Problems with news in ‘NEWS.md’:
No news entries found.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘class-2-differential.r’ ‘dual-apply.r’ ‘dual-math.r’
    ‘dual-summary.r’ ‘dual-test-near-equality.r’ ‘dual.r’ ‘dualFun1.Rd’
checkRd: (-1) binaryChoice.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binaryChoice.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly
Specified C++11: please drop specification unless essential
checkRd: (-1) SAM.Rd:67: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:59: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:84: Escaped LaTeX specials: \# \$
checkRd: (-1) samr.Rd:88: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:92: Escaped LaTeX specials: \$
checkRd: (-1) samr.Rd:97: Escaped LaTeX specials: \#
checkRd: (-1) samr.assess.samplesize.plot.Rd:12: Escaped LaTeX specials: \#
Specified C++11: please drop specification unless essential
checkRd: (-1) ModelHMMR-class.Rd:37: Lost braces; missing escapes or markup?
    37 |         class {StatHMMR}).
       |               ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get_RuleBook.Rd: RLumModel-package
  measure_SAR_OSL.Rd: RLumModel-package
  set_Rule.Rd: RLumModel-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sfn_plot.Rd: geom_point, geom_col
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cmc_psat.Rd’ ‘h-fun.R’ ‘mc-test.R’ ‘tshift.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  computeCritCutLength.Rd: snowprofileSet, snowprofile,
    snowprofileLayers
  computePunstable.Rd: snowprofileSet, snowprofile, snowprofileLayers
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SASmarkdown-package.rd: knitr-package
  sas_enginesetup.rd: knit_engines
  saslog_hookset.rd: knit_hooks
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) gen.ds.Rd:43-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:50-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gen.ds.Rd:64-65: Lost braces
    64 |    \item{the dependence parameter \code{dep} or the vector of dependence parameters \code{dep}. When missing, these coefficients are obtained from independent standard uniform sampling.
       |         ^
checkRd: (-1) gen.ds.Rd:66: Lost braces
    66 |    \item{the list \code{asy} of asymmetric weights \eqn{\beta_{i,b}} for \eqn{b \in B}  and \eqn{i \in b}. When missing, these coefficients are obtained from independent standard uniform sampling followed by renormalization in order to satisfy the sum-to-one constraints.}
       |         ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  alignGeometry.Rd: resample, projectRaster
  calcTopoCorr.Rd: hillShade, writeRaster
  crop.Rd: extent
  demTools.Rd: hillShade
  satellite.Rd: raster
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  crop.Rd: getpoly
  isolines.Rd: convCP, PolySet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_SpatRaster.Rd’ ‘clip_bands.Rd’ ‘get_band_names.Rd’
    ‘get_spatial_resolution.Rd’ ‘get_spectral_band_names.Rd’
    ‘merge_tiles.Rd’ ‘save_by_resolution.Rd’ ‘select_bands.Rd’
checkRd: (-1) OTC.Rd:42: Lost braces; missing escapes or markup?
    42 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) OTC.Rd:83: Lost braces; missing escapes or markup?
    83 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) OTHist.Rd:29: Lost braces; missing escapes or markup?
    29 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
checkRd: (-1) dOTC.Rd:72: Lost braces; missing escapes or markup?
    72 | discretizing R^{numbers of variables}. If NULL, it is estimating
       |                ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Shift.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  summary.sbde.Rd: geweke.diag
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) setData.ReducedRankRegressions.Rd:14-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) setData.ReducedRankRegressions.Rd:17-18: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Updated help pages with examples
    Updated conjugate model sampler
Specified C++11: please drop specification unless essential
'library' or 'require' calls not declared from:
  ‘maps’ ‘sp’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  custom_scaffold_py_function_wrapper.Rd: py_function_docs
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
License stub is invalid DCF.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) get.events.Rd:51: Lost braces
    51 |   code{\link[deSolve]{events}}
       |       ^
checkRd: (-1) scatterD3.Rd:209: Lost braces; missing escapes or markup?
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       | ^
checkRd: (-1) scatterD3.Rd:209: Lost braces
   209 | {https://github.com/skokenes/D3-Lasso-Plugin}{d3-lasso-plugin} feature}
       |                                              ^
checkRd: (-1) PermBiclust.beta.ks.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.}
       |                              ^
checkRd: (-1) PermBiclust.beta.ks.Rd:30: Lost braces
    30 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals}
       |                           ^
checkRd: (-1) PermBiclust.sigclust.Rd:32: Lost braces; missing escapes or markup?
    32 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.}
       |                              ^
checkRd: (-1) PermBiclust.sigclust.Rd:33: Lost braces
    33 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals}
       |                           ^
checkRd: (-1) PermBiclust.sigclust_stop.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{\code{num.bicluster}}: {The number of biclusters estimated by the procedure.}
       |                              ^
checkRd: (-1) PermBiclust.sigclust_stop.Rd:36: Lost braces
    36 | \item{\code{x.residual}}: {The data matrix \code{x} after removing the signals}
       |                           ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  PermBiclust.beta.ks.Rd: KMeansSparseCluster
  PermBiclust.sigclust.Rd: sigclust, KMeansSparseCluster
  PermBiclust.sigclust_stop.Rd: sigclust, KMeansSparseCluster
  PermHclust.sigclust.Rd: HierarchicalSparseCluster, sigclust
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' calls not declared from:
  ‘doSNOW’ ‘foreach’ ‘iterators’ ‘reshape’ ‘rlecuyer’ ‘snow’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nap.R’ ‘randomization_test.R’ ‘scdtb.R’
checkRd: (-1) get_profile.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_profile.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_profile.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_profile.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_profile.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get_scholar_resp.Rd: response, GET
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  step_aggregate_hclust.Rd: selections, bake, prep
  step_aggregate_list.Rd: selections, bake, prep
  step_rownormalize_tss.Rd: selections, bake, prep
  step_select_background.Rd: selections, bake, prep
  step_select_cv.Rd: selections, bake, prep
  step_select_kruskal.Rd: selections, bake, prep
  step_select_wilcoxon.Rd: selections, bake, prep
  step_taxonomy.Rd: selections, bake, prep
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fitSCI.Rd: mledist, fitdistrplus
  genlog.Rd: pdfglo, quaglo, cdfglo
  pe3.Rd: pdfpe3, quape3, cdfpe3
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sclr.Rd: broom
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  spatialPreprocess.Rd: BiocSingularParam-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
checkRd: (-1) reduce_dimensionality.Rd:19: Lost braces
    19 | \item{ndim}{the maximum dimension of the space which the data are to be represented in; must be in {1, 2, \ldots, n-1}.}
       |                                                                                                    ^
checkRd: (-1) ti_scorpius.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{distance_method}{A character string indicating which correlationcoefficient (or covariance) is to be computed. One of "pearson", "spearman" (default), or "cosine". Domain: {spearman, pearson, cosine}. Default: spearman. Format: character.}
       |                                                                                                                                                                                   ^
checkRd: (-1) ti_scorpius.Rd:30: Lost braces; missing escapes or markup?
    30 | \item{smoother}{\code{principal_curve} parameter; choice of smoother. Domain: {smooth_spline, lowess, periodic_lowess}. Default: smooth_spline. Format: character.}
       |                                                                               ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘clipboard.R’ ‘display.R’ ‘locate_image.R’ ‘screenshot.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plotting.R’
checkRd: (-1) simulateSNPs.Rd:46: Escaped LaTeX specials: \& \& \&
checkRd: (-1) simulateSNPs.Rd:80: Escaped LaTeX specials: \& \& \&
checkRd: (-1) scriptloc.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Get location of script in a fashion analagous to ${BASH_SOURCE[0]}}
       |                                                          ^
Found the following files/directories:
  ‘untitled_consensus_cluster’
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                  ^
checkRd: (-1) cln.Rd:27: Lost braces
    27 |    case for text \code{1} for 1st uppercase, code{2} for lowercase, code{3} for uppercase (optional)
       |                                                                         ^
checkRd: (-1) geom_flat_violin.Rd:7: Lost braces
     7 | url{https://gist.github.com/dgrtwo/eb7750e74997891d7c20}
       |    ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  modRisk.Rd: loglm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) sdc_extabs.Rd:59: Lost braces
    59 | (including ]code{forcelist} variables) that can be used to form tables.}
       |                 ^
Problems with news in ‘NEWS.md’:
No news entries found.
File ‘sde/libs/sde.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
checkRd: (-1) msdpd.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) msdpd.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpd.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
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checkRd: (-1) msdpd.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:84: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) msdpdth.Rd:93: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) msdpdth.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) msdpdth.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) hyperpar.Rd:17: Lost braces
    17 | \item{c}{denotes the expected range of eqn{f} .}
       |                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assign_meta_data.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘series.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  casecross.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) seas.check.Rd:48-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:52-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) seas.check.Rd:58: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cla_secsse_ml.Rd: DDD
  cla_secsse_ml_func_def_pars.Rd: DDD
  default_params_doc.Rd: DDD
  secsse_ml.Rd: DDD
  secsse_ml_func_def_pars.Rd: DDD
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) seedCCA.Rd:17: Lost braces; missing escapes or markup?
    17 | \item{u}{numeric, maximum number of projections. The default is 10. This is used for \code{type="seed1"}, \code{type="seed2"} and {tyepe="pls"}.}
       |                                                                                                                                   ^
Package required but not available: ‘msa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  seeds-package.Rd: Deriv, ode
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  noisew.Rd: pulse
  synth.Rd: pulse
  synth2.Rd: pulse
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  garch.seg-class.Rd: foreach
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Malformed Title field: should not end in a period.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘selcorr.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as.list.selenider_elements.Rd’ ‘elem_ancestors.Rd’ ‘elem_attr.Rd’
    ‘elem_cache.Rd’ ‘elem_click.Rd’ ‘elem_css_property.Rd’
    ‘elem_equal.Rd’ ‘elem_expect.Rd’ ‘elem_expect_all.Rd’
    ‘elem_filter.Rd’ ‘elem_flatten.Rd’ ‘elem_hover.Rd’ ‘elem_name.Rd’
    ‘elem_scroll_to.Rd’ ‘elem_select.Rd’ ‘elem_size.Rd’ ‘elem_text.Rd’
    ‘find_each_element.Rd’ ‘find_element.Rd’ ‘find_elements.Rd’
    ‘get_actual_element.Rd’ ‘s.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  checkResponse.Rd: VERB
  errorContent.Rd: content
  errorResponse.Rd: VERB
  getPageSource.Rd: read_html
  queryDriver.Rd: VERB, content
  takeElementScreenshot.Rd: base64_dec
  takeScreenshot.Rd: base64_dec
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘boot_utils.R’
'library' or 'require' call not declared from: ‘swirl’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  spm.Rd: gam, lme, glmmPQL
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) convert2snafu.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert2snafu.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert2snafu.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert2snafu.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert2snafu.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert2snafu.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) convert2snafu.Rd:40-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) correct.changes.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) correct.changes.Rd:28-29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) correct.changes.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) correct.changes.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) correct.changes.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) correct.changes.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) correct.changes.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) textcleaner.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) textcleaner.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) textcleaner.Rd:100-101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) textcleaner.Rd:104-105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) textcleaner.Rd:116: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) textcleaner.Rd:119: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) textcleaner.Rd:130: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) textcleaner.Rd:133: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SemNetCleaner-package.Rd: SemNetDictionaries
  best.guess.Rd: SemNetDictionaries
  textcleaner.Rd: SemNetDictionaries
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) append.dictionary.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:40-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:44-47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:89-92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:95-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) append.dictionary.Rd:113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) NRW.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) NRW.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:53-54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bootSemNeT.Rd:57-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_nets.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.compareShiny.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:31-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) test.bootSemNeT.Rd:47: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  convert2igraph.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  semPaths.Rd: qgraph.layout.fruchtermanreingold
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following significant warnings:
  Warning: replacing previous import ‘mgcv::lp’ by ‘gamlss::lp’ when loading ‘semsfa’
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/semsfa.Rcheck/00install.out’ for details.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  evaluateDataLikelihood.Rd: OpenMx
  semtree.Rd: OpenMx, mxModel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) sendmail_options.Rd:32-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendmail_options.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:39-41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) match_dataphy.Rd:42-44: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sobol_dummy.Rd: boot
  sobol_indices.Rd: boot
  sobol_matrices.Rd: sobol, randomLHS
  sobol_ode.Rd: ode
  vars_matrices.Rd: sobol
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  WordCountAna.Rd: textual, MFA
  analyse_holos.Rd: MFA, FactoMineR, MCA, HMFA
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.LocationDatum.Rd: qmap, geom_point
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Specified C++14: please drop specification unless essential
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) process,HybridSequenceClassifier-method.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) SeqDesignInference.Rd:319: Lost braces; missing escapes or markup?
   319 | (a) difference in means estimator i.e. [ybar_T - ybar_C +/- t_{alpha/2, n_T + n_C - 2} s_{ybar_T - ybar_C}] or
       |                                                               ^
checkRd: (-1) SeqDesignInference.Rd:319: Lost braces; missing escapes or markup?
   319 | (a) difference in means estimator i.e. [ybar_T - ybar_C +/- t_{alpha/2, n_T + n_C - 2} s_{ybar_T - ybar_C}] or
       |                                                                                          ^
checkRd: (-1) SeqDesignInference.Rd:320: Lost braces; missing escapes or markup?
   320 | (b) the OLS estimator i.e. [beta_hat_T +/- t_{alpha/2, n + p - 2} s_{beta_hat_T}]
       |                                              ^
checkRd: (-1) SeqDesignInference.Rd:320: Lost braces; missing escapes or markup?
   320 | (b) the OLS estimator i.e. [beta_hat_T +/- t_{alpha/2, n + p - 2} s_{beta_hat_T}]
       |                                                                     ^
Found the following files/directories:
  ‘assocpointpair_result.csv’ ‘foundereffectfinder_result.csv’
  ‘getfreqs_result.csv’ ‘getfreqs_result.png’ ‘orPlot.pdf1_1.pdf’
  ‘orPlot.pdf2_1.pdf’ ‘orPlot.pdf3_1.pdf’ ‘orPlot.pdf4_1.pdf’
  ‘orPlot.pdf5_1.pdf’ ‘orPlot.pdf6_1.pdf’ ‘orPlot.pdf7_1.pdf’
  ‘orPlot.pdf8_1.pdf’ ‘q-values_result.csv’ ‘rewritetuple_result.csv’
  ‘tartan_plot.pdf’ ‘vispair_plot.pdf’ ‘vispairfeat_plot.pdf’
  ‘volcano_plot.pdf’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  seq2qha.Rd: seqdef
  seq_heatmap.Rd: seqdef, agnes, seqIplot
  seqi1epi.Rd: seqdef, seqistatd
  seqifpos.Rd: seqdef, seqistatd
  seqinepi.Rd: seqdef, seqistatd
  seqsmooth.Rd: seqdef
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fit_model.Rd: nloptr
  hidden_paths.Rd: seqIplot
  mssplot.Rd: seqplot, plot.stslist
  plot.hmm.Rd: igraph.plotting, seqplot, plot.igraph
  plot.mhmm.Rd: igraph.plotting, seqplot, plot.igraph
  seqHMM-deprecated.Rd: nloptr
  ssp.Rd: seqplot, plot.stslist
  ssplot.Rd: seqplot, plot.stslist
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘consensus.R’
checkRd: (-1) SEset_to_network.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) network_to_SEset.Rd:72: Escaped LaTeX specials: \&
checkRd: (-1) network_to_path.Rd:50: Escaped LaTeX specials: \&
checkRd: (-1) path_to_network.Rd:29: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Joiner.Rd’ ‘Splitter.Rd’ ‘add_node.Rd’ ‘print.sewage_pipeline.Rd’
    ‘pull_output.Rd’ ‘run.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sd_box.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sd_distance.Rd: sf
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘h_curve.Rd’ ‘sfc_4x4_meander.Rd’ ‘sfc_generator.Rd’
    ‘spacefilling.Rd’
File ‘sfheaders/libs/sfheaders.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘st_transform_outline.R’
Specified C++11: please drop specification unless essential
'library' or 'require' call not declared from: ‘microbenchmark’
checkRd: (-1) bisee.Rd:127: Lost braces
   127 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) hisee.Rd:101: Lost braces
   101 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) isee.Rd:116: Lost braces
   116 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
checkRd: (-1) see.Rd:98: Lost braces
    98 | values including \code{x}, \code{y}, code{family}, \code{clusterID},
       |                                          ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gPLS.Rd: cim
  gPLSda.Rd: plotIndiv, plotVar, cim, network
  sPLSda.Rd: plotIndiv, plotVar, cim, network
  sgPLSda.Rd: plotIndiv, plotVar, cim, network
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sgraph_utils.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sample_systematic.R’
checkRd: (-1) sgt.Rd:55: Lost braces
    55 |   \code{sigma <= 0}, \code{lambda <= -1}, \code{lambda >= 1}, \code{p <= 0}, and \code{q <= 0} are errors and return \code{NaN}. Also, if \code{mean.cent} is \code{TRUE} but code{p*q <= 1}, the result is an error and \code{NaNs} are produced. Similarly, if \code{var.adj} is \code{TRUE} but code{p*q <= 2}, the result is an error and \code{NaNs} are produced.
       |                                                                                                                                                                                   ^
checkRd: (-1) sgt.Rd:55: Lost braces
    55 |   \code{sigma <= 0}, \code{lambda <= -1}, \code{lambda >= 1}, \code{p <= 0}, and \code{q <= 0} are errors and return \code{NaN}. Also, if \code{mean.cent} is \code{TRUE} but code{p*q <= 1}, the result is an error and \code{NaNs} are produced. Similarly, if \code{var.adj} is \code{TRUE} but code{p*q <= 2}, the result is an error and \code{NaNs} are produced.
       |                                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) changept.Rd:17-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) changept.Rd:20-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) changept.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShape.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) powerShapeNA.Rd:32-33: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cluster.plot.Rd: vegan
  detect.outline.Rd: pixmap
  generateShapeCoefficients.Rd: wd, wavethresh
  plotWaveletShape.Rd: wavethresh
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) age_corr.Rd:15: Lost braces
    15 | \item{plot}{Should the results be plotted? (/code{TRUE/FALSE})}
       |                                                  ^
checkRd: (-1) age_corr.Rd:17: Lost braces
    17 | \item{agecorrection}{Correct for jumps in age (/code{TRUE}) or
       |                                                     ^
checkRd: (-1) age_corr.Rd:18: Lost braces
    18 | only for starting time (/code{FALSE})}
       |                              ^
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Buttons.Rd: actionButton, checkboxInput
  Collapses.Rd: tabsetPanel, shinyServer
  Modals.Rd: tabPanel
  Tooltips_and_Popovers.Rd: renderUI
  bsButton.Rd: icon
  bsExample.Rd: runApp
  popify.Rd: renderUI
  tipify.Rd: renderUI
  updateButton.Rd: icon, submitButton
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘filter_discrete.R’ ‘filter_query.R’ ‘renders.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘destroyModule.R’ ‘makeModule.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  downloadablePlot.Rd: renderPlot
  downloadablePlotUI.Rd: plotOutput
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) js_calls.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) js_calls.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pickCheckboxNamesAndLabels.Rd:14: Lost braces
    14 | \item{choices}{link{pickCheckboxInput} choices list.}
       |                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘continue_sequence.R’ ‘get_exchange_rates.R’
checkRd: (-1) shinyjs-defunct.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shinyjs-defunct.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shinyjs-defunct.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) store_googledrive.Rd:19: Lost braces; missing escapes or markup?
    19 | See the {gargle} package to manage authentication, and especially
       |         ^
checkRd: (-1) store_googledrive.Rd:20: Lost braces; missing escapes or markup?
    20 | \href{https://gargle.r-lib.org/articles/articles/managing-tokens-securely.html}{this vignette from {gargle} package} to manage the process.
       |                                                                                                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lottie_addEventListener.Rd’ ‘lottie_button.Rd’
    ‘lottie_removeEventListener.Rd’
checkRd: (-1) custom-labels.Rd:7: Lost braces; missing escapes or markup?
     7 | \title{Modify {shinymanager} labels to use custom text}
       |               ^
checkRd: (-1) use_language.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Use {shinymanager} labels}
       |            ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fabs.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  connect_sqlite.Rd: RSQLite, DBI
  create_schema.Rd: RSQLite, DBI
  db.read_table.Rd: DBI, tibble
  db.write_table.Rd: DBI
  shinynotes.Rd: DBI
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) shiny_pivot_table.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) shiny_pivot_table.Rd:64: Lost braces in \itemize; meant \describe ?
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) addValidationSuffix.Rd:13: Lost braces; missing escapes or markup?
    13 | A string `"{tagId}-shinyreforms-validation"`.
       |            ^
Found the following files/directories:
  ‘.shiny_run’ ‘shinyShortcut.desktop’
checkRd: (-1) add_class.Rd:18: Lost braces; missing escapes or markup?
    18 | Custom function for adding a CSS class used in {shinysurveys}.
       |                                                ^
checkRd: (-1) disable_element.Rd:16: Lost braces; missing escapes or markup?
    16 | Custom function for disabling an HTML element in {shinysurveys}.
       |                                                  ^
checkRd: (-1) enable_element.Rd:16: Lost braces; missing escapes or markup?
    16 | Custom function for disabling an HTML element in {shinysurveys}.
       |                                                  ^
checkRd: (-1) extendInputType.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{extension}{A shiny input type not natively supported by {shinysurveys}. See the examples section for more information.}
       |                                                               ^
checkRd: (-1) getSurveyData.Rd:15: Lost braces; missing escapes or markup?
    15 | default, and the built-in {shinysurveys} userID will be used.}
       |                           ^
checkRd: (-1) radioMatrixInput.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{...}{Additional arguments specific to {shinysurveys} required questions.}
       |                                             ^
checkRd: (-1) remove_class.Rd:18: Lost braces; missing escapes or markup?
    18 | Custom function for removing a CSS class used in {shinysurveys}.
       |                                                  ^
checkRd: (-1) toggle_element.Rd:18: Lost braces; missing escapes or markup?
    18 | Custom function for toggling enable/disable state of HTML element in {shinysurveys}.
       |                                                                      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  numberInput.Rd: validateCssUnit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app_server.R’ ‘function.R’
checkRd: (-1) run_shinytitle_example.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) run_shinytitle_example.Rd:19: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘slimSelectInput.Rd’
checkRd: (-1) MrBayes.Rd:24: Lost braces
    24 | \item{contype}{A character string; the type of consensus tree calculated from the posterior distribution of trees}{either "halfcompat" (majority-rule consensus tree) or "allcombat" (strict consensus tree)}
       |                                                                                                                   ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ShopifyShop.Rd: R6
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  shrinkDTVP.Rd: stochvol, svsample
  shrinkTVP.Rd: stochvol, svsample
  simTVP.Rd: svsim
  updateTVP.Rd: stochvol, svsample
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) shutterplot.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.'
       |                       ^
checkRd: (-1) pop.dist.Rd:41: Lost braces; missing escapes or markup?
    41 | where \emph{dist(i,j)} represents the distance between populations \emph{i} and \emph{j}, \emph{m} and \emph{n} are the number of sequences in populations \emph{i} and \emph{j}, respectively, and \emph{dist(H_{ki},H_{lj})} is the distance between the \emph{k-th} sequence found in population \emph{i} and the \emph{l-th} sequence found in population \emph{j}. 
       |                                                                                                                                                                                                                  ^
checkRd: (-1) pop.dist.Rd:41: Lost braces; missing escapes or markup?
    41 | where \emph{dist(i,j)} represents the distance between populations \emph{i} and \emph{j}, \emph{m} and \emph{n} are the number of sequences in populations \emph{i} and \emph{j}, respectively, and \emph{dist(H_{ki},H_{lj})} is the distance between the \emph{k-th} sequence found in population \emph{i} and the \emph{l-th} sequence found in population \emph{j}. 
       |                                                                                                                                                                                                                         ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mutation.network.Rd: plot.network
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) drr.Rd:36: Lost braces; missing escapes or markup?
    36 |   \code{drr} {is Rosin - Rammler probability density function}\cr
       |              ^
checkRd: (-1) drr.Rd:37: Lost braces; missing escapes or markup?
    37 |   \code{urr} {is Rosin - Rammler cumulative distribution function (CDF) representing undersize mass fraction}\cr
       |              ^
checkRd: (-1) drr.Rd:38: Lost braces
    38 |   \code{orr} {is Rosin - Rammler complementary CDF representing oversize mass fraction ie. relative remainder on the sieve with the mesh size \code{x}}\cr
       |              ^
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘show_group_enrichment.R’
checkRd: (-1) add_k_mer_state.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add_k_mer_state.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) duration_viterbi.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  survivalForest.Rd: forestplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) sig.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sig_report.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
Found the following files/directories:
  ‘ExportFigtree1.tre’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘p_sie.R’ ‘prp.R’ ‘siie.R’
checkRd: (-1) siland.Rd:64: Lost braces; missing escapes or markup?
    64 | \item x_{l,i}, local variable l,
       |         ^
checkRd: (-1) siland.Rd:70: Lost braces; missing escapes or markup?
    70 | \item d_{r,i} the distance between the center of pixel r and the observation at site i.
       |         ^
checkRd: (-1) inlandwaters.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) inlandwaters.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim_Y_Binary_X.Rd:51: Lost braces
    51 |     \item \code{dist = "binomial"} is drawn from eqn{Bin(XB, XB(1-XB))}
       |                                                     ^
File ‘Sim.DiffProc/libs/Sim.DiffProc.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  msq.Rd: rstream
  simEd-package.Rd: rstream
  ssq.Rd: rstream
  ssqvis.Rd: rstream
  vbeta.Rd: rstream, rstream.sample
  vbinom.Rd: rstream, rstream.sample
  vcauchy.Rd: rstream, rstream.sample
  vchisq.Rd: rstream, rstream.sample
  vexp.Rd: rstream, rstream.sample
  vfd.Rd: rstream, rstream.sample
  vgamma.Rd: rstream, rstream.sample
  vgeom.Rd: rstream, rstream.sample
  vlnorm.Rd: rstream, rstream.sample
  vlogis.Rd: rstream, rstream.sample
  vnbinom.Rd: rstream, rstream.sample
  vnorm.Rd: rstream, rstream.sample
  vpois.Rd: rstream, rstream.sample
  vt.Rd: rstream, rstream.sample
  vunif.Rd: rstream, rstream.sample
  vweibull.Rd: rstream, rstream.sample
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) create_modelDF.Rd:25-38: Lost braces
    25 | convert_xlsx_to_csv<-function(xlsx_file){
       |                                         ^
checkRd: (-1) create_modelDF.Rd:33-36: Lost braces
    33 |   for (i in Sheetnames) {
       |                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘call_api.R’ ‘sfa_load__shares_outstanding.R’ ‘sfa_load_companies.R’
    ‘sfa_load_shareprices.R’ ‘sfa_load_statement.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sfa_load_common_shares_outstanding.Rd: data.table
  sfa_load_shareprices.Rd: data.table
  sfa_load_statements.Rd: data.table
  sfa_load_weighted_shares_outstanding.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following files/directories:
  ‘database.csv’ ‘output.csv’ ‘output_clst.csv’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bootstrap-projection.R’ ‘bootstrap_CIs.Rd’ ‘bundle_sim.R’
    ‘calc_coverage.R’ ‘calc_rejection.R’ ‘extrapolate_coverage.Rd’
    ‘utilities.R’
checkRd: (-1) internal.statistics.one.lm.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) internal.statistics.one.lm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.logistic.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.prop2.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simstudy.t2.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.trajectory.Rd: grViz, render_graph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  simSBS.Rd: BSgenome
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following files/directories:
  ‘res_mutation.tsv’ ‘res_mutationCounts.txt’
  ‘res_processContribution.txt’ ‘res_processes.txt’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘si_calculate.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘anon.R’ ‘anonymise.Rd’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    simpleCache [0.0.1]
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘markdown_block.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  residuals.simplexreg.Rd: simplex
  simplexreg.Rd: simplex
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘glimpse_na.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  print.powerSim.Rd: binom.confint
  simrOptions.Rd: Anova
  tests.Rd: summary.merMod, anova.merMod, Anova
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  device.Rd: pdf.end
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'::' or ':::' import not declared from: ‘codetools’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘addCorGen.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  land.Rd: getData
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++14: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Version (Date)
checkRd: (-1) make_one_dataset.Rd:67: Lost braces; missing escapes or markup?
    67 |  \code{within.SD} to be extremely small (e.g., $1 * 10^{-7}$) and all corresponding correlations in matrix
       |                                                        ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stat_hollow_contour.Rd: aes, aes_, borders, layer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) add_bold.Rd:15: Lost braces; missing escapes or markup?
    15 | For example, in latex it would take "2" and output "{\\bf 2}"; in html
       |                                                     ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate-effect-sizes.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘debug.R’
checkRd: (-1) sim.bdh.age.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.age.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.gsa.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:67: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sim.bdh.taxa.ssa.Rd:70: Lost braces in \itemize; meant \describe ?
Problems with news in ‘NEWS.md’:
No news entries found.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘predict.sitar.R’
checkRd: (-1) sitar-package.Rd:27: Lost braces; missing escapes or markup?
    27 | individual curves, adjusted for {abcd} to lie on top of (i.e. be
       |                                 ^
checkRd: (-1) sitar.Rd:110: Lost braces; missing escapes or markup?
   110 | \code{\link{nlme}}) (default {nlmeControl(returnObject = TRUE)}).}
       |                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  anova.sitar.Rd: anova.lme
  sitar.Rd: nlme, nlmeObject
  summary.sitar.Rd: summary.lme, lmeObject
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) rawCCD.Rd:20: Lost braces; missing escapes or markup?
    20 |   \item{distr.type}{school district type (constructed for illustration purposes; (values={"A", "B", "C", "D"})).}
       |                                                                                          ^
checkRd: (-1) selectMatch.Rd:61: Lost braces; missing escapes or markup?
    61 | \item{replacementUnitsFilename}{character; csv filename for saving {unit:replacement} directory when writeOut == TRUE; default = "replacementUnits.csv"}
       |                                                                    ^
checkRd: (-1) selectMatch.Rd:63: Lost braces; missing escapes or markup?
    63 | \item{subUnitTableFilename}{character; csv filename for saving {unit:replacement} directory when writeOut == TRUE; default = "subUnitTable.csv"}
       |                                                                ^
checkRd: (-1) selectMatch.Rd:66: Lost braces; missing escapes or markup?
    66 | list with: 1) table of the form: {selected unit i: (unit i replacements)}, 2) table of the form: {potential unit i:(unit i sub-units)}, 3) balance diagnostics.
       |                                  ^
checkRd: (-1) selectMatch.Rd:66: Lost braces; missing escapes or markup?
    66 | list with: 1) table of the form: {selected unit i: (unit i replacements)}, 2) table of the form: {potential unit i:(unit i sub-units)}, 3) balance diagnostics.
       |                                                                                                  ^
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) ss.cc.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ss.ci.Rd:26: Lost braces
    26 | \item{alpha}{The eqn{\\alpha} error used to compute the \eqn{100*(1-\\alpha)\%} confidence interval}
       |                     ^
checkRd: (-1) ss.rr.Rd:84: Lost braces; missing escapes or markup?
    84 | $MS_{factor}/MS_{interaction}$, e.g. in appendix A of AIAG MSA manual, 
       |     ^
checkRd: (-1) ss.rr.Rd:84: Lost braces; missing escapes or markup?
    84 | $MS_{factor}/MS_{interaction}$, e.g. in appendix A of AIAG MSA manual, 
       |                 ^
checkRd: (-1) ss.rr.Rd:87: Lost braces; missing escapes or markup?
    87 | F test is performed as $MS_{factor}/MS_{equipment}$, i.e., repeatability.
       |                            ^
checkRd: (-1) ss.rr.Rd:87: Lost braces; missing escapes or markup?
    87 | F test is performed as $MS_{factor}/MS_{equipment}$, i.e., repeatability.
       |                                        ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘SiZer.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  to_value.Rd: set_labels
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘prop.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ext-annotate_expr.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  knit_print.Rd: collapse
  print.Rd: tbl_format_setup
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sklars.omega.Rd: hjkb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_ci_bounds_mc_power.R’ ‘calculate_gefficiency.R’
    ‘calculate_power_curves.Rd’ ‘eval_design_custom_mc.R’
    ‘eval_design_survival_mc.R’ ‘skprGUI.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) outliers.hdts.Rd:44: Lost braces; missing escapes or markup?
    44 |   \item I.cov.rob - The matrix (V'GnV)^{-1} used to compute the statistics to detect the idiosyncratic outliers.
       |                                        ^
checkRd: (-1) nba_team_logo.Rd:22: Lost braces; missing escapes or markup?
    22 | https://i.cdn.turner.com/nba/nba/.element/img/4.0/global/logos/512x512/bg.white/svg/{team_short_name}.svg
       |                                                                                     ^
File ‘slider/libs/slider.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  slideView.Rd: levelplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) fit_slim.Rd:24: Lost braces; missing escapes or markup?
    24 | sum(x' V^{-1} (y - x beta)) = 0 as the covariance V tends from V[, , 1] +
       |          ^
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) slp-package.Rd:38: Escaped LaTeX specials: \&
checkRd: (-1) cities_lon_lat.Rd:6: Lost braces
     6 | A subset of world.cities{maps}. Extracted in order to shink number of dependencies. 
       |                         ^
Problems with news in ‘NEWS.md’:
No news entries found.
Malformed Title field: should not end in a period.
checkRd: (-1) customerRetentionDemographics.Rd:10: Escaped LaTeX specials: \$
checkRd: (-1) customerRetentionDemographics.Rd:11: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:12: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:13: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) customerRetentionDemographics.Rd:15: Escaped LaTeX specials: \$
File ‘smcryptoR/libs/smcryptoR.so’:
  Found ‘_exit’, possibly from ‘_exit’ (C)
    Object: ‘smcrypto/target/release/libsmcrypto.a’
  Found ‘abort’, possibly from ‘abort’ (C)
    Object: ‘smcrypto/target/release/libsmcrypto.a’
  Found ‘exit’, possibly from ‘exit’ (C)
    Object: ‘smcrypto/target/release/libsmcrypto.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) trlong.Rd:17: Lost braces
    17 |     \item{\code{resp}}{a factor indicating the transport mode choice, and \code{B} denotes taking the bus, code{D} denotes driving one's own vehicle, \code{F} denotes getting a ride with a friend, \code{O} denotes other, and \code{W} denotes walking}
       |                                                                                                                ^
checkRd: (-1) smdocker_log.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:35-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) smdocker_log.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                  ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                            ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                          ^
checkRd: (-1) SimModel1.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{beta}{the \eqn{\beta} matrix, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},...}
       |                                                                                    ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                              ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                        ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                      ^
checkRd: (-1) SimModel2.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{beta_0}{the initial beta, iqx+ip*ik, y_{1,t-1},y_{1,t-2},...,y_{2,t-1},y_{2,t-2},....}
       |                                                                                ^
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
checkRd: (-1) SMMA.Rd:115: Lost braces
   115 |  is the empirical explained variance from \cite{Meinshausen and B{u}hlmann, 2015}.  See \cite{Lund et al., 2020} for more details and references.
       |                                                                  ^
checkRd: (-1) SMMA.Rd:170: Lost braces
   170 | Meinshausen, N and P. B{u}hlmann (2015). Maximin effects in inhomogeneous large-scale data.
       |                        ^
Specified C++11: please drop specification unless essential
checkRd: (-1) estimMk.Rd:44: Lost braces; missing escapes or markup?
    44 | estimMk returns the transition probability matrix of size (S^{k})xS (with S = length(E)) 
       |                                                              ^
Specified C++11: please drop specification unless essential
checkRd: (-1) getKernel.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getKernel.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getGlobalOptimum.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getGlobalOptimum.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getGlobalOptimum.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getLocalOptimum.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getLocalOptimum.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) getLocalOptimum.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) smoof_function.Rd:10: Lost braces
    10 | or code{smoof_multi_objective_function}. Both single- and multi-objective functions share the following attributes.
       |        ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  smoother.Rd: TTR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.idm.Rd: SmartControl
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_paths.Rd: facet_wrap
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  funcen.Rd: kde
  smoothROCtime-package.Rd: ks
  stRoc.Rd: kde
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘lseq’
Found the following files/directories:
  ‘my_new_social_media_plot.png’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  evol_auc.Rd: ggplot
  explore_table.Rd: flextable
  probs_pred.Rd: ggplot
  sMSROC_plot.Rd: plotROC
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) SnakesAndLaddersGame.Rd:25: Lost braces; missing escapes or markup?
    25 | {Hector Haffenden} {haffendenh@cardiff.ac.uk}
       |                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sk.R’ ‘sk_export.R’ ‘sk_index.R’ ‘sk_pars.R’ ‘sk_plot.R’
    ‘sk_plot.Rd’ ‘sk_sub.Rd’ ‘sk_var.Rd’ ‘sk_var_mult.Rd’
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                  ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                           ^
checkRd: (-1) sk_GLS.Rd:34: Lost braces; missing escapes or markup?
    34 | The GLS solution is: b = ( X^T V^{-1} X )^{-1} X^T V^{-1} z,
       |                                                      ^
checkRd: (-1) sk_GLS.Rd:40: Lost braces; missing escapes or markup?
    40 | Operations with V^{-1} are computed using the factorization \code{fac} (see \code{sk_var}), or
       |                   ^
checkRd: (-1) sk_LL.Rd:37: Lost braces; missing escapes or markup?
    37 | \code{quad_form} is z^T V^{-1} z, for the observed response vector z, which is constructed
       |                           ^
checkRd: (-1) sk_var.Rd:41: Lost braces; missing escapes or markup?
    41 | returns the quadratic form X^T V^{-1} X.
       |                                  ^
checkRd: (-1) sk_var.Rd:33: Lost braces; missing escapes or markup?
    33 | either matrix \code{V}, or X^T V^{-1} X, or a factorization ('chol' or 'eigen')
       |                                  ^
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
checkRd: (-1) knockoffGenotypes.Rd:32: Lost braces; missing escapes or markup?
    32 | This function efficiently constructs group-knockoffs of {0,1,2} variables distributed
       |                                                         ^
checkRd: (-1) knockoffGenotypes.Rd:11: Lost braces; missing escapes or markup?
    11 | \item{X}{a {0,1,2} matrix of size n-by-p containing the original variables.}
       |            ^
checkRd: (-1) knockoffGenotypes.Rd:29: Lost braces; missing escapes or markup?
    29 | A {0,1,2} matrix of size n-by-p containing the knockoff variables.
       |   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gtable_ld_associations_combine.Rd’ ‘gtable_ld_grobs.Rd’
checkRd: (-1) maize.line.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) maize.line.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) maize.line.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) maize.line.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) raw.data.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{call.rate}{\code{numeric}. Threshold for removing marker by missing genotype rate. SNP with \code{call rate} below threshold are removed from dataset. Must be between {0, 1}}
       |                                                                                                                                                                              ^
checkRd: (-1) raw.data.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{maf}{Threshold for removing SNP by minor allele frequency. Must be between {0, 1}}
       |                                                                                  ^
checkRd: (-1) plot.selm.Rd:101: Lost braces
   101 | data. Default value for code{which} is \code{2:4} if \code{p>1}, otherwise
       |                             ^
Found the following calls to attach():
File ‘SOAR/R/SOAR.R’:
  attach(NULL, pos, basename(directory))
See section ‘Good practice’ in ‘?attach’.
Found the following files/directories:
  ‘.R_Test’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  createSaturated.Rd: FrF2, DoE.base
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) map.active.Rd:82: Lost braces
    82 | \link{guides}, \link{theme} and link{guide_legend} functions from the
       |                                     ^
checkRd: (-1) map.add.Rd:99: Lost braces
    99 | \link{guides}, \link{theme} and link{guide_legend} functions from the
       |                                     ^
checkRd: (-1) map.csa.mca.Rd:35: Lost braces
    35 | \link{soc.csa}, \link{map.csa.all}, link{map.csa.mca.array}
       |                                         ^
checkRd: (-1) map.ctr.Rd:85: Lost braces
    85 | \link{guides}, \link{theme} and link{guide_legend} functions from the
       |                                     ^
checkRd: (-1) map.ind.Rd:80: Lost braces
    80 | \link{guides}, \link{theme} and link{guide_legend} functions from the
       |                                     ^
checkRd: (-1) map.mod.Rd:82: Lost braces
    82 | \link{guides}, \link{theme} and link{guide_legend} functions from the
       |                                     ^
checkRd: (-1) map.sup.Rd:82: Lost braces
    82 | \link{guides}, \link{theme} and link{guide_legend} functions from the
       |                                     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  map.active.Rd: geom_text_repel, geom_label_repel, guides, theme
  map.add.Rd: geom_text_repel, geom_label_repel, guides, theme
  map.csa.mca.Rd: geom_smooth
  map.ctr.Rd: geom_text_repel, geom_label_repel, guides, theme
  map.ind.Rd: geom_text_repel, geom_label_repel, guides, theme
  map.mod.Rd: geom_text_repel, geom_label_repel, guides, theme
  map.path.Rd: geom_path, geom_point, geom_text
  map.select.Rd: geom_text_repel, geom_label_repel, guides, theme,
    guide_legend
  map.sup.Rd: geom_text_repel, geom_label_repel, guides, theme
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘PowerRelation.R’ ‘SocialRanking.R’ ‘copeland.R’ ‘doRanking.Rd’
    ‘elementLookup.Rd’ ‘generator.R’ ‘makePowerRelationMonotonic.R’
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                          ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                        ^
checkRd: (-1) preg2.Rd:8: Lost braces
     8 | An object of class \\code{tbl_df} (inherits from \\code{tbl}, \\code{data.frame}) with 2 rows and 4 columns.
       |                                                                     ^
checkRd: (-1) s_soda_pred.Rd:8: Lost braces; missing escapes or markup?
     8 | S-SODA assumes within each slice the X vector follow multivariate normal distribution. This function predicts the response y by reverting the P(X | slice(y)) to P(slice(y) | X), and estimates the E(y|X) as sum_{h} E(y | slice(y)=h, X) P (slice(y)=h | X)
       |                                                                                                                                                                                                                   ^
checkRd: (-1) db_compact.Rd:41: Lost braces; missing escapes or markup?
    41 | database structure will be set to true. See GET /{db}. You can also obtain a list of
       |                                                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Incomplete-class.Rd: dgCMatrix-class, CsparseMatrix-class,
    dsparseMatrix-class, generalMatrix-class, dMatrix-class,
    sparseMatrix-class, compMatrix-class, Matrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  soilhypfit_control_fit_wrc_hcc.Rd: nloptr
  soilhypfit_fit_wrc_hcc.Rd: nloptr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) llwrPTF.Rd:7: Escaped LaTeX specials: \&
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘meteoReaders.R’
checkRd: (-1) solr_mlt.Rd:70: Lost braces; missing escapes or markup?
    70 | TermVector DEFAULT_FIELD_NAMES = new String[] {"contents"}
       |                                               ^
checkRd: (-1) solve_pH_from_AT.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) solve_pH_from_AT.Rd:93: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  superClass.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘RColorBrewer’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  somsp.Rd: kohonen
  somspa.Rd: kohonen, som
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘soundSpeed.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘objects.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  graphsoptd.mae.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) spe.Rd:101: Lost braces
   101 | code{spe} command; (4) \code{alpha} stores significance level as in
       |     ^
checkRd: (-1) load_sorvi_data.Rd:23: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘SouthPark_Script_Data.Rd’ ‘app_server.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SpaDES.core-package.Rd: copy, equalExtent, getColors,
    divergentColors, layerNames, numLayers, Plot, clearPlot,
    clickValues, clickExtent, clickCoordinates, dev, newPlot, rePlot
  depsLoadOrder.Rd: igraph
  downloadData.Rd: prepInputs
  emptyEventList.Rd: data.table
  moduleDiagram.Rd: igraph
  moduleGraph.Rd: igraph
  simList-accessors-events.Rd: data.table
  simList-class.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  corMatern.Rd: glmmPQL, lme
  spaMM_boot.Rd: boot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘spaMM/libs/spaMM.so’:
  Found non-API call to R: ‘PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) sdf_unnest.Rd:20: Lost braces
    20 | \code{a1, a2, a3}, then code{sdf_explode(df, a)} will produce output with each record replicated
       |                             ^
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xgboost_classifier.Rd: ft_r_formula
  xgboost_regressor.Rd: ft_r_formula, ml_save
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sparrpowR-package.Rd: sparr, spatstat.random, spatstat.geom, terra,
    doFuture, doRNG
  spatial_data.Rd: spatstat.random
  spatial_power.Rd: spatstat.random
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ElasticNet_HJBiplot.Rd: spca
  Plot_Biplot.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
checkRd: (-1) Coord.to.Pointers.Rd:54: Lost braces; missing escapes or markup?
    54 | \item{triangle=TRUE}{Input \code{rows} and {cols} represent lower
       |                                            ^
checkRd: (-1) Coord.to.Pointers.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{triangle=FALSE}{Input \code{rows} and {cols} represent a full
       |                                             ^
checkRd: (-1) cholsolveAQinvAT.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Solve the equation X = AQ^{-1}t(A) under permutations}
       |                                  ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |    ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |             ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                      ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                   ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                            ^
