Burns",
                      role = "cre",
                      email = "patrick@burns-stat.com"))
as necessary.
Maintainer: ‘Pat Burns <patrick@burns-stat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pat",
                    family = "Burns",
                    role = c("aut", "cre"),
                    email = "patrick@burns-stat.com")
as necessary.
Maintainer: ‘Gnaneshwar G <gnaneshwar441@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gnaneshwar",
                    family = "G",
                    role = c("aut", "cre"),
                    email = "gnaneshwar441@gmail.com")
as necessary.
checkRd: (-1) depreciation-class.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:46-47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:46-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:38-39: Lost braces in \itemize; meant \describe ?
user system elapsed
axe-ipred 5.721  0.254   7.014
axe-ksvm  4.583  0.126   5.337
 OK
Maintainer: ‘Yi Zhao <zhaoyi1026@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yi", "Zhao", "Brian", "Caffo", "<bcaffo@gmail.com>", "Joshua", "Ewen"),
                      family = "<ewen@kennedykrieger.org>",
                      role = "aut",
                      email = "ewen@kennedykrieger.org"),
               person(given = "Yi",
                      family = "Zhao",
                      role = "cre",
                      email = "zhaoyi1026@gmail.com"))
as necessary.

The Description field contains
  <arXiv:1912.13084> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Fabian Krueger <Fabian.Krueger83@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabian",
                    family = "Krueger",
                    role = c("aut", "cre"),
                    email = "fabian.krueger83@gmail.com")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Franz X. Mohr [aut, cre] (0009-0003-8890-7781)’
  Authors@R: ‘Franz X. Mohr [aut, cre] (ORCiD: 0009-0003-8890-7781)’
Maintainer: ‘Katharine M. Mullen <katharine.mullen@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Katharine", "M."),
                    family = "Mullen",
                    role = c("aut", "cre"),
                    email = "katharine.mullen@stat.ucla.edu")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Amir Nikooienejad <amir.nikooienejad@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amir",
                      family = "Nikooienejad",
                      role = c("aut", "cre"),
                      email = "amir.nikooienejad@gmail.com"),
               person(given = c("Valen", "E."),
                      family = "Johnson",
                      role = "ths"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Seung Jun Shin <sjshin@korea.ac.kr>’

The Description field contains
  detection proposed by Shin et al. <arXiv:1812.10107>. The backward
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
'data(package=)' call not declared from: ‘NAM’
Maintainer: ‘Carlos Biagolini-Jr.<c.biagolini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Biagolini-Jr.",
                    role = c("aut", "cre"),
                    email = "c.biagolini@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Hunyong Cho <hunyong.cho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hunyong",
                      family = "Cho",
                      role = c("aut", "cre"),
                      email = "hunyong.cho@gmail.com"),
               person(given = "Chuwen",
                      family = "Liu",
                      role = "aut"),
               person(given = "Jinyoung",
                      family = "Park",
                      role = "aut"),
               person(given = "Di",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Sill",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Hielscher",
                      role = "aut"),
               person(given = "Manuela",
                      family = "Zucknick",
                      role = "aut"),
               person(given = "Natalia",
                      family = "Becker.",
                      role = "aut"),
               person(given = "Frederic",
                      family = "Bertrand",
                      role = "cre",
                      email = "frederic.bertrand@utt.fr"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  balancedFolds.Rd: EPSGO
  coef.intsearch.Rd: EPSGO
  plot.summary.int.Rd: EPSGO
  stabpath.Rd: glmnet
  summary.intsearch.Rd: EPSGO
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Thomas Wieland <thomas.wieland.kit@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wieland",
                    role = c("aut", "cre"),
                    email = "thomas.wieland.kit@googlemail.com")
as necessary.
Maintainer: ‘Mitchell Lyons <mitchell.lyons@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘calculate_clustering_metrics.Rd’:
    \keyword{matrix,}
    \keyword{metrics,}
Maintainer: ‘Gokmen Altay <altayscience@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gokmen",
                      family = "Altay",
                      role = c("aut", "cre"),
                      email = "altayscience@gmail.com"),
               person(given = "Frank",
                      family = "Emmert-Streib",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
sigtestMTC 5.345   0.12   6.883
 OK
Maintainer: ‘Rosaria Lombardo <rosaria.lombardo@unicampania.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rosaria",
                      family = "Lombardo",
                      role = c("aut", "cre"),
                      email = "rosaria.lombardo@unicampania.it"),
               person(given = c("Eric", "J"),
                      family = "Beh",
                      role = "aut"),
               person(given = "Michel",
                      family = "van de Velden",
                      role = "aut"))
as necessary.
Maintainer: ‘Trevor Ringrose <t.j.ringrose@cranfield.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Trevor",
                    family = "Ringrose",
                    role = c("aut", "cre"),
                    email = "t.j.ringrose@cranfield.ac.uk")
as necessary.
Maintainer: ‘Junyao Jiang <jiangjunyao789@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junyao",
                    family = "Jiang",
                    role = c("aut", "cre"),
                    email = "jiangjunyao789@163.com")
as necessary.
Maintainer: ‘Quinn N. Lathrop <quinn.lathrop@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Quinn", "N."),
                    family = "Lathrop",
                    role = c("aut", "cre"),
                    email = "quinn.lathrop@gmail.com")
as necessary.
Maintainer: ‘Alex J. Cannon <alex.cannon@canada.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "J."),
                    family = "Cannon",
                    role = c("aut", "cre"),
                    email = "alex.cannon@canada.ca")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
CADF_to_migration_model 4.562  0.326   5.106
 OK
Maintainer: ‘Claudio Lupi <lupi@unimol.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Claudio",
                    family = "Lupi",
                    role = c("aut", "cre"),
                    email = "lupi@unimol.it")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
CoUMAP.plot  5.078  0.017   5.981
CoUMAP       4.745  0.015   5.421
CAESAR.CTDEP 3.735  0.465   5.076
 OK
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Jeffrey",
                      family = "Horner",
                      role = "aut",
                      email = "jeff.horner@vanderbilt.edu"))
as necessary.
possible bashism in configure.ac line 36 (should be 'b = a'):
  if test "xx$CAIRO_LIBS" == "xx"; then
  possible bashism in configure.ac line 129 (should be 'b = a'):
  if test "xx${CAIRO_LIBS}" == "xx"; then
  possible bashism in configure.ac line 130 (should be 'b = a'):
     if test $uses_ats == "yes"; then
  possible bashism in configure.ac line 214 (test -a/-o):
       if test -z "${FCI}" -a -e "${pre}/include/fontconfig/fontconfig.h"; then
  possible bashism in configure.ac line 218 (test -a/-o):
       if test -z "${FTI}" -a -e "${pre}/include/freetype2/freetype/freetype.h"; then
  possible bashism in configure.ac line 227 (test -a/-o):
     if test -z "${FCI}" -a -z "${FTI}"; then
File ‘Cairo/libs/Cairo.so’:
  Found non-API calls to R: ‘EXTPTR_PTR’, ‘Rf_GetOption’, ‘Rf_gsetVar’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Felipe Campelo <fcampelo@gmail.com>’

The Description field contains
  <arxiv:1908.01720>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alan Gu <alan.on.ca@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Gu",
                    role = c("aut", "cre"),
                    email = "alan.on.ca@gmail.com")
as necessary.
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘Stephen Froehlich <stephen.froehlich@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Froehlich",
                    role = c("aut", "cre"),
                    email = "stephen.froehlich@gmail.com")
as necessary.
checkRd: (-1) calcUnique.Rd:24: Lost braces
    24 | functions, and often the /code{cut()} function are relatively slow when working with tens of millions of rows or more.
       |                               ^
Maintainer: ‘John Ford <JoRuFo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephanie",
                      family = "Lane",
                      role = c("aut", "cre")),
               person(given = "John",
                      family = "Ford",
                      role = c("aut", "cre"),
                      email = "jorufo@gmail.com"),
               person(given = "Clark",
                      family = "Jeffries",
                      role = "aut"),
               person(given = "Diana",
                      family = "Perkins",
                      role = "aut"))
as necessary.
Maintainer: ‘Anoop Shah <anoop@doctors.org.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘internal_calib_aj.R’ ‘internal_calib_pv.R’
    ‘internal_extract_ids_states.R’ ‘plot.calib_mlr.Rd’ ‘plot_calib.R’
    ‘weights.R’
user system elapsed
plot.calib_mlr 4.515   0.16   6.867
 OK
Maintainer: ‘Chih-Li Sung <iamdfchile@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chih-Li",
                    family = "Sung",
                    role = c("aut", "cre"),
                    email = "iamdfchile@gmail.com")
as necessary.