checkRd: (-1) mu_calc.Rd:32: Lost braces; missing escapes or markup?
    32 | mu_{d} | mu_{d} < mu_{d-1} and mu_{d} | mu_{d} > mu_{d-1} respecitively.
       |                                                     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  model_parallel.Rd: future_lapply
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) plot.sparsereg.Rd:22-23: Lost braces
    22 | \env{main1, main2, main3}{
       |                          ^
checkRd: (-1) plot.sparsereg.Rd:25-27: Lost braces
    25 | \env{xlabel}{
       |             ^
checkRd: (-1) plot.sparsereg.Rd:29-31: Lost braces
    29 | \env{plot.one}{
       |               ^
checkRd: (-1) summary.sparsereg.Rd:27-29: Lost braces
    27 | \env{interval}{
       |               ^
checkRd: (-1) summary.sparsereg.Rd:31-33: Lost braces
    31 | \env{ci}{
       |         ^
checkRd: (-1) summary.sparsereg.Rd:35-37: Lost braces
    35 | \env{order}{
       |            ^
checkRd: (-1) summary.sparsereg.Rd:39-41: Lost braces
    39 | \env{normal}{
       |             ^
checkRd: (-1) summary.sparsereg.Rd:43-45: Lost braces
    43 | \env{select}{
       |             ^
checkRd: (-1) summary.sparsereg.Rd:47-48: Lost braces
    47 | \env{printit}{
       |              ^
checkRd: (-1) summary.sparsereg.Rd:50-52: Lost braces
    50 | \env{stage}{
       |            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sparsesvd.Rd: dgCMatrix-class, sparseMatrix
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sim_functional_process.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dnnModel.R’ ‘interGradientsDL.R’ ‘loadData.R’ ‘spatialClustering.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  FEMdensity.Rd: basisfd
  smooth.FEM.basis.Rd: lambda2df, lambda2gcv, df2lambda
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) distSG.Rd:40: Lost braces; missing escapes or markup?
    40 |   matrix and weight matrix (plus a matrix with {eID} identifiers
       |                                                ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘kinetic_ising_ensemble.R’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  grf.Rd: ranger
  grf.bw.Rd: ranger
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rasterReilly.Rd: ratify
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘highest_concentration.R’ ‘plot_points.R’
Specified C++14: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SpatDensReg.Rd: Surv
  SuperSurvRegBayes.Rd: Surv
  anovaDDP.Rd: Surv
  cox.snell.survregbayes.Rd: Surv
  frailtyGAFT.Rd: Surv, rdist
  indeptCoxph.Rd: Surv
  spCopulaCoxph.Rd: Surv
  spCopulaDDP.Rd: Surv
  survregbayes.Rd: Surv, rdist, rdist.earth
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  surfacemodel.Rd: rpart.control, rpart
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) NEWS.Rd:137: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CompactStratification-class.Rd: SpatialPixels-class,
    SpatialPoints-class, SpatialPixelsDataFrame-class
  CompactStratificationEqualArea-class.Rd: SpatialPixels-class,
    SpatialPoints-class
  CompactStratificationPriorPoints-class.Rd: SpatialPoints-class,
    SpatialPixels-class
  SamplingPattern-class.Rd: SpatialPoints-class
  SamplingPatternCentroids-class.Rd: SpatialPoints-class
  SamplingPatternPriorPoints-class.Rd: SpatialPoints-class
  SamplingPatternPurposive-class.Rd: SpatialPoints-class
  SamplingPatternRandom-class.Rd: SpatialPoints-class
  SamplingPatternRandomComposite-class.Rd: SpatialPoints-class,
    SpatialPointsDataFrame-class
  SamplingPatternRandomSamplingUnits-class.Rd: SpatialPoints-class
  stratify-methods.Rd: SpatialPixels-class, SpatialGrid-class,
    SpatialPolygons-class, SpatialPoints-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘federov.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forecast.spdur.Rd: forecast
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) findRef.Rd:39: Lost braces
    39 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
checkRd: (-1) hClustAlign.Rd:70: Lost braces
    70 | Vu TN, Valkenborg D, Smets K, Verwaest KA, Dommisse R, Lemi\`{e}re F, Verschoren A, Goethals B, Laukens K. (2011) An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinformatics. 2011 Oct 20;12:405.
       |                                                              ^
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Roadmap of specklestar package
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  speck.Rd: Ckmeans.1d.dp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) FitAkdParameters.Rd:23: Lost braces; missing escapes or markup?
    23 |       p(y|ens) = 1 / K * sum {dnorm(y, z.i, s)} \cr
       |                              ^
checkRd: (-1) australia.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) australia.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) australia.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) australia.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) australia.Rd:19: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  continuum_removal.Rd: baseline
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) image.plot.Rd:78: Escaped LaTeX specials: \$
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘analysis_age.R’ ‘analysis_alpha.R’ ‘analysis_helpers.R’
    ‘analysis_helpers_table.R’ ‘analysis_photo.R’ ‘analysis_radio.R’
    ‘analysis_setup.R’ ‘export_Output_Settings.R’ ‘export_download.R’
    ‘export_helpers.R’ ‘export_helpers_plot.R’ ‘export_helpers_table.R’
    ‘import_examples.R’ ‘import_examples_box.R’
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘innprod.R’ ‘utils.R’
checkRd: (-1) speech_recompiler.Rd:25: Lost braces; missing escapes or markup?
    25 | The default compilation is that of \ code {speech_build (., compiler = TRUE}).
       |                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘import_qiime2_tax_table.R’ ‘import_sintax_tax_table.R’
Found the following files/directories:
  ‘.neig’
Specified C++11: please drop specification unless essential
checkRd: (-1) cylinder.counts.Rd:61-62: Lost braces
    61 | nucleotide, so that \code{a.c} represents the set {\code{aac}, \code{acc}, 
       |                                                   ^
checkRd: (-1) adaptIntegrateSpherePolar.Rd:14: Lost braces
    14 | code{adaptIntegrateBallPolar()} will likely miss these abrupt changes and give
       |     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  F_from_f.Rd: tang-norm-decomp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bestCloseMatch.Rd: dist.dna
  localMinima.Rd: dist.dna
  monophyly.Rd: prop.part, root, boot.phylo
  monophylyBoot.Rd: prop.part, root, boot.phylo
  nearNeighbour.Rd: dist.dna
  polyBalance.Rd: balance
  read.GB.Rd: read.GenBank
  rosenberg.Rd: nodelabels
  slideAnalyses.Rd: dist.dna
  spider-package.Rd: ape-package, pegas-package
  tajima.K.Rd: dist.dna
  tclust.Rd: dist.dna
  threshID.Rd: dist.dna
  tree.comp.Rd: dist.topo, node.depth
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following files/directories:
  ‘AlphaGA_3.txt’ ‘AlphaML_3.txt’ ‘BetaGA_3.txt’ ‘BetaML_3.txt’
  ‘Performance_GA_ML_ 3 .pdf’ ‘SPIGA_3Pmon.Pm_St1.pdf’
  ‘SPIGA_3Pmon.Pm_St2.pdf’ ‘SPI_AG_3.txt’ ‘SPI_ML_3.txt’
  ‘SPI_ML_3Pm_St1.pdf’ ‘SPI_ML_3Pm_St2.pdf’ ‘SPI_ML_3Pm_St3.pdf’
  ‘SPI_ML_3Pm_St4.pdf’ ‘SPI_PARAM_3.txt’ ‘SPI_PARAM_3Pm_St1.pdf’
  ‘SPI_PARAM_3Pm_St2.pdf’ ‘SPI_PARAM_3Pm_St3.pdf’
  ‘SPI_PARAM_3Pm_St4.pdf’
checkRd: (-1) speedtestdata.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) speedtestdata.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ds_aat.Rd:16: Lost braces
    16 | \doi{10.1111/add.14071}{Boffo et al., 2018}. Participants were presented stimuli from a "test"
       |                        ^
checkRd: (-1) ds_gng.Rd:16: Lost braces
    16 | described in detail in \doi{10.1016/j.tate.2019.102887}{Hedge, Powell, and Sumner (2018)}. 
       |                                                        ^
checkRd: (-1) ds_iat.Rd:19: Lost braces
    19 | \doi{10.1016/j.tate.2019.102887}{Abacioglu and colleagues (2019)}. 
       |                                 ^
checkRd: (-1) ds_rapi.Rd:15: Lost braces
    15 | problems within the last year (\doi{https://doi.org/10.15288/jsa.1989.50.30}{White & Labouvie, 1989}).
       |                                                                             ^
checkRd: (-1) ds_sst.Rd:17: Lost braces
    17 | described in detail in \doi{10.1016/j.tate.2019.102887}{Hedge, Powell, and Sumner (2018)}. 
       |                                                        ^
checkRd: (-1) ds_vpt.Rd:22: Lost braces
    22 | \doi{10.1111/acer.12853}{(Pronk, Deursen, Beraha, Larsen, & Wiers, 2015)}.
       |                         ^
checkRd: (-1) splithalfr.Rd:15: Lost braces
    15 |   \item \code{vignette("rapi_sum")} Sum-score for data of the 23-item version of the Rutgers Alcohol Problem Index (\doi{https://doi.org/10.15288/jsa.1989.50.30}{White & Labouvie, 1989})
       |                                                                                                                                                                  ^
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Feature Changes
File ‘splusTimeDate/libs/splusTimeDate.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘addlearn_local.R’
checkRd: (-1) gbmidwcv.Rd:118: Lost braces
   118 | rfcv{randomForest} and gbm
       |     ^
checkRd: (-1) gbmokgbmidwcv.Rd:108: Lost braces
   108 | variable and anisotropy parameters. see notes vgm{gstat} for details.
       |                                                  ^
Specified C++11: please drop specification unless essential
checkRd: (-1) spnn-package.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) spnn-package.Rd:18: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as.idigbio.Rd: idig_search_records
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    updates of 10th May 2021
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  onNextInput.Rd: observeEvent
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) impactspsur.Rd:42: Lost braces; missing escapes or markup?
    42 | and a matching \code{Qres} list attribute if {Q} was given.
       |                                              ^
checkRd: (-1) spsur3sls.Rd:158: Lost braces; missing escapes or markup?
   158 |   the matrix of regressors, of order \emph{(Nxp_{g})}. Moreover, 
       |                                                 ^
checkRd: (-1) spsurgs3sls.Rd:67: Lost braces; missing escapes or markup?
    67 | \item{het}{default {FALSE}: if {TRUE} uses the methods 
       |                    ^
checkRd: (-1) spsurgs3sls.Rd:67: Lost braces; missing escapes or markup?
    67 | \item{het}{default {FALSE}: if {TRUE} uses the methods 
       |                                ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  impactspsur.Rd: impacts
  spsur-package.Rd: impacts
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Running examples in ‘spsurv-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bppo
> ### Title: Bernstein Polynomial Based Proportional Odds Model
> ### Aliases: bppo
> 
> ### ** Examples
> 
> 
> library("spsurv")
> data("veteran")
Warning in data("veteran") : data set ‘veteran’ not found
> 
> fit <- bppo(Surv(time, status) ~ karno + celltype,
+ data = veteran)
Error in optimHess(theta, fn, gr, control = list(fnscale = -1)) : 
  non-finite value supplied by optim
Calls: bppo ... spbp.mle -> <Anonymous> -> <Anonymous> -> .local -> optimHess
Execution halted
checkRd: (-1) spsOption.Rd:29: Lost braces; missing escapes or markup?
    29 | Some functions in {spsUtil}, {spsComps} and {systempPipeShiny} will behave
       |                   ^
checkRd: (-1) spsOption.Rd:29: Lost braces; missing escapes or markup?
    29 | Some functions in {spsUtil}, {spsComps} and {systempPipeShiny} will behave
       |                              ^
checkRd: (-1) spsOption.Rd:29: Lost braces; missing escapes or markup?
    29 | Some functions in {spsUtil}, {spsComps} and {systempPipeShiny} will behave
       |                                             ^
'library' or 'require' calls not declared from:
  ‘MBA’ ‘akima’ ‘colorspace’ ‘fields’ ‘maps’
checkRd: (-1) vol.m3.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vol.m3.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vol.m3.Rd:23: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fitDistances.Rd: fitdistr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.Rd: viridis
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) sqldf.Rd:248: Lost braces
   248 | and code{port} arguments of sqldf.
       |         ^
checkRd: (-1) fpiter.Rd:55-58: Lost braces
    55 |     \code{tol}{ - a small, positive scalar that determines when iterations 
       |               ^
checkRd: (-1) fpiter.Rd:60-61: Lost braces
    60 |     \code{maxiter}{ - an integer denoting the maximum limit on the number of 
       |                   ^
checkRd: (-1) fpiter.Rd:63-65: Lost braces
    63 |     \code{trace}{ - a logical variable denoting whether some of the intermediate 
       |                 ^
checkRd: (-1) fpiter.Rd:67-70: Lost braces
    67 |     \code{intermed}}{ - a logical variable denoting whether the intermediate 
       |                     ^
checkRd: (-1) squarem.Rd:134: Lost braces
   134 |       along with the corresponding log-likelihood value.  When the code{objfn} is not specified it will return the fixed-point residual instead of the objective function values. 
       |                                                                        ^
'library' or 'require' call not declared from: ‘interval’
checkRd: (-1) squidR.Rd:83: Lost braces; missing escapes or markup?
    83 |   \item \code{X1_sto_shared} (default \code{TRUE}): {logical}; if \code{TRUE}, the stochastic environmental effect included in the environmental effect x1 will be shared between individuals. If \code{FALSE}, each individual will experience a different stochastic environmental effect x1 (i.e. a new stochastic environmental effect is generated for each individual).
       |                                                     ^
checkRd: (-1) plot.SRCS.Rd:48-50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:52-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:56-58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:59-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:61-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:63-64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:74-75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:77-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:80-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:87-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:143-144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:145: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:146-148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.SRCS.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ssaBSS-package.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sscor.Rd:33: Lost braces; missing escapes or markup?
    33 | Otherwise, if {pdim=TRUE}, the pxp SSCM is computed, and then from the SSCM an estimator of the correlation matrix, which is done by the function \code{\link{SSCM2Shape}}, see there for details.
       |               ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sscor.Rd: Qn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.Rd: levelplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_moran.Rd: nb2listw
  ssfa.Rd: nb2listw, maxNR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  LinearTSVMSSLR.Rd: SVM
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) new.distance.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) new.distance.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:30-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sensitivity.plot.Rd:38-40: Lost braces in \itemize; meant \describe ?
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_ssp.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) SRanalysis.Rd:100: Lost braces
   100 |   P. B{\"u}hlmann (2019). Stabilizing Variable Selection and
       |       ^
checkRd: (-1) StabilizedRegression.Rd:109: Lost braces
   109 |   P. B{\"u}hlmann (2019). Stabilizing Variable Selection and
       |       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  LearnerList.Rd: ctree
  accuracy.Rd: classAgreement
  stabletree-coercion.Rd: randomForest, RandomForest-class, cforest,
    ranger
  stabletree.Rd: as.party
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) stabsel_parameters.Rd:42: Lost braces
    42 |     always use code{"none"}.}
       |                    ^
checkRd: (-1) stabsel_stabsel.Rd:25: Lost braces
    25 |     always use code{"none"}.}
       |                    ^
checkRd: (-1) stackExample.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stackExample.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stamppFst.Rd:20: Lost braces
    20 | \code{Fsts}{a matrix of pairwise Fst values between populations}
       |            ^
checkRd: (-1) stamppFst.Rd:21: Lost braces
    21 | \code{Pvalues}{a matrix of p-values for each of the pairwise Fst values containined in the 'Fsts' matrix}
       |               ^
checkRd: (-1) stamppFst.Rd:22: Lost braces
    22 | \code{Bootstraps}{a dataframe of each Fst value generated during Bootstrapping and the associated confidence intervals}
       |                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘stamp.direction.r’
checkRd: (-1) standardize.Rd:94: Lost braces; missing escapes or markup?
    94 | take on values {-0.5, 0, 0.5} rather than {-1, 0, 1}, the standard deviation
       |                ^
checkRd: (-1) standardize.Rd:94: Lost braces; missing escapes or markup?
    94 | take on values {-0.5, 0, 0.5} rather than {-1, 0, 1}, the standard deviation
       |                                           ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
checkRd: (-1) get_fields.Rd:27: Lost braces
    27 | codes, the function will return a warning by default, suggesting setting \code{convert_field_names} to code{TRUE}.
       |                                                                                                            ^
checkRd: (-1) identify_form_fields.Rd:34: Lost braces
    34 | codes, the function will return a warning by default, suggesting setting \code{convert_field_names} to code{TRUE}.
       |                                                                                                            ^
checkRd: (-1) abs_parms.Rd:67: Lost braces; missing escapes or markup?
    67 |    \item $S_{275-295}$ slope between 275 and 295 nm calculated with nonlinear regression
       |             ^
checkRd: (-1) abs_parms.Rd:68: Lost braces; missing escapes or markup?
    68 |    \item $S_{350-400}$ slope between 350 and 400 nm calculated with nonlinear regression
       |             ^
checkRd: (-1) abs_parms.Rd:69: Lost braces; missing escapes or markup?
    69 |    \item $S_{300-700}$ slope between 275 and 295 nm calculated with nonlinear regression
       |             ^
checkRd: (-1) abs_parms.Rd:70: Lost braces; missing escapes or markup?
    70 |    \item SR slope ratio, calculated by $S_{275-295}$/$S_{350-400}$
       |                                           ^
checkRd: (-1) abs_parms.Rd:70: Lost braces; missing escapes or markup?
    70 |    \item SR slope ratio, calculated by $S_{275-295}$/$S_{350-400}$
       |                                                         ^
checkRd: (-1) abs_parms.Rd:71: Lost braces; missing escapes or markup?
    71 |    \item E2:E3 ratio $a_{250}$/$a_{365}$
       |                         ^
checkRd: (-1) abs_parms.Rd:71: Lost braces; missing escapes or markup?
    71 |    \item E2:E3 ratio $a_{250}$/$a_{365}$
       |                                   ^
checkRd: (-1) abs_parms.Rd:72: Lost braces; missing escapes or markup?
    72 |    \item E4:E6 ratio $a_{465}$/$a_{665}$
       |                         ^
checkRd: (-1) abs_parms.Rd:72: Lost braces; missing escapes or markup?
    72 |    \item E4:E6 ratio $a_{465}$/$a_{665}$
       |                                   ^
checkRd: (-1) abs_parms.Rd:73: Lost braces; missing escapes or markup?
    73 |    \item $a_{254}$ absorbance at 254 nm
       |             ^
checkRd: (-1) abs_parms.Rd:74: Lost braces; missing escapes or markup?
    74 |    \item $a_{300}$ absorbance at 300 nm
       |             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ggeem.Rd: eem_extract
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) stargazer.Rd:229: Lost braces
   229 |   \item{report}{a character string containing only elements of {\code{"v"}, \code{"c"}, \code{"s"},\code{"t"}, \code{"p"}, \code{"*"}} that determines whether, and in which order, variable names (\code{"v"}), coefficients (\code{"c"}), standard errors/confidence intervals (\code{"s"}), test statistics (\code{"t"}) and p-values (\code{"p"}) should be reported in regression tables. If one of the aforementioned letters is followed by an asterisk (\code{"*"}), significance stars will be reported next to the corresponding statistic.}
       |                                                                ^
checkRd: (-1) stargazer.Rd:246: Lost braces
   246 |   \item{table.placement}{a character string containing only elements of {\code{"h"}, \code{"t"},\code{"b"}, \code{"p"}, \code{"!"}, \code{"H"}} that determines the table placement in its LaTeX floating environment.}
       |                                                                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘stat_frequency.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘character_dimensions.Rd’ ‘constellation_as_multistar.Rd’
    ‘constellation_as_tibble_list.Rd’ ‘define_dimension.Rd’
    ‘define_fact.Rd’ ‘dm_mrs_age.Rd’ ‘dm_mrs_cause.Rd’
    ‘filter_dimension.Rd’ ‘filter_fact_rows.Rd’
    ‘get_conformed_dimension.Rd’ ‘get_conformed_dimension_names.Rd’
    ‘get_dimension.Rd’ ‘get_dimension_attribute_names.Rd’
    ‘get_dimension_names.Rd’ ‘get_measure_names.Rd’ ‘get_star_schema.Rd’
    ‘get_star_schema_names.Rd’ ‘incremental_refresh_constellation.Rd’
    ‘incremental_refresh_star_schema.Rd’ ‘match_records.Rd’
    ‘modify_conformed_dimension_records.Rd’ ‘modify_dimension_records.Rd’
    ‘ms_mrs.Rd’ ‘ms_mrs_test.Rd’ ‘multistar_as_flat_table.Rd’
    ‘purge_dimensions_constellation.Rd’ ‘purge_dimensions_star_schema.Rd’
    ‘rename_dimension.Rd’ ‘rename_dimension_attributes.Rd’
    ‘rename_fact.Rd’ ‘rename_measures.Rd’ ‘role_playing_dimension.Rd’
    ‘run_query.Rd’ ‘select_dimension.Rd’ ‘select_fact.Rd’ ‘snake_case.Rd’
    ‘st_mrs_age.Rd’ ‘st_mrs_age_test.Rd’ ‘st_mrs_age_w10.Rd’
    ‘st_mrs_age_w11.Rd’ ‘st_mrs_age_w_test.Rd’ ‘st_mrs_cause.Rd’
    ‘st_mrs_cause_test.Rd’ ‘st_mrs_cause_w10.Rd’ ‘st_mrs_cause_w11.Rd’
    ‘st_mrs_cause_w_test.Rd’ ‘star_schema_as_flat_table.Rd’
    ‘star_schema_as_multistar.Rd’ ‘star_schema_as_tibble_list.Rd’
    ‘update_record.Rd’ ‘update_selection.Rd’
    ‘update_selection_general.Rd’ ‘updates_st_mrs_age.Rd’
    ‘updates_st_mrs_age_test.Rd’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘prcomp.Rd’
checkRd: (-1) multiCUMSUM.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) AutoPollution.Rd:16: Lost braces
    16 |     \code{Side} \tab {Side of vehicle: code{1}=right or \code{2}=left}\cr
       |                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Statamarkdown-package.rd: knitr-package
  stata_engine.rd: knit_engines
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  elapsed.Rd: week, month, year
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) statcan_data.Rd:22: Lost braces; missing escapes or markup?
    22 | \code{statcan_data()} function has 2 arguments to fulfill to get data: {tableNumber} & {lang}.
       |                                                                        ^
checkRd: (-1) statcan_data.Rd:22: Lost braces; missing escapes or markup?
    22 | \code{statcan_data()} function has 2 arguments to fulfill to get data: {tableNumber} & {lang}.
       |                                                                                        ^
checkRd: (-1) statcan_search.Rd:18: Lost braces; missing escapes or markup?
    18 | The \code{statcan_search()} function has 2 arguments to fulfill to find a database: {keywords} and {lang}.
       |                                                                                     ^
checkRd: (-1) statcan_search.Rd:18: Lost braces; missing escapes or markup?
    18 | The \code{statcan_search()} function has 2 arguments to fulfill to find a database: {keywords} and {lang}.
       |                                                                                                    ^
Running examples in ‘statcanR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: statcan_download_data
> ### Title: statcanR download data function
> ### Aliases: statcan_download_data
> 
> ### ** Examples
> 
> mydata <- statcan_data('27-10-0014-01', 'eng')
Error in curl::curl_fetch_memory(url, handle = handle) : 
  SSL peer certificate or SSH remote key was not OK [www150.statcan.gc.ca]: server verification failed: certificate signer not trusted. (CAfile: /etc/ssl/certs/ca-certificates.crt CRLfile: none)
Calls: statcan_data ... request_fetch.write_memory -> <Anonymous> -> raise_libcurl_error
Execution halted
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘od_list.R’ ‘od_resource.R’ ‘od_utils.R’ ‘other_endpoints.R’
    ‘sc_data.R’ ‘schema.R’ ‘schema_uri.R’ ‘sdmx_table.R’ ‘table.R’
    ‘table_as_data_frame.R’ ‘table_json.R’ ‘table_meta.R’ ‘table_saved.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  runMultiTraitGwas.Rd: GWAS
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following possibly unsafe calls:
File ‘statnet.common/R/control.utilities.R’:
  unlockBinding("snctrl", environment(snctrl))
  unlockBinding("snctrl", environment(update_my_snctrl))
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tables.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘quote_tags.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  quote_cloud.Rd: wordcloud
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) sample2indp.pow.Rd:48: Lost braces
    48 | Pooled standard deviation= \code{sp} = sqrt{((n1 - 1) sigma1^2 +(n2 - 1) sigma2^2) / (n1 + n2 - 2)}
       |                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Heat.Rd: pheatmap
  ImpPlot.Rd: randomForest, gbm
  cv_glmnet_plot.Rd: glmnet
  esSim.Rd: lmFit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) rankSTB.Rd:31: Lost braces; missing escapes or markup?
    31 | are transformed to min. rank-values. In step 6) the "N_{k-1}-(1-alpha)*N largest" elements of "d_{l}^{theta}" have to
       |                                                        ^
checkRd: (-1) rankSTB.Rd:31: Lost braces; missing escapes or markup?
    31 | are transformed to min. rank-values. In step 6) the "N_{k-1}-(1-alpha)*N largest" elements of "d_{l}^{theta}" have to
       |                                                                                                  ^
checkRd: (-1) rankSTB.Rd:31: Lost braces; missing escapes or markup?
    31 | are transformed to min. rank-values. In step 6) the "N_{k-1}-(1-alpha)*N largest" elements of "d_{l}^{theta}" have to
       |                                                                                                      ^
checkRd: (-1) stb.default.Rd:43: Lost braces
    43 | sampling from the standard normal distribution. Another example is defining func=function(n){rchisq(n=n, df=3, ncp=2)}
       |                                                                                             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  STB-Package.Rd: VCA
  stb.VCA.Rd: residuals.VCA, ranef.VCA
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) stdGlm.Rd:93: Escaped LaTeX specials: \&
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) STEPCAM_ABC.Rd:19: Lost braces
    19 |   \code{rows}{ every row corresponds to a different plot or community} \cr
       |              ^
checkRd: (-1) STEPCAM_ABC.Rd:20: Lost braces
    20 |   \code{columns}{ every column corresponds to a different species.} \cr
       |                 ^
checkRd: (-1) STEPCAM_ABC.Rd:25: Lost braces
    25 |   \code{rows}{ every row corresponds to a different species} \cr
       |              ^
checkRd: (-1) STEPCAM_ABC.Rd:26: Lost braces
    26 |   \code{columns}{ the first column contains the name of the species, every consecutive column corresponds to a different trait} \cr
       |                 ^
checkRd: (-1) plotSTEPCAM.Rd:16: Lost braces
    16 |             - \code{DA}{ a vector containing the posterior distribution for the parameter dispersal assembly} \cr
       |                        ^
checkRd: (-1) plotSTEPCAM.Rd:17: Lost braces
    17 |             - \code{HF}{ a vector containing the posterior distribution for the parameter habitat filtering} \cr
       |                        ^
checkRd: (-1) plotSTEPCAM.Rd:18: Lost braces
    18 |             - \code{LS}{ a vector containing the posterior distribution for the parameter limiting similarity} \cr
       |                        ^
checkRd: (-1) tuneParam.Rd:28: Lost braces; missing escapes or markup?
    28 | It supports the BFGS optimization method ('QN') from the optim {stats} function, the Hooke-Jeeves derivative-free
       |                                                                ^
checkRd: (-1) tuneParamCL2.Rd:28: Lost braces; missing escapes or markup?
    28 | It supports the BFGS optimization method ('QN') from the optim {stats} function, the Hooke-Jeeves derivative-free
       |                                                                ^
Specified C++11: please drop specification unless essential
checkRd: (-1) landmarkMatrixToList.Rd:10: Lost braces
    10 |   \item{semilandmark.pattern}{a regular expression pattern passed to \code{sub()} for identifying and grouping curve points. The default is landmark names ending in one or more numbers. To disable grouping, set to code{''}.}
       |                                                                                                                                                                                                                           ^
checkRd: (-1) docker_config_collection.Rd:11: Lost braces; missing escapes or markup?
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("config")}
       | ^
checkRd: (-1) docker_container.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_container")}
       | ^
checkRd: (-1) docker_image_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("image")}
       | ^
checkRd: (-1) docker_plugin_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("plugin")}
       | ^
checkRd: (-1) docker_service_collection.Rd:11: Lost braces
    11 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("service")}
       | ^
checkRd: (-1) docker_task.Rd:13: Lost braces
    13 | \Sexpr[results=rd,stage=render]{stevedore:::generate_help("docker_task")}
       | ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_vcs.Rd’ ‘do_bma.R’ ‘do_bma.Rd’ ‘evaluate_models.R’
    ‘evaluate_models.Rd’ ‘gam_model_probs.R’ ‘gam_model_probs.Rd’
    ‘plot_1d_smooth.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  STLK.Rd: Kest
  STLg.Rd: pcf
  as.lpp.stlpp.Rd: as.lpp, lpp
  as.stlpp.Rd: ppp, lpp, linnet
  as.tpp.stlpp.Rd: lpp, as.lpp
  density.stlpp.Rd: density.lpp, densityQuick.lpp, bw.scott.iso
  densityVoronoi.stlpp.Rd: densityVoronoi.lpp
  densityVoronoi.tpp.Rd: densityVoronoi.lpp
  methods.stlpp.Rd: as.linim
  rpoistlpp.Rd: ppp
  rthin.stlpp.Rd: rthin
  stlpp.Rd: as.ppp, lpp, linnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following files/directories:
  ‘corrviz.html’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_diag.Rd’ ‘get_effects.Rd’ ‘get_network.Rd’ ‘stm_diag.R’
    ‘stm_effects.R’ ‘stm_network.R’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  labelTopics.Rd: lda
  topicLasso.Rd: glmnet, cv.glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stochBlockORP.Rd: genRandomPar
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Functions.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sepstlppm.R’ ‘sepstppm.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  globaldiag.Rd: STIKhat, STLKinhom
  localSTLKinhom.Rd: STLKinhom, STLginhom
  localdiag.Rd: KLISTAhat
  localtest.Rd: KLISTAhat, LISTAhat
  plot.globaldiag.Rd: STLKinhom
  plot.locstppm.Rd: OS
  plot.sepstppm.Rd: OS
  plot.stlgcppm.Rd: OS
  plot.stlp.Rd: plot3D
  plot.stppm.Rd: OS
  sepstlppm.Rd: lppm
  sepstppm.Rd: ppm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Malformed Title field: should not end in a period.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘defStormsList.R’
checkRd: (-1) powderymildew.Rd:14-16: Lost braces
    14 | \code{$demographic.coord}{
       |                          ^
checkRd: (-1) powderymildew.Rd:18-20: Lost braces
    18 | \code{$genetic.coord}{
       |                      ^
checkRd: (-1) powderymildew.Rd:22-24: Lost braces
    22 | \code{$demographic.measures}{
       |                             ^
checkRd: (-1) powderymildew.Rd:26-28: Lost braces
    26 | \code{$genetic.frequencies}{
       |                            ^
Found the following files/directories:
  ‘myNewStrat.R’
checkRd: (-1) StrathE2E2-package.Rd:70: Lost braces; missing escapes or markup?
    70 | {Basic model operations:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:79: Lost braces; missing escapes or markup?
    79 | {Parameter estimation:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:88: Lost braces; missing escapes or markup?
    88 | {Sensitivity and Monte Carlo analyses:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:98: Lost braces; missing escapes or markup?
    98 | {Compare model runs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:105: Lost braces; missing escapes or markup?
   105 | {Fishery yield analysis:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:111: Lost braces; missing escapes or markup?
   111 | {Visualize model inputs:} \cr
       | ^
checkRd: (-1) StrathE2E2-package.Rd:117: Lost braces; missing escapes or markup?
   117 | {Visualize model outputs:} \cr
       | ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apportion_inverse.R’ ‘apportion_polygon.R’ ‘apportion_web.R’
    ‘prep_reach_dist.R’
Malformed Title field: should not end in a period.
Specified C++11: please drop specification unless essential
File ‘stringfish/libs/stringfish.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘LEVELS’, ‘STDVEC_DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  str_replace.Rd: stri_replace
  str_split.Rd: stri_split
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘chunks_of_n.Rd’ ‘generic_stroke.R’ ‘index_plot.R’ ‘mfi_calc.R’
    ‘mfi_domains.Rd’ ‘pase_calc.R’
efpFunctional: multiple local function definitions for ‘plotProcess’
  with different formal arguments
mefp.efp: multiple local function definitions for ‘computeEmpProc’ with
  different formal arguments
checkRd: (-1) calculateStatistics.Rd:22: Lost braces; missing escapes or markup?
    22 | \item{quant}{numeric quantile to calculate {0,1}, default 0.95.}
       |                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  calculateAllele.Rd: data.table
  calculateSpike.Rd: data.table
  combine_gui.Rd: rbind.fill
  editData_gui.Rd: gdf, gtable
  ggsave_gui.Rd: ggsave
  plotDistribution_gui.Rd: geom_density
  plotGroups_gui.Rd: stat_ecdf
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) cmss.Rd:21: Lost braces
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                        ^
checkRd: (-1) cmss.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                            ^
checkRd: (-1) cmss.Rd:21: Lost braces
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                                        ^
checkRd: (-1) cmss.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{sim.fn}{Optional function to be used as similarity measure for accept/reject step. Default function is: |cor( bar{x}^{(r)}|,~ bar{x}_{target} ) |}
       |                                                                                                                                            ^
checkRd: (-1) subdetect-package.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) subdetect-package.Rd:12: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotAnnGraph.Rd: plot.igraph
  plotGraphL.Rd: plot.igraph, layout.random
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) P3C.Rd:18: Lost braces; missing escapes or markup?
    18 |  used for this will be 1.00*10^{-PoissonThreshold}.}
       |                                ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  subspace.Rd: ggvis
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) fp19.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:12-13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fp19.Rd:25: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_glyph_ribbon.R’ ‘geom_glyph_ribbon.Rd’ ‘geom_glyph_segment.Rd’
    ‘theme_glyph.Rd’
checkRd: (-1) suggests.Rd:14: Lost braces; missing escapes or markup?
    14 | {suggests} aims to make that workflow as minimal and painless as possible,
       | ^
File ‘sumR/libs/sumR.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) sunburst.Rd:30: Lost braces; missing escapes or markup?
    30 | nested d3 JSON hierarchy with `{name:...,  children:[];}`.  \code{csvdata}
       |                                ^
checkRd: (-1) sunburst.Rd:88: Lost braces; missing escapes or markup?
    88 | \item{jsondata}{\code{deprecated} use data argument instead; data in nested d3 JSON hierarchy with `{name:...,  children:[];}`}
       |                                                                                                     ^
checkRd: (-1) sund2b.Rd:22: Lost braces; missing escapes or markup?
    22 | nested d3 JSON hierarchy with `{name:...,  children:[];}`.  \code{list}, \code{character},
       |                                ^
File ‘sundialr/libs/sundialr.so’:
  Found ‘abort’, possibly from ‘abort’ (C)
    Object: ‘../inst/lib/libsundials_core.a’
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
    Object: ‘../inst/lib/libsundials_core.a’
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘../inst/lib/libsundials_core.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Objects: ‘../inst/lib/libsundials_core.a’,
      ‘../inst/lib/libsundials_cvodes.a’,
      ‘../inst/lib/libsundials_idas.a’,
      ‘../inst/lib/libsundials_nvecserial.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checkRd: (-1) BiclustSet-class.Rd:19: Lost braces
    19 |     \item{\code{Number}:}{code{"numeric"}, number of biclusters in the set}
       |                               ^
checkRd: (-1) plot.Rd:42: Lost braces; missing escapes or markup?
    42 |  \item{color.off}{color code; specifying the color for set(s) which are "{absent}" for an intersection.}
       |                                                                          ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mice.impute.SuperLearner.Rd: SuperLearner
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  KNNTrainer.Rd: R6Class
  LabelEncoder.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  level_pairs.Rd: tibble
  new_pairwise_tbl.Rd: tibble
  row_blank.Rd: tibble_row
  row_error.Rd: tibble_row
  row_term.Rd: tibble_row
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ANOVA_exact.Rd: aov_car, emmeans
  emmeans_power.Rd: aov_car, emmeans
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
checkRd: (-1) getFittedProbs.Rd:6-8: Lost braces
     6 | getFittedValues <- function(object) {
       |                                     ^
checkRd: (-1) getFittedProbs.Rd:14-16: Lost braces
    14 | getFittedValues <- function(object) {
       |                                     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  surrosurv.Rd: optimx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svycoplot.Rd: xyplot
  svycoxph.Rd: coxph, predict.coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) tprob.Rd:138: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:139: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:140: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:141: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:142: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:143: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:145: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tprob.Rd:146: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forest_plot.Rd: draw_label
  forest_plot_grid.Rd: plot_grid
  kaplan_meier_grid.Rd: ggsurvplot, save_pdf, marrangeGrob
  kaplan_meier_plot.Rd: ggsurvplot, save_pdf
  pluck_multivariate_analysis.Rd: coxph
  pluck_survival_analysis.Rd: survfit, survdiff, coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) coxph_mpl_dc.Rd:24: Lost braces; missing escapes or markup?
    24 | \item{mpl_h0t}{MPL estimates of the baseline hazard for T, i.e. h_{0T}(x_i)}
       |                                                                   ^
checkRd: (-1) coxph_mpl_dc.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{mpl_h0c}{MPL estimates of the baseline hazard for C, i.e. h_{0C}(x_i)}
       |                                                                   ^
checkRd: (-1) coxph_mpl_dc.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{mpl_H0t}{MPL estimates of the baseline cumulative hazard for T, i.e. H_{0T}(x_i)}
       |                                                                              ^
checkRd: (-1) coxph_mpl_dc.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{mpl_H0c}{MPL estimates of the baseline cumulative hazard for C, i.e. H_{0c}(x_i)}
       |                                                                              ^
checkRd: (-1) coxph_mpl_dc.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{mpl_S0t}{MPL estimates of the baseline survival for T, i.e. S_{0T}(x_i)}
       |                                                                     ^
checkRd: (-1) coxph_mpl_dc.Rd:29: Lost braces; missing escapes or markup?
    29 | \item{mpl_S0c}{MPL estimates of the baseline survival for C, i.e. S_{0C}(x_i)}
       |                                                                     ^
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add.R’ ‘add_alive.Rd’ ‘add_bipoc.Rd’ ‘add_castaway.Rd’
    ‘add_demogs.Rd’ ‘add_finalist.Rd’ ‘add_full_name.Rd’ ‘add_gender.Rd’
    ‘add_jury.Rd’ ‘add_lgbt.Rd’ ‘add_result.Rd’ ‘add_tribe.Rd’
    ‘add_tribe_colour.Rd’ ‘add_winner.Rd’ ‘castaway_details.Rd’
    ‘filter_alive.Rd’ ‘filter_final_n.Rd’ ‘filter_finalist.Rd’
    ‘filter_jury.Rd’ ‘filter_new_era.Rd’ ‘filter_us.Rd’ ‘filter_vs.Rd’
    ‘filter_winner.Rd’ ‘filters.R’ ‘get.R’ ‘helpers.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘scoreFull.R’ ‘scoreHalf.R’ ‘scoreLVCF.R’ ‘scoreNVCF.R’
checkRd: (-1) sf.Rd:66: Lost braces; missing escapes or markup?
    66 | A {data.table} which is stored as an attribute of
       |   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘censor_event.Rd’ ‘survival_class.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ConvertWeibull.Rd: survreg
  NormalMeanDiffCens.Rd: Surv
  ParamSampleCens.Rd: Surv
  SurvRegCens.Rd: Surv, survreg
  WeibullDiag.Rd: Surv, plot.survfit
  WeibullReg.Rd: survreg, Surv
  censorContVar.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) coxDT.Rd:76: Lost braces; missing escapes or markup?
    76 | The estimation procedure here is performed using coxph {survival} and inserting these estimated
       |                                                        ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘suso_gql_helpers.R’ ‘suso_gql_uploadMap.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.sValues.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stability.Rd: VAR
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svDialogstcltk-package.Rd: dlg_message, dlg_input, dlg_list,
    dlg_open, dlg_save, dlg_dir
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
checkRd: (-1) koInstall.Rd:24: Lost braces; missing escapes or markup?
    24 | set, svKomodo loads {svSocket}, starts the socket server listening to the
       |                     ^
checkRd: (-1) svKomodo-package.Rd:18: Lost braces; missing escapes or markup?
    18 | Komodo and (2) the present {svKomodo} R package that work hand in hand to
       |                            ^
checkRd: (-1) svKomodo-package.Rd:28: Lost braces; missing escapes or markup?
    28 | Nevertheless, the SciViews-K Komodo addin and the {svKomodo} R package
       |                                                   ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                          ^
checkRd: (-1) svKomodo-package.Rd:31: Lost braces; missing escapes or markup?
    31 | communication protocols developed in the {svSocket} and {svHttp} R packages.
       |                                                         ^
checkRd: (-1) svKomodo-package.Rd:37: Lost braces; missing escapes or markup?
    37 | Both SciViews-K and {svKomodo} should be considered archived items. I keep
       |                     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  svy_vglm.Rd: vglm, svydesign, svrepdesign
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) eff_n.Rd:32: Lost braces; missing escapes or markup?
    32 | \code{\link[survey:surveysummary]{survey::svymean()}} and related functions from the {survey}
       |                                                                                      ^
checkRd: (-1) swDsn.Rd:28: Lost braces
    28 | numeric (scalar or vector): Relative treatment effect upon crossing over from control. Note that this is not the treatment effect (the treatment effect is specified in the call to other functions such as \code{swPwr} or \code{swSim})!  If \code{tx.effect.frac} is set to a scalar with value of 1, the standard SW CRT treatment effect will be presumed. If code{tx.effect.frac} is set to a scalar with a fractional value between 0 and 1, then only the first time point upon crossing over from control will have fractional relative treatment effect; the remaining exposure times will have a relative treatment effect of 1. If a vector of fractional treatment effect is specified, each element of the vector corresponds to the (fractional) treatment effect upon crossing over from control; if the length of the vector is less than total number of exposure times, the remaining time points will have a relative treatment effect value of 1; if the length of the vector is greater than total number of time points after crossing over, not all elements of \code{tx.effect.frac} will be used. The default value is (scalar) 1.
       |                                                                                                                                                                                                                                                                                                                                                                        ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  sw_sweep.Rd: tk_make_future_timeseries
  tidiers_bats.Rd: bats, tbats
  tidiers_ets.Rd: ets
  tidiers_nnetar.Rd: nnetar
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Additional functions and data sets
    Amendments to functions
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    pre-release switchboard (2020 - 2021)
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  import_local_nut.Rd: rem_reps, all_params, all_params_dtrng,
    single_param
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) hyph.support.en.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hyph.support.en.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kRp.hyphen-methods.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) manage.hyph.pat.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elliptical.ts.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{epsilon}{positive convergence tolerance \emph{e}; the iterations converge when |fit - fit_{old}|/|fit| < \emph{e}. Default is \emph{e=1e-04}.}
       |                                                                                                   ^
Specified C++11: please drop specification unless essential
checkRd: (-1) coord2dist.Rd:14: Lost braces; missing escapes or markup?
    14 | \code{n} x 4 matrix of coordinates consisting of {lat or y, lon or x} pairs for each each site
       |                                                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cor.matrix.Rd: mantel, mantel.partial, procrustes
  matrix.x.Rd: gowdis
  optimal.Rd: gowdis
  permut.vector.Rd: shuffleSet
  procrustes.syncsa.Rd: procrustes
  rao.diversity.Rd: gowdis
  syncsa.Rd: gowdis, mantel, procrustes, vegdist
  var.type.Rd: gowdis
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) create_synthetic_example.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) create_synthetic_example.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) create_synthetic_example.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) initial_estimates_example.Rd:12: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fn.V.Rd: ipop
  synth.Rd: ipop, optimx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following files/directories:
  ‘test.csv’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bordear.Rd: createStyle
  escribirTabla.Rd: createStyle
  tablaxlsx.estilos.set.Rd: createStyle
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tableHTML_output.Rd: uiOutput
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) tabmulti.Rd:68: Lost braces
    68 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
checkRd: (-1) tabmulti.svy.Rd:67: Lost braces
    67 | \\code{yvarlabels = list(race = "Race/ethnicity", age_yrs = "Age (years)")}.}
       |       ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘class_methods.R’ ‘convert.R’ ‘freq.R’ ‘lilypond.R’ ‘lp_render.R’
    ‘midi.R’ ‘modes.R’ ‘notes.R’ ‘plot.R’ ‘read_midi.Rd’
    ‘render_chordchart.Rd’ ‘scales.R’ ‘sf.R’ ‘snippet.R’ ‘strings.R’
    ‘transpose.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |   ^
checkRd: (-1) parse_logs.Rd:38: Lost braces
    38 |  '{{ip ip_address}} [{{date access_date}}]...'.
       |                      ^
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xyplot.Arima.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  zoom.Rd: print.trellis, Lattice, xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  smoothPalette.Rd: brewer.pal
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plott.R’ ‘read_cats_csv.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_lines.R’ ‘init.R’ ‘plots.R’ ‘report.R’ ‘tokenize.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  IRT.threshold.Rd: IRT.irfprob
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ASTBranch.Rd: R6Class
  ASTFunction.Rd: R6Class
  ASTMultiply.Rd: R6Class
  ASTPlus.Rd: R6Class
  ASTTableFormula.Rd: R6Class
  ASTVariable.Rd: R6Class
  Parser.Rd: R6Class
  Token.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘auth0.R’ ‘config.R’ ‘entra_id.R’ ‘google.R’ ‘utils.R’
checkRd: (-1) tapnet-package.Rd:40: Escaped LaTeX specials: \&
checkRd: (-1) TAQ-functions.Rd:119: Lost braces
   119 | Brownlees, C. T., and Gallo, G. M. (2006). Financial Econometric Analysis at Ultra{--}High Frequency: Data Handling Concerns, \emph{Computational Statistics and Data Analysis} \bold{51}, 2232--2245.
       |                                                                                   ^
checkRd: (-1) TAQ-package.Rd:59: Lost braces
    59 | Brownlees, C. T., and Gallo, G. M. (2006). Financial Econometric Analysis at Ultra{--}High Frequency: Data Handling Concerns, \emph{Computational Statistics and Data Analysis} \bold{51}, 2232--2245.
       |                                                                                   ^
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘alean.Rd’ ‘nondom.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘depreciation_interest.R’ ‘friction_period.R’ ‘nl_med_prices.R’
    ‘nl_pat_fam_prices.R’ ‘nl_ppp.R’ ‘nl_price_index.R’
    ‘nl_prod_oth_prices.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Tagged_table.Rd: data.table
  as.data.table.Mashed_table.Rd: as.data.table, data.table
  as_workbook.Rd: openxlsx
  cmash.Rd: data.table
  write_worksheet.Rd: openxlsx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘parse_schema.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as_data_frame.Rd: as_tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘TaylorRussell.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘format_code.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) tca.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{C1.map}{An \code{p1} by \code{k} matrix of 0/1 values, indicating for each of the \code{p1} covariates in \code{C1} whether to consider its potential effects on the values of each of the \code{k} sources (e.g., if position \code{i,j} in \code{C1.map} is 1 then the potential effect of the \code{i}-th covariate in \code{C1} on the {j}-th source will be considered). If \code{C1.map == NULL} then effects for all covariates in \code{C1} will be considered in each of the sources. Note that \code{C1.map} is available only if \code{constrain_mu == TRUE}.}
       |                                                                                                                                                                                                                                                                                                                                                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot1GS.Rd: element_text, +.gg
  plotFit.GS.Rd: +.gg
  plotMultipleGS.Rd: element_text, +.gg
  plotPat.1GS.Rd: element_text, +.gg
  plotSelect.GS.Rd: element_text, +.gg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) windows/tk2reg.Rd:17: Escaped LaTeX specials: \_
checkRd: (-1) windows/tk2reg.Rd:18: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) windows/tk2reg.Rd:51: Escaped LaTeX specials: \_
checkRd: (-1) windows/tk2reg.Rd:52: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:53: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:57: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:58: Escaped LaTeX specials: \_ \_
checkRd: (-1) windows/tk2reg.Rd:60: Escaped LaTeX specials: \_
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mobius-strips.Rd’
File ‘tdigest/libs/tdigest.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  action_card.Rd: R6Class
  card_section.Rd: R6Class
  connector_card.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
checkRd: (-1) sendChatAction.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sendChatAction.Rd:25: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Bot.Rd: R6Class
  CallbackQueryHandler.Rd: R6Class
  CommandHandler.Rd: R6Class
  Dispatcher.Rd: R6Class
  ErrorHandler.Rd: R6Class
  Handler.Rd: R6Class
  MessageHandler.Rd: R6Class
  TelegramObject.Rd: R6Class
  Update.Rd: R6Class
  Updater.Rd: R6Class
  Webhook.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) Tendril.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Tendril.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  parse_arguments.Rd: yaml.load
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘georeference_overlay.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_spatial_rgb.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) MC_CRUDE.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{lsf}{objective function with limit state function in form of function(x) {x[1]+x[2]...}}
       |                                                                                ^
checkRd: (-1) MC_IS.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{lsf}{objective function with limit state function in form of function(x) {x[1]+x[2]...}}
       |                                                                                ^
checkRd: (-1) PROB_BASEVAR-class.Rd:14: Lost braces
    14 | \item{\code{Id}}{Place in vector of objective functional expression function(x){x[id]}}
       |                                                                                ^
checkRd: (-1) PROB_DETVAR-class.Rd:14: Lost braces
    14 | \item{\code{Id}}{Place in vector of objective functional expression function(x){x[id]}}
       |                                                                                ^
checkRd: (-1) SORM.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{lsf}{objective function with limit state function in form of function(x) {x[1]+x[2]...}}
       |                                                                                ^
checkRd: (-1) SYS_LSF-class.Rd:16: Lost braces