The Description field contains
  <arXiv:1806.01453>. This calibration method is particularly useful when
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jan Graffelman <jan.graffelman@upc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jan",
                    family = "Graffelman",
                    role = c("aut", "cre"),
                    email = "jan.graffelman@upc.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Oyvind Langsrud <oyl@ssb.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Øyvind",
                      family = "Langsrud",
                      role = "aut"),
               person(given = "Oyvind",
                      family = "Langsrud",
                      role = "cre",
                      email = "oyl@ssb.no"))
as necessary.
Maintainer: ‘Marius Puke <marius.puke@uni-hohenheim.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:2203.04065>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) calibration_bands.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{y}{response variable (in {0,1}).}
       |                                ^
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dominik Heider <heiderd@mathematik.uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johanna",
                      family = "Schwarz",
                      role = "aut"),
               person(given = "Dominik",
                      family = "Heider",
                      role = c("aut", "cre"),
                      email = "heiderd@mathematik.uni-marburg.de"))
as necessary.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Recording.Rd:112: Lost braces; missing escapes or markup?
   112 | Stop recording images with {camcorder}.
       |                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BuildGeneSets.Rd: edgeR, org.Hs.eg.db, org.Mm.eg.db
  CAMML.Rd: vamForSeurat
  ChIMP.Rd: vamForSeurat
  GetGeneSets.Rd: org.Hs.eg.db, org.Mm.eg.db
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
BuildGeneSets 4.477  0.206   6.420
CAMML         4.297  0.123   5.284
 OK
Maintainer: ‘Lukas Lundstrom <lukas.rokka@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Author field differs from that derived from Authors@R
  Author:    ‘Peter Desmet [aut, cre] (<https://orcid.org/0000-0002-8442-8025>, Research Institute for Nature and Forest (INBO)), Sanne Govaert [aut] (<https://orcid.org/0000-0002-8939-1305>, Research Institute for Nature and Forest (INBO)), Pieter Huybrechts [aut] (<https://orcid.org/0000-0002-6658-6062>, Research Institute for Nature and Forest (INBO)), Damiano Oldoni [aut] (<https://orcid.org/0000-0003-3445-7562>, Research Institute for Nature and Forest (INBO)), Research Institute for Nature and Forest (INBO) [cph] (https://www.vlaanderen.be/inbo/en-gb/), LifeWatch Belgium [fnd] (https://lifewatch.be)’
  Authors@R: ‘Peter Desmet [aut, cre] (ORCID: <https://orcid.org/0000-0002-8442-8025>, affiliation: Research Institute for Nature and Forest (INBO)), Sanne Govaert [aut] (ORCID: <https://orcid.org/0000-0002-8939-1305>, affiliation: Research Institute for Nature and Forest (INBO)), Pieter Huybrechts [aut] (ORCID: <https://orcid.org/0000-0002-6658-6062>, affiliation: Research Institute for Nature and Forest (INBO)), Damiano Oldoni [aut] (ORCID: <https://orcid.org/0000-0003-3445-7562>, affiliation: Research Institute for Nature and Forest (INBO)), Research Institute for Nature and Forest (INBO) [cph] (https://www.vlaanderen.be/inbo/en-gb/), LifeWatch Belgium [fnd] (https://lifewatch.be)’
user system elapsed
check_camtrapdp 1.133  0.228   8.372
read_camtrapdp  0.667  0.121   5.199
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_coef-commOccu-method.Rd: fit
  plot_effects-commOccu-method.Rd: fit
  predict-commOccu-method.Rd: fit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘wds.R’
Maintainer: ‘Audrey Q. Fu <audreyqyfu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Audrey", "Qiuyan"),
                      family = "Fu",
                      role = "aut"),
               person(given = "Xiaoyue",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Audrey", "Q."),
                      family = "Fu",
                      role = "cre",
                      email = "audreyqyfu@gmail.com"))
as necessary.
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
CorrectBatch   5.324  0.086   6.341
CorrectBatches 4.572  0.055   5.305
 OK
Maintainer: ‘Yuchao Jiang <yuchaoj@email.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuchao",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "yuchaoj@email.unc.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘MDA231_tree.pdf’
user system elapsed
CLES 5.125  0.326   6.998
 OK
checkRd: (-1) macrocaic.Rd:31: Lost braces; missing escapes or markup?
    31 |      {RRD = ln(N_1/N_2)}
       |      ^
checkRd: (-1) macrocaic.Rd:34: Lost braces; missing escapes or markup?
    34 |      {PDI = (N_1/(N_1 + N_2))-0.5}
       |      ^
checkRd: (-1) pd.calc.Rd:33: Lost braces
    33 |   \item{Length of tip branch lengths (TIPS)}{Length of tip branch lengths (TIPS)}{Unlike UEH, this measure does not use the unique paths to each tips on the \strong{subtree} and instead gives the sum of the unique branches leading to the tips on the \strong{complete tree}.}
       |                                                                                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  comparative.data.Rd: reorder.phylo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John T. Buynak <jbuynak94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "T."),
                    family = "Buynak",
                    role = c("aut", "cre"),
                    email = "jbuynak94@gmail.com")
as necessary.
Maintainer: ‘Joel Barnes <j@barnzilla.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Oswaldo Santos Baquero <baquero@usp.br>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CalculateGlobalSens.Rd: sensRange
  CalculateLocalSens.Rd: sensFun, sensRange
  DesignSurvey.Rd: svydesign
  PlotLocalSens.Rd: element_text
  SetRanges.Rd: sensRange
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘deSolve’
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    captr .1.4
    captr .1.3
    captr .1.2
Maintainer: ‘Vincent Brault <vincent.brault@agroparistech.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sylvain",
                      family = "Arlot",
                      role = "aut"),
               person(given = "Vincent",
                      family = "Brault",
                      role = c("aut", "cre"),
                      email = "vincent.brault@agroparistech.fr"),
               person(given = "Jean-Patrick",
                      family = "Baudry",
                      role = "aut"),
               person(given = "Cathy",
                      family = "Maugis",
                      role = "aut"),
               person(given = "Bertrand",
                      family = "Michel",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘do_la.Rd’ ‘linalg.Rd’ ‘scale_matrix.Rd’ ‘solve.caracas_symbol.Rd’
    ‘solve_lin.Rd’
Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Duncan",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "duncan.lee@glasgow.ac.uk")
as necessary.
Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Duncan",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "duncan.lee@glasgow.ac.uk")
as necessary.
Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duncan",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "duncan.lee@glasgow.ac.uk"),
               person(given = "Alastair",
                      family = "Rushworth",
                      role = "aut"),
               person(given = "Gary",
                      family = "Napier",
                      role = "aut"),
               person(given = "William",
                      family = "Pettersson",
                      role = "aut"))
as necessary.
Maintainer: ‘Fraenzi Korner-Nievergelt <fraenzi.korner@oikostat.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fraenzi",
                      family = "Korner-Nievergelt",
                      role = c("aut", "cre"),
                      email = "fraenzi.korner@oikostat.ch"),
               person(given = "Ivo",
                      family = "Niermann",
                      role = "aut"),
               person(given = "Oliver",
                      family = "Behr",
                      role = "aut"),
               person(given = c("Matthew", "A."),
                      family = "Etterson",
                      role = "aut"),
               person(given = "Robert",
                      family = "Brinkmann",
                      role = "aut"),
               person(given = "Pius",
                      family = "Korner",
                      role = "aut"),
               person(given = "Barbara",
                      family = "Hellriegel",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Roth",
                      role = "aut"),
               person(given = c("Manuela", "M.", "P."),
                      family = "Huso",
                      role = "aut"),
               person(given = "Dan",
                      family = "Dalthorp",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  persistence.prob.Rd: coxph, survreg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Oleg Nenadic <onenadi@uni-goettingen.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) plot.ca.rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) States.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) fitweibull.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitweibull.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitweibull.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘cosinor-constructor.R’
user system elapsed
ggcosinor 4.678  0.259   6.685
 OK
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Verena",
                      family = "Zuber",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"),
               person(given = "Henghsiu",
                      family = "Tsai",
                      role = "aut"),
               person(given = "Kisung",
                      family = "You",
                      role = "aut"))
as necessary.
checkRd: (-1) build_for_cran.Rd:13: Lost braces
    13 | The exit status code{R CMD build}, invisibly.
       |                     ^
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Ziyi Li <zli16@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ziyi",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "zli16@mdanderson.org")
as necessary.
user system elapsed
influence-mixed-models 5.798  0.096   6.516
 OK
Maintainer: ‘Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Welchowski",
                    role = c("aut", "cre"),
                    email = "welchow@imbie.meb.uni-bonn.de")
as necessary.

The Description field contains
  <arXiv:1802.08178>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
File ‘cartographer/libs/cartographer.so’:
  Found non-API call to R: ‘PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘cartographr.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  dotDensityLayer.Rd: st_sample
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
getPngLayer 5.403  0.221   6.283
 OK
Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yaofang Hu <yaofangh@smu.edu>’

The Description field contains
  Wang (2022) <arXiv:2306.15616>.  In addition to CASCORE, this package
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
claimFitting-methods 5.093  0.192   6.144
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘CBRBase.R’ ‘RFModel.R’ ‘RegressionModel.R’ ‘distance.R’
    ‘generate_grid.R’ ‘utils.R’
Maintainer: ‘Rich Nielsen <rnielsen@mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rich",
                    family = "Nielsen",
                    role = c("aut", "cre"),
                    email = "rnielsen@mit.edu")
as necessary.
Specified C++11: please drop specification unless essential
user system elapsed
ComputeCI 3.619  0.233    5.98
 OK
user system elapsed
calc_scags 4.330  0.469   7.221
top_scags  3.447  0.010   5.415
 OK
Maintainer: ‘Yuqing Pan <yuqing.pan@stat.fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuqing",
                      family = "Pan",
                      role = c("aut", "cre"),
                      email = "yuqing.pan@stat.fsu.edu"),
               person(given = "Qing",
                      family = "Mai",
                      role = "aut",
                      email = "mai@stat.fsu.edu"),
               person(given = "Xin",
                      family = "Zhang",
                      role = "aut",
                      email = "henry@stat.fsu.edu"))
as necessary.