    16 | \item{\code{func}}{prepared for objective functions like SYS_LSF$func <- function(x){return(x[1] + x[2])}}
       |                                                                                     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cettiidae.Rd: read.tree, ape
  conifers.Rd: read.tree, ape
  mammalia.Rd: read.tree, ape
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) lognormConstCVCI.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lognormConstCVCI.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lognormConstCVCI.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normConstCVCI.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) testassay.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  chk-defunct.Rd: dplyr_tidy_select
  expect-defunct.Rd: dplyr_tidy_select
  output_results_excel.Rd: test_dir, test_file
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘testthat/libs/testthat.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘FORMALS’, ‘SET_BODY’,
    ‘SET_CLOENV’, ‘SET_FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) permucycle.Rd:37: Lost braces; missing escapes or markup?
    37 |  {The 2 in the first row means there are two cycles;}
       |  ^
checkRd: (-1) permucycle.Rd:38: Lost braces; missing escapes or markup?
    38 |   {The second row means there is a cycle of length 2, with members  (1,3);}
       |   ^
checkRd: (-1) permucycle.Rd:39: Lost braces; missing escapes or markup?
    39 |  {The third row means  there is a cycle of length 1, with member  (2);}
       |  ^
checkRd: (-1) permucycle.Rd:40: Lost braces; missing escapes or markup?
    40 |  {The fourth row is redundant for this specific case.}
       |  ^
checkRd: (-1) permucycle.Rd:41: Lost braces; missing escapes or markup?
    41 |  {One can read from the output of permucycle() to obtain cycle notation (13)(2) of the permutation, and other information.}
       |  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tex_preview.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dtm_builder.Rd’ ‘dtm_stopper.Rd’ ‘rancor_builder.Rd’
    ‘rancors_builder.Rd’ ‘utils-perm.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_sdg.Rd: color
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tts_speak_engine.Rd: knit_engines
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BNS.Rd: R6Class
  Collocations.Rd: R6Class
  LatentDirichletAllocation.Rd: R6Class
  LatentSemanticAnalysis.Rd: R6Class
  RelaxedWordMoversDistance.Rd: R6Class
  TfIdf.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) infer_Z.Rd:16: Lost braces; missing escapes or markup?
    16 |   \item{nu}{Informally, the probability that the row document has the column treatment.  Formally, the parameter for the variatioanl approximation of z_{i,k}, which is a Bernoulli distribution.}
       |                                                                                                                                                         ^
checkRd: (-1) sibp.Rd:26: Lost braces
    26 | It is recommended to use link{sibp_param_search} instead of this function to search over multiple configurations of the most important parameters.  So long as only the training data is used, the analyst can freely experimient with as many parameter configurations as he likes without corrupting his causal inferences.  Once a parameter configuration is chosen, the user can then use \link{sibp_amce} on the test set to estimate the average marginal component effect (AMCE) for each treatment.}
       |                              ^
checkRd: (-1) sibp.Rd:28: Lost braces; missing escapes or markup?
    28 |   \item{nu}{Informally, the probability that the row document has the column treatment.  Formally, the parameter for the variational approximation of z_{i,k}, which is a Bernoulli distribution.}
       |                                                                                                                                                         ^
checkRd: (-1) sibp_amce.Rd:19: Lost braces
    19 |   \item{sibp.amce}{The table returned by code{sibp_amce}.}
       |                                              ^
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘nlp_build_chunks.R’ ‘sem_search_corpus.R’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘textra.R’
checkRd: (-1) make.phrase.matrix.Rd:20: Lost braces
    20 |  \\tabular{rrrrr}{
       |           ^
checkRd: (-1) make.phrase.matrix.Rd:20-23: Lost braces
    20 |  \\tabular{rrrrr}{
       |                  ^
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  feature_columns.Rd: tidyselect
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  addDate.Rd: tfExpand
  tfplot.Rd: tfprint, tframe, tframed
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) tfd_von_mises_fisher.Rd:63: Lost braces; missing escapes or markup?
    63 | NOTE: Currently only n in {2, 3, 4, 5} are supported. For n=5 some numerical
       |                           ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  initializer_blockwise.Rd: initializer_constant
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘mock_tbl.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  flags.Rd: yaml.load
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) predict.tfunHDDC.Rd:31-39: Lost braces
    31 | The teigen family. Stat Comput 22:1021{1029. <doi.org/10.1007/
       |                                       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tfunHDDC.Rd: tkmeans
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tgstat/libs/tgstat.so’:
  Found non-API call to R: ‘Rf_GetOption’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  thaipdf_document.Rd: pdf_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) shoulders.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) shoulders.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) shoulders.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
'library' or 'require' calls not declared from:
  ‘dplyr’ ‘openxlsx’ ‘plyr’
checkRd: (-1) CPdimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) CPdimensionalityplot.Rd:19: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:15: Escaped LaTeX specials: \&
checkRd: (-1) Kinship.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) T2func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T2funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3dimensionalityplot.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3func.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:43: Escaped LaTeX specials: \&
checkRd: (-1) T3funcrep.Rd:44: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:26: Escaped LaTeX specials: \& \& \&
checkRd: (-1) TV.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:32: Escaped LaTeX specials: \&
checkRd: (-1) TV.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) pcamean.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) threewayanova.Rd:24: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TBinaryProtocol.Rd: R6Class
  TBinaryProtocolFactory.Rd: R6Class
  TBufferedTransport.Rd: R6Class
  TBufferedTransportFactory.Rd: R6Class
  TClient.Rd: R6Class
  TMemoryBuffer.Rd: R6Class
  TPayload.Rd: R6Class
  TServerSocket.Rd: R6Class
  TSocket.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  deprecated.Rd: quasiquotation
  formatting.Rd: tbl_format_setup
  frame_matrix.Rd: !!, !!!, quasiquotation
  lst.Rd: !!, !!!, .data, .env
  subsetting.Rd: vec_slice
  tibble.Rd: !!, !!!, .data, .env, quasiquotation
  tribble.Rd: !!, !!!, quasiquotation
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tibble/libs/tibble.so’:
  Found non-API calls to R: ‘IS_S4_OBJECT’, ‘OBJECT’, ‘SET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  guess_tspec.Rd: abort
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tibblify/libs/tibblify.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘OBJECT’, ‘PRENV’,
    ‘PRVALUE’, ‘R_PromiseExpr’, ‘Rf_allocSExp’, ‘Rf_findVarInFrame3’,
    ‘SETLENGTH’, ‘SET_BODY’, ‘SET_CLOENV’, ‘SET_FORMALS’,
    ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  design_gray.Rd: ggplot2
  design_grey.Rd: ggplot2
  design_lmu.Rd: ggplot2
  new_tdcmm.Rd: tibble
  visualize.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tidy_inverse_normal.Rd: rinvgauss
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘explain_methods.R’ ‘fit.gets.R’ ‘fit.group_lasso.R’ ‘m.R’
    ‘post_process.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘import_fst_chunked.R’ ‘pkg_load.R’ ‘round0.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘functions_chr_int.R’ ‘gate.Rd’ ‘gate_app.R’ ‘methods.R’
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Initial Release (v0.1.0)
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘iterate.Rd’ ‘random_walk_rank.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  predict.SL.glmnet.interaction.Rd: SL.glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_paras.Rd’ ‘checks.R’ ‘compute-idx.Rd’ ‘compute-indexes.R’
    ‘dimension-reduction.R’ ‘dimension-reduction.Rd’ ‘dist-fit.Rd’
    ‘distribution-fit.R’ ‘drought-idx.Rd’ ‘drought-indexes.R’ ‘init.R’
    ‘normalise.R’ ‘normalise.Rd’ ‘rescale.Rd’ ‘rescaling.R’
    ‘swap-values.R’ ‘swap.Rd’ ‘temporal-aggregate.Rd’
    ‘temporal-aggregation.R’ ‘theme_benchmark.Rd’
    ‘variable-transformation.R’ ‘variable-transformation.Rd’
'::' or ':::' imports not declared from:
  ‘here’ ‘janitor’ ‘ozmaps’ ‘readxl’ ‘rmapshaper’ ‘sf’ ‘tibble’
'library' or 'require' calls not declared from:
  ‘GGally’ ‘ozmaps’ ‘tidyverse’
checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
       |                    ^
checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
       |                                           ^
checkRd: (-1) json_schema.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item object  -> {"name": <type>} e.g., {"age": 32} -> {"age": "number"}
       |                                                          ^
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Minor changes:
checkRd: (-1) single_imputation.Rd:21-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) single_imputation.Rd:23-27: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.mc.Rd: ggplot2
  plot.summary.mc.Rd: ggplot2
  tidy_mc_latex.Rd: kableExtra
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tidymodl.R’ ‘tidymodl.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tidy_plate.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘summarise2.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_msg_to_chat_history.Rd’ ‘add_text.Rd’ ‘answer_as_key_value.R’
    ‘answer_as_named_list.R’ ‘answer_as_text.R’ ‘answer_using_sql.R’
    ‘answer_using_tools.R’ ‘chat_history.R’ ‘chat_history.Rd’
    ‘construct_prompt_text.Rd’ ‘df_to_string.Rd’ ‘get_chat_history.Rd’
    ‘get_prompt_wraps.Rd’ ‘internal_extraction.R’
    ‘internal_request_llm_provider.R’ ‘internal_test_helpers.R’
    ‘is_tidyprompt.Rd’ ‘llm_provider-class.Rd’ ‘llm_providers.R’
    ‘misc_llm_verify.R’ ‘persistent_chat.R’ ‘prompt_wrap.Rd’
    ‘send_prompt.R’ ‘set_chat_history.Rd’ ‘set_system_prompt.Rd’
    ‘skim_with_labels_and_levels.Rd’ ‘tidyprompt-class.Rd’ ‘tidyprompt.R’
    ‘tidyprompt.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘import_instruments.R’ ‘make_choose_all_table.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  group_by.Rd: group_by_drop_default
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘tidyr/libs/tidyr.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  formatting.Rd: tbl_format_setup
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cast_sparse.Rd: sparseMatrix
  document_term_casters.Rd: sparseMatrix
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  are_true.Rd: as_logical
  categorical_test_by.Rd: map_dfr
  count_by.Rd: count
  first_non_nas_at.Rd: select
  first_which_non_na_at.Rd: select
  format_numbers_at.Rd: mutate_at
  format_p_values_at.Rd: mutate_at
  lump_rows.Rd: summarise
  order_factor_by.Rd: fct_reorder
  pluck_vector.Rd: pluck, simplify
  rename_factor.Rd: fct_recode, fct_relevel
  rename_reorder_factor.Rd: fct_recode, fct_relevel
  with_name.Rd: pluck, str_detect
  with_value_containing.Rd: pluck, str_detect
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tw_search.R’
possible bashism in configure.ac line 138 (test -a/-o):
  if test ! -z "${with_tiledb}" -a x"${enable_building}" = x"yes"; then
  possible bashism in configure.ac line 151 (test -a/-o):
  if test ! -z "${with_tiledb}" -a x"${with_download}" = x"yes"; then
  possible bashism in configure.ac line 257 (test -a/-o):
          if test x"${machine}" = x"x86_64" && test x"${uname}" = x"Linux" -o x"${uname}" = x"Darwin"; then
checkRd: (-1) compare.Rd:46: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) setup_sql_functions.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Install {timeseriesdb} System Functions}
       |                ^
checkRd: (-1) setup_sql_functions.Rd:17: Lost braces; missing escapes or markup?
    17 | Installs functions needed to operated {timeseriesdb} in
       |                                       ^
checkRd: (-1) setup_sql_grant_rights.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Grant execute on {timeseriesdb} functions}
       |                         ^
checkRd: (-1) setup_sql_grant_rights.Rd:17: Lost braces; missing escapes or markup?
    17 | Grant execute on {timeseriesdb} functions
       |                  ^
checkRd: (-1) setup_sql_tables.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Install {timeseriesdb} System Tables}
       |                ^
checkRd: (-1) setup_sql_tables.Rd:17: Lost braces; missing escapes or markup?
    17 | Installs tables needed to operated {timeseriesdb} in
       |                                    ^
checkRd: (-1) setup_sql_triggers.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Install {timeseriesdb} Triggers}
       |                ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘geom_weekly_timeslots.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  geom_weekly_timeslots.Rd: layer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  parse_date2.Rd: anytime, anydate
  step_box_cox.Rd: selections
  step_diff.Rd: step_naomit, selections
  step_log_interval.Rd: selections
  step_ts_clean.Rd: selections
  step_ts_impute.Rd: selections
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tcor.Rd’
checkRd: (-1) alcohol.Rd:16-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) alcohol.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) alcohol.Rd:22-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) add_md.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{body}{an XML object generated via {tinkr}}
       |                                         ^
checkRd: (-1) md_ns.Rd:13: Lost braces; missing escapes or markup?
    13 | The {commonmark} package is used to translate markdown to XML, but it does
       |     ^
checkRd: (-1) md_ns.Rd:14: Lost braces; missing escapes or markup?
    14 | not assign a namespace prefix, which means that {xml2} will auto-assign a
       |                                                 ^
checkRd: (-1) stylesheet.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{The {tinkr} stylesheet}
       |            ^
checkRd: (-1) stylesheet.Rd:14: Lost braces; missing escapes or markup?
    14 | This function returns the path to the {tinkr} stylesheet
       |                                       ^
checkRd: (-1) stylesheet.Rd:11: Lost braces; missing escapes or markup?
    11 | stylesheet used by {tinkr}.
       |                    ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘base-lenses.R’ ‘where_il.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘type_function.Rd’
Specified C++14: please drop specification unless essential
checkRd: (-1) partition_undirected_graph.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{cutoff}{Numeric. The value max(0, g_{i,j} - cutoff) so that there are <\code{.num_components}> components in the graph.}
       |                                           ^
checkRd: (-1) tierChart.Rd:332: Lost braces
   332 |   If the input argument code{boxes} is \code{F}, the \code{lBox},
       |                             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_taxa_ridges.Rd: scale_fill_gradient, theme_ridges,
    geom_density_ridges
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found an obsolete/platform-specific call in the following function:
  ‘.my.tkdev’
Found the platform-specific device:
  ‘X11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Tlasso.fit.Rd: huge
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++14: please drop specification unless essential
checkRd: (-1) pmvn.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvn.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvn.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvt.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvt.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pmvt.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tv_episode_changes.Rd:29: Lost braces; missing escapes or markup?
    29 | This method is used in conjunction with the /tv/{id}/changes method. This method uses the episode_id value found in the change entries.
       |                                                 ^
checkRd: (-1) tv_season_changes.Rd:29: Lost braces; missing escapes or markup?
    29 | This method is used in conjunction with the /tv/{id}/changes method. This method uses the season_id value found in the change entries.
       |                                                 ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tmle.Sl.dbarts2.Rd: SuperLearner
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) pvalEffectPlot.Rd:90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:93: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pvalEffectPlot.Rd:94: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gmm.tmvnorm.Rd: gmm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘rgl’
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘position_diverge.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Get_time_entries.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) jsonStr.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Format data as a JSON object (like this: {"x": "120"}).}
       |                                                 ^
checkRd: (-1) jsonStr.Rd:18: Lost braces; missing escapes or markup?
    18 | Format data as a JSON object (like this: {"x": "120"}).
       |                                          ^
checkRd: (-1) fixed_width_no_modeling.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fixed_width_no_modeling.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fixed_width_no_modeling.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup?
    21 | Recommended range is in {5, ..., 20}.}
       |                         ^
checkRd: (-1) getSegsExtra.Rd:14: Lost braces
    14 | \item{data}{data.table returned from function /code{tdtr}}
       |                                                    ^
checkRd: (-1) ETM.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ETM.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘dat_checks.R’ ‘setters_and_getters.R’
File ‘torch/libs/torch.so’:
  Found non-API call to R: ‘DATAPTR’
File ‘torch/libs/torchpkg.so’:
  Found non-API call to R: ‘DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘response_builder.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TPACForCancer.Rd: hpa.data
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘replace_leading_whitespace.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  heartTP.Rd: heart
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) parse_beast_output_files.Rd:23: Lost braces
    23 |     item{\code{estimates}: parameter estimates}
       |         ^
checkRd: (-1) parse_beast_output_files.Rd:24-28: Lost braces
    24 |     item{
       |         ^
checkRd: (-1) parse_beast_output_files.Rd:29-31: Lost braces
    29 |     item{\code{operators}: the BEAST2 MCMC operator
       |         ^
checkRd: (-1) parse_beast_posterior.Rd:28: Lost braces
    28 |     item{\code{estimates}: parameter estimates}
       |         ^
checkRd: (-1) parse_beast_posterior.Rd:29-33: Lost braces
    29 |     item{
       |         ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Wprime.Rd: foreach
  read_directory.Rd: foreach
  smoother_control.trackeRdata.Rd: foreach
  zones.Rd: foreach
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  printLabelledValues.Rd: setOutputLevel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) Sim-Functions.Rd:99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:100-102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:108: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:109-110: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:111-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:114-116: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Sim-Functions.Rd: Logit-class, CES-class
  cournot_tariff.Rd: Cournot-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘predict.R’ ‘train.R’ ‘variables.R’
checkRd: (-1) trait_missing.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:19-20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) trait_missing.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
'::' or ':::' import not declared from: ‘devtools’
'library' or 'require' calls not declared from:
  ‘XML’ ‘devtools’ ‘jsonlite’ ‘ks’ ‘maps’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  translate.logit.Rd: multinom
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
checkRd: (-1) trtsel.Rd:69: Lost braces; missing escapes or markup?
    69 | numeric with two values {0,1} and gaussian(link = "identity") otherwise.
       |                         ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘tree_mesh.R’ ‘tree_mesh.Rd’ ‘zzz.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rpart.predict.leaves.Rd: rpart
  treeClust.Rd: rpart.control
  treeClust.dist.Rd: daisy
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ranger_surv.unify.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotGroves.Rd: s.class
  plotGrovesD3.Rd: scatterD3
  plotTreeDiff.Rd: plot.phylo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  check.decomp.Rd: Rssa
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calculate_weights.Rd’ ‘fit_msm.Rd’ ‘load_expanded_data.Rd’
    ‘save_to_csv.Rd’ ‘save_to_datatable.Rd’ ‘save_to_duckdb.Rd’
    ‘set_censor_weight_model.Rd’ ‘set_data.Rd’ ‘set_expansion_options.Rd’
    ‘set_outcome_model.Rd’ ‘set_switch_weight_model.Rd’
    ‘weight_model_data_indices.Rd’
Specified C++11: please drop specification unless essential
checkRd: (-1) coef.tridim_transformation.Rd:31: Lost braces
    31 | If summary=TRUE, a data.frame with columns "dv{index}" with mean for each dependent
       |                                               ^
checkRd: (-1) coef.tridim_transformation.Rd:32: Lost braces
    32 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                        ^
checkRd: (-1) coef.tridim_transformation.Rd:32: Lost braces; missing escapes or markup?
    32 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                                ^
checkRd: (-1) predict.tridim_transformation.Rd:24: Lost braces
    24 | If summary=TRUE, a data.frame with columns "dv{index}" with mean for each dependent
       |                                               ^
checkRd: (-1) predict.tridim_transformation.Rd:25: Lost braces
    25 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                        ^
checkRd: (-1) predict.tridim_transformation.Rd:25: Lost braces; missing escapes or markup?
    25 | variable plus optional quantiles columns with names "dv{index}_{quantile}".
       |                                                                ^
checkRd: (-1) variable_summary.Rd:18: Lost braces; missing escapes or markup?
    18 | data.frame with "{var_name}" column for the mean and
       |                  ^
checkRd: (-1) variable_summary.Rd:19: Lost braces; missing escapes or markup?
    19 | "{var_name}_{prob}" columns for each probability.
       |  ^
checkRd: (-1) variable_summary.Rd:19: Lost braces; missing escapes or markup?
    19 | "{var_name}_{prob}" columns for each probability.
       |             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  TriDimRegression-package.Rd: loo, waic
  waic.tridim_transformation.Rd: loo-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_troopdata.R’
Malformed Title field: should not end in a period.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_item_metadata.R’ ‘get_subscribed_metadata.R’
Malformed Description field: should contain one or more complete sentences.
Specified C++11: please drop specification unless essential
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘log2console’
checkRd: (-1) summary.armasubsets.Rd:16: Lost braces
    16 | \item{matrix.logical}{With matrix=TRUE, the matrix is logical TRUE/FALSE or string "*"/code{" "}}
       |                                                                                            ^
Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [127s/37s]
Running R code in ‘testthat.R’ had CPU time 3.4 times elapsed time
checkRd: (-1) tsBSS-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tsBSS-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) diss.AR.LPC.CEPS.Rd:39: Lost braces; missing escapes or markup?
    39 | If \code{order.x} or {order.y} are \code{NULL}, their respective series will be fitted automatically using a AR model.
       |                      ^
checkRd: (-1) diss.AR.PIC.Rd:31: Lost braces; missing escapes or markup?
    31 | If \code{order.x} or {order.y} are \code{NULL}, their respective series will be fitted automatically using a AR model. If \code{permissive} is \code{TRUE} and no AR order is found automatically, an AR order of 1 will be imposed, if this case fails, then no order can be found and the function produces an error.
       |                      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  diss.DTWARP.Rd: pdc
  diss.FRECHET.Rd: longitudinalData
  diss.PDC.Rd: pdc
  diss.Rd: pdc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_distance.R’ ‘reason_dataleaks.R’ ‘viz_dataleaks.R’
checkRd: (-1) TempDisaggDGP.Rd:79: Escaped LaTeX specials: \&
checkRd: (-1) disaggregate.Rd:56: Escaped LaTeX specials: \&
checkRd: (-1) example.database2.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) example.database2.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) example.database3.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) example.database3.Rd:19: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘benchmark.R’ ‘print.R’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  density.Rd: networkDynamic
  durations.Rd: net.obs.period, as.data.frame.networkDynamic,
    get.vertex.activity
  incidence.Rd: networkDynamic
  plotpath.Rd: plot.network
  tDegree.Rd: networkDynamic
  tErgmStats.Rd: networkDynamic, network.collapse
  tSnaStats.Rd: network.collapse
  tiedDuration.Rd: networkDynamic
  timeProjectedNetwork.Rd: networkDynamic, network.collapse,
    get.networks, network
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘centrality.R’ ‘compare_gvar.R’ ‘posterior_plot.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ts_maintune.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  arimapar-deprecated.Rd: auto.arima
  arimapred.Rd: auto.arima
  fittestArima.Rd: auto.arima, forecast
  fittestArimaKF.Rd: predict.SSModel, SSMarima, KFAS, auto.arima,
    SSModel, AICc
  fittestEMD.Rd: AICc
  fittestLM.Rd: AICc
  fittestMAS.Rd: ets, stlf, AICc
  fittestPolyR.Rd: dredge, AICc
  fittestPolyRKF.Rd: SSModel, KFAS, fitSSM, AICc
  fittestWavelet.Rd: ets, AICc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) repr_dwt.Rd:28: Lost braces; missing escapes or markup?
    28 | The final representation has length equal to floor(n / 2^{level}), where n is a length of original time series.
       |                                                          ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘berkowitz.R’ ‘dac.R’ ‘gmm.R’ ‘hongli.R’ ‘minzar.R’ ‘nyblom.R’
    ‘shortfall_de.R’ ‘signbias.R’ ‘var.R’ ‘var_cp.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  FULLoption.Rd: impute, local.trend, mannKen, seasonTrend, seaKen
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotmatch.Rd: ppp
  sumppdist.Rd: ppp, solist
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ttScreening-package.Rd: sva
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tufte_handout.Rd: pdf_document, html_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘show_parliament.R’ ‘show_province_and_party.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  coef.mtvgarch.Rd: zoo, garchx
  coef.tvgarch.Rd: zoo
  coef.tvgarchTest.Rd: zoo
  mtvgarch.Rd: zoo, garchx
  mtvgarchSim.Rd: zoo, garchx
  tvgarch.Rd: zoo, garchx
  tvgarchObj.Rd: zoo
  tvgarchSim.Rd: zoo, garchx
  tvgarchTest.Rd: zoo, garchx
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  dx.wts.mediation.Rd: ps
  wgtmed.Rd: gbm, ps, twang
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) tweedie-internal.Rd:74: Lost braces
    74 |         doi{10.1093/biomet/74.2.221}
       |            ^
Specified C++11: please drop specification unless essential
checkRd: (-1) twosigmag.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:90: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:91: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twosigmag.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) twoway.Rd:66: Lost braces
    66 | code{\link{twoway.formula}}, code{\link[stats]{medpolish}}
       |     ^
checkRd: (-1) twoway.Rd:66: Lost braces
    66 | code{\link{twoway.formula}}, code{\link[stats]{medpolish}}
       |                                  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |  ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |               ^
checkRd: (-1) est_g_exp.Rd:55: Lost braces; missing escapes or markup?
    55 |  {A - delta}, {A + delta}, and {A + 2 * delta}).
       |                                ^
File ‘typetracer/libs/typetracer.so’:
  Found non-API call to R: ‘SET_BODY’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) cambodia.Rd:47: Lost braces
    47 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
checkRd: (-1) microdata.Rd:33: Lost braces
    33 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
checkRd: (-1) u5mr_cohort.Rd:111: Lost braces
   111 | (\doi{10.1371/journal.pmed.1000253}{10.1371/journal.pmed.1000253})
       |                                    ^
Problems with news in ‘NEWS.md’:
No news entries found.
Specified C++11: please drop specification unless essential
possible bashism in configure.ac line 34 (should be 'b = a'):
  dnl if test "${ac_cv_lib_expat_XML_ParserCreate}" == yes; then
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  associationsDiamondPlot.Rd: ggplot
  basicDiamondplotFunctions.Rd: geom_polygon, geom_jitter, ggplot
  biAxisDiamondPlot.Rd: ggplot
  comparisonDiamondPlots.Rd: gtable
  diamondPlot.Rd: ggplot
  ggBoxplot.Rd: ggplot, geom_boxplot
  ggEasyPlots.Rd: ggplot, geom_ridgeline, geom_bar
  ggProportionPlot.Rd: linetype, ggplot2
  ggqq.Rd: ggplot
  knitFig.Rd: ggplot, knit_expand, knit
  meanSDtoDiamondPlot.Rd: ggplot
  meansDiamondPlot.Rd: ggplot
  pwr.omegasq.Rd: pwr.anova.test, pwr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  html_imetropolis.Rd: html_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    uktrans_get is fixed when start_date is used (#2)
    Extra layer of of NULL returns to fail gracefully with an informative message.
    Removed travis & appveyor and using gh_actions instead.
    Using gh-pages to create the pkgdown website.
    Create an app as vignette page to search with the help of uklr.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘augment_gazetteer.Rd’ ‘locate_event.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘readtextgrid.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘annotate_mf.R’ ‘annotate_mf_all.R’
checkRd: (-1) reg_1d.Rd:42: Lost braces; missing escapes or markup?
    42 |         \item Metric input is not in {1,2,3}: Metric does not exist
       |                                      ^
checkRd: (-1) reg_2d.Rd:33: Lost braces; missing escapes or markup?
    33 |         \item Metric input is not in {1,2,3}: Metric does not exist
       |                                      ^
Specified C++11: please drop specification unless essential
checkRd: (-1) simRedCard.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) simRedCard.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘runm.Rd’ ‘unm_summary.R’
checkRd: (-1) UNPaC_Copula.Rd:59: Lost braces; missing escapes or markup?
    59 | \item{\code{selected_features}}: {A vector of integers indicating the features retained by the feature filtering process.}
       |                                  ^
checkRd: (-1) UNPaC_Copula.Rd:60: Lost braces; missing escapes or markup?
    60 | \item{\code{sim_CI}}: {vector containing the cluster indices for each generated unimodal reference distribution}
       |                       ^
checkRd: (-1) UNPaC_Copula.Rd:61-62: Lost braces
    61 | \item{\code{pvalue_emp}}: {the empirical p-value:  the proportion of times the cluster index from the reference
       |                           ^
checkRd: (-1) UNPaC_Copula.Rd:63: Lost braces; missing escapes or markup?
    63 | \item{\code{pvalue_norm}}: {the normalized p-value: the simulated p-value based on comparison to a standard normal distribution }
       |                            ^
checkRd: (-1) UNPaC_num_clust.Rd:58-62: Lost braces
    58 | \item{\code{BestK}}: {A matrix with 1 row and 4 columns named: "Max_CI","Max_CI_wi_1SE","Max_scaled_CI" and "Max_logWCSS_wi_1SE".
       |                      ^
checkRd: (-1) UNPaC_num_clust.Rd:63-65: Lost braces
    63 | \item{\code{full_process}}: {A matrix containing the number of clusters, K, evaluated, the CI from the data, the average CI from the null
       |                             ^
checkRd: (-1) UNPaC_num_clust.Rd:66: Lost braces; missing escapes or markup?
    66 | \item{\code{selected_features}}: {A vector of integers indicating the features retained by the feature filtering process.}}
       |                                  ^
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘available_version.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  UpDown.Rd: normalmixEM, mclust
  UpDownApp.Rd: shiny, ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  barplot_hp.Rd: rdacca.hp
  upset_vp.Rd: rdacca.hp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) encoder.Rd:32-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) encoder.Rd:38-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) encoder.Rd:45-48: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘county_complete.Rd’ ‘fatal_police_shootings.Rd’ ‘gerrymander.Rd’
    ‘pierce_county_house_sales.Rd’ ‘pop_age_2019.Rd’ ‘pop_race_2019.Rd’
    ‘state_stats.Rd’ ‘us_temp.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘intersection_powerset.R’ ‘powerset_icounts.Rd’ ‘pr.R’ ‘pr.boot.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘usgas.Rd’
checkRd: (-1) aosat.Rd:20: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) aosat.Rd:21: Escaped LaTeX specials: \_
checkRd: (-1) arctic.oscillations.Rd:19: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) arctic.oscillations.Rd:20: Escaped LaTeX specials: \_
checkRd: (-1) babies.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) babies.Rd:41: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:43: Escaped LaTeX specials: \$
checkRd: (-1) cabinet.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) exec.pay.Rd:5: Escaped LaTeX specials: \$
checkRd: (-1) sp500.excess.Rd:4: Escaped LaTeX specials: \&
checkRd: (-1) sp500.excess.Rd:6: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  usl.Rd: nlxb, nlsr
  usl.solve.nlxb.Rd: nlxb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Unexported objects imported by ':::' calls:
  ‘usmapdata:::alaska_bbox’ ‘usmapdata:::ea_crs’
  ‘usmapdata:::hawaii_bbox’ ‘usmapdata:::transform_alaska’
  ‘usmapdata:::transform_hawaii’
  See the note in ?`:::` about the use of this operator.
Malformed Title field: should not end in a period.
File ‘utf8/libs/utf8.so’:
  Found ‘__vsprintf_chk’, possibly from ‘vsprintf’ (C)
    Object: ‘libcutf8lite.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘build_model.coxph.Rd’ ‘build_table.coxph.Rd’ ‘build_table.lm.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cusum_failure.Rd’ ‘cusum_loglike.Rd’ ‘cusum_ome.Rd’ ‘cusum_sprt.Rd’
    ‘paste.R’
Specified C++11: please drop specification unless essential
checkRd: (-1) partition_fold.Rd:21-22: Lost braces
    21 |    \code{train}{The mldr dataset with train examples, that includes all
       |                ^
checkRd: (-1) partition_fold.Rd:23-24: Lost braces
    23 |    \code{test}{The mldr dataset with test examples, defined by the
       |               ^
checkRd: (-1) partition_fold.Rd:25-26: Lost braces
    25 |    \code{validation}{Optionally, only if \code{has.validation = TRUE}.
       |                     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  utiml.Rd: mldr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘estimate_accuracy.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘benchmark_event.R’ ‘benchmark_event.Rd’ ‘benchmark_score.R’
    ‘benchmark_score.Rd’ ‘benchmark_time.R’
    ‘compare_means_between_groups.R’ ‘compare_means_between_groups.Rd’
    ‘compare_means_within_groups.R’ ‘compare_rates_between_groups.R’
    ‘compare_rates_between_groups.Rd’ ‘compare_rates_within_groups.R’
    ‘get_concordant_discordant_pairs.R’
    ‘get_confidence_intervals_within_groups.R’
    ‘table_observed_expected.R’ ‘test_chisq_one.R’ ‘test_chisq_one.Rd’
    ‘test_chisq_two.Rd’ ‘test_fisher.Rd’ ‘test_mcnemar.R’
    ‘test_n_1_prop.R’ ‘test_n_1_prop.Rd’ ‘test_t.R’ ‘test_t_paired.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_surv.Rd’
Found the following files/directories:
  ‘PredValidationPlots.pdf’ ‘RepStructValidationPlots.pdf’
checkRd: (-1) sendTasks.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sendTasks.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  detect_boundary_cat.Rd: validator
  detect_boundary_num.Rd: validator
  detect_fixed_variables.Rd: validator
  detect_infeasible_rules.Rd: validator
  detect_redundancy.Rd: validator
  is_contradicted_by.Rd: validator
  is_implied_by.Rd: validator
  is_linear.Rd: validator
  make_feasible.Rd: validator
  remove_redundancy.Rd: validator
  simplify_conditional.Rd: validator
  simplify_fixed_variables.Rd: validator
  simplify_rules.Rd: validator
  validatetools.Rd: validate
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘datasets.R’
checkRd: (-1) sample_gen.Rd:18: Lost braces; missing escapes or markup?
    18 | Generate \code{n} random samples from multivariate Gaussian distribution N(0, (L^TL)^{-1})
       |                                                                                      ^
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) vardannual.Rd:97: Lost braces
    97 | \item{ID_level2}{Optional}{variable for unit ID codes. One dimensional object convertible to one-column \code{data.table} or variable name as character, column number.}
       |                           ^
checkRd: (-1) vardannual.Rd:99: Lost braces
    99 | \item{dataset}{Optional}{survey data object convertible to \code{data.table}.}
       |                         ^
checkRd: (-1) vardcrospoor.Rd:122: Lost braces
   122 | \item{ind_gr}{Optional}{variable by which divided independently X matrix of the auxiliary variables for the calibration. One dimensional object convertible to one-column \code{data.table} or variable name as character, column number.}
       |                        ^
checkRd: (-1) vardcrospoor.Rd:124: Lost braces
   124 | \item{use.estVar}{Logical}{value. If value is \code{TRUE}, then \code{R} function \code{estVar} is used for the  estimation of covariance matrix of the residuals. If value is \code{FALSE}, then \code{R} function \code{estVar} is not used for the estimation of covariance matrix of the residuals.}
       |                           ^
checkRd: (-1) vardom_othstr.Rd:69: Lost braces
    69 | \item{percentratio}{Positive}{numeric value. All linearized variables are multiplied with \code{percentratio} value, by default - 1.}
       |                              ^
checkRd: (-1) varpoord.Rd:121: Lost braces
   121 | \item{month_at_work}{Variable}{for total number of month at work (sum of the number of months spent at full-time work as employee, number of months spent at part-time work as employee, number of months spent at full-time work as self-employed (including family worker), number of months spent at part-time work as self-employed (including family worker)).  One dimensional object convertible to one-column \code{data.table} or variable name as character, column number.}
       |                               ^
checkRd: (-1) betaburr.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Burr distribution due to Parana\'{i}ba et al. (2011) given by
       |                                                                                                                        ^
checkRd: (-1) betafrechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the beta Fr\'{e}chet distribution due to Barreto-Souza et al. (2011) given by
       |                                                                                           ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                      ^
checkRd: (-1) frechet.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Fr\'{e}chet distribution due to Fr\'{e}chet (1927) given by
       |                                                                                                                      ^
checkRd: (-1) kumburr7.Rd:7: Lost braces
     7 | \description{Computes the pdf, cdf, value at risk and expected shortfall for the Kumaraswamy Burr XII distribution due to Parana\'{i}ba et al. (2013) given by
       |                                                                                                                                   ^
checkRd: (-1) simulateDCSIS.Rd:40: Lost braces
    40 |        Y = 6*X1 + 1.5*X2  + 9*1{X12 < 0} + exp(2*X22)*e
       |                                ^
checkRd: (-1) simulateDCSIS.Rd:42: Lost braces
    42 |        Y = 6*X1 + 1.5*X2  + 9*1{X12 < 0} + 6*X22 + e
       |                                ^
checkRd: (-1) get.miniseq.sample.files.Rd:15: Lost braces
    15 | \item{file.suffix}{Regex expression for end of file name. For example, `file.suffix = '_S\\d{1,2}_.*_R1_.*'` will match R1 files.1 files.}
       |                                                                                             ^
checkRd: (-1) randomVarImpsRFplot.Rd:97: Escaped LaTeX specials: \&
checkRd: (-1) varSelImpSpecRF.Rd:83: Escaped LaTeX specials: \&
checkRd: (-1) Acoef_sh.Rd:23: Lost braces; missing escapes or markup?
    23 | The function returns the K-by-K matrices {A_1, ..., A_p} as a list object.
       |                                          ^
checkRd: (-1) VARshrink.Rd:58: Lost braces; missing escapes or markup?
    58 | Consider VAR(p) model: y_t = A_1 y_{t-1} + ... + A_p y_{t-p} + C d_t + e_t,
       |                                    ^
checkRd: (-1) VARshrink.Rd:58: Lost braces; missing escapes or markup?
    58 | Consider VAR(p) model: y_t = A_1 y_{t-1} + ... + A_p y_{t-p} + C d_t + e_t,
       |                                                        ^
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) decomposition.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) decomposition.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |      ^
checkRd: (-1) moving.decomposition.Rd:28: Lost braces
    28 | \item{W2}{nxn matrix of weights. Season is estimated as W2 \%}\% y, if y is the data vector}
       |          ^
checkRd: (-1) moving.estimation.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) moving.estimation.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘vineCopulas.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BB1Copula-class.Rd: VineCopula-package, joeCopula-class
  BB1Copula.Rd: joeCopula, VineCopula-package
  BB6Copula-class.Rd: VineCopula-package, joeCopula-class
  BB6Copula.Rd: joeCopula, VineCopula-package
  BB7Copula-class.Rd: VineCopula-package, joeCopula-class
  BB7Copula.Rd: joeCopula, VineCopula-package
  BB8Copula-class.Rd: VineCopula-package, joeCopula-class
  BB8Copula.Rd: joeCopula, VineCopula-package
  BiCop2copula.Rd: copula-class, VineCopula-package, BiCop
  ddCopula.Rd: dCopula, pCopula
  joeBiCopula-class.Rd: VineCopula-package, copula-package,
    joeCopula-class
  joeBiCopula.Rd: copula-package, joeCopula-class, VineCopula-package
  surClaytonCopula-class.Rd: VineCopula-package
  surClaytonCopula.Rd: VineCopula-package
  surGumbelCopula-class.Rd: VineCopula-package
  surGumbelCopula.Rd: VineCopula-package
  tawnT1Copula-class.Rd: VineCopula-package
  tawnT1Copula.Rd: VineCopula-package
  tawnT2Copula-class.Rd: VineCopula-package
  tawnT2Copula.Rd: VineCopula-package
  vineCopula-class.Rd: VineCopula-package, RVineMatrix
  vineCopula.Rd: RVineMatrix, VineCopula-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  lmerMatrices.Rd: lmer
  lmerSummary.Rd: lmer
  remlMM.Rd: lmer
  remlVCA.Rd: lmer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) datasets.Rd:15: Lost braces
    15 | and dimension information (\code{dim} or code{length}) of each item,
       |                                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mcaplot.Rd: multilines
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘vctrs/libs/vctrs.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘ENCLOS’, ‘EXTPTR_PROT’,
    ‘EXTPTR_TAG’, ‘FORMALS’, ‘FRAME’, ‘HASHTAB’, ‘IS_S4_OBJECT’,
    ‘LEVELS’, ‘OBJECT’, ‘PRENV’, ‘PRVALUE’, ‘R_PromiseExpr’,
    ‘Rf_allocSExp’, ‘Rf_findVarInFrame3’, ‘SETLENGTH’, ‘SET_BODY’,
    ‘SET_CLOENV’, ‘SET_ENCLOS’, ‘SET_FORMALS’, ‘SET_GROWABLE_BIT’,
    ‘SET_S4_OBJECT’, ‘SET_TRUELENGTH’, ‘STDVEC_DATAPTR’, ‘STRING_PTR’,
    ‘TRUELENGTH’, ‘UNSET_S4_OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.spv.Rd: stat_binhex, grid.arrange, ggplot
  vdg-package.Rd: theme
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  applyTransformation.Rd: sp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_pfi.Rd’ ‘plot_pc_directions.Rd’ ‘prep_testing_data.Rd’
    ‘prep_training_data.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  count_taxa.Rd: taxlist-class
  make_cocktail.Rd: taxlist-class
  subset.Rd: taxlist-class
  summary.Rd: taxlist-class
  tv2vegtable.Rd: taxlist-class, read.dbf
  used_synonyms.Rd: get_children, get_parents, taxlist-class,
    accepted_name
  vegtable-class.Rd: taxlist-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) additiveBeta.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) additiveBeta.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) downloadPBDB.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) multiplicativeBeta.Rd:33: Lost braces in \itemize; meant \describe ?
File ‘versus/libs/versus.so’:
  Found non-API call to R: ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  blobness3D.Rd: nifti
  gradient3D.Rd: nifti
  hessian3D.Rd: nifti
  vesselness3D.Rd: nifti
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) ex121.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex124.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex125.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex127.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex32.Rd:18: Escaped LaTeX specials: \&
checkRd: (-1) ex33.Rd:18: Escaped LaTeX specials: \&
File ‘vetr/libs/vetr.so’:
  Found non-API calls to R: ‘ENCLOS’, ‘FORMALS’, ‘IS_S4_OBJECT’,
    ‘R_lsInternal’, ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
checkRd: (-1) VirtualArray-single-bracket-method.Rd:6: Lost braces
     6 | \title{Indexing to extract subsets of a 'code{\link[via:XArray-class]{VirtualArray}}'-class object}
       |                                              ^
checkRd: (-1) subset.Rd:20: Lost braces
    20 | \item{drop}{\code{logical} in case the result of subsetting is a single element, should the \\code{\link[via:XArray-class]{VirtualArray}} wrapper be dropped?}
       |                                                                                                   ^
checkRd: (-1) vic_param.Rd:311: Lost braces
   311 | albedo must be supplied in code{forcing_veg}. Default = 1.}
       |                                ^
checkRd: (-1) vic_param.Rd:323: Lost braces
   323 | supplied in code{forcing_veg}. Default = 1.}
       |                 ^
checkRd: (-1) vic_param.Rd:341: Lost braces
   341 | be supplied in code{forcing_veg} Default = 0.}
       |                    ^
checkRd: (-1) show_query.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) show_query.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) show_query.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vietnamcode_data.Rd:16: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘functions_upload.R’ ‘mod_hidecan.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bootstrap_se.Rd: boot
  cv_vim.Rd: boot
  vim.Rd: boot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  regressionImp.Rd: lmrob, glmrob
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘knn_domain_score.R’ ‘knn_domain_score.Rd’ ‘mars_domain_score.R’
    ‘mars_domain_score.Rd’ ‘nn_domain_score.R’ ‘nn_domain_score.Rd’
    ‘normalized_domain_plot.R’ ‘normalized_domain_plot.Rd’
    ‘rf_domain_score.R’ ‘simple_domain_plot.R’ ‘simple_domain_plot.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘glob_cr_vis.Rd’ ‘glob_cub_vis.R’ ‘glob_knn_vis.R’ ‘glob_knn_vis.Rd’
    ‘glob_nn_vis.R’ ‘glob_nn_vis.Rd’ ‘viralx_knn.R’ ‘viralx_knn_glob.R’
    ‘viralx_knn_glob.Rd’ ‘viralx_knn_shap.R’ ‘viralx_knn_vis.R’
    ‘viralx_mars.R’ ‘viralx_mars.Rd’ ‘viralx_mars_shap.R’
    ‘viralx_mars_shap.Rd’ ‘viralx_mars_vis.R’ ‘viralx_mars_vis.Rd’
    ‘viralx_nn.R’ ‘viralx_nn.Rd’ ‘viralx_nn_glob.R’ ‘viralx_nn_glob.Rd’
    ‘viralx_nn_shap.R’ ‘viralx_nn_shap.Rd’ ‘viralx_nn_vis.R’
    ‘viralx_nn_vis.Rd’
checkRd: (-1) viridis.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:24-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:31-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) viridis.map.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePopulation.Rd:75: Lost braces; missing escapes or markup?
    75 |   \item \strong{Pollen productivity}: In each time step the model computes the pollen productivity (in relative values) of the population using the equation \eqn{P_{t} = \sum x_{it} \times max(S_{t}, B)}, where \emph{t} is time (a given simulation time step), \emph{P} is the pollen productivity of the population at a given time, \emph{x_{i}} represents the biomass of every adult individual, \emph{S} is the environmental suitability at the given time, \emph{B} is the contribution of biomass to pollen productivity regardless of environmental suitability (\emph{pollen.control} parameter in the simulation, 0 by default). If \emph{B} equals 1, \emph{P} is equal to the total biomass sum of the adult population, regardless of the environmental suitability. If \emph{B} equals 0, pollen productivity depends entirely on environmental suitability values.
       |                                                                                                                                                                                                                                                                                                                                                    ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  parametersCheck.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  virtualspecies-package.Rd: terra, ade4, rnaturalearth
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) compdesc.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) compdesc.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) ViSiElse.Rd:101-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:102: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:104: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:105-106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:108-127: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:112-113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:114-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:116: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:128-134: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:135-147: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:148-157: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:152-153: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSiElse.Rd:154-155: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ViSibook-class.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dim-ViSibook-methods.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) dim-ViSibook-methods.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary-ViSigrid-methods.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary-ViSigrid-methods.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  visSave.Rd: saveWidget
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘vistla/libs/vistla.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Specified C++11: please drop specification unless essential
checkRd: (-1) getTurnType.Rd:38: Lost braces; missing escapes or markup?
    38 | Return one of {Vocalisation, GrpVocalisation, ...} or identifier.
       |               ^
File ‘volesti/libs/volesti.so’:
  Found ‘exit’, possibly from ‘exit’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘printf’, possibly from ‘printf’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘putchar’, possibly from ‘putchar’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘sprintf’, possibly from ‘sprintf’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’
  Found ‘vsprintf’, possibly from ‘vsprintf’ (C)
    Object: ‘external/lpsolve/build/lp_solve/liblp_solve.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Problems with news in ‘NEWS.md’:
No news entries found.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    vortexRdata pre-1.0.3
Unknown package ‘rtweet’ in Rd xrefs
checkRd: (-1) compute.means.Rd:23: Escaped LaTeX specials: \&
checkRd: (-1) norm.wattfabricius.Rd:5: Escaped LaTeX specials: \&
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ctd_cast.Rd: ctdFindProfiles
  vpr_manual_classification.Rd: image_scale
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘vroom/libs/vroom.so’:
  Found non-API calls to R: ‘DATAPTR’, ‘SETLENGTH’, ‘SET_TRUELENGTH’,
    ‘STDVEC_DATAPTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  vscc.Rd: teigen, Mclust
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  vsd.Rd: ggplot2, Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  VSOLassoBag.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) Data-Examples.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Data-Examples.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data-Examples.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Data.trafo.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Toep.estimator.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aquaporin.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vsts_create_release.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vsts_create_release.Rd:34: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  VSURF.Rd: randomForest
  VSURF_interp.Rd: randomForest
  VSURF_pred.Rd: randomForest
  VSURF_thres.Rd: randomForest
  predict.VSURF.Rd: randomForest, predict.randomForest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
checkRd: (-1) WACS.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACS.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) WACSreadAgroclim.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) WACSreadAgroclim.Rd:16-17: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘walkscore.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  warn.Rd: kde2d, width.SJ
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘warp/libs/warp.so’:
  Found non-API calls to R: ‘OBJECT’, ‘Rf_findVarInFrame3’,
    ‘STRING_PTR’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘flextable.R’ ‘washi_flextable.Rd’ ‘washi_scale.Rd’ ‘washi_theme.Rd’
'::' or ':::' import not declared from: ‘NPRED’
'library' or 'require' call not declared from: ‘NPRED’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotParam.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette.Rnw’ using Sweave
GET:https://waterservices.usgs.gov/nwis/dv/?format=waterml,2.0&site=05054000&parameterCd=00060&statCd=00003&startDt=2000-01-01&endDt=2010-12-31