The Description field contains
  (2018) <arXiv:1805.04421>. The low-dimensional covariates and the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Masami Saga <msaga@mtb.biglobe.ne.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("The", "Institute", "of", "Statistical"),
                      family = "Mathematics",
                      role = "aut"),
               person(given = "Masami",
                      family = "Saga",
                      role = "cre",
                      email = "msaga@mtb.biglobe.ne.jp"))
as necessary.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alan",
                      family = "Agesti",
                      role = "aut",
                      email = "aa@stat.ufl.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gunther",
                      family = "Schauberger",
                      role = c("aut", "cre"),
                      email = "gunther.schauberger@tum.de"),
               person(given = "Gerhard",
                      family = "Tutz",
                      role = "aut"))
as necessary.
Maintainer: ‘Ruben H. Roa-Ureta <ruben.roa.ureta@mail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ruben", "H."),
                    family = "Roa-Ureta",
                    role = c("aut", "cre"),
                    email = "ruben.roa.ureta@mail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juraj Szitas <szitas.juraj13@gmail.com>’

The Description field contains
  Hadad, Athey, Wager (2019) <arXiv:1908.09874>, particularly their mean,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘nl zhang <setseed2016@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "nl",
                    family = "zhang",
                    role = c("aut", "cre"),
                    email = "setseed2016@gmail.com")
as necessary.
Maintainer: ‘Nick Williams <ntwilliams.personal@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Williams",
                    role = c("aut", "cre"),
                    email = "ntwilliams.personal@gmail.com")
as necessary.
Maintainer: ‘Adrien Taudiere <adrien.taudiere@tutanota.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) catmapdata.Rd:9-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:14-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:19-20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:20-21: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘catmapdata.fixed.effects.plot.pdf’ ‘catmapdata.funnel.plot.pdf’
  ‘catmapdata.output.txt’ ‘catmapdata.random.effects.plot.pdf’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  catpredi.Rd: mgcv
  catpredi.survival.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Fernando Tusell <fernando.tusell@ehu.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ported", "to", "R", "by", "Ted"),
                      family = "Harding",
                      role = "aut"),
               person(given = c("Fernando", "Tusell.", "Original", "by", "Joseph", "L."),
                      family = "Schafer.",
                      role = "aut",
                      email = "jls@stat.psu.edu"),
               person(given = "Fernando",
                      family = "Tusell",
                      role = "cre",
                      email = "fernando.tusell@ehu.es"))
as necessary.
Specified C++14: please drop specification unless essential
Maintainer: ‘Cheng Hua <chuabest@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Magis",
                      role = "aut",
                      comment = "U Liege, Belgium"),
               person(given = "Gilles",
                      family = "Raiche",
                      role = "aut",
                      comment = "UQAM, Canada"),
               person(given = c("Juan", "Ramon"),
                      family = "Barrada",
                      role = "aut",
                      comment = "U Zaragoza, Spain"),
               person(given = "Cheng",
                      family = "Hua",
                      role = "cre",
                      email = "chuabest@gmail.com"))
as necessary.
user system elapsed
trial_ocs 4.749  0.063    7.73
 OK
Specified C++11: please drop specification unless essential
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CATT.Rd’:
    \keyword{Cochran-Armitage; Trend Test}
user system elapsed
hdi.ancestralCauchy 5.616  0.026    8.23
 OK
Maintainer: ‘Suyeon Kang <skang062@ucr.edu>’

The Description field contains
  <arXiv:2109.06940>. This package allows researchers to use the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) tpcExample.Rd:30: Escaped LaTeX specials: \&
Maintainer: ‘Kevin Quinn <kmq@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Glynn",
                      role = "aut",
                      email = "adam.glynn@emory.edu"),
               person(given = "Kevin",
                      family = "Quinn",
                      role = c("aut", "cre"),
                      email = "kmq@umich.edu"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Naeem Khoshnevis [aut, cre] (<https://orcid.org/0000-0003-4315-1426>, Kempner), Xiao Wu [aut] (<https://orcid.org/0000-0002-4884-657X>, CUMC), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’
  Authors@R: ‘Naeem Khoshnevis [aut, cre] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: Kempner), Xiao Wu [aut] (ORCID: <https://orcid.org/0000-0002-4884-657X>, AFFILIATION: CUMC), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’
Maintainer: ‘Alain Hauser <alhauser@google.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kay", "H."),
                      family = "Brodersen",
                      role = "aut",
                      email = "kbrodersen@google.com"),
               person(given = "Alain",
                      family = "Hauser",
                      role = c("aut", "cre"),
                      email = "alhauser@google.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Fiammetta Menchetti <fiammetta.menchetti@gmail.com>’

The Description field contains
  (MBSTS) as described in Menchetti & Bojinov (2020) <arXiv:2006.12269>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) as.mbsts.Rd:71: Lost braces; missing escapes or markup?
    71 |   \item{states.samples}{(\code{niter}- \code{burn}) draws from p(alpha_t | Y_{1:T}).}
       |                                                                              ^
checkRd: (-1) mcmc.Rd:61: Lost braces; missing escapes or markup?
    61 |   \item{states.samples}{(\code{niter}- \code{burn}) draws from p(alpha_t | Y_{1:T}).}
       |                                                                              ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘causal-model.R’ ‘check-linearity.R’ ‘deprecated.R’
    ‘translation-modules.R’ ‘utils.R’
Maintainer: ‘Eric Dunipace <edunipace@mail.harvard.edu>’

The Description field contains
  Dunipace, Eric (2021) <arXiv:2109.01991>.  The package will build the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cotOOP.R’ ‘utils.R’
Maintainer: ‘Matthew Blackwell <mblackwell@gov.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Blackwell",
                    role = c("aut", "cre"),
                    email = "mblackwell@gov.harvard.edu.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  causalSLSE.Rd: vcovHC.default
  extract-causalslse-method.Rd: extract, texreg
  extract-slseFit-method.Rd: extract, texreg
  predict.Rd: vcovHC.default
  summary.Rd: vcovHC.default
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Giovanna Capizzi <giovanna.capizzi@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giovanna",
                      family = "Capizzi",
                      role = c("aut", "cre"),
                      email = "giovanna.capizzi@unipd.it"),
               person(given = "Guido",
                      family = "Masarotto",
                      role = "aut"))
as necessary.
Maintainer: ‘Rosaria Lombardo  <rosaria.lombardo@unicampania.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rosaria",
                      family = "Lombardo",
                      role = c("aut", "cre"),
                      email = "rosaria.lombardo@unicampania.it"),
               person(given = c("Eric", "J"),
                      family = "Beh",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Zhongheng Zhang <zh_zhang1984@zju.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhongheng",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zh_zhang1984@zju.edu.cn"),
               person(given = c("Sir", "Run", "Run", "Shaw"),
                      family = "hospital",
                      role = "aut"),
               person(given = c("Zhejiang", "university", "school", "of"),
                      family = "medicine",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CBCgrps2.6-package.Rd’:
    \keyword{ bivariate analysis; statisitcal descript [TRUNCATED]
Maintainer: ‘Dan Dalthorp <ddalthorp@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dan",
                    family = "Dalthorp",
                    role = c("aut", "cre"),
                    email = "ddalthorp@protonmail.com")
as necessary.

The Description field contains
  (2013) <arXiv:1303.5990>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Watson <david.s.watson11@gmail.com>’

The Description field contains
  details, see Watson & Silva (2022) <arXiv:2205.05715>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
bipartite 4.124  0.378   6.436
cbl       3.699  0.012   5.844
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cbs_add_statcode_column.Rd’ ‘cbs_add_unit_column.Rd’
    ‘cbs_get_maps.Rd’ ‘cbs_get_sf.R’ ‘cbs_get_sf.Rd’
    ‘cbs_join_sf_with_data.Rd’
Maintainer: ‘Shouri Hu <e0054325@u.nus.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hock", "Peng"),
                      family = "Chan",
                      role = "aut"),
               person(given = "Shouri",
                      family = "Hu",
                      role = c("aut", "cre"),
                      email = "e0054325@u.nus.edu"))
as necessary.