Error: processing vignette 'vignette.Rnw' failed with diagnostics:
 chunk 1 
Error in httr2::req_perform(obs_url) : Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [waterservices.usgs.gov]: Connection timed out after 10002 milliseconds

--- failed re-building ‘vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘vignette.Rnw’

Error: Vignette re-building failed.
Execution halted
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  waterfallchart.Rd: barchart, bwplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) anchor_points_grey.Rd:9: Lost braces
     9 | Zeeden et al., (2013) and anchored to the code{\link{astrosignal_example}} \cr
       |                                               ^
checkRd: (-1) retrack_wt_MC.Rd:206: Lost braces
   206 | be off in certain intervals. the link[WaverideR]{retrack_wt_MC} mitigates
       |                                                 ^
checkRd: (-1) retrack_wt_MC.Rd:40: Lost braces
    40 | link[WaverideR]{analyze_wavelet} wavelet function
       |                ^
checkRd: (-1) retrack_wt_MC.Rd:41: Lost braces
    41 | To create a list use the link[base]{list} function}
       |                                    ^
checkRd: (-1) retrack_wt_MC.Rd:44: Lost braces
    44 | To create the matrix use the link[base]{cbind} function and only add the
       |                                        ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  loess_auto.Rd: loess.as
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following files/directories:
  ‘ReconstructedData.txt’ ‘ReconstructedDataStDev.txt’
  ‘ResampledReconstructions.txt’
  ‘ResampledReconstructionsStandardVariation.txt’
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wcep.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  WCE.Rd: coxph.control
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get_wis_raster_layer.Rd: get_map_layer
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) get_cid.Rd:58-59: Lost braces
    58 | <structure search> is assembled as "{\code{substructure} |
       |                                     ^
checkRd: (-1) get_cid.Rd:59-60: Lost braces
    59 | \code{superstructure} | \code{similarity} | \code{identity}} / {\code{smiles}
       |                                                                ^
checkRd: (-1) get_cid.Rd:70-71: Lost braces
    70 | "{\code{fastidentity} | \code{fastsimilarity_2d} | \code{fastsimilarity_3d} |
       |  ^
checkRd: (-1) get_cid.Rd:71-72: Lost braces
    71 | \code{fastsubstructure} | \code{fastsuperstructure}}/{\code{smiles} |
       |                                                      ^
checkRd: (-1) Session.Rd:146: Lost braces
   146 | sQuote{page load} timeout specifies a time to wait for the page loading
       |       ^
checkRd: (-1) busTrace.Rd:15: Lost braces
    15 | /href{https://crawdad.org/coppe-ufrj/RioBuses/20180319/}
       |      ^
Specified C++11: please drop specification unless essential
checkRd: (-1) WeightedROC.Rd:10: Lost braces; missing escapes or markup?
    10 | integer/numeric with values all in {0=negative,1=positive} or
       |                                    ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
    11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
       | ^
checkRd: (-1) WeightedROC.Rd:11: Lost braces; missing escapes or markup?
    11 | {1=negative,2=positive} or {-1=negative,1=positive}.}
       |                            ^
checkRd: (-1) CLIC.Rd:149: Lost braces
   149 | Composite likelihood {E}{M} algorithm with applications to
       |                         ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotwtdinteraction.Rd: mice, gam, bam
  wpct.Rd: wtd.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    Major changes
    Minor changes
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_network.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘coords_from_words.R’ ‘get_available_languages.R’
    ‘words_from_coords.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘define_characteristics.Rd’ ‘define_instances.Rd’ ‘export.R’
    ‘generate_table.Rd’ ‘get_attribute_definition_function.Rd’
    ‘get_day_part.Rd’ ‘get_level_attribute_names.Rd’ ‘get_level_names.Rd’
    ‘get_table.Rd’ ‘get_table_attribute_names.Rd’ ‘get_table_csv.Rd’
    ‘get_table_rdb.Rd’ ‘get_table_xlsx.Rd’ ‘select_date_levels.Rd’
    ‘select_day_level.Rd’ ‘select_month_level.Rd’
    ‘select_quarter_level.Rd’ ‘select_semester_level.Rd’
    ‘select_time_level.Rd’ ‘select_week_level.Rd’ ‘select_year_level.Rd’
    ‘set_attribute_definition_function.Rd’ ‘set_day_part.Rd’
    ‘set_table_attribute_names.Rd’ ‘week.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  download_img_data.Rd: img_data
  smooth_hist.Rd: gam
  whitestripe_ind_to_mask.Rd: writeNIfTI
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) get_geo_box.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_box.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:29-30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_geo_entity.Rd:33-34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) milakes.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) milakes.Rd:22: Lost braces in \itemize; meant \describe ?
Running examples in ‘wikiprofiler-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: wpplot
> ### Title: Input specific wikipathways ID to get an output in class of
> ###   wpplot.
> ### Aliases: wpplot
> 
> ### ** Examples
> 
> if (yulab.utils::has_internet())
+    wpplot('WP179') 
Warning in (function (con = stdin(), n = -1L, ok = TRUE, warn = TRUE, encoding = "unknown",  :
  incomplete final line found on 'https://www.wikipathways.org/wikipathways-assets/pathways/WP179/WP179.svg'
Error in rsvg::rsvg_nativeraster(f) : 
  Failed to parse svg: XML parse error: Error domain 1 code 77 on line 1 column 294913 of data: Premature end of data in tag g line 1
Calls: <Anonymous> ... annotation_custom -> layer -> as.grob -> as.grob.wpplot -> <Anonymous>
Execution halted
checkRd: (-1) secondDerivative.Rd:14: Lost braces
    14 | This must be a function of the form FUN <- function(x, ...){...}
       |                                                            ^
checkRd: (-1) windAC.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) windAC.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) windAC.Rd:33: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘general_gd.R’ ‘plot_gd.R’ ‘window_gd.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plotComb.Rd: hdi
  plot_Bwiqid.Rd: postPlot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wkt_plot.Rd: wkt, wkb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  WoodburyMatrix-class.Rd: Matrix-class, symmetricMatrix-class
  solve-methods.Rd: Matrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) word2vec_similarity.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) word2vec_similarity.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wordpiece_cache_dir.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wordpiece_cache_dir.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) wordpiece_cache_dir.Rd:20-21: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘TWP.Rd’
'library' or 'require' call not declared from: ‘shiny’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DSM_TermContextMatrix.Rd: dgCMatrix-class
  as_distmat.Rd: sparseMatrix
  dsm.Rd: sparseMatrix-class, dMatrix-class
  dsm_canonical_matrix.Rd: dgTMatrix-class, dgCMatrix-class,
    denseMatrix-class
  dsm_projection.Rd: sparsesvd
  rsvd.Rd: sparsesvd
  signcount.Rd: Matrix, dgeMatrix-class, dgCMatrix-class,
    dgRMatrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  wflow_build.Rd: rmarkdown
  wflow_git_commit.Rd: git2r
  wflow_git_config.Rd: git2r
  wflow_git_pull.Rd: git2r
  wflow_git_push.Rd: git2r
  wflow_post_knit.Rd: rmarkdown
  wflow_pre_knit.Rd: rmarkdown
  wflow_pre_processor.Rd: rmarkdown
  wflow_remove.Rd: git2r
  wflow_rename.Rd: git2r
  wflow_start.Rd: git2r
  wflow_status.Rd: git2r
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Malformed Description field: should contain one or more complete sentences.
Malformed Description field: should contain one or more complete sentences.
Malformed Description field: should contain one or more complete sentences.
Malformed Title field: should not end in a period.
checkRd: (-1) createDemandSite.Rd:26: Lost braces
    26 |   \item{suppliers}{(optional) A list of object(s) inherited from the folowing classes: \code{\link[WRSS]{createAquifer}}, \code{\link[WRSS]{createRiver}}, \code{\link[WRSS]{createReservoir}}, code{\link[WRSS]{createDiversion}}.}
       |                                                                                                                                                                                                     ^
checkRd: (-1) createDemandSite.base.Rd:26: Lost braces
    26 |   \item{suppliers}{(optional) A list of object(s) inherited from the folowing classes: \code{\link[WRSS]{createAquifer}}, \code{\link[WRSS]{createRiver}}, \code{\link[WRSS]{createReservoir}}, code{\link[WRSS]{createDiversion}}.}
       |                                                                                                                                                                                                     ^
checkRd: (-1) createDemandSite.default.Rd:32: Lost braces
    32 |   \item{suppliers}{(optional) A list of object(s) inherited from the folowing classes: \code{\link[WRSS]{createAquifer}}, \code{\link[WRSS]{createRiver}}, \code{\link[WRSS]{createReservoir}}, code{\link[WRSS]{createDiversion}}.}
       |                                                                                                                                                                                                     ^
Specified C++11: please drop specification unless essential
checkRd: (-1) wtest.Rd:61-64: Lost braces
    61 | {When \code{w.order} =2, the \code{wtest()} will automatically calculate the main effect first and then do a pre-filter before calculating interactions.
       | ^
checkRd: (-1) wtest.high.Rd:61-64: Lost braces
    61 | {When \code{w.order} > 2, the \code{wtest()} will automatically calculate the main effect first and then do a pre-filter before calculating interactions.
       | ^
checkRd: (-1) batch_modwt_wvar_cpp.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) batch_modwt_wvar_cpp.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) batch_modwt_wvar_cpp.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3_robust.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3_robust.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_eta3_robust.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_wave_variance.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_wave_variance.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ci_wave_variance.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modwt_wvar_cpp.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modwt_wvar_cpp.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) modwt_wvar_cpp.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wvar_cpp.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wvar_cpp.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wvar_cpp.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:58-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:65-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) exploreSignatures.Rd:67-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generateData.Rd:47: Lost braces
    47 | \bold{code{data}} \tab the generated data \cr
       |           ^
checkRd: (-1) generateData.Rd:53: Lost braces
    53 | Refer to \bold{\emph{code{\link{retrieveDataFactory}}}} and to
       |                          ^
checkRd: (-1) qualifyFunctionArguments.Rd:14: Lost braces
    14 | A emph{\code{list}} with following names
       |       ^
checkRd: (-1) qualifyFunctionArguments.Rd:26: Lost braces
    26 | \item{code{arguments}}{a \code{pairList} of argument names and values.
       |           ^
checkRd: (-1) completeManualPage.Rd:12: Lost braces
    12 | See \emph{\bold{code{\link{ProcessingContext}}}}. Only
       |                     ^
checkRd: (-1) produceAllManualPagesFromObject.Rd:14: Lost braces
    14 | See \emph{\bold{\\code{\link{ProcessingContext}}}}.}
       |                       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  inf_mr.Rd: httw
  moon_reader.Rd: html_document
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) xshow.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) xshow.Rd:20: Lost braces in \enumerate; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xtest.Rd: compareGrowthCurves
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) chemnet.Rd:111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) chemnet.Rd:112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knecht.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knecht.Rd:104: Lost braces in \itemize; meant \describe ?
checkRd: (-1) knecht.Rd:105: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘xgb.txt’
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fit_XCI_E_model.Rd: coxph
  fit_XCI_model.Rd: coxph
  fit_all_models.Rd: coxph
  xlink_fit.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  XML2Obs.Rd: getNodeSet
  XML2R.Rd: xmlParse, getNodeSet
  docsToNodes.Rd: getNodeSet
  nodesToList.Rd: xmlToList
  re_name.Rd: collapse
  urlsToDocs.Rd: xmlParse
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) xml_to_df.Rd:144: Lost braces; missing escapes or markup?
   144 | Default {NULL} means the workbook will not be protected with a password}
       |         ^
File ‘XML/libs/XML.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_frag.R’ ‘data_frag.R’ ‘elem.Rd’ ‘list_as_xml_document.R’
    ‘read_fragment.R’ ‘tag.R’ ‘write_xml.R’ ‘xml_fragment.R’
    ‘xmlbuilder.R’ ‘xmlbuilder.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xpose.VPC.categorical.Rd: xyplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  imDisplay.Rd: cimg
  imRead.Rd: load.image, imager, cimg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  RJulia.Rd: getInterface
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following files/directories:
  ‘xtable.html’ ‘xtable.tex’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  estimateVariance.Rd: selectiveInference
  xtune.Rd: glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) xwfGridsearch.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{iter}{Number of levels in the adaptive grid search. The resolution in b obtained is 2^{-1-iter}.}
       |                                                                                             ^
checkRd: (-1) cat_sim.Rd:110: Lost braces; missing escapes or markup?
   110 | \code{min} and {max} are mandatory for setting limits on the test length. User-defined
       |                ^
File ‘yaml/libs/yaml.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ycevo.Rd: dplyr_tidy_select
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘exhaustive_lhl.Rd’ ‘gaussian_fit.Rd’ ‘hyperbolic_fit.Rd’
checkRd: (-1) boot.yhat.Rd:3: Lost braces
     3 | \title{Bootstrap metrics produced from /code{calc.yhat}}
       |                                             ^
checkRd: (-1) boot.yhat.Rd:19: Lost braces
    19 |     Ouput of /code{lm}
       |                   ^
checkRd: (-1) boot.yhat.Rd:22: Lost braces
    22 |     Output of /code{calc.yhat}
       |                    ^
checkRd: (-1) booteval.yhat.rd:3: Lost braces
     3 | \title{Evaluate bootstrap metrics produced from /code{calc.yhat}}
       |                                                      ^
checkRd: (-1) booteval.yhat.rd:5: Lost braces
     5 |   This function evaluates the bootstrap metrics produced from /code{boot.yhat}.   
       |                                                                    ^
checkRd: (-1) combCI.rd:26: Lost braces
    26 |   This function evaluates the bootstrap metrics produced from /code{boot.yhat}.   
       |                                                                    ^
checkRd: (-1) commonality.rd:12: Lost braces
    12 |     Output from /code{aps}
       |                      ^
checkRd: (-1) dombin.rd:12: Lost braces
    12 |     Output from /code{dominance}
       |                      ^
checkRd: (-1) dominance.rd:12: Lost braces
    12 |     Output from /code{aps}
       |                      ^
checkRd: (-1) plotCI.yhat.rd:5: Lost braces
     5 |   This function plots CIs that have been produced from /code{booteval.yhat}.
       |                                                             ^
checkRd: (-1) plotCI.yhat.rd:32: Lost braces
    32 |   This function plots CIs that have been produced from /code{booteval.yhat}.   
       |                                                             ^
checkRd: (-1) plotCI.yhat.rd:35: Lost braces
    35 | This returns a plot of CIs that have been produced from /code{booteval.yhat}.
       |                                                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  boot.yhat.Rd: boot
  booteval.yhat.rd: boot
  plotCI.yhat.rd: boot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' calls not declared from:
  ‘plyr’ ‘randomForest’
File ‘yyjsonr/libs/yyjsonr.so’:
  Found non-API calls to R: ‘R_lsInternal’, ‘SETLENGTH’,
    ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘zcta.R’
'library' or 'require' calls not declared from:
  ‘coda’ ‘dlm’ ‘maps’ ‘mgcv’ ‘mnormt’ ‘mvtnorm’ ‘randomForest’ ‘rpart’
  ‘rpart.plot’ ‘sensitivity’ ‘sp’ ‘spatial’ ‘tseries’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ZenodoManager.Rd: R6Class
  ZenodoRecord.Rd: R6Class, DCEntry
  ZenodoRequest.Rd: R6Class
  zen4RLogger.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Malformed Description field: should contain one or more complete sentences.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cache_report.R’ ‘list_deposit.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  graph_pairs.Rd: graphNEL
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' calls not declared from:
  ‘crop’ ‘mvtnorm’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘deposit_stats.R’ ‘scrap_stats.R’
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
    54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
       |                                                                                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  glm.cons.Rd: glm2
  glm.fit.cons.Rd: glm.fit2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘external_fitters.Rd’ ‘zfunction.Rd’ ‘zlm.Rd’ ‘zprint.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘convert-jyear-legacy.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘notate.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  zoib.Rd: Formula
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) ZIClass.Rd:87: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:72: Escaped LaTeX specials: \_
checkRd: (-1) ZITrain.Rd:74: Escaped LaTeX specials: \_
checkRd: (-1) zid.Rd:45: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:63: Escaped LaTeX specials: \_
checkRd: (-1) zim.Rd:182: Lost braces
   182 |   dQuote{tab-delimited text file} when you have done and close the spreadsheet
       |         ^
checkRd: (-1) in.zoom.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) in.zoom.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) zm.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) update_ztable.Rd:75: Lost braces; missing escapes or markup?
    75 | must be NULL or contain only elements of {"h","t","b","p","!","H"}.}
       |                                          ^
checkRd: (-1) ztable_sub.Rd:78: Lost braces; missing escapes or markup?
    78 | must be NULL or contain only elements of {"h","t","b","p","!","H"}.
       |                                          ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Scott Fortmann-Roe <scottfr@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Scott",
                    family = "Fortmann-Roe",
                    role = c("aut", "cre"),
                    email = "scottfr@berkeley.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  xtable.A3.Rd: print.xtable
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mintu Nath <dr.m.nath@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mintu",
                    family = "Nath",
                    role = c("aut", "cre"),
                    email = "dr.m.nath@gmail.com")
as necessary.
Maintainer: ‘Florian Lerch <lerch@mathematik.uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Thrun",
                      role = "aut"),
               person(given = "Jorn",
                      family = "Lotsch",
                      role = "aut"),
               person(given = "Alfred",
                      family = "Ultsch",
                      role = "aut"),
               person(given = "Florian",
                      family = "Lerch",
                      role = "cre",
                      email = "lerch@mathematik.uni-marburg.de"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘SwissInhabitants.Rd’:
    \keyword{datasets,SwissInhabitants,SwissInhabitant [TRUNCATED]
Specified C++11: please drop specification unless essential
checkRd: (-1) abclass.Rd:133: Lost braces; missing escapes or markup?
   133 |     \code{abclass.control()} returns an object of class {abclass.control}
       |                                                         ^
checkRd: (-1) supclass.Rd:109: Lost braces; missing escapes or markup?
   109 | to solve the equivalent linear programming problem via the package {Rglpk}.
       |                                                                    ^
checkRd: (-1) supclass.Rd:110: Lost braces; missing escapes or markup?
   110 | It is recommended to use a recent version of {GLPK}.
       |                                              ^
Maintainer: ‘Abdulmonem Alsaleh <a.alsaleh@hotmail.co.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abdulmonem",
                      family = "Alsaleh",
                      role = c("cre", "aut"),
                      email = "a.alsaleh@hotmail.co.nz"),
               person(given = "Robert",
                      family = "Weeks",
                      role = "aut"),
               person(given = "Ian",
                      family = "Morison",
                      role = "aut"),
               person(family = "RStudio",
                      role = "ctb"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
gfitpca 4.609  0.017   5.443
Maintainer: ‘Jean-Michel Marin <jean-michel.marin@umontpellier.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Michel",
                      family = "Marin",
                      role = c("aut", "cre"),
                      email = "jean-michel.marin@umontpellier.fr"),
               person(given = "Louis",
                      family = "Raynal",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Pudlo",
                      role = "aut"),
               person(given = c("Christian", "P."),
                      family = "Robert",
                      role = "ctb"),
               person(given = "Arnaud",
                      family = "Estoup",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  abcrf.Rd: ranger
  covRegAbcrf.Rd: ranger
  densityPlot.Rd: ranger
  err.regAbcrf.Rd: ranger
  plot.regAbcrf.Rd: ranger
  predict.abcrf.Rd: ranger
  predict.regAbcrf.Rd: predict.ranger, ranger
  predictOOB.Rd: predict.ranger, ranger
  regAbcrf.Rd: ranger
  variableImpPlot.Rd: ranger
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  abctools-package.Rd: abc
  cov.pi.Rd: abc, postpr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Kevin M. Middleton <middletonk@missouri.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kevin", "M."),
                      family = "Middleton",
                      role = c("aut", "cre"),
                      email = "middletonk@missouri.edu"),
               person(given = "Randall",
                      family = "Pruim",
                      role = "aut",
                      email = "rpruim@calvin.edu"))
as necessary.

Found the following (possibly) invalid file URIs:
  URI: middletonk@missouri.edu
    From: man/abd-package.Rd
  URI: rpruim@calvin.edu
    From: man/abd-package.Rd
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
plot.abe       7.153  0.090  10.742
pie.abe        4.942  0.095   7.140
abe.resampling 4.275  0.142   6.794
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
detect_pk 6.954  0.012   9.724
checkRd: (-1) get_ex_data.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_ex_data.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_ex_data.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_ex_data.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_results.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_results.Rd:30: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
energyVIZ 4.595  0.323   5.994
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
buildScoreCache 4.387  0.171   5.631
Maintainer: ‘Jose Jimenez <jose@jimenezluna.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jose",
                    family = "Jimenez",
                    role = c("aut", "cre"),
                    email = "jose@jimenezluna.com")
as necessary.
Maintainer: ‘Matthew Kumar <mattkumar@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Kumar",
                    role = c("aut", "cre"),
                    email = "mattkumar@gmail.com")
as necessary.
Maintainer: ‘Adam J. Rothman <arothman@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J."),
                    family = "Rothman",
                    role = c("aut", "cre"),
                    email = "arothman@umn.edu")
as necessary.
Maintainer: ‘Gokmen Altay <altaylabs@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gokmen",
                    family = "Altay",
                    role = c("aut", "cre"),
                    email = "altaylabs@gmail.com")
as necessary.
checkRd: (-1) bind_tweets.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bind_tweets.Rd:22: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Daniel Amorese  <amorese@ipgp.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Amorese",
                    role = c("aut", "cre"),
                    email = "amorese@ipgp.fr")
as necessary.
Maintainer: ‘livio finos <livio.finos@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Livio",
                    family = "Finos",
                    role = c("aut", "cre"),
                    email = "livio.finos@unipd.it")
as necessary.
Maintainer: ‘Dane R. Van Domelen <vandomed@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dane", "R."),
                    family = "Van Domelen",
                    role = c("aut", "cre"),
                    email = "vandomed@gmail.com")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘accelerometry.Rd’:
    https://doi.org/10.7287/peerj.preprints.3188v1
Maintainer: ‘Jung Ae Lee <jungaeleeb@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jung", "Ae"),
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "julee@uark.edu")
as necessary.
checkRd: (-1) accelimp.Rd:15: Lost braces
    15 | \item[]{...}
       |        ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mice.impute.2l.zip.pmm.Rd: mice
  mice.impute.2l.zipln.Rd: mice
  mice.impute.2l.zipln.pmm.Rd: mice
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following files/directories:
  ‘acceldata2.RData’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
excursion 3.573  0.537   5.136
Maintainer: ‘Jaejoon Song <jjsong2@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jaejoon",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "jjsong2@mdanderson.org"),
               person(given = c("Matthew", "G."),
                      family = "Cox",
                      role = "aut"))
as necessary.
Maintainer: ‘Gudmundur Einarsson <gumeo140688@gmail.com>’

The Description field contains
  <arXiv:1705.07194>).  Functions for performing cross validation are
  the package (See Ames and Hong, <arXiv:1401.5492>). See the 'github'
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Markus Belfrage <markus.belfrage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Markus",
                    family = "Belfrage",
                    role = c("aut", "cre"),
                    email = "markus.belfrage@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  acdFit.Rd: solnp
  plotScatterAcd.Rd: stat_smooth
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Antony M. Overstall <A.M.Overstall@soton.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Antony", "M."),
                      family = "Overstall",
                      role = c("aut", "cre"),
                      email = "a.m.overstall@soton.ac.uk"),
               person(given = c("David", "C."),
                      family = "Woods",
                      role = "aut"),
               person(given = c("Maria", "Adamou", "&", "Damianos"),
                      family = "Michaelides",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) overstallwoods.Rd:184-185: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) overstallwoods.Rd:186-187: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) overstallwoods.Rd:188-189: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) overstallwoods.Rd:190-191: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acep_load_base.Rd’ ‘acep_rst.Rd’ ‘acep_token_plot.R’
    ‘acep_token_table.R’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
acep_clean 0.13   0.02   5.986
Maintainer: ‘Vladimir Polony <podalv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vladimir",
                    family = "Polony",
                    role = c("aut", "cre"),
                    email = "podalv@gmail.com")
as necessary.
Maintainer: ‘Liang He <hyx520101@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Liang",
                    family = "He",
                    role = c("aut", "cre"),
                    email = "hyx520101@gmail.com")
as necessary.
Maintainer: ‘Higor Cotta <cotta.higor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Higor",
                      family = "Cotta",
                      role = c("aut", "cre"),
                      email = "cotta.higor@gmail.com"),
               person(given = "Valderio",
                      family = "Reisen",
                      role = "aut"),
               person(given = "Pascal",
                      family = "Bondon",
                      role = "aut"),
               person(given = "Céline",
                      family = "Lévy-Leduc",
                      role = "aut"))
as necessary.
Maintainer: ‘Alexander Sohn <asohn@uni-goettingen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexander",
                    family = "Sohn",
                    role = c("aut", "cre"),
                    email = "asohn@uni-goettingen.de")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  doACNE.Rd: AffymetrixCelSet, Verbose
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Morgane Pierre-Jean <morgane.pierrejean@genopole.cnrs.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tomas Bacigal <bacigal@math.sk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tomas",
                    family = "Bacigal",
                    role = c("aut", "cre"),
                    email = "bacigal@math.sk")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acoRn.R’ ‘clean_input.R’ ‘create_mock_dataset.R’
    ‘exclude_duplicates.R’ ‘find_parents.R’ ‘identify_duplicates.R’
Maintainer: ‘Siakoulis Vasilios <Siakoulis.Vasilios@atticabank.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Siakoulis",
                      family = "Vasileios",
                      role = "aut"),
               person(given = "Siakoulis",
                      family = "Vasilios",
                      role = "cre",
                      email = "Siakoulis.Vasilios@atticabank.gr"))
as necessary.
Maintainer: ‘Sam Buttrey <buttrey@nps.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dave",
                      family = "Ruth",
                      role = "aut"),
               person(given = "Sam",
                      family = "Buttrey",
                      role = c("aut", "cre"),
                      email = "buttrey@nps.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rRegMatch.Rd: daisy, treeClust.dist
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
No examples, no tests, no vignettes
Maintainer: ‘Henrik Singmann <singmann+acss@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
acss 5.912  0.339   7.347
Maintainer: ‘Prabhanjan Tattar <prabhanjannt@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Prabhanjan",
                    family = "Tattar",
                    role = c("aut", "cre"),
                    email = "prabhanjannt@gmail.com")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘Disease.Rd’:
    \keyword{residual analysis, logistic regression}
  File ‘bs.Rd’:
    \keyword{score function, binomial distribution}
  File ‘chest.Rd’:
    \keyword{rootogram, militiamen}
  File ‘cloud.Rd’:
    \keyword{stem-and-leaf plot, cloud seeding experim [TRUNCATED]
  File ‘cork.Rd’:
    \keyword{multivariate dataset, singular value deco [TRUNCATED]
  File ‘cs.Rd’:
    \keyword{Cauchy random samples, score function}
  File ‘depression.Rd’:
    \keyword{Wilcoxon test, Hamilton depression scale} [TRUNCATED]
  File ‘flight.Rd’:
    \keyword{transformation, variance reduction}
  File ‘lowbwt.Rd’:
    \keyword{logistic regression, model selection}
  File ‘memory.Rd’:
    \keyword{fivenum, IQR}
checkRd: (-1) Ehrenfest.Rd:19: Lost braces
    19 | In this experiment there are i balls in Urn I, and remaining 2n-i balls in Urn II. Then at any instance, the probability of selecting a ball from Urn I and placing it in Urn II is i/2n, and the other way of placing a ball from Urn II to Urn I is (2n-i)/2n. At each instant we let the number i of balls in the Urn I to be the state of the system. Thus, the state space is S = { 0, 1, 2, \ldots, 2n }. Then we can pass from state i only to either of the states i-1 or i+1.
       |                                                                                                                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) Ehrenfest.Rd:20: Lost braces
    20 | Here, S = {0, 1, \ldots, 2n}. 
       |           ^
Maintainer: ‘Wenchao Ma <wenchao.ma@ua.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chia-Yi",
                      family = "Chiu",
                      role = "aut",
                      comment = "University of Minnesota"),
               person(given = "Wenchao",
                      family = "Ma",
                      role = c("aut", "cre"),
                      email = "wenchao.ma@ua.edu",
                      comment = "The University of Alabama"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
fragmentation_long 5.021  0.668   6.823
Maintainer: ‘Jairo Hidalgo Migueles <jairo.hidalgo.migueles@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jairo", "Hidalgo"),
                    family = "Migueles",
                    role = c("aut", "cre"),
                    email = "jairo.hidalgo.migueles@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_accumulation_metrics.R’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
plot_data 3.716  0.059    5.07
Maintainer: ‘Nathan Wycoff <nathan.wycoff@georgetown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nathan",
                      family = "Wycoff",
                      role = c("aut", "cre"),
                      email = "nathan.wycoff@georgetown.edu"),
               person(given = "Mickael",
                      family = "Binois",
                      role = "aut"))
as necessary.
Maintainer: ‘Marcus Rowcliffe <marcus.rowcliffe@ioz.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcus",
                    family = "Rowcliffe",
                    role = c("aut", "cre"),
                    email = "marcus.rowcliffe@ioz.ac.uk")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
bin_data             12.574  0.376  17.598
plot_actogram         9.763  0.342  14.025
read_clock_lab_files  8.557  0.099  10.800
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  adjustIntercept.Rd: cpglm, cpglmm, data.table
  findbars.Rd: mkRespMod, mkReTrms, nlformula, subbars
  plotRE.Rd: ggplot2, ggplot
  weights-actuaRE.Rd: cpglm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘actuar/libs/actuar.so’:
  Found non-API call to R: ‘OBJECT’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Eleanor Caves <eleanor.caves@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eleanor",
                      family = "Caves",
                      role = c("aut", "cre"),
                      email = "eleanor.caves@gmail.com"),
               person(given = "Sönke",
                      family = "Johnsen",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘Example.jpeg’
Maintainer: ‘Esteban Alfaro <Esteban.Alfaro@uclm.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Alfaro",
                      role = "aut"),
               person(given = "Esteban;",
                      family = "Gamez",
                      role = "aut"),
               person(family = "Matias",
                      role = "aut"),
               person(family = "Garcia",
                      role = "aut"),
               person(given = c("Noelia;", "with", "contributions", "from", "L."),
                      family = "Guo",
                      role = "aut"),
               person(given = "A.",
                      family = "Albano",
                      role = "aut"),
               person(given = "M.",
                      family = "Sciandra",
                      role = "aut"),
               person(given = "A.",
                      family = "Plaia",
                      role = "aut"),
               person(given = "Esteban",
                      family = "Alfaro",
                      role = "cre",
                      email = "Esteban.Alfaro@uclm.es"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  autoprune.rd: rpart
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) est_S_Plus_Plus_MethodA.Rd:31: Lost braces; missing escapes or markup?
    31 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method A}
       |                                                          ^
checkRd: (-1) est_S_Plus_Plus_MethodB.Rd:31: Lost braces; missing escapes or markup?
    31 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method B}
       |                                                          ^
checkRd: (-1) est_S_Star_Plus_MethodA.Rd:29: Lost braces; missing escapes or markup?
    29 |   \item{trt_diff}{Estimate of treatment difference for S_{++} using Method A}
       |                                                          ^
checkRd: (-1) est_S_Star_Plus_MethodB.Rd:29: Lost braces; missing escapes or markup?
    29 |   \item{trt_diff}{Estimate of treatment difference for S_{*+} using Method B}
       |                                                          ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Erkut Tekeli <etekeli@atu.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zeynel",
                      family = "Cebeci",
                      role = c("aut", "cre")),
               person(given = "Erkut",
                      family = "Tekeli",
                      role = c("aut", "cre"),
                      email = "etekeli@atu.edu.tr"),
               person(given = "Cagatay",
                      family = "Cebeci",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) adana.Rd:25: Lost braces; missing escapes or markup?
    25 |   \item{gatype}{Type of GA. \itemize{\item{"gga": generational GA}  \item{"ssga": steady state GA} } {Default value is "gga"}}
       |                                                                                                      ^
checkRd: (-1) adana.Rd:26: Lost braces; missing escapes or markup?
    26 |   \item{objective}{Type of optimization. \itemize{\item{"min": minimization}  \item{"max": maximization} } {Default value is "max"}}
       |                                                                                                            ^
checkRd: (-1) adana.Rd:34: Lost braces; missing escapes or markup?
    34 |                  {Default value is "initbin"}}
       |                  ^
checkRd: (-1) adana.Rd:56: Lost braces; missing escapes or markup?
    56 |                \itemize{\item{"integer"}  \item{"real"} } {Default value is "real"}}
       |                                                           ^
checkRd: (-1) adana.Rd:185: Lost braces; missing escapes or markup?
   185 |     {Default value is "w"}
       |     ^
Maintainer: ‘Dong Zhang <dzhang0716@126.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dzhang0716@126.com")
as necessary.

Found the following (possibly) invalid file URIs:
  URI: dzhang0716@126.com
    From: man/rARS.Rd
  URI: dzhang0716@126.com
    From: man/rASS.Rd
  URI: dzhang0716@126.com
    From: man/rCCARS.Rd
  URI: dzhang0716@126.com
    From: man/rMARS.Rd
Maintainer: ‘Julia Fukuyama <julia.fukuyama@gmail.com>’

The Description field contains
  <arXiv:1702.00501>. The package also includes functionality for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andreas Scheidegger <andreas.scheidegger@eawag.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andreas",
                      family = "Scheidegger",
                      role = c("aut", "cre"),
                      email = "andreas.scheidegger@eawag.ch"),
               person(role = "aut",
                      email = "andreas.scheidegger@eawag.ch"),
               person(role = "aut",
                      email = "scheidegger.a@gmail.com"))
as necessary.
Maintainer: ‘Lihua Lei <lihua.lei@berkeley.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  (2016) <arXiv:1609.06035>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) adapt.Rd:46: Lost braces
    46 | \item{qvals}{a vector of values in [0, 1]U{Inf}. Q-values. See Details}
       |                                           ^
checkRd: (-1) corr_lfdr.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) corr_lfdr.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ctgm_lfdr.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ctgm_lfdr.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot_2d.Rd:40: Lost braces; missing escapes or markup?
    40 | \code{plot_2d_lfdr} gives the contour plot of local FDR estimates when all p-values are equal to \code{targetp}. It is recommended to run \code{plot_2d_lfdr} for multiple \code{targetp}'s ranging from {0.001, 0.005, 0.01, 0.05}.
       |                                                                                                                                                                                                          ^
Maintainer: ‘Samuel A Danziger <sam.danziger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "A"),
                    family = "Danziger",
                    role = c("aut", "cre"),
                    email = "sam.danziger@gmail.com")
as necessary.
checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^
Maintainer: ‘Mark Culp <mvculp@mail.wvu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mark",
                      family = "Culp",
                      role = c("aut", "cre"),
                      email = "mvculp@mail.wvu.edu"),
               person(given = "Kjell",
                      family = "Johnson",
                      role = "aut"),
               person(given = "George",
                      family = "Michailidis",
                      role = "aut"))
as necessary.
checkRd: (-1) ada.Rd:171: Escaped LaTeX specials: \&
Maintainer: ‘Pengyi Yang <yangpy7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pengyi",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yangpy7@gmail.com")
as necessary.
Maintainer: ‘Fabio Centofanti <fabio.centofanti@unina.it>’

The BugReports field in DESCRIPTION has
  https://github.com/unina-sfere/adass
which should likely be
  https://github.com/unina-sfere/adass/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AdbiConnection-class.Rd: DBIConnection-class, DBIDriver-class
  AdbiDriver-class.Rd: dbConnect, DBIDriver-class, DBIConnection-class
  AdbiResult-class.Rd: DBIResult-class, DBIObject-class,
    DBIDriver-class, DBIConnection-class
  AdbiResultArrow-class.Rd: DBIResultArrow-class, DBIResult-class,
    DBIObject-class, DBIDriver-class, DBIConnection-class
  dbConnect.Rd: DBIDriver-class, DBIConnection-class, dbConnect,
    dbDisconnect
  dbFetch.Rd: dbFetch, DBIResult-class
  dbSendQuery.Rd: dbSendQuery, dbGetQuery, DBIConnection-class, dbBind,
    DBIResult-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Yalin Zhu <yalin.zhu@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yalin",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "yalin.zhu@outlook.com")
as necessary.
Maintainer: ‘Petr Simecek <simecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marie",
                      family = "Simeckova",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Rusch",
                      role = "aut"),
               person(given = "Petr",
                      family = "Simecek",
                      role = "cre",
                      email = "simecek@gmail.com"))
as necessary.
Maintainer: ‘Mark W. Donoghoe <markdonoghoe@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yili Hong <yilihong@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yili",
                      family = "Hong",
                      role = c("aut", "cre"),
                      email = "yilihong@vt.edu"),
               person(given = "Yimeng",
                      family = "Xie",
                      role = "aut"),
               person(given = "Zhongnan",
                      family = "Jin",
                      role = "aut"),
               person(given = "Caleb",
                      family = "King",
                      role = "aut"))
as necessary.
Maintainer: ‘Marta Karas <marta.karass@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
segmentWalking 4.388  0.254   5.676
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
pso 8.978      0  11.941
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘IntervalEstimator-class.Rd’ ‘PValue-class.Rd’
    ‘PointEstimator-class.Rd’ ‘analyze.R’ ‘estimators.R’
    ‘evaluate_estimator.R’ ‘fisher_information.R’
    ‘integrate_over_sample_space.R’ ‘mle_distribution.R’ ‘n2c2_helpers.R’
    ‘plot.R’ ‘print.R’ ‘reference_implementation.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘blocks.R’ ‘compress.R’ ‘connect_adf.R’ ‘demo.R’ ‘device_create.R’
    ‘entry_info.R’ ‘helpers.R’ ‘move.R’ ‘move.Rd’ ‘s3_conn.R’
    ‘s3_methods.R’ ‘virtual_path.R’
Maintainer: ‘Carlos J. Gil Bellosta <cgb@datanalytics.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Carlos", "J.", "Gil"),
                    family = "Bellosta",
                    role = c("aut", "cre"),
                    email = "cgb@datanalytics.com")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Dan Dediu <ddediu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) med.groups.Rd:20: Lost braces; missing escapes or markup?
    20 | medication groups using the construction \emph{"{NAME}"}.
       |                                                 ^
checkRd: (-1) med.groups.Rd:26: Lost braces; missing escapes or markup?
    26 | Another example is "NotVita" defined as "(!{Vitamines})", which selects all
       |                                            ^
Maintainer: ‘Dan Dediu <ddediu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sandrine Pavoine <sandrine.pavoine@mnhn.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sandrine",
                    family = "Pavoine",
                    role = c("aut", "cre"),
                    email = "sandrine.pavoine@mnhn.fr")
as necessary.
Maintainer: ‘E. F. Haghish <haghish@uio.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("E.", "F."),
                    family = "Haghish",
                    role = c("aut", "cre"),
                    email = "haghish@uio.no")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
boot.adjroc 5.801  0.046   6.935
boot.roc    4.336  0.063   5.622
'::' or ':::' import not declared from: ‘devtools’
'library' or 'require' calls not declared from:
  ‘ggmap’ ‘gridExtra’ ‘magick’
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
derive_param_confirmed_bor  4.452  0.033   5.248
derive_param_confirmed_resp 4.353  0.046   5.263
Examples with CPU (user + system) or elapsed time > 5s
                              user system elapsed
derive_var_joined_exist_flag 5.127  0.008   5.881
Maintainer: ‘David Ardia <david.ardia.ch@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Polina Bombina <pbombina@crimson.ua.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Brendan",
                      family = "Ames",
                      role = "aut",
                      email = "bpames@ua.edu"),
               person(given = "Polina",
                      family = "Bombina",
                      role = c("aut", "cre"),
                      email = "pbombina@crimson.ua.edu"))
as necessary.

The Description field contains
  sampled binary matrix, Bombina et al. (2019) <arXiv:1904.03272>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Adrian Timpson <a.timpson@ucl.ac.uk>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Cole Monnahan <monnahc@uw.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cm_formula.R’ ‘tag_add.R’
Maintainer: ‘Yifan (Ethan) Xu <ethan.yifanxu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  http://smm.sagepub.com/content/early/2015/10/15/0962280215609948.abstract.
Please enclose URLs in angle brackets (<...>).
Maintainer: ‘Pankaj Bhatlawande <pbhatlawande@merkleinc.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pankaj",
                    family = "Bhatlawande",
                    role = c("aut", "cre"),
                    email = "pbhatlawande@merkleinc.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  kdfun.Rd: divc
  krfun.Rd: divc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jader Lugon Junior <jlugonjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jader", "Lugon"),
                      family = "Junior",
                      role = c("aut", "cre"),
                      email = "jlugonjr@gmail.com"),
               person(given = c("Pedro", "Paulo", "Gomes", "Watts"),
                      family = "Rodrigues",
                      role = "aut"),
               person(given = "Luiz",
                      family = "Bevilacqua",
                      role = "aut"),
               person(given = c("Gisele", "Moraes"),
                      family = "Marinho",
                      role = "aut"),
               person(given = c("Diego", "Campos"),
                      family = "Knupp",
                      role = "aut"),
               person(given = c("Joao", "Flavio", "Vieira"),
                      family = "Vasconcellos",
                      role = "aut"),
               person(given = c("Antonio", "Jose", "da", "Silva"),
                      family = "Neto.",
                      role = "aut"))
as necessary.
Maintainer: ‘Murray Cox <murray.p.cox@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean",
                      family = "Sanderson",
                      role = "aut"),
               person(given = "Murray",
                      family = "Cox",
                      role = "cre",
                      email = "murray.p.cox@gmail.com"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘admix.Rd’:
    https://doi.org/10.1534/genetics.115.176842
    https://doi.org/10.1101/gr.083634.108
  File ‘plotsignal.Rd’:
    https://doi.org/10.1534/genetics.115.176842
  File ‘signal.Rd’:
    https://doi.org/10.1534/genetics.115.176842
  File ‘wavesum.Rd’:
    https://doi.org/10.1534/genetics.115.176842
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
get_series 1.092  0.189   6.296
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
autoplot          7.160  0.196   9.443
plot              5.775  0.035   7.771
predict.tsd_onset 5.033  0.016   5.893
Maintainer: ‘Michael Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  <arXiv:2007.02266>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) count_cases.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_cases.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) enrich.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitaep.Rd:14: Lost braces
    14 | \item A sequence of goodness-of-fit measures consist of Akaike Information Criterion (\code{AIC}), Consistent Akaike Information Criterion (\code{CAIC}), Bayesian Information Criterion (\code{BIC}), Hannan-Quinn information criterion (\code{HQIC}), Anderson-Darling (\code{AD}), Cram\'{e}er-von Misses (\code{CVM}), Kolmogorov-Smirnov (\code{KS}), and log-likelihood (\code{log-likelihood}) statistics.
       |                                                                                                                                                                                                                                                                                              ^
Maintainer: ‘"Jose Oteros" <OterosJose@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesus",
                      family = "Rojo",
                      role = "aut",
                      email = "Jesus.Rojo@uclm.es"),
               person(given = "Antonio",
                      family = "Picornell",
                      role = "aut",
                      email = "picornell@uma.es"),
               person(given = "Jose",
                      family = "Oteros",
                      role = "aut",
                      email = "OterosJose@gmail.com"),
               person(given = "\"Jose",
                      family = "Oteros\"",
                      role = "cre",
                      email = "OterosJose@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following files/directories:
  ‘table_AeRobiology’
Maintainer: ‘Mark Hogue <mark.hogue.chp@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Hogue",
                    role = c("aut", "cre"),
                    email = "mark.hogue.chp@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘report_basic.R’ ‘report_cum_plots.R’ ‘report_log_mass.R’
    ‘report_plots.R’ ‘set_params_2.R’
Running ‘Ch-Basics.R’ [2s/2s]
  Comparing ‘Ch-Basics.Rout’ to ‘Ch-Basics.Rout.save’ ... OK
  Running ‘Ch-Intro.R’ [2s/2s]
  Comparing ‘Ch-Intro.Rout’ to ‘Ch-Intro.Rout.save’ ... OK
  Running ‘Ch-LinearRegression.R’ [4s/5s]
  Comparing ‘Ch-LinearRegression.Rout’ to ‘Ch-LinearRegression.Rout.save’ ...46,51c46,51
<  Min.   :   2   Min.   :  20   Min.   : 0.00522  
<  1st Qu.:  52   1st Qu.: 134   1st Qu.: 0.46449  
<  Median : 122   Median : 282   Median : 1.32051  
<  Mean   : 197   Mean   : 418   Mean   : 2.54846  
<  3rd Qu.: 268   3rd Qu.: 541   3rd Qu.: 3.44017  
<  Max.   :1098   Max.   :2120   Max.   :24.45946  
---
>  Min.   :   2   Min.   :  20   Min.   : 0.005  
>  1st Qu.:  52   1st Qu.: 134   1st Qu.: 0.464  
>  Median : 122   Median : 282   Median : 1.321  
>  Mean   : 197   Mean   : 418   Mean   : 2.548  
>  3rd Qu.: 268   3rd Qu.: 541   3rd Qu.: 3.440  
>  Max.   :1098   Max.   :2120   Max.   :24.459  
886c886
< -0.619068 -0.025568  0.000000 -0.000134  0.033201  0.641027 
---
> -0.6191 -0.0256  0.0000 -0.0001  0.0332  0.6410 
  Running ‘Ch-Microeconometrics.R’ [3s/4s]
  Comparing ‘Ch-Microeconometrics.Rout’ to ‘Ch-Microeconometrics.Rout.save’ ... OK
  Running ‘Ch-Programming.R’ [18s/23s]
  Comparing ‘Ch-Programming.Rout’ to ‘Ch-Programming.Rout.save’ ... OK
  Running ‘Ch-TimeSeries.R’ [3s/4s]
  Comparing ‘Ch-TimeSeries.Rout’ to ‘Ch-TimeSeries.Rout.save’ ... OK
  Running ‘Ch-Validation.R’ [62s/74s]
  Comparing ‘Ch-Validation.Rout’ to ‘Ch-Validation.Rout.save’ ... OK
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘colour_table.R’ ‘save_govuk.Rd’
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Hsiao-Ting Huang <nikkihuang309700034@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hsiao-Ting",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "lchen723@nccu.edu.tw")
as necessary.
checkRd: (-1) estimate.affinity.matrix.Rd:31: Lost braces; missing escapes or markup?
    31 | than \code{Y}, then those variables that appear in \code{X} but no in {Y}
       |                                                                       ^
checkRd: (-1) estimate.affinity.matrix.lowrank.Rd:36: Lost braces; missing escapes or markup?
    36 | \code{Y}, then those variables that appear in \code{X} but no in {Y} should
       |                                                                  ^
checkRd: (-1) show.correlations.Rd:47: Lost braces
    47 | code{ndims} dimensions. Defaults to all dimensions unless the latter are
       |     ^
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
domath 5.563  0.161   7.106
Maintainer: ‘Elisabeth Dahlqwist <elisabeth.dahlqwist88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elisabeth",
                    family = "Dahlqwist",
                    role = c("aut", "cre"),
                    email = "elisabeth.dahlqwist88@gmail.com")
as necessary.
checkRd: (-1) getNetworkGridLayout.Rd:6-11: Lost braces
     6 | getCoordinatesFromVertexId2<-function(AFMImage, vId) {
       |                                                      ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AFM.Rd: gstat, fractaldim, rgl
  AFMFractalDimensionAnalyser-getFractalDimensions.Rd: fractaldim
  AFMImageFractalDimensionMethod-class.Rd: fractaldim
  AFMImageNetworksAnalysis-class.Rd: igraph
  AFMImageVariogramAnalysis-evaluateVariogramModels-method.Rd: gstat
  displayHolesIn3D.Rd: rgl
  displayIn3D.Rd: rgl
  exportToSTL.Rd: rgl
  getCircleSpatialPoints.Rd: SpatialPoints
  putImagesFromAnalysisOnDisk.Rd: rgl
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Rafael Benitez <rabesua@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rafael",
                      family = "Benitez",
                      role = c("aut", "cre"),
                      email = "rabesua@uv.es"),
               person(given = c("Vicente", "Jose"),
                      family = "Bolos",
                      role = "aut"),
               person(given = "Jose-Luis",
                      family = "Toca-Herrera",
                      role = "aut"))
as necessary.
Maintainer: ‘Elisabeth Dahlqwist <elisabeth.dahlqwist88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elisabeth",
                      family = "Dahlqwist",
                      role = c("aut", "cre"),
                      email = "elisabeth.dahlqwist88@gmail.com"),
               person(given = "Arvid",
                      family = "Sjolander",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
AFcoxph 5.837  0.099   3.616
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘am_data.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘generate_workbook.Rd’
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
wbyscrku 7.562  0.003   9.583
rglwbysu 6.929  0.059   8.961
wbyAgmv  4.811  0.081   6.195
Maintainer: ‘Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>’

The Description field contains
  Maillard, Sylvain Arlot, Matthieu Lerasle (2021) <arXiv:1909.04890>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Matthias Bogaert <matthias.bogaert@ugent.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthias",
                      family = "Bogaert",
                      role = c("aut", "cre"),
                      email = "matthias.bogaert@ugent.be"),
               person(given = "Michel",
                      family = "Ballings",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Maintainer: ‘Lynn Yi <lynnyi@caltech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lynn",
                      family = "Yi",
                      role = c("aut", "cre"),
                      email = "lynnyi@caltech.edu"),
               person(given = "Lior",
                      family = "Pachter",
                      role = "aut"))
as necessary.
Maintainer: ‘Alex Stringer <alex.stringer@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alex",
                    family = "Stringer",
                    role = c("aut", "cre"),
                    email = "alex.stringer@uwaterloo.ca")
as necessary.