The Description field contains
  and Shouri Hu (2018) <arXiv:1805.11793>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
create_CircularArrow 4.402  0.106   5.171
 OK
Maintainer: ‘Sébastien Déjean <sebastien.dejean@math.univ-toulouse.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ignacio",
                      family = "González",
                      role = "aut"),
               person(given = "Sébastien",
                      family = "Déjean",
                      role = c("aut", "cre"),
                      email = "sebastien.dejean@math.univ-toulouse.fr"))
as necessary.
Maintainer: ‘David J. Marchette <dmarchette@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J."),
                    family = "Marchette",
                    role = c("aut", "cre"),
                    email = "dmarchette@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Rcpp_CONEC-class.Rd: C++Object-class
  Rcpp_CPS-class.Rd: C++Object-class
  Rcpp_CTRL-class.Rd: C++Object-class
  Rcpp_DCP-class.Rd: C++Object-class
  Rcpp_DLP-class.Rd: C++Object-class
  Rcpp_DNL-class.Rd: C++Object-class
  Rcpp_DQP-class.Rd: C++Object-class
  Rcpp_PDV-class.Rd: C++Object-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Solt Kovacs <ccda@caesar.elte.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Solt",
                      family = "Kovacs",
                      role = c("aut", "cre"),
                      email = "ccda@caesar.elte.hu"),
               person(given = "Jozsef",
                      family = "Kovacs",
                      role = "aut"),
               person(given = "Peter",
                      family = "Tanos",
                      role = "aut"))
as necessary.
Maintainer: ‘Andreas Anastasiou <anastasiou.andreas@ucy.ac.cy>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
getCCM 4.272  0.012   5.408
 OK
Maintainer: ‘Michael B. Sohn <msohn@mail.med.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "B."),
                    family = "Sohn",
                    role = c("aut", "cre"),
                    email = "msohn@mail.med.upenn.edu")
as necessary.
Maintainer: ‘Garrett M. Dancik <dancikg@easternct.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Garrett", "M."),
                      family = "Dancik",
                      role = c("aut", "cre"),
                      email = "dancikg@easternct.edu"),
               person(given = "Yuanbin",
                      family = "Ru",
                      role = "aut"))
as necessary.
Maintainer: ‘Uwe Menzel <uwemenzel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Uwe",
                    family = "Menzel",
                    role = c("aut", "cre"),
                    email = "uwemenzel@gmail.com")
as necessary.
Maintainer: ‘W.John Braun <john.braun@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "W.J.",
                      family = "Braun",
                      role = "aut"),
               person(given = "W.John",
                      family = "Braun",
                      role = "cre",
                      email = "john.braun@ubc.ca"))
as necessary.
user system elapsed
CCSRfind 1.121   3.07   5.959
 OK
Maintainer: ‘Abhibhav Sharma <mail.abhibhav@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abhibhav",
                    family = "Sharma",
                    role = c("aut", "cre"),
                    email = "mail.abhibhav@gmail.com")
as necessary.
checkRd: (-1) CUR.Rd:25: Lost braces; missing escapes or markup?
    25 | The number of low-dimension of C (J1 < {N,M}).
       |                                        ^
checkRd: (-1) CUR.Rd:29: Lost braces; missing escapes or markup?
    29 | The number of low-dimension of R (J2 < {N,M}).
       |                                        ^
checkRd: (-1) CX.Rd:23: Lost braces; missing escapes or markup?
    23 | The number of low-dimension (J < {N,M}).
       |                                  ^
Maintainer: ‘Yonghui Dong <yonghui.dong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yonghui",
                    family = "Dong",
                    role = c("aut", "cre"),
                    email = "yonghui.dong@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
user system elapsed
cdcat 0.641  0.021    6.88
 OK
Maintainer: ‘Mathieu Vrac <mathieu.vrac@lsce.ipsl.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mathieu",
                      family = "Vrac",
                      role = c("aut", "cre"),
                      email = "mathieu.vrac@lsce.ipsl.fr"),
               person(given = "Paul-Antoine",
                      family = "Michelangeli",
                      role = "aut",
                      email = "pam@climpact.com"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Ang Yu [aut, cre, cph] (<https://ang-yu.github.io/>, <https://orcid.org/0000-0002-1828-0165>)’
  Authors@R: ‘Ang Yu [aut, cre, cph] (website: <https://ang-yu.github.io/>, ORCID: <https://orcid.org/0000-0002-1828-0165>)’
Maintainer: ‘Alicja Wolny-Dominiak <woali@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Adamic",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "woali@ue.katowice.pl"))
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Thomas",
                      family = "Kiefer",
                      role = "aut"),
               person(given = c("Ann", "Cathrice"),
                      family = "George",
                      role = "aut"),
               person(given = "Ali",
                      family = "Uenlue",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) data.dtmr.Rd:57: Lost braces; missing escapes or markup?
    57 | \code{RU}: {Referent units}
       |            ^
checkRd: (-1) data.dtmr.Rd:59: Lost braces; missing escapes or markup?
    59 | \code{PI}: {Partitioning and iterating attribute}
       |            ^
checkRd: (-1) data.dtmr.Rd:61: Lost braces; missing escapes or markup?
    61 | \code{APP}: {Appropriateness attribute}
       |             ^
checkRd: (-1) data.dtmr.Rd:63: Lost braces; missing escapes or markup?
    63 | \code{MC}: {Multiplicative Comparison attribute}
       |            ^
Maintainer: ‘Philippe Massicotte <pm@bios.au.dk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("aut", "cre"),
                      email = "normmatloff@gmail.com"),
               person(given = "Vincent",
                      family = "Yang",
                      role = "aut",
                      email = "vinyang@ucdavis.edu"),
               person(given = "Harrison",
                      family = "Nguyen",
                      role = "aut",
                      email = "hhnguy@ucdavis.edu"))
as necessary.
Maintainer: ‘Emanuele Bevacqua <emanuele.bevacqua@uni-graz.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘atp_plot.Rd’ ‘bioscope_plot.Rd’ ‘energetics_lme_summary.Rd’
    ‘energetics_ols_summary.Rd’ ‘fit_lme.Rd’ ‘get_energetics.Rd’
    ‘get_energetics_summary.Rd’ ‘get_rate_summary.Rd’
    ‘make_bioscope_plot.Rd’ ‘normalize.Rd’ ‘partition_data.Rd’
    ‘pipelines.r’ ‘rate_plot.R’ ‘rate_plot.Rd’ ‘rates_lme_summary.Rd’
    ‘read_data.Rd’
Found the following files/directories:
  ‘figure01ceg.pdf’ ‘figure02ceg.pdf’ ‘staged.tree.graph.pdf’
  ‘stratified-event-tree-plot.pdf’
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Molnar",
                    role = c("aut", "cre"),
                    email = "dmolnar100@icloud.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ca_functions.r’ ‘plot.cellular_automata.Rd’
Maintainer: ‘Katharine M. Mullen <katharine.mullen@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Katharine", "M."),
                      family = "Mullen",
                      role = c("aut", "cre"),
                      email = "katharine.mullen@stat.ucla.edu"),
               person(given = "Michael",
                      family = "Halter",
                      role = "aut"),
               person(given = "John",
                      family = "Lu",
                      role = "aut"),
               person(given = "Nathan",
                      family = "Dodder",
                      role = "aut"))
as necessary.
Maintainer: ‘Jakob Raymaekers <jakob.raymaekers@kuleuven.be>’

The Description field contains
  (open access), Raymaekers and Rousseeuw (2022) <arXiv:2207.13493> (open
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andre Fujita <andrefujita@usp.br>’

The Description field contains
  structures (Relvas C. & Fujita A., (2020) <arXiv:2004.02333>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
CenBAR 8.791  0.012  11.253
 OK
Maintainer: ‘Sy Han (Steven) Chiou <schiou@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jing",
                      family = "Qian",
                      role = "aut"),
               person(given = c("Sy", "Han"),
                      family = "Chiou",
                      role = "aut",
                      comment = "Steven"),
               person(given = c("Sy", "Han"),
                      family = "Chiou",
                      role = "cre",
                      email = "schiou@hsph.harvard.edu",
                      comment = "Steven"))
as necessary.
Maintainer: ‘Yan Li <YanLi_stats@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yan",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "yanli_stats@hotmail.com"),
               person(given = "Yang",
                      family = "Li",
                      role = "aut"),
               person(given = "Yichen",
                      family = "Qin",
                      role = "aut"),
               person(given = "Jun",
                      family = "yan",
                      role = "aut"))
as necessary.
Unexported objects imported by ':::' calls:
  ‘copula:::dCdu’ ‘copula:::fitCopStart’
  See the note in ?`:::` about the use of this operator.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Alejandro Ordonez <ordonezjosealejandro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Ordonez",
                      role = c("aut", "cre"),
                      email = "ordonezjosealejandro@gmail.com"),
               person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut"))
as necessary.
checkRd: (-1) call_api_once.Rd:36: Lost braces
    36 | A code{data.frame} with the requested variables at the requested
       |       ^
user system elapsed
geom_cnt 4.572  0.225    5.76
 OK
Maintainer: ‘Mahdi Jalili <m_jalili@farabi.tums.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mahdi",
                    family = "Jalili",
                    role = c("aut", "cre"),
                    email = "m_jalili@farabi.tums.ac.ir")
as necessary.
checkRd: (-1) centroid.Rd:22: Lost braces; missing escapes or markup?
    22 | Centroid value C_{cen}(v) for node v defined as:
       |                  ^
checkRd: (-1) clusterrank.Rd:23: Lost braces; missing escapes or markup?
    23 | where the term f(c_{i}) accounts for the effect of i's local clustering and the term '+1' results from the contribution of \eqn{j}{j} itself. \cr
       |                    ^
Maintainer: ‘Duy Nghia Pham <nghiapham@yandex.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Benoit Liquet <b.liquet@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tim",
                      family = "Benham",
                      role = "aut"),
               person(given = "Qibin",
                      family = "Duan",
                      role = "aut"),
               person(given = c("Dirk", "P."),
                      family = "Kroese",
                      role = "aut"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = c("aut", "cre"),
                      email = "b.liquet@uq.edu.au"))
as necessary.
Maintainer: ‘Mohit Dayal <mohitdayal2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mohit",
                    family = "Dayal",
                    role = c("aut", "cre"),
                    email = "mohitdayal2000@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ce-hg.R’ ‘ce-mean.R’ ‘ce-prepdata.R’ ‘ce-quantiles.R’ ‘ce-uccs.R’
    ‘get-survey-files.R’ ‘read-expd.R’ ‘read-fmld.R’ ‘read-fmli.R’
    ‘read-mtbi.R’ ‘recode-ce-variables.R’
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
checkRd: (-1) cequre.Rd:31: Lost braces; missing escapes or markup?
    31 |   {epsi}^{# regression coefficients} times the initial value,
       |   ^
checkRd: (-1) cequre.Rd:31: Lost braces; missing escapes or markup?
    31 |   {epsi}^{# regression coefficients} times the initial value,
       |          ^
user system elapsed
calc_c_closure 5.818  0.206   7.214
 OK
Specified C++11: please drop specification unless essential
Maintainer: ‘Mengying Zhang <zhangmengying@hrbmu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mengying", "Zhang,Yongsheng", "Li,Juan", "Xu*,Xia"),
                      family = "Li*",
                      role = "aut"),
               person(given = "Mengying",
                      family = "Zhang",
                      role = "cre",
                      email = "zhangmengying@hrbmu.edu.cn"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘extraDoseLines.Rd’ ‘extraDoseNames.Rd’ ‘fixedEffect.Rd’
    ‘randomEffect.Rd’
Maintainer: ‘Diogo Ferrari <diogoferrari@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘James Balamuta <balamut2@illinois.edu>’