The Description field contains
  Package" <arXiv:2101.04468>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Kenji Kondo <kkondo.odnokk@gmail.com>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AccurateGLM-class.Rd: cv.glmnet
  coef.AccurateGLM.Rd: coef.glmnet
  predict.AccurateGLM.Rd: predict.glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Dai Feng <daifeng.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dai",
                    family = "Feng",
                    role = c("aut", "cre"),
                    email = "daifeng.stat@gmail.com")
as necessary.
Maintainer: ‘Felipe de Mendiburu <fmendiburu@lamolina.edu.pe>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Felipe",
                    family = "de Mendiburu",
                    role = c("aut", "cre"),
                    email = "fmendiburu@lamolina.edu.pe")
as necessary.
Maintainer: ‘Chun-Han Lee <d10621201@ntu.edu.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Chun-Han", "Lee"),
                      family = "<lyliu@ntu.edu.tw>",
                      role = "aut",
                      email = "lyliu@ntu.edu.tw"),
               person(given = "Chun-Han",
                      family = "Lee",
                      role = "cre",
                      email = "d10621201@ntu.edu.tw"))
as necessary.
Maintainer: ‘Rodney Edmondson <rodney.edmondson@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘agriTutorial.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example1.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example2.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example3.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example4.Rd’:
    http://dx.doi.org/10.1111/jac.12267
  File ‘example5.Rd’:
    http://dx.doi.org/10.1111/jac.12267
Maintainer: ‘Didier Ruedin <didier.ruedin@unine.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Didier",
                    family = "Ruedin",
                    role = c("ctb", "aut", "cre"),
                    email = "didier.ruedin@unine.ch")
as necessary.
Maintainer: ‘Anna Cheshkova <cheshanf@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anna",
                    family = "Cheshkova",
                    role = c("aut", "cre"),
                    email = "cheshanf@gmail.com")
as necessary.
Maintainer: ‘Berent Ånund Strømnes Lunde <lundeberent@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Berent", "Ånund", "Strømnes"),
                    family = "Lunde",
                    role = c("aut", "cre"),
                    email = "lundeberent@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
'::' or ':::' import not declared from: ‘xgboost’
'library' or 'require' calls not declared from:
  ‘ISLR’ ‘dplyr’ ‘ggplot2’ ‘glmnet’ ‘gridExtra’ ‘lightgbm’
  ‘randomForest’ ‘xgboost’
Maintainer: ‘Anders Gorst-Rasmussen <agorstras@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
color_ramps 6.035  0.197   7.576
Maintainer: ‘Chengyuan Lu <c.lu@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chengyuan",
                    family = "Lu",
                    role = c("aut", "cre"),
                    email = "c.lu@lumc.nl")
as necessary.

The Description field contains
  Lu(2021) <arXiv:2004.06156>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
fit 4.547  0.259   5.571
Maintainer: ‘Amarnath Bose <amarnath.bose@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Amarnath",
                    family = "Bose",
                    role = c("aut", "cre"),
                    email = "amarnath.bose@gmail.com",
                    comment = c(ORCID = "0000-0003-1560-6745"))
as necessary.
Maintainer: ‘Abdisalam Hassan Muse <abdisalam.h.muse@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Authors@R.",
                      family = "c)",
                      role = "aut",
                      comment = "\"aut\", \"ctb\",\"cre\""),
               person(family = "person)",
                      role = "aut",
                      comment = "\"ctb\""),
               person(family = "person)",
                      role = "aut",
                      comment = "\"ctb\""),
               person(given = "person)",
                      family = ")",
                      role = "aut",
                      comment = "\"ctb\""),
               person(given = c("Abdisalam", "Hassan"),
                      family = "Muse",
                      role = "cre",
                      email = "abdisalam.h.muse@gmail.com"))
as necessary.
checkRd: (-1) AEHMLE.Rd:42-45: Lost braces
    42 | \item{basehaz}{: {baseline hazard structure including baseline
       |                  ^
checkRd: (-1) AHMLE.Rd:41-43: Lost braces
    41 | \item{basehaz}{: {baseline hazard structure including baseline
       |                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  addNoiseAtEventTimes.Rd: data.table
  makeContWeights.Rd: data.table
  weightPredict.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
makeContWeights 19.351   0.37  12.703
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘akaike_adjusted_rsq.R’ ‘filter_vif.R’ ‘fit_models.R’
    ‘select_models.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AICc_permanova2.Rd: adonis2
  fit_models.Rd: vegdist, adonis2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Greg Gloor <ggloor@uwo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Gloor",
                    role = c("aut", "cre"),
                    email = "ggloor@uwo.ca")
as necessary.
Maintainer: ‘Andreas Pfeiffer <apfeiffer1@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Pfeiffer",
                    role = c("aut", "cre"),
                    email = "apfeiffer1@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ability_agreement.R’ ‘ability_ai.R’ ‘ability_compute_bounds.R’
    ‘ability_compute_stats.R’ ‘ability_human.R’
    ‘ability_human_override.R’ ‘ability_preference.R’
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
TestMonotonicityRE 3.851  0.107   5.419
checkRd: (-1) aimPlot.Rd:39: Lost braces; missing escapes or markup?
    39 |  \item \code{Variable} {1st column: The various aims to be completed}
       |                        ^
checkRd: (-1) aimPlot.Rd:40: Lost braces; missing escapes or markup?
    40 |  \item \code{Percentage} {2nd column: The percentage of completeness}
       |                          ^
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Joe Roe [aut] (<https://orcid.org/0000-0002-1011-1244>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Joe Roe [aut] (ORCID: <https://orcid.org/0000-0002-1011-1244>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.GRiwrm.R’
checkRd: (-1) get_airnow_area.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{parameters}{Parameter(s) to return data for. Choices are PM_{2.5}
       |                                                                   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gateway_keyring.R’ ‘gateway_openai.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘airship.R’
Maintainer: ‘Santos J. González-Rojí <santosjose.gonzalez@ehu.eus>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jon",
                      family = "Sáenz",
                      role = "aut"),
               person(given = c("Santos", "J."),
                      family = "González-Rojí",
                      role = c("aut", "cre"),
                      email = "santosjose.gonzalez@ehu.eus"),
               person(given = "Sheila",
                      family = "Carreno-Madinabeitia",
                      role = "aut"),
               person(given = "Gabriel",
                      family = "Ibarra-Berastegi",
                      role = "aut"))
as necessary.

File 'R/aiRthermo-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Found the following files/directories:
  ‘stuve.pdf’
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
SAM         5.521  0.411   7.203
show.sam    5.147  0.278   6.942
modeled_dqt 5.016  0.408   7.394
modeled_isf 4.981  0.339   7.143
aniso_SAM   4.186  0.201   5.468
Maintainer: ‘W. E. Wansouwé <ericwansouwe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("W.", "E."),
                      family = "Wansouwé",
                      role = c("aut", "cre"),
                      email = "ericwansouwe@gmail.com"),
               person(given = c("S.", "M."),
                      family = "Somé",
                      role = "aut"),
               person(given = c("C.", "C."),
                      family = "Kokonendji",
                      role = "aut"))
as necessary.

The URL field contains the following bad parts:
  www.r-project.org
The URL field should be a list of URLs separated by commas or
whitespace.
checkRd: (-1) plot.dke.fun.Rd:33: Lost braces; missing escapes or markup?
    33 |   \item{las}{ Numeric in {0,1,2,3}; the style of axis labels. 
       |                          ^
checkRd: (-1) interpp.Rd:119: Lost braces
   119 |   If \code{linear} is \\code{TRUE}, linear
       |                             ^
Maintainer: ‘Zichao Li <lizichao@live.unc.edu>’

The Description field contains
  and Li (2020) <arXiv:2009.04550>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ravi Varadhan <ravi.varadhan@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ravi",
                    family = "Varadhan",
                    role = c("aut", "cre"),
                    email = "ravi.varadhan@jhu.edu",
                    comment = "with contributions from Gabor Grothendieck")
as necessary.
checkRd: (-1) buildPhylipLineage.Rd:61: Lost braces; missing escapes or markup?
    61 |                                      names with the format {"Inferred1", "Inferred2", ...}.
       |                                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gridPlot.Rd: ggplot
  plotAbundanceCurve.Rd: ggplot
  plotDiversityCurve.Rd: ggplot
  plotDiversityTest.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘calc_plan_stats.R’
Maintainer: ‘Daewoo Pak <heavyrain.pak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenxi",
                      family = "Li",
                      role = "aut"),
               person(given = "Daewoo",
                      family = "Pak",
                      role = c("aut", "cre"),
                      email = "heavyrain.pak@gmail.com"),
               person(given = "David",
                      family = "Todem",
                      role = "aut"))
as necessary.
Maintainer: ‘Kamil Erguler <k.erguler@cyi.ac.cy>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kamil",
                    family = "Erguler",
                    role = c("aut", "cre"),
                    email = "k.erguler@cyi.ac.cy")
as necessary.
Maintainer: ‘Luis Benites Sanchez <lbenitesanchez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Benites"),
                      family = "Sanchez",
                      role = c("aut", "cre"),
                      email = "lbenitesanchez@gmail.com"),
               person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Maintainer: ‘Christian E. Galarza <cgalarza88@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = c("aut", "cre"),
                      email = "cgalarza88@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"))
as necessary.
Maintainer: ‘Dan Apley <apley@northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dan",
                    family = "Apley",
                    role = c("aut", "cre"),
                    email = "apley@northwestern.edu")
as necessary.

File 'R/ALEPlot-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘George Rosenberger <gr2578@cumc.columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "George",
                      family = "Rosenberger",
                      role = c("aut", "cre"),
                      email = "gr2578@cumc.columbia.edu"),
               person(given = "Hannes",
                      family = "Roest",
                      role = "aut"),
               person(given = "Christina",
                      family = "Ludwig",
                      role = "aut"),
               person(given = "Ruedi",
                      family = "Aebersold",
                      role = "aut"),
               person(given = "Lars",
                      family = "Malmstroem",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
checkRd: (-1) ALF.Rd:47: Escaped LaTeX specials: \&
checkRd: (-1) APEXMS.Rd:14: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) APEXMS.Rd:15: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘Roy Wetherall <rwetherall@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Roy",
                    family = "Wetherall",
                    role = c("aut", "cre"),
                    email = "rwetherall@gmail.com")
as necessary.
Maintainer: ‘Jan Wolfertz <Jan.wolfertz@uni-duesseldorf.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jan",
                    family = "Wolfertz",
                    role = c("aut", "cre"),
                    email = "jan.wolfertz@uni-duesseldorf.de")
as necessary.
checkRd: (-1) optimalfrequency.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) optimalfrequency.Rd:31: Escaped LaTeX specials: \$
Maintainer: ‘Robert Fulton <rfulton@algorithmia.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Sutton",
                      role = "aut"),
               person(given = "James",
                      family = "Athappilly",
                      role = "aut"),
               person(given = "Taylor",
                      family = "Raack",
                      role = "aut"),
               person(given = "Robert",
                      family = "Fulton",
                      role = "cre",
                      email = "rfulton@algorithmia.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘lambda_functions.R’ ‘likelihood-space.R’ ‘snc.R’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
Alignment 7.481  0.933  10.465
Maintainer: ‘Cedric Hagen <ch0934@princeton.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cedric",
                    family = "Hagen",
                    role = c("aut", "cre"),
                    email = "ch0934@princeton.edu")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Maintainer: ‘Nathan Medina-Rodriguez <nathan.medina@ulpgc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nathan",
                      family = "Medina-Rodriguez",
                      role = c("aut", "cre"),
                      email = "nathan.medina@ulpgc.es"),
               person(given = "Angelo",
                      family = "Santana",
                      role = "aut"))
as necessary.
Maintainer: ‘Todd Cross <todd.cross@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Paul",
                      family = "Galpern",
                      role = "aut",
                      email = "pgalpern@gmail.com"),
               person(given = "Todd",
                      family = "Cross",
                      role = "cre",
                      email = "todd.cross@gmail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  amCluster.Rd: dynamicTreeCut, cutreeHybrid
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Emily Weiser <emily.l.weiser@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emily", "L."),
                      family = "Weiser",
                      role = "aut"),
               person(given = "Emily",
                      family = "Weiser",
                      role = "cre",
                      email = "emily.l.weiser@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) allestimates.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) allestimates.Rd:28: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Dr. Sandip Garai <sandipnicksandy@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dr.", "Sandip"),
                    family = "Garai",
                    role = c("aut", "cre"),
                    email = "sandipnicksandy@gmail.com")
as necessary.
checkRd: (-1) compare_cohorts.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compare_cohorts.Rd:36: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ville-Petteri Makinen <vpmakine@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ville-Petteri",
                    family = "Makinen",
                    role = c("aut", "cre"),
                    email = "vpmakine@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘episodes.Rd’ ‘loadouts.Rd’ ‘seasons.Rd’ ‘survivalists.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cleanse.data.frame.Rd: tbl_df
  split_by.data.frame.Rd: tbl_df
  treatment_corr.Rd: tbl_df
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Amrei Stammann <amrei.stammann@rub.de>’

The Description field contains
  described in Stammann (2018) <arXiv:1707.01815> and is restricted to
  and Wanner (2020) <arXiv:2004.12655>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Edward Lee <email.edwardlee@gmail.com>’

The BugReports field in DESCRIPTION has
  http://github.com/edwardslee/alphabetr
which should likely be
  http://github.com/edwardslee/alphabetr/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘inference.R’ ‘transformers.R’ ‘variance.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  alphaci.Rd: future.apply
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Beatriz Pateiro-Lopez <beatriz.pateiro@usc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Beatriz",
                      family = "Pateiro-Lopez",
                      role = c("aut", "cre"),
                      email = "beatriz.pateiro@usc.es"),
               person(given = "Alberto",
                      family = "Rodriguez-Casal"),
               person(family = ".",
                      role = "aut"))
as necessary.
Maintainer: ‘Jesper Wulff <jwulff@econ.au.dk>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andre Rehage <rehage@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andre",
                      family = "Rehage",
                      role = c("aut", "cre"),
                      email = "rehage@statistik.tu-dortmund.de"),
               person(given = "Sonja",
                      family = "Kuhnt",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘alphaOutlier-package.Rd’:
    \keyword{package
      distribution
      robust}
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
aout.kernel 4.937  0.027   6.461
Maintainer: ‘Beatriz Pateiro-Lopez <beatriz.pateiro@usc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Lafarge",
                      role = "aut"),
               person(given = "Beatriz",
                      family = "Pateiro-Lopez",
                      role = c("aut", "cre"),
                      email = "beatriz.pateiro@usc.es"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.ashape3d.Rd: rgl, material3d
  surfaceNormals.Rd: material3d
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mahdi",
                      family = "Teimouri",
                      role = c("aut", "cre"),
                      email = "teimouri@aut.ac.ir"),
               person(given = "Adel",
                      family = "Mohammadpour",
                      role = "aut"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Sanford Weisberg <sandy@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sanford",
                    family = "Weisberg",
                    role = c("aut", "cre"),
                    email = "sandy@umn.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URI:
  URI: www.oecd.org
    From: man/UN11.Rd
checkRd: (-1) UN1.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) rateprof.Rd:64: Escaped LaTeX specials: \&
Maintainer: ‘Dariush Najarzadeh <D_Najarzadeh@sbu.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dariush",
                    family = "Najarzadeh",
                    role = c("aut", "cre"),
                    email = "d_najarzadeh@sbu.ac.ir")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Katharine Mullen <mullenkate@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Katharine", "M."),
                      family = "Mullen",
                      role = "aut"),
               person(given = "Katharine",
                      family = "Mullen",
                      role = "cre",
                      email = "mullenkate@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
metapb   6.507  0.009   8.048
meta.pen 5.114  0.001   6.277
checkRd: (-1) altopt.ic.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.ic.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) altopt.rc.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘calculate_covariates.R’
checkRd: (-1) convertCoord.Rd:32: Lost braces
    32 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
checkRd: (-1) convertCoord.individual.Rd:33: Lost braces
    33 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
checkRd: (-1) getCoord.Rd:39: Lost braces
    39 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
checkRd: (-1) getCoord.individual.Rd:39: Lost braces
    39 | here{https://lbs.amap.com/faq/account/key/72}}
       |     ^
checkRd: (-1) getLocation.Rd:60: Lost braces; missing escapes or markup?
    60 | {https://lbs.amap.com/faq/account/key/72}}
       | ^
checkRd: (-1) getLocation.individual.Rd:60: Lost braces
    60 | Please check here{https://lbs.amap.com/faq/account/key/72}}
       |                  ^
'::' or ':::' import not declared from: ‘bslib’
'library' or 'require' call not declared from: ‘shinyjs’
Specified C++11: please drop specification unless essential
Maintainer: ‘Nils Myszkowski <nmyszkowski@pace.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nils",
                    family = "Myszkowski",
                    role = c("aut", "cre"),
                    email = "nmyszkowski@pace.edu")
as necessary.
Maintainer: ‘Housen Chu <hchu@lbl.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Conversion of ‘README.md’ failed:
Error parsing YAML metadata at "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/amerika/README.md" (line 1, column 1):
YAML parse exception at line 3, column 0,
while scanning a simple key:
could not find expected ‘:’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘deltaFibonacciCompress.Rd’ ‘read.AmigaBitmapFont.Rd’
    ‘read.AmigaBitmapFontSet.Rd’ ‘write.AmigaBitmapFont.Rd’
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
rasterToIFF 6.466  0.078   8.718
IFFChunk    4.649  0.116   5.843
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
ammiBayes.conf.plot 6.522  0.568   7.827
Author field differs from that derived from Authors@R
  Author:    ‘B. C. Ajay [aut, cre] (<https://orcid.org/0000-0001-7222-8483>), J. Aravind [aut] (<https://orcid.org/0000-0002-4791-442X>), R. Abdul Fiyaz [aut] (<https://orcid.org/0000-0001-6261-7071>), ICAR [cph] (https://www.icar.org.in)’
  Authors@R: ‘B. C. Ajay [aut, cre] (ORCID: <https://orcid.org/0000-0001-7222-8483>), J. Aravind [aut] (ORCID: <https://orcid.org/0000-0002-4791-442X>), R. Abdul Fiyaz [aut] (ORCID: <https://orcid.org/0000-0001-6261-7071>), ICAR [cph] (url: https://www.icar.org.in)’
Maintainer: ‘Jon Katz <jonkatz4@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jon",
                      family = "Katz",
                      role = c("aut", "cre"),
                      email = "jonkatz4@gmail.com"),
               person(given = "Therese",
                      family = "Donovan",
                      role = "aut",
                      email = "tdonovan@uvm.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘simCovariate.Rd’:
    \keyword{datagen,}
Maintainer: ‘Felipe Tumenas Marques <tumenas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Monica",
                      family = "Serra",
                      role = "aut",
                      email = "monicaserra.bio04@gmail.com"),
               person(given = c("Felipe", "Tumenas"),
                      family = "Marques",
                      role = c("aut", "cre"),
                      email = "tumenas@gmail.com"))
as necessary.
checkRd: (-1) aMNLFA.prune.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) aMNLFA.prune.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Oliver Sieber <oliver.sieber@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Felix",
                      family = "Scholkmann",
                      role = "aut",
                      email = "felix.scholkmann@gmail.com"),
               person(given = "Oliver",
                      family = "Sieber",
                      role = "cre",
                      email = "oliver.sieber@gmail.com"))
as necessary.
checkRd: (-1) AmpliconDuo-package.Rd:37-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:40-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:43-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:47-49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:50-52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:53-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AmpliconDuo-package.Rd:56-58: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Adam Elder <shmelder@gmail.com>’

The Description field contains
  A testing framework described in Elder et al. (2022) <arXiv:2203.01897>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  amExample1.Rd: allelematch
  amExample2.Rd: allelematch
  amExample3.Rd: allelematch
  amExample4.Rd: allelematch
  amExample5.Rd: allelematch
  amregtest.Rd: allelematch
  artData.Rd: amDataset, allelematch
  artRun.Rd: allelematch
  artVersion.Rd: allelematch-package
  ggSample.Rd: allelematch
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
extract_covariates 3.904  0.209    5.36
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘AmyloGram-package.Rd’:
    https://doi.org/10.1038/s41598-017-13210-9
Maintainer: ‘Cedric Landerer <cedric.landerer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Authors@R",
                      role = "aut"),
               person(given = "Cedric",
                      family = "Landerer",
                      role = "cre",
                      email = "cedric.landerer@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Patrick Mair <mair@fas.harvard.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
plottr 3.44  0.086   5.099
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
DEGS_scANANSE 4.791  0.402   5.502
Maintainer: ‘Eoghan T O'Halloran <eoghan.ohalloran2@mail.dcu.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tiago", "R"),
                      family = "Magalhaes",
                      role = "aut"),
               person(given = c("Eoghan", "T"),
                      family = "O'Halloran",
                      role = c("aut", "cre"),
                      email = "eoghan.ohalloran2@mail.dcu.ie"))
as necessary.
checkRd: (-1) AncestryMapper2.0-package.Rd:33: Escaped LaTeX specials: \~
checkRd: (-1) AncestryMapper2.0-package.Rd:38: Escaped LaTeX specials: \~
Maintainer: ‘Simon Zimmermann <zimmersi@hu-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Zimmermann",
                    role = c("aut", "cre"),
                    email = "zimmersi@hu-berlin.de")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
anchor_prediction_gam 7.805  0.054   8.843
anchor_regression_gam 7.529  0.063   8.791
Maintainer: ‘Josh Pasek <josh@joshpasek.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Josh",
                    family = "Pasek",
                    role = c("aut", "cre"),
                    email = "josh@joshpasek.com")
as necessary.
Maintainer: ‘Michael D. Sumner <mdsumner@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Damien R. Farine <damien.farine@ieu.uzh.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Damien", "R."),
                      family = "Farine",
                      role = c("aut", "cre"),
                      email = "damien.farine@ieu.uzh.ch"),
               person(given = "Alfredo",
                      family = "Sanchez-Tojar",
                      role = "aut"))
as necessary.
Maintainer: ‘Samuel Ackerman <smackrmn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Samuel",
                    family = "Ackerman",
                    role = c("aut", "cre"),
                    email = "smackrmn@gmail.com")
as necessary.
checkRd: (-1) EKF_1d_interp_joint.Rd:55: Lost braces; missing escapes or markup?
    55 | Prior 1x1 covariance matrix for predicting x_t from x_{t-1}.
       |                                                       ^
checkRd: (-1) EKF_interp_joint.Rd:65: Lost braces; missing escapes or markup?
    65 | Prior 2x2 covariance matrix for predicting x_t from x_{t-1}.
       |                                                       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  make_segments.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Problems with news in ‘NEWS.md’:
No news entries found.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘app.R’
checkRd: (-1) animate.Rd:625-627: Lost braces
   625 | group = function(...) {
       |                       ^
Maintainer: ‘Yihui Xie <xie@yihui.name>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
'library' or 'require' calls not declared from:
  ‘Cairo’ ‘fImport’ ‘rgl’ ‘zoo’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘anim-animate.R’ ‘anim-prep-cat.R’ ‘anim-prep.R’ ‘funnel-web-data.R’
    ‘kangaroo-data.R’ ‘kangaroo-plot.R’ ‘proportional-shade.R’
    ‘wallaby-data.R’ ‘wallaby-plot.R’
Maintainer: ‘Bart Lammers <bart.f.lammers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bart",
                    family = "Lammers",
                    role = c("aut", "cre"),
                    email = "bart.f.lammers@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Author field differs from that derived from Authors@R
  Author:    ‘Philipp Angerer [ccp] (<https://orcid.org/0000-0002-0369-2888>, flying-sheep), Alex Wolf [ccp] (<https://orcid.org/0000-0002-8760-7838>, falexwolf), Isaac Virshup [ccp] (ivirshup), Sergei Rybakov [ccp] (Koncopd), Robrecht Cannoodt [aut, cre, cph] (<https://orcid.org/0000-0003-3641-729X>, rcannood)’
  Authors@R: ‘Philipp Angerer [ccp] (ORCID: <https://orcid.org/0000-0002-0369-2888>, github: flying-sheep), Alex Wolf [ccp] (ORCID: <https://orcid.org/0000-0002-8760-7838>, github: falexwolf), Isaac Virshup [ccp] (github: ivirshup), Sergei Rybakov [ccp] (github: Koncopd), Robrecht Cannoodt [aut, cre, cph] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood)’
checkRd: (-1) concat.Rd:35: Lost braces; missing escapes or markup?
    35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.}
       |                                                                                                                     ^
checkRd: (-1) concat.Rd:35: Lost braces
    35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.}
       |                                                                                                                               ^
checkRd: (-1) concat.Rd:35: Lost braces
    35 | \item{index_unique}{Whether to make the index unique by using the keys. If provided, this is the delimeter between "{orig_idx}{index_unique}{key}". When \code{NULL}, the original indices are kept.}
       |                                                                                                                                             ^
Maintainer: ‘Samuel R. Borstein <sam@borstein.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Samuel", "R."),
                      family = "Borstein",
                      role = c("aut", "cre"),
                      email = "sam@borstein.com"),
               person(given = "Brian",
                      family = "O'Meara",
                      role = "aut",
                      email = "bomeara@utk.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  annotate.Rd: htmlwidgets
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Fabrizio Maturo <f.maturo@unich.it>’

The BugReports field in DESCRIPTION has
  https://github.com/fabriziomaturo/AnnuityRIR
which should likely be
  https://github.com/fabriziomaturo/AnnuityRIR/issues
instead.
checkRd: (-1) PV_post_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_post_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:7: Escaped LaTeX specials: \_ \_
checkRd: (-1) PV_pre_triang_3.Rd:22: Escaped LaTeX specials: \_ \_
Maintainer: ‘Maciel C. Vidal <calebe@ime.usp.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Maciel", "C."),
                      family = "Vidal",
                      role = c("aut", "cre"),
                      email = "calebe@ime.usp.br"),
               person(given = "Andre",
                      family = "Fujita",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ANOFA-contrastFrequencies.R’ ‘ANOFA-emFrequencies.R’
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
anomaly-package 4.775  0.088   5.479
Maintainer: ‘Philip Pallmann <p.pallmann@lancaster.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philip",
                    family = "Pallmann",
                    role = c("aut", "cre"),
                    email = "p.pallmann@lancaster.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ANOPA-anopa.R’ ‘ANOPA-contrastProportions.R’ ‘ANOPA-convert.R’
    ‘ANOPA-random.R’
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Philip Agnew <philip.agnew@ird.fr>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘anovir-package.Rd’:
    https://doi.org/10.1101/530709
  File ‘data_blanford.Rd’:
    https://doi.org/10.1186/1475-2875-11-365
  File ‘data_lorenz.Rd’:
    https://doi.org/10.1101/530709
    https://doi.org/10.1111/j.1752-4571.2011.00199.x
    https://doi.org/10.5061/dryad.2s231
  File ‘data_parker.Rd’:
    https://doi.org/10.1111/evo.12418
    https://doi.org/10.5061/dryad.24gq7
Maintainer: ‘Javad Zahiri <zahiri@modares.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Babak",
                      family = "Khorsand",
                      role = "aut",
                      email = "khorsand@yahoo.com"),
               person(given = "Javad",
                      family = "Zahiri",
                      role = "cre",
                      email = "zahiri@modares.ac.ir"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
AntAngioCOOL 5.11  0.324   6.832
Maintainer: ‘Guillermo Vinue <Guillermo.Vinue@uv.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guillermo",
                      family = "Vinue",
                      role = c("aut", "cre"),
                      email = "guillermo.vinue@uv.es"),
               person(given = "Irene",
                      family = "Epifanio",
                      role = "aut"),
               person(given = "Amelia",
                      family = "Simo",
                      role = "aut"),
               person(given = c("M.", "Victoria"),
                      family = "Ibanez",
                      role = "aut"),
               person(given = "Juan",
                      family = "Domingo",
                      role = "aut"),
               person(given = "Guillermo",
                      family = "Ayala",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  HartiganShapes.Rd: procGPA
  LloydShapes.Rd: procGPA
  archetypesBoundary.Rd: stepArchetypes, archetypes
  archetypoids.Rd: archetypes, stepArchetypes
  shapes3dShapes.Rd: shapes3d
  stepArchetypesRawData.Rd: stepArchetypes, archetypes
  stepArchetypoids.Rd: stepArchetypes, archetypes
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Af_edge_RMSD.R’ ‘VDJ_3d_properties.R’
checkRd: (-1) PS-methods.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PS-methods.Rd:65-67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Sim-Functions.Rd:126: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:127-129: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:135: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:136-137: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:138-140: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Sim-Functions.Rd:141-143: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Bruno Bodin <bruno.bodin@yale-nus.edu.sg>’

The Description field contains
  by Argiento and De Iorio (2019) <arXiv:1904.09733> and offers a more
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
AM_find_gamma_Pois 4.585  0.165   5.555
Maintainer: ‘Lorenzo Meninato <lorenzomeninato@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lorenzo",
                    family = "Meninato",
                    role = c("aut", "cre"),
                    email = "lorenzomeninato@gmail.com")
as necessary.
Maintainer: ‘Renaud Lancelot <renaud.lancelot@cirad.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Matthieu",
                      family = "Lesnoff",
                      role = "aut",
                      email = "matthieu.lesnoff@cirad.fr"),
               person(given = "Renaud",
                      family = "Lancelot",
                      role = c("aut", "cre"),
                      email = "renaud.lancelot@cirad.fr"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jerry Ratcliffe <jhr@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jerry",
                    family = "Ratcliffe",
                    role = c("aut", "cre"),
                    email = "jhr@temple.edu")
as necessary.
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Diogo Silveira Mendonca <diogosmendonca@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Diogo", "Silveira"),
                    family = "Mendonca",
                    role = c("aut", "cre"),
                    email = "diogosmendonca@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
APOTCPlot 4.574  0.291   5.332
Maintainer: ‘Arden Miller <a.miller@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arden",
                      family = "Miller",
                      role = c("aut", "cre"),
                      email = "a.miller@auckland.ac.nz"),
               person(given = c("Abu", "Zar", "Md."),
                      family = "Shafiullah.",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
summary.apc  6.310  0.003   7.209
IERpenalties 4.806  0.012   5.678
plot.apc     4.481  0.000   5.338
apc          4.165  0.016   5.178
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
apci 4.346  0.366   6.208
Maintainer: ‘Ulrich Bodenhofer <ulrich@bodenhofer.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ulrich",
                      family = "Bodenhofer",
                      role = c("aut", "cre"),
                      email = "ulrich@bodenhofer.com"),
               person(given = "Johannes",
                      family = "Palme",
                      role = "ctb"),
               person(given = "Chrats",
                      family = "Melkonian",
                      role = "ctb"),
               person(given = "Andreas",
                      family = "Kothmeier",
                      role = "aut"),
               person(given = "Nikola",
                      family = "Kostic",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  apcluster-methods.Rd: dgTMatrix-class, Matrix-class
  conversions.Rd: dgTMatrix-class, sparseMatrix-class, Matrix-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Yushu Shi <shiyushu2006@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yushu",
                    family = "Shi",
                    role = c("aut", "cre"),
                    email = "shiyushu2006@gmail.com")
as necessary.
checkRd: (-1) apc.indiv.est.model.Rd:142: Lost braces
   142 | For model testing: \code{\link{apc.indiv.model.table}}, code{\link{apc.indiv.compare.direct}}, \code{\link{waldtest}}, \code{\link{linearHypothesis}}
       |                                                             ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  apc.indiv.compare.direct.Rd: plm
  apc.indiv.est.model.Rd: plm, svyglm, waldtest, linearHypothesis
  apc.indiv.model.table.Rd: plm, waldtest, linearHypothesis
  apc.plot.data.level.Rd: levelplot, lattice
  apc.plot.fit.residuals.Rd: levelplot, lattice
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Aurelien Chateigner <aurelien.chateigner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aurelien",
                    family = "Chateigner",
                    role = c("aut", "cre"),
                    email = "aurelien.chateigner@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  multidna2alignment.Rd: as.alignment
  multidna2genind.Rd: genind-class, DNAbin2genind
  multidna2multiphyDat.Rd: DNAbin2genind
  plot-multidna-method.Rd: image.DNAbin
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Shaun Wilkinson <shaunpwilkinson@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
possible bashism in configure.ac line 32 (should be 'b = a'):
  if test x"${RSysinfoName}" == x"Darwin"; then
  possible bashism in configure.ac line 43 (should be 'b = a'):
     if test x"${hasOpenMP}" == x""; then
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
accuracy_sifter  5.407  0.215   7.126
aphylo_estimates 4.364  0.113   6.055
auc              4.144  0.051   5.466
Maintainer: ‘Joshua P. French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joshua", "P."),
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.
checkRd: (-1) predict_adjust.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) predict_adjust.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) print.predict_adjust.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
APIS_2n 1.255  0.250  11.301
APIS_3n 0.763  0.082  10.359
Maintainer: ‘Hans Peter Wolf <pwolf@wiwi.uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Hans", "Peter"),
                    family = "Wolf",
                    role = c("aut", "cre"),
                    email = "pwolf@wiwi.uni-bielefeld.de")
as necessary.
checkRd: (-1) iconplot.Rd:172: Lost braces
   172 |     the height of the area containing the panels and a margin of size code{100 * 0.1} 
       |                                                                           ^
Maintainer: ‘Quinten Stokkink <q.a.stokkink@tudelft.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Quinten",
                    family = "Stokkink",
                    role = c("aut", "cre"),
                    email = "q.a.stokkink@tudelft.nl")
as necessary.
Found the following calls to attach():
File ‘apollo/R/apollo_attach.R’:
  attach(as.list(apollo_beta), warn.conflicts = FALSE)
  attach(database, warn.conflicts = FALSE)
  attach(draws, warn.conflicts = FALSE)
  attach(randcoeff, warn.conflicts = FALSE)
  attach(lcpars, warn.conflicts = FALSE)
See section ‘Good practice’ in ‘?attach’.
Maintainer: ‘Eisuke Inoue <eisuke.inoue@marianna-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eisuke",
                      family = "Inoue",
                      role = c("aut", "cre"),
                      email = "eisuke.inoue@marianna-u.ac.jp"),
               person(given = "Hajime",
                      family = "Uno",
                      role = "aut"))
as necessary.
Maintainer: ‘Max Kuhn <mxkuhn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Max",
                      family = "Kuhn",
                      role = c("aut", "cre"),
                      email = "mxkuhn@gmail.com"),
               person(given = "Kjell",
                      family = "Johnson",
                      role = "aut"))
as necessary.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robin", "K.", "S."),
                    family = "Hankin",
                    role = c("aut", "cre"),
                    email = "hankin.robin@gmail.com")
as necessary.
Maintainer: ‘Bikram Karmakar <bkarmakar@ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bikram",
                    family = "Karmakar",
                    role = c("aut", "cre"),
                    email = "bkarmakar@ufl.edu")
as necessary.
Maintainer: ‘Marco D. Visser <marco.d.visser@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marco", "D."),
                    family = "Visser",
                    role = c("aut", "cre"),
                    email = "marco.d.visser@gmail.com")
as necessary.
Maintainer: ‘Hengrui Cai <hengruicai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hengrui",
                      family = "Cai",
                      role = c("aut", "cre"),
                      email = "hengruicai@gmail.com"),
               person(given = "Yan",
                      family = "Yuan",
                      role = "aut",
                      email = "yyuan@ualberta.ca"),
               person(given = c("Qian", "Michelle"),
                      family = "Zhou",
                      role = "aut",
                      email = "qz70@msstate.edu"),
               person(given = "Bingying",
                      family = "Li",
                      role = "aut",
                      email = "dorisli1120@gmail.com"))
as necessary.
Found the following files/directories:
  ‘APBinary_PPV.csv’ ‘APBinary_TPF.csv’
  ‘APBinary_ap_summary(method=perturbation,B=1500).csv’
  ‘APBinary_auc_summary(method=perturbation,B=1500).csv’
  ‘APSurv_PPV.csv’ ‘APSurv_TPF.csv’
  ‘APSurv_ap_summary(method=bootstrap,B=500).csv’
  ‘APSurv_auc_summary(method=bootstrap,B=500).csv’
  ‘CompareAP_Binary_dap_summary(method=none).csv’
  ‘CompareAP_Survival_dap_summary(method=bootstrap,B=500).csv’
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
age_pyramid 4.604  0.072   5.925
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
isolate.signal 4.364  0.105   6.319
Maintainer: ‘John Lawson <lawsonjsl7net@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Lawson",
                    role = c("aut", "cre"),
                    email = "lawsonjsl7net@gmail.com")
as necessary.
Maintainer: ‘Karline Soetaert <Karline.Soetaert@nioz.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Andreas", "F."),
                      family = "Hofmann",
                      role = "aut"),
               person(given = "Karline",
                      family = "Soetaert",
                      role = c("aut", "cre"),
                      email = "karline.soetaert@nioz.nl"),
               person(given = c("Filip", "J.R."),
                      family = "Meysman",
                      role = "aut"),
               person(given = "Mathilde",
                      family = "Hagens",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rich Nielsen <rnielsen@mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rich",
                    family = "Nielsen",
                    role = c("aut", "cre"),
                    email = "rnielsen@mit.edu")
as necessary.
checkRd: (-1) getages.Rd:11: Lost braces; missing escapes or markup?
    11 | containing the amalgamated $^{40}$Ar$^*$/$^{39}$Ar$_K$-ratios and
       |                              ^
checkRd: (-1) getages.Rd:11: Lost braces; missing escapes or markup?
    11 | containing the amalgamated $^{40}$Ar$^*$/$^{39}$Ar$_K$-ratios and
       |                                            ^
Maintainer: ‘Fernanda L. Schumacher <fernandalschumacher@gmail.com>’

The Description field contains
  innovations. arXiv preprint <arXiv:2110.00224>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.InfDiag.Rd: ggplot
  plot.Rd: ggplot
  plot.residARpCRM.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ActivityEvents-class.Rd: TimeSeries-class
  ArchaeoPhases-package.Rd: TimeScale-class
  CumulativeEvents-class.Rd: TimeSeries-class
  activity.Rd: TimeScale-class
  as_events.Rd: TimeScale-class
  as_phases.Rd: TimeScale-class
  bury.Rd: TimeScale-class
  data.frame.Rd: TimeScale-class
  interval_credible.Rd: TimeScale-class
  interval_hdr.Rd: TimeScale-class
  occurrence.Rd: TimeScale-class
  plot_events.Rd: TimeScale-class
  plot_phases.Rd: TimeScale-class
  read_bcal.Rd: TimeScale-class
  read_chronomodel.Rd: TimeScale-class
  read_oxcal.Rd: TimeScale-class
  summary.Rd: TimeScale-class
  tempo.Rd: TimeScale-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘David L. Carlson <dcarlson@tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "L."),
                      family = "Carlson",
                      role = c("aut", "cre"),
                      email = "dcarlson@tamu.edu"),
               person(given = "Georg",
                      family = "Roth",
                      role = "ctb"))
as necessary.
Unknown package ‘cxhull’ in Rd xrefs
Maintainer: ‘Michael Korvink <mkorvink@protonmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Manuel J. A. Eugster <manuel@mjae.net>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  as.archetypes.Rd: parameters
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘mvtnorm’
Maintainer: ‘Benjamin M Delory <Benjamin.Delory@leuphana.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "M"),
                      family = "Delory",
                      role = c("aut", "cre"),
                      email = "benjamin.delory@leuphana.de"),
               person(given = "Caroline",
                      family = "Baudson",
                      role = "aut"),
               person(given = "Yves",
                      family = "Brostaux",
                      role = "aut"),
               person(given = "Guillaume",
                      family = "Lobet",
                      role = "aut"),
               person(given = c("Patrick", "du"),
                      family = "Jardin",
                      role = "aut"),
               person(given = "Loic",
                      family = "Pages",
                      role = "aut"),
               person(given = "Pierre",
                      family = "Delaplace",
                      role = "aut"))
as necessary.
Maintainer: ‘Marcin Kosinski <m.p.kosinski@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: OAuth application on GitHub
    From: man/archivist-github-integration.Rd
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  addHooksToPrintGitHub.Rd: Repository, archivist-package, alink,
    addHooksToPrint
  archive.Rd: Repository, saveToLocalRepo, md5hash, alink, aoptions
  archivist-github-integration.Rd: Repository
  createGitHubRepo.Rd: createLocalRepo, Repository, oauth2.0_token,
    Tags
  deleteGitHubRepo.Rd: Repository, oauth2.0_token
  pushGitHubRepo.Rd: Repository
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
ahistory 2.878  0.636   5.178
'library' or 'require' call not declared from: ‘gridExtra’
Maintainer: ‘Pulong Ma <mpulong@gmail.com>’

The Description field contains
  Andrew T Cox (2019) <arXiv:1909.01836>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
checkRd: (-1) estimate_t0.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_t0.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) estimate_t0.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitArCo.Rd:75: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Marta Karas <marta.karass@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Error(s) in re-building vignettes:
  ...
--- re-building ‘introArdeco.Rmd’ using rmarkdown

Quitting from introArdeco.Rmd:272-275 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `value[[3L]]()`:
! object 'readfileTmp' not found
---
Backtrace:
    ▆
 1. └─ARDECO::ardeco_get_dataset_data("SNPTD")
 2.   ├─base::suppressWarnings(...)
 3.   │ └─base::withCallingHandlers(...)
 4.   └─base::tryCatch(...)
 5.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 6.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 7.         └─value[[3L]](cond)
 8.           └─base::paste(readfileTmp, conditionMessage(e))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introArdeco.Rmd' failed with diagnostics:
object 'readfileTmp' not found
--- failed re-building ‘introArdeco.Rmd’

SUMMARY: processing the following file failed:
  ‘introArdeco.Rmd’

Error: Vignette re-building failed.
Execution halted
Maintainer: ‘Susana Barbosa <sabarbosa@fc.ul.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Susana",
                    family = "Barbosa",
                    role = c("aut", "cre"),
                    email = "sabarbosa@fc.ul.pt")
as necessary.
checkRd: (-1) recm.Rd:55: Lost braces; missing escapes or markup?
    55 | {In all cases,} \eqn{x_{j,t-1}} {in} \eqn{ECT} {is replaced by} \eqn{x_{j,t} \;\;\;\;\; \forall \;\; q_{j} = 0}
       | ^
checkRd: (-1) recm.Rd:55: Lost braces; missing escapes or markup?
    55 | {In all cases,} \eqn{x_{j,t-1}} {in} \eqn{ECT} {is replaced by} \eqn{x_{j,t} \;\;\;\;\; \forall \;\; q_{j} = 0}
       |                                 ^
checkRd: (-1) recm.Rd:55: Lost braces; missing escapes or markup?
    55 | {In all cases,} \eqn{x_{j,t-1}} {in} \eqn{ECT} {is replaced by} \eqn{x_{j,t} \;\;\;\;\; \forall \;\; q_{j} = 0}
       |                                                ^
checkRd: (-1) uecm.Rd:76: Lost braces; missing escapes or markup?
    76 |   {In addition,} \eqn{x_{j,t-1}} {and} \eqn{\Delta x_{j,t}} {cancel out
       |   ^
checkRd: (-1) uecm.Rd:76: Lost braces; missing escapes or markup?
    76 |   {In addition,} \eqn{x_{j,t-1}} {and} \eqn{\Delta x_{j,t}} {cancel out
       |                                  ^
checkRd: (-1) uecm.Rd:76-77: Lost braces
    76 |   {In addition,} \eqn{x_{j,t-1}} {and} \eqn{\Delta x_{j,t}} {cancel out
       |                                                             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘adb_archive.R’ ‘adb_backup.R’ ‘adb_querry.R’ ‘helpers.R’
    ‘normGeometry.R’
Maintainer: ‘Christopher Prener <chris.prener@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
create_arena 3.935  0.148   5.706
Maintainer: ‘JQ Veenstra <jqveenstra@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "JQ",
                      family = "Veenstra",
                      role = c("aut", "cre"),
                      email = "jqveenstra@gmail.com",
                      comment = "Justin"),
               person(given = "A.I.",
                      family = "McLeod",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  arfima.Rd: TrenchMean
  logLik.arfima.Rd: ltsa
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
tacfplot 0.681  0.031   6.434
Maintainer: ‘Shihao Yang <shihao.yang@isye.gatech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shaoyang",
                      family = "Ning",
                      role = "aut"),
               person(given = "Shihao",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "shihao.yang@isye.gatech.edu"),
               person(given = c("S.", "C."),
                      family = "Kou",
                      role = "aut"))
as necessary.
Maintainer: ‘David J. H. Shih <djh.shih@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J.", "H."),
                    family = "Shih",
                    role = c("aut", "cre"),
                    email = "djh.shih@gmail.com")
as necessary.
'library' or 'require' call not declared from: ‘magrittr’
Maintainer: ‘Haoran Li <hrli@ucdavis.edu>’

The Description field contains
  by Li et al., (2016) <arXiv:1609.08725>. Both one-sample and two-sample
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Livio Finos <livio.finos@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Livio",
                      family = "Finos",
                      role = c("aut", "cre"),
                      email = "livio.finos@unipd.it"),
               person(given = "Jelle",
                      family = "Goeman",
                      role = "aut"),
               person(given = "Wouter",
                      family = "Weeda",
                      role = "aut"),
               person(given = "Jonathan",
                      family = "Rosenblatt",
                      role = "aut"),
               person(given = "Aldo",
                      family = "Solari",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sample_ARMA_coef.R’
Author field differs from that derived from Authors@R
  Author:    ‘Nicolas Frerebeau [aut, cre] (<https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (<https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (03pbgwk21), CNRS [fnd] (02feahw73)’
  Authors@R: ‘Nicolas Frerebeau [aut, cre] (ORCID: <https://orcid.org/0000-0001-5759-4944>), Brice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>, Logo designer), Université Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>), CNRS [fnd] (ROR: <https://ror.org/02feahw73>)’
Specified C++11: please drop specification unless essential
Maintainer: ‘'Imanuel Costigan' <i.costigan@me.com>’

Authors@R field should be a call to person(), or combine such calls.
Malformed Description field: should contain one or more complete sentences.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SmoothMultiarrayModel.Rd: ChromosomalModel,
    CopyNumberSegmentationModel
  byPath.AffymetrixFileSet.Rd: GenericDataFile
  calculateBaseline.ChipEffectSet.Rd: getAverageFile
  doCRMAv1.Rd: Verbose
  doCRMAv2.Rd: Verbose
  doFIRMA.Rd: Verbose
  doGCRMA.Rd: Verbose
  doRMA.Rd: Verbose
  justRMA.Rd: Verbose
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  writeDataFrame.AromaUnitSignalBinaryFile.Rd: TabularTextFile
  writeDataFrame.AromaUnitSignalBinarySet.Rd: TabularTextFileSet
  writeDataFrame.AromaUnitTabularBinaryFile.Rd: TabularTextFile
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Antonio Profico <antonio.profico@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Profico",
                      role = c("aut", "cre"),
                      email = "antonio.profico@gmail.com"),
               person(given = "Costantino",
                      family = "Buzi",
                      role = "aut"),
               person(given = "Silvia",
                      family = "Castiglione",
                      role = "aut"),
               person(given = "Marina",
                      family = "Melchionna",
                      role = "aut"),
               person(given = "Paolo",
                      family = "Piras",
                      role = "aut"),
               person(given = "Pasquale",
                      family = "Raia",
                      role = "aut"),
               person(given = "Alessio",
                      family = "Veneziano",
                      role = "aut"))
as necessary.
Running examples in ‘ARPALData-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_ARPA_Lombardia_AQ_municipal_registry
> ### Title: Download metadata (registry) on air quality monitoring stations
> ###   at municipal level from ARPA Lombardia website
> ### Aliases: get_ARPA_Lombardia_AQ_municipal_registry
> 
> ### ** Examples
> 
> get_ARPA_Lombardia_AQ_municipal_registry()
Error in loadNamespace(x) : there is no package called ‘RSocrata’
Calls: get_ARPA_Lombardia_AQ_municipal_registry ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Maintainer: ‘Rommy C. Olivari <rco1@de.ufpe.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rommy", "C."),
                      family = "Olivari",
                      role = c("aut", "cre"),
                      email = "rco1@de.ufpe.br"),
               person(given = "Kelin",
                      family = "Zhong",
                      role = "aut"),
               person(given = c("Aldo", "M."),
                      family = "Garay",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut"))
as necessary.
Maintainer: ‘James E. Pustejovsky <jepusto@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("James", "E."),
                      family = "Pustejovsky",
                      role = c("aut", "cre"),
                      email = "jepusto@gmail.com"),
               person(given = c("with", "contributions", "from", "Daniel", "M."),
                      family = "Swan",
                      role = "aut"))
as necessary.
Maintainer: ‘C. Beleites <claudia.beleites@chemometrix.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "C.",
                    family = "Beleites",
                    role = c("aut", "cre"),
                    email = "claudia.beleites@chemometrix.eu")
as necessary.
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘main.R’ ‘transformer.Rd’
Maintainer: ‘A.I. McLeod <aimcleod@uwo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("A.", "I."),
                      family = "McLeod",
                      role = "aut"),
               person(given = c("Mark", "M."),
                      family = "Meerschaert",
                      role = "aut"),
               person(given = "Farzad",
                      family = "Sabzikar",
                      role = "aut"),
               person(given = "A.I.",
                      family = "McLeod",
                      role = "cre",
                      email = "aimcleod@uwo.ca"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  artfima-package.Rd: ltsa
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘art_pals.R’ ‘art_pals.Rd’ ‘circle_data.R’ ‘circle_data.Rd’
    ‘grid_maker.R’ ‘group_numbers.R’ ‘packer.R’ ‘packer.Rd’ ‘rotator.R’
    ‘square_data.R’ ‘square_data.Rd’ ‘wave_data.R’ ‘wave_data.Rd’
Maintainer: ‘Pablo J. Villacorta <pjvi@decsai.ugr.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Pablo", "J."),
                    family = "Villacorta",
                    role = c("aut", "cre"),
                    email = "pjvi@decsai.ugr.es")
as necessary.
Maintainer: ‘Michael Hahsler <mhahsler@lyle.smu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/mhahsler/arulesCBA
which should likely be
  https://github.com/mhahsler/arulesCBA/issues
instead.
Maintainer: ‘Michael Hahsler <mhahsler@lyle.smu.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/mhahsler/arulesNBMiner
which should likely be
  https://github.com/mhahsler/arulesNBMiner/issues
instead.
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
calc_selection_weights 3.726  0.242   5.526
Maintainer: ‘Dirk F. Moore <dirkfmoore@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dirk", "F."),
                    family = "Moore",
                    role = c("aut", "cre"),
                    email = "dirkfmoore@gmail.com")
as necessary.
checkRd: (-1) breast_cancer_clean_features.Rd:45: Escaped LaTeX specials: \&
Maintainer: ‘Brian <bleemayer@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Brian", "Lee"),
                      family = "Mayer",
                      role = "aut"),
               person(family = "Brian",
                      role = "cre",
                      email = "bleemayer@gmail.com"))
as necessary.
Maintainer: ‘Jeremy Leipzig <leipzig@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jeremy",
                    family = "Leipzig",
                    role = c("aut", "cre"),
                    email = "leipzig@gmail.com")
as necessary.
Maintainer: ‘Nick Parsons <nick.parsons@warwick.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Parsons",
                    role = c("aut", "cre"),
                    email = "nick.parsons@warwick.ac.uk")
as necessary.
Maintainer: ‘Albrecht Gebhardt <albrecht.gebhardt@aau.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "David", "W.", "Scott", "R", "port", "by", "Albrecht", "Gebhardt", "adopted", "to", "recent", "S-PLUS", "by", "Stephen", "Kaluzny"),
                      family = "<spk@insightful.com>",
                      role = "aut",
                      email = "spk@insightful.com"),
               person(given = "Albrecht",
                      family = "Gebhardt",
                      role = "cre",
                      email = "albrecht.gebhardt@aau.at"))
as necessary.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  meldCD.Rd: binomMeld.test
  signTest.Rd: mcnemarExactDP, binom.exact
  wmwTest.Rd: wilcox_test
  wsrTest.Rd: wilcoxsign_test
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lars Kotthoff <larsko@uwyo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernd",
                      family = "Bischl",
                      role = "aut",
                      email = "bernd_bischl@gmx.net"),
               person(given = "Lars",
                      family = "Kotthoff",
                      role = c("aut", "cre"),
                      email = "larsko@uwyo.edu"),
               person(given = "Pascal",
                      family = "Kerschke",
                      role = c("ctb", "aut"),
                      email = "kerschke@uni-muenster.de"),
               person(given = "Damir",
                      family = "Pulatov",
                      role = c("ctb", "aut"),
                      email = "damirpolat@protonmail.com"))
as necessary.
checkRd: (-1) convertAlgoPerfToWideFormat.Rd:28: Lost braces
    28 | code{NA} means the performance value is not available, possibly because the algorithm run was aborted.
       |     ^
checkRd: (-1) parseASScenario.Rd:40: Lost braces
    40 |   code{NA} means the cost is not available, possibly because the feature computation was aborted.
       |       ^
checkRd: (-1) parseASScenario.Rd:47: Lost braces
    47 |   code{NA} means the cost is not available, possibly because the feature computation was aborted.
       |       ^
checkRd: (-1) parseASScenario.Rd:55: Lost braces
    55 |   code{NA} means the feature is not available, possibly because the feature computation was aborted.
       |       ^
checkRd: (-1) parseASScenario.Rd:62: Lost braces
    62 |   code{NA} means the feature is not available, possibly because the feature computation was aborted.
       |       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  createCVSplits.Rd: write.arff
  summarizeLlamaExps.Rd: Registry, reduceResultsList
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
ASpredict.as_train        5.188  0.326   6.601
figure_comparison.as_data 4.635  0.026   5.640
boxplots.as_data          4.406  0.034   5.119
Maintainer: ‘Damien R. Farine <dfarine@ab.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Damien", "R."),
                    family = "Farine",
                    role = c("aut", "cre"),
                    email = "dfarine@ab.mpg.de")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
network_swap 6.047  0.176   7.114
Maintainer: ‘Matt Wayland <mw283@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Wayland",
                    role = c("aut", "cre"),
                    email = "mw283@cam.ac.uk")
as necessary.
Maintainer: ‘Vivien Goepp <vivien.goepp@gmail.com>’

The Description field contains
  Selection", <arXiv:1808.01770>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Il-Youp Kwak <ikwak2@cau.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Il-Youp",
                      family = "Kwak",
                      role = c("aut", "cre"),
                      email = "ikwak2@cau.ac.kr"),
               person(given = c("others", "in", "each", "function"),
                      family = "manual)",
                      role = "aut",
                      comment = "s"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ped.pine.Rd’ ‘ped.salmon.Rd’ ‘pheno.apple.Rd’ ‘pheno.pine.Rd’
    ‘pheno.salmon.Rd’
Maintainer: ‘Miguel de Carvalho <miguel.decarvalho@ed.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
resid_quasi 5.966   0.05   7.645
Maintainer: ‘Maximilian Nagl <maximilian.nagl@ur.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Maximilian",
                      family = "Nagl",
                      role = c("aut", "cre"),
                      email = "maximilian.nagl@ur.de"),
               person(given = "Yevhen",
                      family = "Havrylenko",
                      role = "aut"),
               person(given = "Marius",
                      family = "Pfeuffer",
                      role = "aut"),
               person(given = "Kevin",
                      family = "Jakob",
                      role = "aut"),
               person(given = "Matthias",
                      family = "Fischer",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Roesch",
                      role = "aut"))
as necessary.
Maintainer: ‘Rolf Turner <r.turner@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rolf",
                    family = "Turner",
                    role = c("aut", "cre"),
                    email = "r.turner@auckland.ac.nz")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) plot.AssetPricing.Rd:199-200: Lost braces
   199 |   yakka. (Note that \code{flap} stands for dQuote{function list
       |                                                  ^
Maintainer: ‘Kuan-Yu (Alex) Chen <alexkychen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kuan-Yu",
                      family = "Chen",
                      role = c("aut", "cre"),
                      comment = "Alex"),
               person(given = c("Elizabeth", "A."),
                      family = "Marschall",
                      role = "aut"),
               person(given = c("Michael", "G."),
                      family = "Sovic",
                      role = "aut"),
               person(given = c("Anthony", "C."),
                      family = "Fries",
                      role = "aut"),
               person(given = c("H.", "Lisle"),
                      family = "Gibbs",
                      role = "aut"),
               person(given = c("Stuart", "A."),
                      family = "Ludsin",
                      role = "aut"),
               person(given = "Kuan-Yu",
                      family = "Chen",
                      role = "cre",
                      email = "alexkychen@gmail.com",
                      comment = "Alex"))
as necessary.
Maintainer: ‘Damien Farine <dfarine@orn.mpg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "William",
                      family = "Hoppitt",
                      role = "aut"),
               person(given = "Damien",
                      family = "Farine",
                      role = c("aut", "cre"),
                      email = "dfarine@orn.mpg.de"))
as necessary.
Maintainer: ‘Lin Wang <wanglin2009@amss.ac.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Lin",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "wanglin2009@amss.ac.cn"),
               person(given = "Wei",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Qizhai",
                      family = "Li",
                      role = "aut"),
               person(given = "Weicheng",
                      family = "Zhu",
                      role = "ctb"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  nmax3.Rd: pmvnorm
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Damien Farine <damien.farine@anu.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damien",
                    family = "Farine",
                    role = c("aut", "cre"),
                    email = "damien.farine@anu.edu.au")
as necessary.
Maintainer: ‘Krämer Konrad <konrad_kraemer@yahoo.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Krämer",
                    family = "Konrad",
                    role = c("aut", "cre"),
                    email = "konrad_kraemer@yahoo.de")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/Konrad1991/ast2ast
which should likely be
  https://github.com/Konrad1991/ast2ast/issues
instead.
Specified C++11: please drop specification unless essential
checkRd: (-1) readOEM.Rd:34: Lost braces
    34 |   always, the identifier has the format YYYY-NNNP{PP}, where YYYY is the year
       |                                                  ^
checkRd: (-1) readOEM.Rd:36: Lost braces
    36 |   during year YYYY and P{PP} is a part specifier comprising 1 to 3 capital letters
       |                         ^
checkRd: (-1) readOEM.Rd:74-75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readOEM.Rd:76-79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) readOEM.Rd:80-86: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  hpop.Rd: ode
  readGLONASSNavigationRINEX.Rd: nanotime
  readGPSNavigationRINEX.Rd: nanotime
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Charles J. Geyer <geyer@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Charles", "J."),
                    family = "Geyer",
                    role = c("aut", "cre"),
                    email = "geyer@umn.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pickle.Rd: trust
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ali Ghanbari  <a.ghanbari541@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Parinaz",
                      family = "Mehdipour",
                      role = "aut",
                      email = "mehdipoor.p@gmail.com"),
               person(given = "Ali",
                      family = "Ghanbari",
                      role = c("cre", "aut"),
                      email = "a.ghanbari541@gmail.com"),
               person(given = "Farshad",
                      family = "Farzadfar",
                      role = "cph",
                      email = "farzadfar3@yahoo.com"))
as necessary.
Maintainer: ‘Andrew Harris <harris@astro.umd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Harris",
                    role = c("aut", "cre"),
                    email = "harris@astro.umd.edu")
as necessary.
Maintainer: ‘Javaria Ahmad Khan <jakhan0@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Javaria", "Ahmad"),
                      family = "Khan",
                      role = c("aut", "cre"),
                      email = "jakhan0@yahoo.com"),
               person(given = "Atif",
                      family = "Akbar.",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AsyK-package.Rd: mse
  Laplace.Rd: mse
  RIG.Rd: mse
  plot.Laplace.Rd: mse
  plot.RIG.Rd: mse
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Richard M. Single <rsingle@uvm.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Richard", "M."),
                    family = "Single",
                    role = c("aut", "cre"),
                    email = "rsingle@uvm.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Berrie Zielman <berrie.zielman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Berrie",
                    family = "Zielman",
                    role = c("aut", "cre"),
                    email = "berrie.zielman@gmail.com")
as necessary.
Maintainer: ‘Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Cqls",
                      family = "Team",
                      role = "aut"),
               person(given = c("Pierre", "Lafaye"),
                      family = "de Micheaux",
                      role = "cre",
                      email = "lafaye@unsw.edu.au"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hongyuan",
                      family = "Cao",
                      role = "aut"),
               person(given = "Donglin",
                      family = "Zeng",
                      role = "aut"),
               person(given = "Jialiang",
                      family = "Li",
                      role = "aut"),
               person(given = c("Jason", "P."),
                      family = "Fine",
                      role = "aut"),
               person(given = c("Shannon", "T."),
                      family = "Holloway",
                      role = c("aut", "cre"),
                      email = "shannon.t.holloway@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
atable 4.003  0.542   5.627
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ATA.BoxCoxAttr.Rd: BoxCox, InvBoxCox, BoxCox.lambda
  ATA.Decomposition.Rd: stlplus
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
ATA.Accuracy 4.005  0.573   5.214
checkRd: (-1) ataCoKriging.Rd:52: Lost braces; missing escapes or markup?
    52 | only one contrained condition for all points and all variables, \\sum_{i=1}^n\\lambda_i +\\sum_{j=1}^m\\beta_j =1, assuming expected means of variables known and constant with the study area.
       |                                                                       ^
checkRd: (-1) ataCoKriging.Rd:52: Lost braces; missing escapes or markup?
    52 | only one contrained condition for all points and all variables, \\sum_{i=1}^n\\lambda_i +\\sum_{j=1}^m\\beta_j =1, assuming expected means of variables known and constant with the study area.
       |                                                                                                ^
'library' or 'require' call not declared from: ‘sp’
Maintainer: ‘Sokbae Lee <sl3841@columbia.edu>’

The Description field contains
  Pooling Limited Information across Observations," <arXiv:2111.05243>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) simulation_dgp.Rd:14: Lost braces; missing escapes or markup?
    14 | \item{x_discrete}{TRUE if the distribution of the covariate is uniform on {-3.0, -2.9, ..., 3.0} and
       |                                                                           ^
checkRd: (-1) simulation_dgp.Rd:23: Lost braces
    23 | \item{att_oracle}{the sample analog of E[D{Y(1) - Y(0)}|D=1]}
       |                                           ^
Maintainer: ‘Vladimir Polony <podalv@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vladimir",
                    family = "Polony",
                    role = c("aut", "cre"),
                    email = "podalv@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
ChileClimateData 0.427  0.112   8.221
Maintainer: ‘Simon Mak <smak6@gatech.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Mak",
                    role = c("aut", "cre"),
                    email = "smak6@gatech.edu")
as necessary.

The Description field contains
  <arXiv:1712.03589>. This work was supported by USARO grant
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘atmopt-package.Rd’:
    \keyword{ Robust optimization, discrete optimizati [TRUNCATED]
Maintainer: ‘Emmanuel Blondel <emmanuel.blondel1@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/eblondel/atom4R
which should likely be
  https://github.com/eblondel/atom4R/issues
instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘atpol_grids.R’ ‘miscRscript.r’ ‘plot_points_on_atpol.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘catchment_sim.R’ ‘elementary_pop.R’
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
plot.alarm_plot_data 5.403  0.049   6.437
eval_metrics         5.008  0.267   6.086
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
f_plot_distrib_3D 4.782  0.516   6.005
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘convert.r’
Maintainer: ‘Debin Qiu <debinqiu@uga.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Debin",
                    family = "Qiu",
                    role = c("aut", "cre"),
                    email = "debinqiu@uga.edu")
as necessary.
Maintainer: ‘Jonas Moss <jonas.gjertsen@gmail.com>’

The Description field contains
  Implements the methods described in Moss (2019, <arxiv:1911.01576>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michel Ballings <Michel.Ballings@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michel",
                      family = "Ballings",
                      role = c("aut", "cre"),
                      email = "michel.ballings@gmail.com"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Maintainer: ‘Josh Gardner <jpgard@umich.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Bernhard Lehnert <bernhard.lehnert@med.uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bernhard",
                    family = "Lehnert",
                    role = c("aut", "cre"),
                    email = "bernhard.lehnert@med.uni-greifswald.de")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘gg_freiburg.Rd’
Maintainer: ‘Simon Urbanek <simon.urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "simon.urbanek@r-project.org")
as necessary.
checkRd: (-1) audioSample.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) audioSample.Rd:21: Lost braces in \itemize; meant \describe ?
File ‘audio/libs/audio.so’:
  Found non-API calls to R: ‘EXTPTR_PTR’, ‘R_checkActivity’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Glen Meeden <glen@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Glen",
                      family = "Meeden.",
                      role = "aut",
                      email = "glen@stat.umn.edu"),
               person(given = "Glen",
                      family = "Meeden",
                      role = "cre",
                      email = "glen@stat.umn.edu"))
as necessary.
Maintainer: ‘Giancarlo Vercellino <giancarlo.vercellino@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Giancarlo",
                    family = "Vercellino",
                    role = c("aut", "cre"),
                    email = "giancarlo.vercellino@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bind_lr.Rd’ ‘lex_density.Rd’
Author field differs from that derived from Authors@R
  Author:    ‘J. Aravind [aut, cre] (<https://orcid.org/0000-0002-4791-442X>), S. Mukesh Sankar [aut] (<https://orcid.org/0000-0001-5459-392X>), Dhammaprakash Pandhari Wankhede [aut] (<https://orcid.org/0000-0001-6384-8664>), Vikender Kaur [aut] (<https://orcid.org/0000-0001-9698-7329>), ICAR-NBGPR [cph] (www.nbpgr.ernet.in)’
  Authors@R: ‘J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>), S. Mukesh Sankar [aut] (ORCID: <https://orcid.org/0000-0001-5459-392X>), Dhammaprakash Pandhari Wankhede [aut] (ORCID: <https://orcid.org/0000-0001-6384-8664>), Vikender Kaur [aut] (ORCID: <https://orcid.org/0000-0001-9698-7329>), ICAR-NBGPR [cph] (url: www.nbpgr.ernet.in)’
Maintainer: ‘Qihuang Zhang <qihuang.zhang@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qihuang",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "qihuang.zhang@uwaterloo.ca"),
               person(given = c("Grace", "Y."),
                      family = "Yi",
                      role = "aut",
                      email = "yyi@uwaterloo.ca"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
auk_zerofill 1.418  0.286   5.829
Maintainer: ‘Aritra Banerjee <aritra306@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aritra",
                    family = "Banerjee",
                    role = c("aut", "cre"),
                    email = "aritra306@gmail.com")
as necessary.
Maintainer: ‘Dai Feng <daifeng.stat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dai",
                      family = "Feng",
                      role = c("aut", "cre"),
                      email = "daifeng.stat@gmail.com"),
               person(given = "Damjan",
                      family = "Manevski",
                      role = "auc"),
               person(given = c("Maja", "Pohar"),
                      family = "Perme",
                      role = "auc"))
as necessary.
Maintainer: ‘Arjun Sondhi <asondhi@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arjun",
                      family = "Sondhi",
                      role = c("aut", "cre"),
                      email = "asondhi@uw.edu"),
               person(given = "Ken",
                      family = "Rice",
                      role = "aut"))
as necessary.
Maintainer: ‘Vitor Cerqueira <cerqueira.vitormanuel@gmail.com>’

The Description field contains
  arXiv:1706.09367.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dennis Robert <dennis.robert.nm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dennis",
                    family = "Robert",
                    role = c("aut", "cre"),
                    email = "dennis.robert.nm@gmail.com")
as necessary.
checkRd: (-1) get_candidate_covariates.Rd:50: Lost braces
    50 | \item \code{covars_data}   {The \code{data.frame} that is filtered out of \code{df} with only the selected \code{covars}}. The values of the
       |                            ^
checkRd: (-1) get_candidate_covariates.Rd:53: Lost braces
    53 | \item \code{patientIds}   {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}
       |                           ^
checkRd: (-1) get_prioritised_covariates.Rd:40: Lost braces
    40 | \item \code{multiplicative_bias}{The absolute log of the multiplicative bias term for each of the auto-selected prioritised covariates}
       |                                 ^
checkRd: (-1) get_recurrence_covariates.Rd:34: Lost braces
    34 | \item \code{patientIds}   {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}}
       |                           ^
Maintainer: ‘ShengLi Tzeng <slt.cmu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "ShengLi",
                      family = "Tzeng",
                      role = c("aut", "cre"),
                      email = "slt.cmu@gmail.com"),
               person(given = "Hsin-Cheng",
                      family = "Huang",
                      role = "aut"),
               person(given = "Wen-Ting",
                      family = "Wang",
                      role = "ctb"),
               person(given = "Douglas",
                      family = "Nychka",
                      role = "ctb"),
               person(given = "Colin",
                      family = "Gillespie",
                      role = "ctb"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Joshua French <joshua.french@ucdenver.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "French",
                    role = c("aut", "cre"),
                    email = "joshua.french@ucdenver.edu")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Navinkumar Nedunchezhian <navinkumar.nedunchezhian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Navinkumar",
                    family = "Nedunchezhian",
                    role = c("aut", "cre"),
                    email = "navinkumar.nedunchezhian@gmail.com")
as necessary.
Maintainer: ‘Yuan Tang <terrytangyuan@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yao Geng <gengyao0103521@qq.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaoyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Yao",
                      family = "Geng",
                      role = "cre",
                      email = "gengyao0103521@qq.com"))
as necessary.
checkRd: (-1) Autoplotprotein-package.Rd:27: Lost braces
    27 | code{\link{help}}
       |     ^
checkRd: (-1) Autoplotprotein.Rd:25: Lost braces
    25 | code{\link{help}}
       |     ^
checkRd: (-1) data.Rd:22: Lost braces
    22 | code{\link{help}}
       |     ^
checkRd: (-1) domain_data.Rd:29: Lost braces
    29 | code{\link{help}}
       |     ^
checkRd: (-1) length_data.Rd:32: Lost braces
    32 | code{\link{help}}
       |     ^
checkRd: (-1) plotdomain.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotmutagensis.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) plotsite.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
checkRd: (-1) site_data.Rd:30: Lost braces
    30 | code{\link{help}}
       |     ^
Specified C++11: please drop specification unless essential
checkRd: (-1) noauto_scorecard.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{fit}{See glm {stats}.}
       |                    ^
checkRd: (-1) noauto_scorecard2.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{fit}{See glm {stats}.}
       |                    ^
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
bins_chim 5.673   0.06   6.769
Maintainer: ‘Feng Xie <xief@u.duke.nus.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
generate_slides   5.009  0.113   6.427
t_ae_pt_soc_slide 3.991  0.028   5.301
Maintainer: ‘Aaron England <aaron.england24@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "England",
                    role = c("aut", "cre"),
                    email = "aaron.england24@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
AutoTransQF 6.25  0.235   7.594
Maintainer: ‘Vivien Roussez <vivien.roussez@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vivien",
                    family = "Roussez",
                    role = c("aut", "cre"),
                    email = "vivien.roussez@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
getBestModel 5.594  0.287   7.198
checkRd: (-1) avar_mo_cpp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_mo_cpp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_mo_cpp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) avar_to_cpp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Christina Harvey <harveyca@umich.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
get_elements 0.919  0.065   6.124
Maintainer: ‘Gergely Daroczi <daroczig@rapporter.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gergely",
                    family = "Daroczi",
                    role = c("aut", "cre"),
                    email = "daroczig@rapporter.net")
as necessary.
Maintainer: ‘Gergely Daroczi <daroczig@rapporter.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gergely",
                    family = "Daroczi",
                    role = c("aut", "cre"),
                    email = "daroczig@rapporter.net")
as necessary.
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antoine Sachet <antoine.sac@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jonathan Stott <jonathan.stott@magairports.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:66: Escaped LaTeX specials: \$
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \#
checkRd: (-1) ec2_create_security_group.Rd:79: Escaped LaTeX specials: \$
Maintainer: ‘Simon Urbanek <simon.urbanek@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Simon Urbanek <simon.urbanek@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antoine Sachet <antoine.sac@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Simon Urbanek <simon.urbanek@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jonathan Stott <jonathan.stott@magairports.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antoine Sachet <antoine.sac@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antoine Sachet <antoine.sac@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) cosmos_mongo.Rd:21: Lost braces; missing escapes or markup?
    21 | \item{host}{For \code{cosmos_mongo_endpoint}, the URL of the Cosmos DB MongoDB endpoint. Usually of the form "https://{account-name}.mongo.cosmos.azure.com:443/".}
       |                                                                                                                       ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  call_batch_endpoint.Rd: AzureToken
  call_graph.Rd: AzureToken
  graph_login.Rd: get_azure_token
  ms_graph.Rd: get_azure_token
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AzureKusto.Rd: dbReadTable, dbWriteTable, dbGetQuery, dbSendStatement
  DBI_query.Rd: dbConnect, dbReadTable, dbWriteTable
  DBI_table.Rd: dbConnect
  az_kusto.Rd: az_resource_group
  copy_to.kusto_database_endpoint.Rd: collect
  kusto-DBI.Rd: dbConnect, dbDisconnect, dbCanConnect, dbExistsTable,
    dbCreateTable, dbRemoveTable, dbReadTable, dbWriteTable,
    dbGetQuery, dbSendQuery, dbFetch, dbSendStatement, dbExecute,
    dbListFields, dbColumnInfo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  az_resource_group.Rd: AzureToken
  az_rm.Rd: AzureToken
  az_subscription.Rd: AzureToken
  azure_login.Rd: AzureToken
  call_azure.Rd: AzureToken
  utils.Rd: AzureToken
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  az_storage.Rd: az_resource_group
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Adam B. Olshen <adam.olshen@ucsf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Adam", "B."),
                      family = "Olshen",
                      role = c("aut", "cre"),
                      email = "adam.olshen@ucsf.edu"),
               person(given = c("Richard", "A."),
                      family = "Olshen",
                      role = "aut"),
               person(given = c("Barry", "S."),
                      family = "Taylor",
                      role = "aut"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter), Joel Nitta [aut] (<https://orcid.org/0000-0003-4719-7472>, joelnitta)’
  Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [aut] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter), Joel Nitta [aut] (ORCID: <https://orcid.org/0000-0003-4719-7472>, github: joelnitta)’
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robin", "K.", "S."),
                    family = "Hankin",
                    role = c("aut", "cre"),
                    email = "hankin.robin@gmail.com")
as necessary.
Maintainer: ‘J. Jack Lee <jjlee@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nan",
                      family = "Chen",
                      role = "aut"),
               person(given = c("J.", "Jack"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "jjlee@mdanderson.org"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  backbone.suggest.Rd: Matrix, igraph
  disparity.Rd: Matrix, igraph
  fdsm.Rd: Matrix, igraph
  fixedcol.Rd: Matrix, igraph
  fixedfill.Rd: Matrix, igraph
  fixedrow.Rd: Matrix, igraph
  global.Rd: Matrix, igraph
  lans.Rd: Matrix, igraph
  mlf.Rd: Matrix, igraph
  osdsm.Rd: Matrix, igraph
  sdsm.Rd: Matrix, igraph
  sparsify.Rd: Matrix, igraph
  sparsify.with.geometric.Rd: Matrix, igraph
  sparsify.with.gspar.Rd: Matrix, igraph
  sparsify.with.hypergeometric.Rd: Matrix, igraph
  sparsify.with.jaccard.Rd: Matrix, igraph
  sparsify.with.localdegree.Rd: Matrix, igraph
  sparsify.with.lspar.Rd: Matrix, igraph
  sparsify.with.meetmin.Rd: Matrix, igraph
  sparsify.with.quadrilateral.Rd: Matrix, igraph
  sparsify.with.simmelian.Rd: Matrix, igraph
  sparsify.with.skeleton.Rd: Matrix, igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christina",
                    family = "Heinze-Deml",
                    role = c("aut", "cre"),
                    email = "heinzedeml@stat.math.ethz.ch")
as necessary.