Found the following (possibly) invalid file URI:
  URI: RColorBrewer
    From: README.md

The Description field contains
  (2015) "Good Colour Maps: How to Design Them" <arXiv:1509.03700> at the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"),
               person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"))
as necessary.
checkRd: (-1) cfc.tbasis.Rd:23: Lost braces
    23 | Assuming one-dimensional \code{p1} and \code{p2} for clarity, the algorithm calculates cumulative incidence function for cuase 1 using a recursive formula: \code{ci1[n+1] = ci1[n] + dci1[n]}, where \code{dci1[n] = 0.5*(p2[n] + p2[n+1])*(p1[n] - p1[n+1])}. The increment in cumulative incidence function for cause 2 is similarly calculated, \code{dci2[n] = 0.5*(p1[n] + p1[n+1])*(p2[n] - p2[n+1])}. These equations guarantee that \code{dci1[n] + dci2[n] = p1[n]*p2[n] - p1[n+1]*p2[n+1]}. Event-free probability is simply calculated as code{efp[n] = p1[n]*p2[n]}. Taken together, this numerical integration ensures that \code{efp[n+1] - efp[n] + dci1[n] + dci2[n] = 0}.
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ^
user system elapsed
fbpRaster 4.306      0   5.263
 OK
Maintainer: ‘Santtu Tikka <santtuth@gmail.com>’

The Description field contains
  Pearl, J. (2007, 2008) <arXiv:1206.5294>,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yi Zhao <zhaoyi1026@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "zhaoyi1026@gmail.com"),
               person(given = "Xi",
                      family = "Luo",
                      role = "aut",
                      email = "xi.rossi.luo@gmail.com"),
               person(given = "Martin",
                      family = "Lindquist",
                      role = "aut",
                      email = "mal2053@gmail.com"),
               person(given = "Brian",
                      family = "Caffo",
                      role = "aut",
                      email = "bcaffo@gmail.com"))
as necessary.

File 'R/cfma-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.

The Description field contains
  to Functional Magnetic Resonance Imaging Data, <arXiv:1805.06923> for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
lateonset.simu 6.078  0.008   8.553
CFO.oc         4.350  0.120   5.231
 OK
Maintainer: ‘Erick Verleye <erve3705@colorado.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  boot.cgaim.Rd: doParallel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ahmadou Dicko <mail@ahmadoudicko.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "file",
                      family = "inst/AUTHORS",
                      role = "aut"),
               person(given = "Ahmadou",
                      family = "Dicko",
                      role = "cre",
                      email = "mail@ahmadoudicko.com"))
as necessary.
Maintainer: ‘Yu-chia Chang <curare7177@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yuan-chin", "I."),
                      family = "Chang",
                      role = "aut"),
               person(given = "Yu-chia",
                      family = "Chang",
                      role = c("aut", "cre"),
                      email = "curare7177@gmail.com"),
               person(given = "Ling-wan",
                      family = "Chen",
                      role = "aut"))
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘LI Wu <liwu@staff.shu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "LI",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "liwu@staff.shu.edu.cn")
as necessary.
Maintainer: ‘Arvid Sjolander <arvid.sjolander@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arvid",
                    family = "Sjolander",
                    role = c("aut", "cre"),
                    email = "arvid.sjolander@ki.se")
as necessary.
user system elapsed
cgmreport 4.053  0.195   5.223
 OK
user system elapsed
newggslopegraph 4.805  0.031    5.78
 OK
Maintainer: ‘Shan Ba <shanbatr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shan",
                      family = "Ba",
                      role = c("aut", "cre"),
                      email = "shanbatr@gmail.com"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Maintainer: ‘Carl Witthoft <cellocgw@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carl",
                    family = "Witthoft",
                    role = c("aut", "cre"),
                    email = "cellocgw@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cpt.geo-class.Rd: ggplot2
  data.set.Rd: data.set-methods
  data.set_-.Rd: data.set<--methods
  pen.value.Rd: pen.value-methods
  pen.value_-.Rd: pen.value<--methods
  test.stat.Rd: test.stat-methods
  test.stat_-.Rd: test.stat<--methods
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Haotian Xu <haotian.xu@uclouvain.be>’

The Description field contains
  <arXiv:2006.03283>; 2) univariate polynomials:
  <doi:10.1214/20-AOS1953>, <arXiv:2101.05477>, <arXiv:2110.06450>; 6)
  high-dimensional linear regression models: <arXiv:2010.10410>,
  <arXiv:2207.12453>; 7) high-dimensional vector autoregressive models:
  <arXiv:1909.06359>; 8) high-dimensional self exciting point processes:
  <arXiv:2006.03572>; 9) dependent dynamic nonparametric random dot
  product graphs: <arXiv:1911.07494>; 10) univariate mean against
  adversarial attacks: <arXiv:2105.10417>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) Hausdorff.dist.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{vec1}{A \code{integer} vector forms a subset of {1, 2, ..., n}.}
       |                                                       ^
checkRd: (-1) Hausdorff.dist.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{vec2}{A \code{integer} vector forms a subset of {1, 2, ..., n}.}
       |                                                       ^
checkRd: (-1) online.univar.multi.Rd:47-57: Lost braces
    47 | online.univar.one2 = function(y_vec, gamma, tau_gamma, ...){
       |                                                            ^
checkRd: (-1) online.univar.multi.Rd:50-55: Lost braces
    50 |   while(FLAG == 0 & t <= length(y_vec)){
       |                                        ^
checkRd: (-1) online.univar.multi.Rd:71-89: Lost braces
    71 | online.univar.one3 = function(y_vec, tau_vec, ...){
       |                                                   ^
checkRd: (-1) online.univar.multi.Rd:72-74: Lost braces
    72 |   if(length(y_vec) != length(tau_vec)){
       |                                       ^
checkRd: (-1) online.univar.multi.Rd:77-87: Lost braces
    77 |   while(FLAG == 0 & t <= length(y_vec)){
       |                                        ^
checkRd: (-1) online.univar.multi.Rd:81-86: Lost braces
    81 |     while(j < J & FLAG == 0){
       |                             ^
user system elapsed
WBSIP.cov 4.051  0.333   5.392
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  changepointsVar-package.Rd: lars
  jumpointsVar.Rd: lars
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
change_point_analyzer 3.884  0.114   5.884
 OK
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hongyuan",
                      family = "Cao",
                      role = "aut"),
               person(given = c("Wei", "Biao"),
                      family = "Wu",
                      role = "aut"),
               person(given = c("Shannon", "T."),
                      family = "Holloway",
                      role = c("aut", "cre"),
                      email = "shannon.t.holloway@gmail.com"))
as necessary.
user system elapsed
fitS 3.757  0.107   5.329
 OK
Maintainer: ‘Davide Altomare <davide.altomare@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Davide",
                    family = "Altomare",
                    role = c("aut", "cre"),
                    email = "davide.altomare@gmail.com")
as necessary.
Maintainer: ‘Marco Tschimpke <marco.tschimpke@plus.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thimo",
                      family = "Kasper",
                      role = "aut",
                      email = "thimo.kasper@plus.ac.at"),
               person(given = "Florian",
                      family = "Griessenberger",
                      role = "aut",
                      email = "florian.griessenberger@plus.ac.at"),
               person(given = "Manuela",
                      family = "Schreyer",
                      role = "aut",
                      email = "manuelalarissa.schreyer@sbg.ac.at"),
               person(given = "Johannes",
                      family = "Bartel",
                      role = "aut"),
               person(given = "Wolfgang",
                      family = "Trutschnig",
                      role = "aut",
                      email = "Wolfgang.Trutschnig@sbg.ac.at"),
               person(given = "Marco",
                      family = "Tschimpke",
                      role = "cre",
                      email = "marco.tschimpke@plus.ac.at"))
as necessary.
checkRd: (-1) cql.Rd:28: Lost braces; missing escapes or markup?
    28 | {X} \code{<x_var>, <(x_facet)>}: \tab\tab\tab\tab  X-axis variable. May include a second categorical\cr
       | ^
checkRd: (-1) cql.Rd:30: Lost braces; missing escapes or markup?
    30 | {Y} \code{<y_var>}: \tab\tab\tab\tab Y-axis variable. *Not used for \code{hist}.\cr
       | ^
checkRd: (-1) cql.Rd:38: Lost braces; missing escapes or markup?
    38 | {Y_label} \code{'<ylab>'}: \tab\tab\tab\tab  Y-axis custom label. Defaults to <y_var>\cr
       | ^
checkRd: (-1) cql.Rd:39: Lost braces; missing escapes or markup?
    39 | {Legend} \code{'<legend>'}: \tab\tab\tab\tab  Legend custom label. Defaults to <x_category>\cr
       | ^
checkRd: (-1) cql.Rd:40: Lost braces; missing escapes or markup?
    40 | {Colorset} \code{'<clist>'}: \tab\tab\tab\tab  Custom set of colors for <x_category> levels.\cr
       | ^
checkRd: (-1) cql.Rd:42: Lost braces; missing escapes or markup?
    42 | {AggFunc} \code{'<func>'}: \tab\tab\tab\tab Summary function for \code{bar} type.\cr
       | ^
checkRd: (-1) cql.Rd:45: Lost braces; missing escapes or markup?
    45 | {Fit} \code{'<show_se>'}: \tab\tab\tab\tab Valid types: \code{true|false}. Fit quadratic line.\cr
       | ^
checkRd: (-1) cql.Rd:47: Lost braces; missing escapes or markup?
    47 | {ConfInt} \code{'<interval>'}: \tab\tab\tab\tab  Show error bars. Value is confidence interval value. E.g. '.95'
       | ^
checkRd: (-1) create_unit_tests.Rd:17: Lost braces; missing escapes or markup?
    17 | Create `{testthat}` test cases for the code.
       |         ^
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘check_hint.R’ ‘check_hints.R’ ‘check_question.R’ ‘insert_audio.R’
File ‘checkmate/libs/checkmate.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  checkpoint.Rd: pkgdepends
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lawrence Hudson <quicklizard@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Lawrence", "Hudson", "with", "contributions", "from", "Dan"),
                      family = "Reuman",
                      role = "aut"),
               person(given = "Rob",
                      family = "Emerson",
                      role = "aut"),
               person(given = "Lawrence",
                      family = "Hudson",
                      role = "cre",
                      email = "quicklizard@googlemail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pipe.Rd: magrittr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
chem16S-data         4.855  0.386   6.156
phyloseq_integration 4.965  0.193   5.951
 OK
Maintainer: ‘Haitian Xie <xht@gsm.pku.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haitian",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "xht@gsm.pku.edu.cn")
as necessary.
user system elapsed
chest_plot 5.186  0.094   6.506
 OK
user system elapsed
fill.in.zeros 4.814   0.19    4.86
 OK
Maintainer: ‘Stef van Buuren <stef.vanbuuren@tno.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
generar_circunscripciones 3.894  0.164   5.289
 OK
Maintainer: ‘Stefan Roediger <stefan.roediger@b-tu.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) C316.amp.Rd:28-32: Lost braces
    28 |     40 x {
       |          ^
checkRd: (-1) C317.amp.Rd:28-32: Lost braces
    28 |     40 x {
       |          ^
checkRd: (-1) C60.amp.Rd:63-67: Lost braces
    63 |     40 x {
       |          ^
Unknown package ‘qpcR’ in Rd xrefs
user system elapsed
capillaryPCR 4.615  0.156   6.598
 OK
Maintainer: ‘Kauê de Sousa <kaue.desousa@inn.no>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  chkpt_brms.Rd: brms
  make_brmsfit.Rd: brms
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Package unavailable to check Rd xrefs: ‘cmdstanr’
user system elapsed
chngptm 4.518  0.005   5.351
 OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘closestdist_gcms.Rd’ ‘compare_gcms.R’ ‘compare_gcms.Rd’
    ‘cor_gcms.Rd’ ‘dist_gcms.Rd’ ‘env_gcms.Rd’ ‘flatten_gcms.Rd’
    ‘hclust_gcms.Rd’ ‘kmeans_gcms.R’ ‘kmeans_gcms.Rd’
    ‘montecarlo_gcms.Rd’ ‘optk_gcms.Rd’ ‘summary_gcms.Rd’
    ‘transform_gcms.R’ ‘transform_gcms.Rd’
user system elapsed
compare_gcms    7.051  0.161   8.640
montecarlo_gcms 4.604  0.027   5.559
 OK
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Axel",
                      family = "Gandy",
                      role = c("aut", "cre"),
                      email = "a.gandy@imperial.ac.uk"),
               person(given = c("F.", "Din-Houn"),
                      family = "Lau",
                      role = "aut"))
as necessary.
Maintainer: ‘Jonathan Rosenblatt <johnros@bgu.ac.il>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Rosenblatt",
                    role = c("aut", "cre"),
                    email = "johnros@bgu.ac.il")
as necessary.
Maintainer: ‘Ari Lamstein <ari@lamsteinconsulting.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ari",
                    family = "Lamstein",
                    role = c("aut", "cre"),
                    email = "ari@lamsteinconsulting.com")
as necessary.
Maintainer: ‘Ari Lamstein <ari@lamsteinconsulting.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ari",
                    family = "Lamstein",
                    role = c("aut", "cre"),
                    email = "ari@lamsteinconsulting.com")
as necessary.
Maintainer: ‘Matthieu Herrmann <matthieu.herrmann@monash.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hailong Chai <chaihl17@lzu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hailong",
                    family = "Chai",
                    role = c("aut", "cre"),
                    email = "chaihl17@lzu.edu.cn")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Ryacas-all.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ggpng.Rd: ggsave
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Author field differs from that derived from Authors@R
  Author:    ‘Garrick Aden-Buie [aut, cre] (<https://orcid.org/0000-0002-7111-0077>), Winston Chang [aut], Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Garrick Aden-Buie [aut, cre] (ORCID: <https://orcid.org/0000-0002-7111-0077>), Winston Chang [aut], Barret Schloerke [aut] (ORCID: <https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bind_record.Rd’ ‘chronicle.R’ ‘fmap_record.Rd’
    ‘grapes-greater-than-equals-grapes.Rd’ ‘pick.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  insert_chunkwise_into.Rd: tbl
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
checkRd: (-1) chunker-methods.Rd:63: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) chunker-methods.Rd:64: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) chunker-methods.Rd:69: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) chunker-methods.Rd:70: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘William Nickols <willnickols@college.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "William",
                    family = "Nickols",
                    role = c("aut", "cre"),
                    email = "willnickols@college.harvard.edu")
as necessary.
Maintainer: ‘Juris Meija <juris.meija@nrc-cnrc.gc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juris",
                      family = "Meija",
                      role = c("aut", "cre"),
                      email = "juris.meija@nrc-cnrc.gc.ca"),
               person(given = "Antonio",
                      family = "Possolo",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘abundances2ratios.Rd’:
    http://dx.doi.org/10.1088/0026-1394/45/4/012
    https://doi.org/10.1088/1681-7575/aa634d
  File ‘at.weight.Rd’:
    http://dx.doi.org/10.1088/0026-1394/45/1/008
    https://doi.org/10.1088/1681-7575/aa634d
  File ‘ciaaw.mass.2012.Rd’:
    https://doi.org/10.1088/1674-1137/41/3/030003
  File ‘ciaaw.mass.2016.Rd’:
    https://doi.org/10.1088/1674-1137/41/3/030003
  File ‘mmm.Rd’:
    http://dx.doi.org/10.1002/sim.6789
    https://doi.org/10.1088/1681-7575/aa634d
  File ‘normalize.ratios.Rd’:
    http://dx.doi.org/10.1088/0026-1394/45/1/008
    https://doi.org/10.1088/1681-7575/aa634d
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
user system elapsed
PlotCumulativeMeanTrace 2.239  0.091   5.756
CollectUniqueObjects    0.030  0.017   6.759
PostProcessChains       0.018  0.004   5.614
 OK
Maintainer: ‘Jeffrey Durieux <durieux.jeffrey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeffrey",
                      family = "Durieux",
                      role = c("aut", "cre"),
                      email = "durieux.jeffrey@gmail.com"),
               person(given = "Tom",
                      family = "Wilderjans",
                      role = "aut"),
               person(given = c("Juan", "Claramunt"),
                      family = "Gonzalez",
                      role = "ctb"))
as necessary.
Maintainer: ‘Sokbae Lee <sl3841@columbia.edu>’

The Description field contains
  <arXiv:2004.08318 [econ.EM]>, accepted for publication in Journal of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
user system elapsed
AAA_DML 4.685  0.267   6.328
 OK
Running ‘testthat.R’ [12s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ciccr)
  > 
  > test_check("ciccr")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 37 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-ciccr.R:257:3'): Checking bootstrap provides warning for abnormal data for cicc_AR ──
  sum((results$return_code != "Success: no bootstrap sample is dropped")) == 
      0 is not FALSE
  
  `actual`:   TRUE 
  `expected`: FALSE
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 37 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Stefan Konigorski <stefan.konigorski@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dadong Zhang <dzhang4@illumina.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dadong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "dzhang4@illumina.com"),
               person(given = "Jingye",
                      family = "Wang",
                      role = "aut",
                      email = "jwang16@illumina.com"),
               person(given = "Suqin",
                      family = "Cai",
                      role = "aut",
                      email = "scai1@illumina.com"),
               person(given = "Johan",
                      family = "Surtihadi",
                      role = "aut",
                      email = "jsurtihadi@illumina.com"))
as necessary.
checkRd: (-1) ec.datalag.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{prepares Dy y_1 Dy_1 ... Dy_{nlag-1} for estimation}
       |                                    ^
checkRd: (-1) ec.datalag.Rd:15: Lost braces
    15 | ymat contains the folloiwing columns {Dy y_1 Dy_1 ... Dy_{nlag-1}}
       |                                      ^
checkRd: (-1) ec.datalag.Rd:15: Lost braces; missing escapes or markup?
    15 | ymat contains the folloiwing columns {Dy y_1 Dy_1 ... Dy_{nlag-1}}
       |                                                          ^
checkRd: (-1) lagn.Rd:21: Lost braces; missing escapes or markup?
    21 |              REM: alternative to "lead-lag" {dplyr} which applies to vector y
       |                                             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘long_est.R’
Maintainer: ‘Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aurelie",
                      family = "Siberchicot",
                      role = c("aut", "cre"),
                      email = "aurelie.siberchicot@univ-lyon1.fr"),
               person(given = "Adrien",
                      family = "Merville",
                      role = "aut"),
               person(given = "Marie-Claude",
                      family = "Bel-Venner",
                      role = "aut"),
               person(given = "Samuel",
                      family = "Venner",
                      role = "aut"))
as necessary.
Maintainer: ‘Vishal H. Oza <vishoza@uab.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vishal", "H."),
                      family = "Oza",
                      role = c("aut", "cre"),
                      email = "vishoza@uab.edu"),
               person(given = "Roshan",
                      family = "Darji",
                      role = "aut"),
               person(given = c("Brittany", "N."),
                      family = "Lasseigne",
                      role = "aut"))
as necessary.
Maintainer: ‘Toshiaki Ara <toshiaki.ara@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Toshiaki",
                    family = "Ara",
                    role = c("aut", "cre"),
                    email = "toshiaki.ara@gmail.com")
as necessary.
checkRd: (-1) CIplot.Rd:58: Lost braces; missing escapes or markup?
    58 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.
       |                       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘functions.R’
user system elapsed
remove_cardinal_biases 9.92   0.27  10.726
 OK
Maintainer: ‘Robert Fitak <rfitak9@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
mnntsparametersunderindependenceunivariate 3.631  0.005   5.049
 OK
Maintainer: ‘Maria Mercedes Gregorio-Dominguez <mercedes@itam.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Jose"),
                      family = "Fernandez-Duran",
                      role = "aut"),
               person(given = c("Maria", "Mercedes"),
                      family = "Gregorio-Dominguez",
                      role = c("aut", "cre"),
                      email = "mercedes@itam.mx"))
as necessary.
Maintainer: ‘Azade Ghazanfarihesari <azade_ghazanfari@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Azade",
                      family = "Ghazanfarihesari",
                      role = c("aut", "cre"),
                      email = "azade_ghazanfari@yahoo.com"),
               person(given = c("Majid", "Sarmad-", "Ferdowsi", "University", "Of"),
                      family = "Mashhad",
                      role = "aut"))
as necessary.
Maintainer: ‘Mario Santoro <santoro.ma@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/santoroma/CircSpaceTime
which should likely be
  https://github.com/santoroma/CircSpaceTime/issues
instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Claudio Agostinelli <claudio.agostinelli@unitn.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S-plus", "original", "by", "Ulric"),
                      family = "Lund",
                      role = "aut",
                      email = "ulund@calpoly.edu"),
               person(given = c("R", "port", "by", "Claudio"),
                      family = "Agostinelli",
                      role = "aut",
                      email = "claudio.agostinelli@unitn.it"),
               person(given = "Claudio",
                      family = "Agostinelli",
                      role = "cre",
                      email = "claudio.agostinelli@unitn.it"))
as necessary.
checkRd: (-1) rstable.Rd:42: Lost braces
    42 | Lo\"{g}ae\"{v}e, M. (1977). Probability Theory I. (fourth edition) Springer-Verlag, New York.
       |     ^
checkRd: (-1) rstable.Rd:42: Lost braces
    42 | Lo\"{g}ae\"{v}e, M. (1977). Probability Theory I. (fourth edition) Springer-Verlag, New York.
       |            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  circ.plot.Rd: eqscplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Evandro Konzen <circularev.r@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Evandro",
                    family = "Konzen",
                    role = c("aut", "cre"),
                    email = "circularev.r@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cirls.fit.Rd’ ‘confint.cirls.Rd’
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(cirls)
  > 
  > test_check("cirls")
  
  warning: solve(): system is singular; attempting approx solution
  
  warning: solve(): system is singular; attempting approx solution
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 75 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-cirls_results.R:91:3'): results respect constraints ──────────
  all(diff(coef(poisinc)[-1]) >= (0 - 1e-06)) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 75 ]
  Error: Test failures
  Execution halted
Maintainer: ‘James Joseph Balamuta <balamut2@illinois.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Marek Gagolewski <marek@gagolewski.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  dbExecQuery.Rd: dbSendQuery, dbClearResult, dbGetQuery
  lbsClear.Rd: dbCommit, dbRollback
  lbsDeleteAllAuthorsDocuments.Rd: dbCommit, dbRollback
  lbsTidy.Rd: dbCommit, dbRollback
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Neal Haddaway <nealhaddaway@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) data_generator.Rd:93: Lost braces; missing escapes or markup?
    93 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                     ^
checkRd: (-1) data_generator.Rd:93: Lost braces; missing escapes or markup?
    93 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                             ^
checkRd: (-1) data_generator.Rd:95: Lost braces; missing escapes or markup?
    95 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++}, S_{*+}
       |                                                                 ^
checkRd: (-1) data_generator.Rd:95: Lost braces; missing escapes or markup?
    95 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++}, S_{*+}
       |                                                                         ^
checkRd: (-1) data_generator_loop.Rd:96: Lost braces; missing escapes or markup?
    96 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                     ^
checkRd: (-1) data_generator_loop.Rd:96: Lost braces; missing escapes or markup?
    96 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                             ^
checkRd: (-1) data_generator_loop.Rd:98: Lost braces; missing escapes or markup?
    98 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++},
       |                                                                 ^
checkRd: (-1) data_generator_loop.Rd:99: Lost braces; missing escapes or markup?
    99 |   S_{*+} and PP estimands}
       |     ^
Maintainer: ‘Kary Främling <Kary.Framling@umu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kary",
                    family = "Främling",
                    role = c("aut", "cre"),
                    email = "kary.framling@umu.se")
as necessary.

The Description field contains
  e.g. Främling (2020) <arXiv:2009.13996>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ciu.ggplot.col.Rd:41: Lost braces; missing escapes or markup?
    41 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
checkRd: (-1) ciu.meta.explain.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
checkRd: (-1) ciu.meta.result.new.Rd:30: Lost braces; missing escapes or markup?
    30 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
checkRd: (-1) ciu.textual.Rd:38: Lost braces; missing escapes or markup?
    38 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CivisFuture.Rd: Future
  civis_platform.Rd: future, plan
  write_civis_file.Rd: plan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Thomas Wiemann <wiemann@uchicago.edu>’

The Description field contains
  proposed by Wiemann (2023) <arXiv:2311.17021>. CIV allows for optimal
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stefan Konigorski <stefan.konigorski@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Raphiel Murden <rmurden@emory.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
user system elapsed
GenerateToyData 4.126  0.069   5.286
 OK
Maintainer: ‘Anton Strezhnev <astrezhnev@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Soubhik",
                      family = "Barari",
                      role = "aut"),
               person(given = "Elissa",
                      family = "Berwick",
                      role = "aut"),
               person(given = "Jens",
                      family = "Hainmueller",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Hopkins",
                      role = "aut"),
               person(given = "Sean",
                      family = "Liu",
                      role = "aut"),
               person(given = "Anton",
                      family = "Strezhnev",
                      role = c("aut", "cre"),
                      email = "astrezhnev@uchicago.edu"),
               person(given = "Teppei",
                      family = "Yamamoto",
                      role = "aut"))
as necessary.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Judong",
                      family = "Shen",
                      role = "aut"))
as necessary.
Maintainer: ‘Haoyu Zhang <andrew.haoyu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ni",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Haoyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "andrew.haoyu@gmail.com"))
as necessary.
Maintainer: ‘Eric C. Anderson <eric.anderson@noaa.gov>’

The Description field contains
  (<https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1471-8286.2005.00884.x>),
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
user system elapsed
CO2emissions 4.24  0.068   5.284
 OK
Maintainer: ‘Jonathan M. Lees<jonathan.lees@unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jonathan", "M."),
                    family = "Lees",
                    role = c("aut", "cre"),
                    email = "jonathan.lees@unc.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_cluster_composition.R’ ‘extract_ids_vector.R’
    ‘perform_clustering.R’
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) get_langs.Rd:13: Lost braces
    13 | character vector listing all the languages that tag API call supports. See \code{\link{tag_images}} and code{\link{tag_image_urls}}
       |                                                                                                             ^
user system elapsed
sim_adrf 5.214  0.248   6.895
 OK
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  generate_classification_data.Rd: knn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jakob Raymaekers <jakob.raymaekers@kuleuven.be>’

The Description field contains
  and tree-based classifiers, <arXiv:2106.08814>. Examples can be found
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chris J. Lloyd <c.lloyd@mbs.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chris", "J."),
                    family = "Lloyd",
                    role = c("aut", "cre"),
                    email = "c.lloyd@mbs.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_raster.Rd’ ‘clc.R’ ‘clc_category.R’ ‘clc_raster.R’ ‘copy_to.Rd’
    ‘cut_to_extent.Rd’ ‘get_colors.Rd’ ‘get_levels.Rd’ ‘get_raster.Rd’
    ‘plot_clc.Rd’ ‘prepare_plot.Rd’ ‘save_to.Rd’
user system elapsed
as_raster 5.747  0.286   7.857
 OK
Maintainer: ‘Florencia I. Pozzi <florenciapoz@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Florencia", "I."),
                      family = "Pozzi",
                      role = c("aut", "cre"),
                      email = "florenciapoz@hotmail.com"),
               person(given = c("Silvina", "A."),
                      family = "Felitti",
                      role = "aut"))
as necessary.
Maintainer: ‘Sherry Zhao <sxzhao@gwu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sherry",
                    family = "Zhao",
                    role = c("aut", "cre"),
                    email = "sxzhao@gwu.edu")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Karim Mané [aut, cre] (<https://orcid.org/0000-0002-9892-2999>), Thibaut Jombart [ctb] (Thibault contributed in development of date_guess().), Abdoelnaser Degoot [aut] (<https://orcid.org/0000-0001-8788-2496>), Bankolé Ahadzie [aut], Nuredin Mohammed [aut], Bubacarr Bah [aut] (<https://orcid.org/0000-0003-3318-6668>), Hugo Gruson [ctb, rev] (<https://orcid.org/0000-0002-4094-1476>), Pratik R. Gupte [rev] (<https://orcid.org/0000-0001-5294-7819>), James M. Azam [rev] (<https://orcid.org/0000-0001-5782-7330>), Joshua W. Lambert [rev] (<https://orcid.org/0000-0001-5218-3046>), Chris Hartgerink [rev] (<https://orcid.org/0000-0003-1050-6809>), Andree Valle-Campos [rev, ctb] (<https://orcid.org/0000-0002-7779-481X>), London School of Hygiene and Tropical Medicine, LSHTM [cph] (00a0jsq62), data.org [fnd]’
  Authors@R: ‘Karim Mané [aut, cre] (ORCID: <https://orcid.org/0000-0002-9892-2999>), Thibaut Jombart [ctb] (Thibault contributed in development of date_guess().), Abdoelnaser Degoot [aut] (ORCID: <https://orcid.org/0000-0001-8788-2496>), Bankolé Ahadzie [aut], Nuredin Mohammed [aut], Bubacarr Bah [aut] (ORCID: <https://orcid.org/0000-0003-3318-6668>), Hugo Gruson [ctb, rev] (ORCID: <https://orcid.org/0000-0002-4094-1476>), Pratik R. Gupte [rev] (ORCID: <https://orcid.org/0000-0001-5294-7819>), James M. Azam [rev] (ORCID: <https://orcid.org/0000-0001-5782-7330>), Joshua W. Lambert [rev] (ORCID: <https://orcid.org/0000-0001-5218-3046>), Chris Hartgerink [rev] (ORCID: <https://orcid.org/0000-0003-1050-6809>), Andree Valle-Campos [rev, ctb] (ORCID: <https://orcid.org/0000-0002-7779-481X>), London School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR: <https://ror.org/00a0jsq62>), data.org [fnd]’
user system elapsed
scan_data 4.655   0.12   6.782
 OK
user system elapsed
cv11_vca_by_median 7.608  0.208   9.542
cv25_qbinom_ppu    6.486  0.020   7.721
cv26_qpoisson_ppu  4.667  0.051   5.718
 OK
Maintainer: ‘Taylor B. Arnold <tarnold2@richmond.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Taylor", "B."),
                    family = "Arnold",
                    role = c("aut", "cre"),
                    email = "tarnold2@richmond.edu")
as necessary.
Maintainer: ‘Pierre Roudier <roudierp@landcareresearch.co.nz>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    clhs_0.7-2
    clhs_0.7-0
    clhs_0.6-0
    clhs_0.5-7
    clhs_0.5-6
    clhs_0.5-3
    clhs_0.5-2
    clhs_0.5-1
    clhs_0.5-0
    clhs_0.4-3
    clhs_0.4-2
    clhs_0.4-1
    clhs_0.4-0
    clhs_0.3-2
    clhs_0.3-1
    clhs_0.3-0
    clhs_0.2-1
    clhs_0.2-0
    clhs_0.1-0
Maintainer: ‘Michael P.B. Gallaugher <gallaump@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "P.B."),
                      family = "Gallaugher",
                      role = c("aut", "cre"),
                      email = "gallaump@mcmaster.ca"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1802.04849>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ClickHouseHTTPConnection-class.Rd: dbConnect
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael Scholz <michael.scholz@th-deg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Scholz",
                      role = c("aut", "cre"),
                      email = "michael.scholz@th-deg.de"),
               person(given = "Theo",
                      family = "van Kraay",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fitMarkovChain.Rd: Rsolnp
  frequencies.Rd: transactions
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
user system elapsed
getConsensusClustersParallel 0.535  0.283   5.604
 OK
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘horner.Rd’
checkRd: (-1) cf_save_kml.Rd:68: Lost braces
    68 | \code{\link{cf_find_station}} and code{vignette("choose-station")} for
       |                                       ^
user system elapsed
liftHurstCC 4.757  0.008   5.884
 OK
Maintainer: ‘Yanming Li <liyanmin@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yanming",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "liyanmin@umich.edu"),
               person(given = "Kerby",
                      family = "Shedden",
                      role = "aut"),
               person(given = c("Brenda", "W."),
                      family = "Gillespie",
                      role = "aut"),
               person(given = c("John", "A."),
                      family = "Gillespie",
                      role = "aut"))
as necessary.

File 'R/clikcorr-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
user system elapsed
clikcorr.lrt 3.591  0.017   5.532
 OK
Maintainer: ‘Hannah Owens <hannah.owens@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jose A. Guijarro <jaguijarro21@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jose", "A."),
                    family = "Guijarro",
                    role = c("aut", "cre"),
                    email = "jaguijarro21@gmail.com")
as necessary.
user system elapsed
dahgrid 7.434  0.393   9.602
 OK
Maintainer: ‘Kauê de Sousa <desousa.kaue@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xi (Rossi) Luo <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("T.", "Tony"),
                      family = "Cai",
                      role = "aut"),
               person(given = "Weidong",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xi",
                      family = "Luo",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Xi",
                      family = "Luo",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.
Maintainer: ‘Fergus Reig-Gracia <fergusrg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fergus",
                      family = "Reig-Gracia",
                      role = c("aut", "cre"),
                      email = "fergusrg@gmail.com"),
               person(given = c("Sergio", "M."),
                      family = "Vicente-Serrano",
                      role = "aut"),
               person(given = "Fernando",
                      family = "Dominguez-Castro",
                      role = "aut"),
               person(given = "Joaquin",
                      family = "Bedia-Jiménez",
                      role = "ctb"))
as necessary.
Maintainer: ‘Liam D. Bailey <liam.bailey@liamdbailey.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Liam", "D."),
                      family = "Bailey",
                      role = c("aut", "cre"),
                      email = "liam.bailey@liamdbailey.com"),
               person(given = "Martijn",
                      family = "van de Pol",
                      role = "aut"))
as necessary.
user system elapsed
scatterplotClinData 6.49  0.164   8.493
 OK
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  clinDR-package.Rd: DoseFinding
  emaxsim.Rd: Mods
  emaxsimB.Rd: Mods
  fitEmaxB.Rd: rstan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘calc_rci.R’
user system elapsed
cs_anchor 4.164  0.173   6.213
 OK
Maintainer: ‘Daewoo Pak <heavyrain.pak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daewoo",
                      family = "Pak",
                      role = c("aut", "cre"),
                      email = "heavyrain.pak@gmail.com"),
               person(given = "Song",
                      family = "Yang",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘ClinicalTrialSummary-package.Rd’:
    \keyword{Survival analysis, Clinical trials, Hazar [TRUNCATED]
Maintainer: ‘Anu Mishra <anmishra@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anu",
                    family = "Mishra",
                    role = c("aut", "cre"),
                    email = "anmishra@uw.edu")
as necessary.
Maintainer: ‘Mike Malek-Ahmadi <michael.malekahmadi@bannerhealth.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mike",
                      family = "Malek-Ahmadi",
                      role = c("aut", "cre"),
                      email = "michael.malekahmadi@bannerhealth.com"),
               person(given = "Kjera",
                      family = "Schack",
                      role = "aut",
                      email = "kgschack@asu.edu"))
as necessary.
Maintainer: ‘Jim Lemon <drjimlemon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Lemon,",
                      role = "aut",
                      email = "drjimlemon@gmail.com"),
               person(given = "Jim",
                      family = "Lemon",
                      role = "cre",
                      email = "drjimlemon@gmail.com"))
as necessary.
checkRd: (-1) clinsig.Rd:129: Lost braces
   129 |  be calculated with the measures specified in samp{mct} and samp{disp},
       |                                                   ^
checkRd: (-1) clinsig.Rd:129: Lost braces
   129 |  be calculated with the measures specified in samp{mct} and samp{disp},
       |                                                                 ^
Maintainer: ‘Karandeep Singh <kdpsingh@umich.edu>’

The Description field contains
  embeddings developed by Beam (2018) <arXiv:1804.01486>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  knitPrintListObjects.Rd: knitr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Neel Agarwal <neel.agarwal.216@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Neel",
                    family = "Agarwal",
                    role = c("aut", "cre"),
                    email = "nxa357@case.edu")
as necessary.
Maintainer: ‘Jens Lange <lange.jens@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Casey M. Jelsema <jelsema.casey@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Haolun Shi <shl2003@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haolun",
                      family = "Shi",
                      role = c("aut", "cre"),
                      email = "shl2003@connect.hku.hk"),
               person(given = "Guosheng",
                      family = "Yin",
                      role = "aut"))
as necessary.
Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephen",
                      family = "Reid",
                      role = c("aut", "cre"),
                      email = "sreid1652@gmail.com"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) print.clogitL1.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) print.clogitL1.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) print.clogitL1.Rd:23: Lost braces in \itemize; meant \describe ?