The Description field contains
  more details, see <arXiv:1506.02494>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Daniel Gerlanc <dgerlanc@enplusadvisors.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeff",
                      family = "Enos",
                      role = "aut",
                      email = "jeff@kanecap.com"),
               person(given = "David",
                      family = "Kane",
                      role = "aut",
                      email = "dave@kanecap.com"),
               person(given = c("with", "contributions", "from", "Kyle"),
                      family = "Campbell",
                      role = "aut",
                      email = "kyle.w.campbell@williams.edu"),
               person(given = "Daniel",
                      family = "Gerlanc",
                      role = c("aut", "cre"),
                      email = "daniel@gerlanc.com"),
               person(given = "Aaron",
                      family = "Schwartz",
                      role = "aut",
                      email = "Aaron.J.Schwartz@williams.edu"),
               person(given = "Daniel",
                      family = "Suo",
                      role = "aut",
                      email = "danielsuo@gmail.com"),
               person(given = "Alexei",
                      family = "Colin",
                      role = "aut",
                      email = "acolin@fas.harvard.edu"),
               person(given = c("and", "Luyi"),
                      family = "Zhao",
                      role = "aut",
                      email = "luyizhao@gmail.com"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘aloocv.R’ ‘cohortODX.R’ ‘computeEndpoints.R’ ‘fit_baclava.R’
    ‘predictODX.R’ ‘s3_methods.R’ ‘utilities.R’
Maintainer: ‘Denis Talbot <denis.talbot@fmed.ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Talbot",
                      role = c("aut", "cre"),
                      email = "denis.talbot@fmed.ulaval.ca"),
               person(given = "Genevieve",
                      family = "Lefebvre",
                      role = "aut"),
               person(given = "Juli",
                      family = "Atherton",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BACprior.lm.Rd: regsubsets
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Chi Wang <chi.wang@uky.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chi",
                    family = "Wang",
                    role = c("aut", "cre"),
                    email = "chi.wang@uky.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Gregor de Cillia [ctb], Dirk Eddelbuettel [ctb], Maëlle Salmon [ctb], Robrecht Cannoodt [ctb] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Alexander Rossell Hayes [ctb] (<https://orcid.org/0000-0001-9412-0457>, rossellhayes), Waldir Leoncio [ctb], Matthew Schuelke [ctb] (<https://orcid.org/0000-0001-5755-1725>, the-mad-statter)’
  Authors@R: ‘Guangchuang Yu [aut, cre] (ORCID: <https://orcid.org/0000-0002-6485-8781>), Gregor de Cillia [ctb], Dirk Eddelbuettel [ctb], Maëlle Salmon [ctb], Robrecht Cannoodt [ctb] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Alexander Rossell Hayes [ctb] (ORCID: <https://orcid.org/0000-0001-9412-0457>, github: rossellhayes), Waldir Leoncio [ctb], Matthew Schuelke [ctb] (ORCID: <https://orcid.org/0000-0001-5755-1725>, github: the-mad-statter)’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘round_rect.r’ ‘waffle.r’
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘baf.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  baf.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
augment.bage_mod 4.937  0.243   6.374
Maintainer: ‘Rafael Santos <rafael.jpsantos@outlook.com>’

The Description field contains
  <arXiv:2001.00636>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
bagged.outliertrees         0.392  0.164   6.884
print.bagged.outlieroutputs 0.302  0.045   6.235
predict.bagged.outliertrees 0.279  0.010   5.966
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  forest_plot.Rd: forestplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jiawei Zhang <zhan4362@umn.edu>’

The Description field contains
  can be found in Zhang, Ding and Yang (2021) <arXiv:1911.03063v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_cyclone.R’
Maintainer: ‘Damien Challet <damien.challet@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Bongiorno",
                      role = "aut"),
               person(given = "Damien",
                      family = "Challet",
                      role = c("aut", "cre"),
                      email = "damien.challet@gmail.com"))
as necessary.

The Description field contains
  hierarchies (2020) <arXiv:2003.05807> and Ch. Bongiorno and D. Challet,
  cleaning (2020) <arXiv:2005.08703>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Caspar J van Lissa <c.j.vanlissa@tilburguniversity.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/cjvanlissa/bain/
which should likely be
  https://github.com/cjvanlissa/bain/issues
instead.
Maintainer: ‘Hao Chen <hxchen@ucdavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hao",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "hxchen@ucdavis.edu"),
               person(given = "Dylan",
                      family = "Small",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fit_lgmr.Rd: stan_model
  infer_data_and_decision_model.Rd: sampling, tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Kyungtaek Park <qkrrudxor147@snu.ac.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyungtaek",
                    family = "Park",
                    role = c("aut", "cre"),
                    email = "qkrrudxor147@snu.ac.kr")
as necessary.
Maintainer: ‘Pawel Dlotko <pdlotko@gmail.com>’

The Description field contains
  topological data analysis" by Pawel Dlotko, (2019) <arXiv:1901.07410>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Mike Kleinsasser <mkleinsa@umich.edu>’

The Description field contains
  <doi:10.1111/biom.13189> and Song et al (2020) <arXiv:2009.11409>,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Volker Schmid <volker.schmid@lmu.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jeff Gill <jgill5402@mac.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jonathan",
                      family = "Homola",
                      role = "aut"),
               person(given = "Danielle",
                      family = "Korman",
                      role = "aut"),
               person(given = "Jacob",
                      family = "Metz",
                      role = "aut"),
               person(given = "Miguel",
                      family = "Pereira",
                      role = "aut"),
               person(given = "Mauricio",
                      family = "Vela",
                      role = "aut"),
               person(given = "Jeff",
                      family = "Gill",
                      role = c("aut", "cre"),
                      email = "jgill5402@mac.com"))
as necessary.
Maintainer: ‘Balasubramanian Narasimhan <naras@stanford.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/motiwari/BanditPAM
which should likely be
  https://github.com/motiwari/BanditPAM/issues
instead.
Author field differs from that derived from Authors@R
  Author:    ‘Balasubramanian Narasimhan [aut, cre], Mo Tiwari [aut] (https://motiwari.com)’
  Authors@R: ‘Balasubramanian Narasimhan [aut, cre], Mo Tiwari [aut] (website: https://motiwari.com)’
possible bashism in configure.ac line 53 (unsafe echo with backslash):
      echo '         To use all CPU cores, you should install OpenMP by running\n                    '
Maintainer: ‘Markus Loecher <markus.loecher@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thomas",
                      family = "Lotze",
                      role = "aut"),
               person(given = "Markus",
                      family = "Loecher",
                      role = c("aut", "cre"),
                      email = "markus.loecher@gmail.com"))
as necessary.
Maintainer: ‘Arya Ebadi <aeba3842@uni.sydney.edu.au>’

The Description field contains
  <arXiv:2302.11837>. Such setups include target-decoy competition (TDC)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "Bill.Venables@gmail.com")
as necessary.
Maintainer: ‘Chen Dong <chendong.math.umd@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chen",
                      family = "Dong",
                      role = c("aut", "cre"),
                      email = "chendong.math.umd@gmail.com"),
               person(given = "Michel",
                      family = "Wedel",
                      role = "aut"),
               person(given = "Anna",
                      family = "Kopyakova",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BANOVA.run.Rd: rstan
  pairs.BANOVA.Rd: rstan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  getBanterModel.Rd: randomForest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Eduardo Flores <eduardo@enelmargen.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eduardo",
                    family = "Flores",
                    role = c("aut", "cre"),
                    email = "eduardo@enelmargen.org")
as necessary.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘dexpfit.R’ ‘expfit.R’ ‘icarfit.R’ ‘logisticfit.R’
Maintainer: ‘Roman Hornung <hornung@ibe.med.uni-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Roman",
                      family = "Hornung",
                      role = c("aut", "cre"),
                      email = "hornung@ibe.med.uni-muenchen.de"),
               person(given = "David",
                      family = "Causeur",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘János Hevner <hevnerjanos@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "János",
                    family = "Hevner",
                    role = c("aut", "cre"),
                    email = "hevnerjanos@hotmail.com")
as necessary.
checkRd: (-1) barcoding.spe.identify2.Rd:27: Lost braces; missing escapes or markup?
    27 | read.dna() from package {ape} was used to obtain DNAbin object for unaligned non-coding barcodes.
       |                         ^
Maintainer: ‘Kamil Erguler <k.erguler@cyi.ac.cy>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kamil",
                    family = "Erguler",
                    role = c("aut", "cre"),
                    email = "k.erguler@cyi.ac.cy")
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Justin",
                      family = "Bleich",
                      role = "aut",
                      comment = c(ROR = "R package")),
               person(given = c("see", "COPYRIGHTS", "file", "for", "the", "authors", "of", "the", "java"),
                      family = "libraries",
                      role = "aut"))
as necessary.
Maintainer: ‘Adam Kapelner <kapelner@qc.cuny.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Kapelner",
                      role = c("aut", "cre"),
                      email = "kapelner@qc.cuny.edu"),
               person(given = "Justin",
                      family = "Bleich",
                      role = "aut",
                      comment = c(ROR = "R package")))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘acceptenceRate.R’ ‘extractTreeData.R’ ‘generic_functions.R’
    ‘permVint.R’ ‘plot_all_trees.R’ ‘splitDensity.R’ ‘treeBarPlot.R’
    ‘treeDataframe.R’ ‘treeList.R’ ‘vintPlot.R’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
plotTrees 5.441  0.047   6.924
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
mc.crisk.pwbart 3.032  0.765   6.257
rs.pbart        0.918  1.843   5.428
'library' or 'require' calls not declared from:
  ‘rpart’ ‘rpart.plot’
Maintainer: ‘Qingyan Xiang <qyxiang@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Qingyan",
                      family = "Xiang",
                      role = c("aut", "cre"),
                      email = "qyxiang@bu.edu"),
               person(given = "Naveen",
                      family = "Narisetty",
                      role = "aut",
                      email = "naveen@illinois.edu"))
as necessary.
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Urbanek",
                    role = c("aut", "cre"),
                    email = "Simon.Urbanek@r-project.org")
as necessary.
File ‘base64enc/libs/base64enc.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘chadwick_installation.R’
checkRd: (-1) bd_collect.Rd:30: Lost braces; missing escapes or markup?
    30 | the {dplyr}'s verbs and thus use it in local memory completely.
       |     ^
checkRd: (-1) bd_write.Rd:52: Lost braces; missing escapes or markup?
    52 | Writes a remote table to disk that was called via {bdplyr}.
       |                                                   ^
checkRd: (-1) bdplyr.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Compatibility with {dplyr} verbs without using SQL language}
       |                           ^
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
tidySet 3.881  0.215   5.184
Maintainer: ‘Marco Vidal-Cordasco <marcovidalcordasco@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "B."),
                      family = "Marín-Arroyo",
                      role = "aut"),
               person(given = "David",
                      family = "Ocio",
                      role = "aut"),
               person(given = "Marco",
                      family = "Vidal-Cordasco",
                      role = "cre",
                      email = "marcovidalcordasco@gmail.com"),
               person(given = "Delphine",
                      family = "Vettese"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
scatterplot      5.039  0.023   6.542
plot.kclustering 4.827  0.010   6.683
kclustering      4.460  0.000   6.311
shotchart        4.373  0.020   5.130
hclustering      4.035  0.077   5.469
plot.hclustering 4.011  0.003   5.239
Maintainer: ‘Michael J. Kane <michael.kane@yale.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘Lukas Baumann [aut, cre] (<https://orcid.org/0000-0001-7931-7470>), Lukas Sauer [ctb] (0000-0002-1340-9994)’
  Authors@R: ‘Lukas Baumann [aut, cre] (ORCID: <https://orcid.org/0000-0001-7931-7470>), Lukas Sauer [ctb] (ORIC: 0000-0002-1340-9994)’
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
adjust_lambda 4.278  0.027   5.518
File ‘BAS/libs/BAS.so’:
  Found non-API call to R: ‘SETLENGTH’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Maintainer: ‘Michel Lang <michellang@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernd",
                      family = "Bischl",
                      role = "aut",
                      email = "bernd_bischl@gmx.net"),
               person(given = "Michel",
                      family = "Lang",
                      role = c("aut", "cre"),
                      email = "michellang@gmail.com"),
               person(given = "Olaf",
                      family = "Mersmann",
                      role = "aut",
                      email = "olafm@p-value.net"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) ExperimentJob.Rd:14: Lost braces
    14 |   \item{\code{algo.id} [\code{character(1)}]:}{algo.id}{Algorithm ID.}
       |                                                        ^
checkRd: (-1) getAlgorithmIds.Rd:13: Lost braces
    13 | \item{ids}{[code{integer}]\cr
       |                 ^
checkRd: (-1) getProblemIds.Rd:13: Lost braces
    13 | \item{ids}{[code{integer}]\cr
       |                 ^
checkRd: (-1) makeExperimentRegistry.Rd:28: Lost braces
    28 | Default is dQuote{<name of registry>_files} in current working directory.}
       |                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  getExperimentParts.Rd: Job
  reduceResultsExperimentsParallel.Rd: batchMapQuick
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
addExperiments 8.728  0.282  12.129
getResultVars  8.432  0.058  11.294
getIndex       5.886  0.095   7.459
Maintainer: ‘Bernd Bischl <bernd_bischl@gmx.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernd",
                      family = "Bischl",
                      role = c("aut", "cre"),
                      email = "bernd_bischl@gmx.net"),
               person(given = "Michel",
                      family = "Lang",
                      role = "aut",
                      email = "michellang@gmail.com"),
               person(given = "Henrik",
                      family = "Bengtsson",
                      role = "aut",
                      email = "henrikb@braju.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
batchReduceResults 7.435  0.032   9.943
batchMapResults    6.316  0.102   7.732
batchReduce        6.319  0.035   7.795
submitJobs         5.414  0.008   7.443
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘batchLLM.R’ ‘batchLLM_shiny.R’
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Murali",
                      family = "Haran",
                      role = "aut",
                      email = "mharan@stat.psu.edu"),
               person(given = "John",
                      family = "Hughes",
                      role = c("aut", "cre"),
                      email = "drjphughesjr@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Thomas Hoffmann <tjhoffm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Hoffmann",
                    role = c("aut", "cre"),
                    email = "tjhoffm@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sherry Zhao<sxzhao@gwu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sherry",
                    family = "Zhao",
                    role = c("aut", "cre"),
                    email = "sxzhao@gwu.edu")
as necessary.
checkRd: (-1) JobCollection.Rd:41: Lost braces
    41 |  \item{namespaces}{code{character} with required packages to load via \code{\link[base]{requireNamespace}}.}
       |                        ^
checkRd: (-1) addAlgorithm.Rd:31: Lost braces
    31 | Algorithms are functions which get the code{data} part as well as the problem instance (the return value of the
       |                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  JoinTables.Rd: data.table
  Worker.Rd: R6Class
  addExperiments.Rd: data.table
  batchMap.Rd: data.table
  batchMapResults.Rd: data.table
  batchReduce.Rd: data.table
  estimateRuntimes.Rd: data.table
  findJobs.Rd: data.table
  getErrorMessages.Rd: data.table
  getJobTable.Rd: data.table
  grepLogs.Rd: data.table
  killJobs.Rd: data.table
  removeExperiments.Rd: data.table
  resetJobs.Rd: data.table
  runHook.Rd: data.table
  submitJobs.Rd: data.table
  summarizeExperiments.Rd: data.table
  unwrap.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Deepankar Basu <dbasu@umass.edu>’

The Description field contains
  to the method of Basu (2022) <arXiv:2203.12431>.  You supply the data,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Oliver Keyes <ironholds@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Oliver",
                      family = "Keyes",
                      role = c("aut", "cre"),
                      email = "ironholds@gmail.com"),
               person(given = c("Ruben", "C."),
                      family = "Arslan",
                      role = "ctb"),
               person(given = "Christopher",
                      family = "Akiki",
                      role = "ctb"),
               person(given = "Mine",
                      family = "Cetinkaya-Rundel",
                      role = "ctb"),
               person(given = "Peter",
                      family = "Meissner",
                      role = "ctb"),
               person(given = "Ilaria",
                      family = "Prosdocimi",
                      role = "ctb"),
               person(given = "Thomas",
                      family = "Leeper",
                      role = "ctb"),
               person(given = "Amy",
                      family = "Lee",
                      role = "ctb"),
               person(given = "Adolfo",
                      family = "Álvarez",
                      role = "ctb"))
as necessary.
Maintainer: ‘Chunqiao Luo <chunqiaoluo@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Evan A Martin <evanamartin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Evan", "A"),
                      family = "Martin",
                      role = c("aut", "cre"),
                      email = "evanamartin@gmail.com"),
               person(given = c("Audrey", "Qiuyan"),
                      family = "Fu",
                      role = "aut"))
as necessary.

The Description field contains
  References: Martin and Fu (2019) <arXiv:1909.10678>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) plotDistributions.Rd:32: Lost braces
    32 | plot{...} functions are generated programmatically so the function calls in
       |     ^
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
bayes_ammi 5.441  0.368   7.664
Maintainer: ‘Riko Kelter <riko_k@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Riko",
                    family = "Kelter",
                    role = c("aut", "cre"),
                    email = "riko_k@gmx.de")
as necessary.

The Description field contains
  mixtures, see Kelter (2019) <arXiv:1906.07524>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jane Pan <jpan1@ucla.edu>’

The Description field contains
  (2021) <arXiv:2112.03509>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pwr_curve.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
bayes_sim 3.594  0.173   5.076
Maintainer: ‘Achal Lama <achal.lama@icar.gov.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Achal",
                      family = "Lama",
                      role = c("aut", "cre"),
                      email = "achal.lama@icar.gov.in"),
               person(given = c("Girish", "K"),
                      family = "Jha",
                      role = "aut"),
               person(given = c("K", "N"),
                      family = "Singh",
                      role = "aut"),
               person(given = "Bishal",
                      family = "Gurung",
                      role = "aut"))
as necessary.
Maintainer: ‘Panagiotis Papastamoulis <papapast@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panagiotis",
                    family = "Papastamoulis",
                    role = c("aut", "cre"),
                    email = "papapast@yahoo.gr")
as necessary.
checkRd: (-1) coupledMetropolis.Rd:83-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:86-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:89-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:92-94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:95-97: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:98-100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:101-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:104-106: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:107-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:110-112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:113-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:116-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:119-121: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:122-124: Lost braces in \itemize; meant \describe ?
checkRd: (-1) coupledMetropolis.Rd:125-127: Lost braces in \itemize; meant \describe ?
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Li-Syuan Hong <lisyuan@nhri.org.tw>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Li-Syuan",
                    family = "Hong",
                    role = c("aut", "cre"),
                    email = "lisyuan@nhri.org.tw")
as necessary.
Maintainer: ‘Stanley E. Lazic <stan.lazic@cantab.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bruno",
                      family = "Contrino",
                      role = "aut"),
               person(given = c("Stanley", "E."),
                      family = "Lazic",
                      role = c("aut", "cre"),
                      email = "stan.lazic@cantab.net"))
as necessary.
Maintainer: ‘Nick Golding <nick.golding.research@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nick",
                      family = "Golding",
                      role = c("aut", "cre"),
                      email = "nick.golding.research@gmail.com"),
               person(given = c("David", "J."),
                      family = "Harris",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BayesComm-package.Rd’:
    http://dx.doi.org/10.6084/m9.figshare.767289
checkRd: (-1) BayesComm-package.Rd:33: Escaped LaTeX specials: \&
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.bayescomm.Rd: plot.mcmc
  summary.bayescomm.Rd: summary.mcmc
  window.bayescomm.Rd: window.mcmc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Maintainer: ‘Aldo M. Garay <medina_garay@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Aldo", "M."),
                      family = "Garay",
                      role = c("aut", "cre"),
                      email = "medina_garay@yahoo.com"),
               person(given = c("Monique", "B."),
                      family = "Massuia",
                      role = "aut",
                      email = "moniquemassuia@gmail.com"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut",
                      email = "hlachos@ime.unicamp.br"),
               person(given = c("Eraldo", "B.", "Anjos"),
                      family = "Filho",
                      role = "aut",
                      email = "ebdaf1@de.ufpe.br"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
B_WP.IDX    6.618  0.040   8.732
B_GC.IDX    6.268  0.075   7.572
plot_BCVI   5.809  0.012   7.182
B_CCV.IDX   5.261  0.109   6.413
B_WL.IDX    5.164  0.000   6.554
B_KWON.IDX  5.098  0.047   7.376
B_TANG.IDX  5.123  0.000   6.132
B_KWON2.IDX 5.042  0.007   6.301
B_KPBM.IDX  5.038  0.003   6.827
B_PBM.IDX   5.033  0.004   7.165
B_HF.IDX    5.015  0.007   6.324
B_XB.IDX    4.932  0.003   6.272
Maintainer: ‘Kjetil Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Compiled", "by", "Kjetil"),
                      family = "Halvorsen",
                      role = "aut"),
               person(given = "Kjetil",
                      family = "Halvorsen",
                      role = "cre",
                      email = "kjetil1001@gmail.com"))
as necessary.
checkRd: (-1) dilution.Rd:13: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) dilution.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:16: Escaped LaTeX specials: \$
checkRd: (-1) personality.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) bayesDccGarch.Rd:91: Lost braces; missing escapes or markup?
    91 | \item{$H_n1 }{ Bayesian prediction of volatilities and co-volatilities for y_{n+1}.}
       |                                                                              ^
checkRd: (-1) bayesDccGarch.Rd:92: Lost braces; missing escapes or markup?
    92 | \item{$R_n1 }{ Bayesian prediction of coditional correlation for y_{n+1}.}
       |                                                                    ^
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
find_regimes 3.533  0.113   6.128
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Carlos Pérez <caaperezag@unal.edu.co>’

The Description field contains
  Cardona-Jiménez (2021) <arXiv:2111.01318>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) GroupSingleVoxelFETS.Rd:53: Lost braces
    53 | online trajectories related to the state parameter, the simulated BOLD responses, \mjseqn{\hat{Y}}{ascii}.
       |                                                                                                   ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bayes_colors.R’ ‘bayes_label.R’
Maintainer: ‘Jaejoon Song <jaejoonsong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jaejoon",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "jaejoonsong@gmail.com"),
               person(given = "Satoshi",
                      family = "Morita",
                      role = "aut"),
               person(given = c("J.", "Jack"),
                      family = "Lee",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
BayesFBHborrow.WBorrow 4.683  0.069   5.793
BayesFBHborrow         4.560  0.171   5.957
Maintainer: ‘Asael Alonzo Matamoros <asael.alonzo@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Holt.Rd: auto.arima
  Hw.Rd: auto.arima
  LocalLevel.Rd: auto.arima
  autoplot.ts.Rd: geom_forecast, fortify
  forecast.varstan.Rd: forecast.ts, ets, stlf
  fourier.Rd: seasonaldummy
  garch.Rd: auto.arima
  loo.varstan.Rd: psis, pareto-k-diagnostic, loo_compare
  ssm.Rd: auto.arima
  stan_Holt.Rd: auto.arima
  stan_Hw.Rd: auto.arima
  stan_LocalLevel.Rd: auto.arima
  stan_garch.Rd: auto.arima
  stan_ssm.Rd: auto.arima
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘David Ardia <david.ardia.ch@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Doug Fletcher <tug25070@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Subhadeep",
                      family = "Mukhopadhyay",
                      role = "aut"),
               person(given = "Douglas",
                      family = "Fletcher",
                      role = "aut"),
               person(given = "Doug",
                      family = "Fletcher",
                      role = "cre",
                      email = "tug25070@temple.edu"))
as necessary.
checkRd: (-1) gMLE.bb.Rd:18: Lost braces
    18 |   \item{optim.method}{optimization method in \code{optim()}{stats}.}
       |                                                            ^
Maintainer: ‘Matthew Carli <carlimm@mymail.vcu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Wheeler",
                      role = "aut"),
               person(given = "Matthew",
                      family = "Carli",
                      role = c("aut", "cre"),
                      email = "carlimm@mymail.vcu.edu"))
as necessary.
Maintainer: ‘Gordon J. Ross <gordon@gordonjross.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Gordon", "J."),
                    family = "Ross",
                    role = c("aut", "cre"),
                    email = "gordon@gordonjross.co.uk")
as necessary.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
continuous_ss_sdf   4.853  0.095   7.137
BayesianFM          4.326  0.044   5.064
dirac_ss_sdf_pvalue 4.036  0.051   6.048
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
assessDesign 6.385  0.268   7.615
checkRd: (-1) bma.bx.cy.Rd:69: Lost braces
    69 | the initial values for parameters in models. For example, inits<-function(){list(alpha=0,beta=0,c=0,var1=0.5,r=1,lamda=0.01)}.
       |                                                                            ^
Maintainer: ‘Fayette Klaassen <klaassen.fayette@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fayette",
                    family = "Klaassen",
                    role = c("aut", "cre"),
                    email = "klaassen.fayette@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_cutoff.R’
checkRd: (-1) DE.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DE.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) DEzs.Rd:61: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Margarita Marin <mmarinj@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Margarita",
                      family = "Marin",
                      role = c("aut", "cre"),
                      email = "mmarinj@unal.edu.co"),
               person(given = "Edilberto",
                      family = "Cepeda-Cuervo.",
                      role = "aut"))
as necessary.
Maintainer: ‘Matt Moores <mmoores@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arthur White <arwhite@tcd.ie>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jingyu He <jingyuhe@cityu.edu.hk>’

The Description field contains
  priors, Hahn, He and Lopes (2018) <arXiv:1806.05738>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
checkRd: (-1) predict.bayeslm.fit.Rd:18: Lost braces; missing escapes or markup?
    18 |   \item{X         }{ If call \code{bayeslm} with matrices input \code{x} and {y} but not formula, pass new matrix to predict here. See example for details.}
       |                                                                              ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  hs_gibbs.Rd: summary.mcmc
  summary.bayeslm.fit.Rd: summary.mcmc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  LN_hierarchical.Rd: lmer, mcmc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jesse Windle <jesse.windle@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Edwin Javier Castillo Carreño <edjcastilloca@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Edwin", "Javier", "Castillo"),
                      family = "Carreño",
                      role = c("aut", "cre"),
                      email = "edjcastilloca@unal.edu.co"),
               person(given = c("Edilberto", "Cepeda"),
                      family = "Cuervo",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
plot_top_k 4.215  0.031   5.246
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  convolve.Rd: funnel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Luiz Fernando Figueiredo <labmapackage@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Laboratorio", "de", "Matematica"),
                      family = "Aplicada",
                      role = "aut",
                      comment = "IM/UFRJ"),
               person(given = c("Luiz", "Fernando"),
                      family = "Figueiredo",
                      role = "cre",
                      email = "labmapackage@gmail.com"))
as necessary.
Maintainer: ‘Joshua Cullen <joshcullen10@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) insert_NAs.Rd:22: Lost braces; missing escapes or markup?
    22 | A data frame where new rows have been inserted to regularize the \code{date} column. This results in values provided for \code{id}, \code{date}, and {dt} while inserting NAs for all other columns. Additionally, observations with duplicate date-times are removed.
       |                                                                                                                                                      ^
Maintainer: ‘Peter Rossi <perossichi@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Rossi",
                    role = c("aut", "cre"),
                    email = "perossichi@gmail.com")
as necessary.
Maintainer: ‘Erik Thorsén <erik.thorsen@math.su.se>’

The Description field contains
  (<arXiv:2104.02105>). The Metropolis-Hastings algorithm is designed
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
amend 5.883  0.377   9.525
Maintainer: ‘Han Yu <hyu9@buffalo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Han",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "hyu9@buffalo.edu"),
               person(given = "Rachael",
                      family = "Blair",
                      role = "aut"),
               person(given = "Janhavi",
                      family = "Moharil",
                      role = "aut"),
               person(given = "Andrew",
                      family = "Yan",
                      role = "aut"))
as necessary.
Maintainer: ‘Daniel Turek <danielturek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Turek",
                      role = c("aut", "cre"),
                      email = "danielturek@gmail.com"),
               person(given = "Mark",
                      family = "Risser",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1702.00434v2>). Bayesian inference is carried out using Markov
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Chengxue Zhong <czhong9106@gmail.com>’

The Description field contains
  (2021) <arXiv:2108.06568>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘helper_functions.R’
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
bayesplot-colors    4.758  0.015   6.490
MCMC-traces         4.232  0.044   5.117
PPC-test-statistics 4.180  0.018   5.317
MCMC-combos         3.529  0.415   5.031
PPD-intervals       3.826  0.014   5.557
bayesplot_theme_get 3.610  0.077   5.747
pp_check            3.497  0.067   5.181
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
binom_PRC_h 5.306  0.144   6.462
Maintainer: ‘Georg Hahn <ghahn@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Georg",
                      family = "Hahn",
                      role = c("aut", "cre"),
                      email = "ghahn@hsph.harvard.edu"),
               person(given = "Paul",
                      family = "Fearnhead",
                      role = "ctb"),
               person(given = c("Idris", "A."),
                      family = "Eckley",
                      role = "ctb"))
as necessary.
Maintainer: ‘Dries F. Benoit <Dries.Benoit@UGent.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dries", "F."),
                      family = "Benoit",
                      role = c("aut", "cre"),
                      email = "dries.benoit@ugent.be"),
               person(given = "Rahim",
                      family = "Al-Hamzawi",
                      role = "aut"),
               person(given = "Keming",
                      family = "Yu",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Van den Poel",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
bayesreg 0.403  0.048   5.573
Maintainer: ‘Andrew G Chapple <achapp@lsuhsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Andrew", "G"),
                    family = "Chapple",
                    role = c("aut", "cre"),
                    email = "achapp@lsuhsc.edu")
as necessary.
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
No news entries found.
checkRd: (-1) pulse_of_the_nation.Rd:10: Escaped LaTeX specials: \$
Maintainer: ‘Minsuk Shin <minsuk000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minsuk",
                      family = "Shin",
                      role = c("aut", "cre"),
                      email = "minsuk000@gmail.com"),
               person(given = "Ruoxuan",
                      family = "Tian",
                      role = "aut"))
as necessary.
Maintainer: ‘Jinhui Yang <james.yangjinhui@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jinhui",
                      family = "Yang",
                      role = c("aut", "cre"),
                      email = "james.yangjinhui@gmail.com"),
               person(given = "Haitao",
                      family = "Chu",
                      role = "aut"),
               person(given = "Lifeng",
                      family = "Lin",
                      role = "aut"))
as necessary.
Maintainer: ‘Jean-Michel Marin <jean-michel.marin@umontpellier.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Michel",
                      family = "Marin",
                      role = c("aut", "cre"),
                      email = "jean-michel.marin@umontpellier.fr"),
               person(given = c("Christian", "P."),
                      family = "Robert",
                      role = "aut"))
as necessary.
'library' or 'require' call not declared from: ‘mvtnorm’
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
pmmh 5.159  0.063   5.918
Maintainer: ‘Stephanie van der Pas <s.l.vanderpas@amsterdamumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephanie",
                      family = "van der Pas",
                      role = c("aut", "cre"),
                      email = "s.l.vanderpas@amsterdamumc.nl"),
               person(given = "Ismael",
                      family = "Castillo",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:2005.02889>. In that paper it is also shown that the credible
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
bayesfactor 7.323  0.585  12.084
Maintainer: ‘Riko Kelter <riko.kelter@uni-siegen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Riko",
                    family = "Kelter",
                    role = c("aut", "cre"),
                    email = "riko.kelter@uni-siegen.de")
as necessary.

The Description field contains
  details about the Gibbs sampler see Kelter (2019) <arXiv:1906.07524>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexia",
                    family = "Jolicoeur-Martineau",
                    role = c("aut", "cre"),
                    email = "alexia.jolicoeur-martineau@mail.mcgill.ca")
as necessary.
checkRd: (-1) BayesTreePrior.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) BayesTreePrior.Rd:41: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Robert McCulloch <robert.e.mcculloch@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hugh",
                      family = "Chipman",
                      role = "aut",
                      email = "hugh.chipman@gmail.com"),
               person(given = "Robert",
                      family = "McCulloch",
                      role = c("aut", "cre"),
                      email = "robert.e.mcculloch@gmail.com"))
as necessary.
Maintainer: ‘Inga Schwabe <bayestwin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Inga",
                    family = "Schwabe",
                    role = c("aut", "cre"),
                    email = "bayestwin@gmail.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/ingaschwabe/BayesTwin
which should likely be
  https://github.com/ingaschwabe/BayesTwin/issues
instead.
Maintainer: ‘Viet-Phuong La <lvphuong@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘graphs.Rd’:
    \keyword{directed acyclic graphs, bayesvl}
  File ‘plots.Rd’:
    \keyword{directed acyclic graphs, bayesvl, bayesvl [TRUNCATED]
  File ‘stan.Rd’:
    \keyword{directed acyclic graphs, bayesvl}
  File ‘vl2bn.Rd’:
    \keyword{directed acyclic graphs, bayesvl, bayesvl [TRUNCATED]
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  stan.Rd: stan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alexander C. Murph <murph290@gmail.com>’

The Description field contains
  al. (2023) <arXiv:2310.02940>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Author field differs from that derived from Authors@R
  Author:    ‘Alexander C. Murph [aut, cre] (<https://orcid.org/0000-0001-7170-867X>), Reza Mohammadi [ctb, cph] (<https://orcid.org/0000-0001-9538-0648>), Alex Lenkoski [ctb, cph] (<https://orcid.org/0000-0002-6664-0292>), Andrew Johnson [ctb] (andrew.johnson@arjohnsonau.com)’
  Authors@R: ‘Alexander C. Murph [aut, cre] (ORCID: <https://orcid.org/0000-0001-7170-867X>), Reza Mohammadi [ctb, cph] (ORCID: <https://orcid.org/0000-0001-9538-0648>), Alex Lenkoski [ctb, cph] (ORCID: <https://orcid.org/0000-0002-6664-0292>), Andrew Johnson [ctb] (email: andrew.johnson@arjohnsonau.com)’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AgeC14_Computation.Rd: rjags
  AgeS_Computation.Rd: rjags, runjags
  Age_Computation.Rd: jags.model, rjags
  Age_OSLC14.Rd: rjags, runjags
  Generate_DataFile-deprecated.Rd: read_BIN2R, Luminescence
  Generate_DataFile_MG-deprecated.Rd: read_BIN2R
  Model_Age.Rd: rjags
  Model_AgeC14.Rd: rjags
  Model_AgeS.Rd: rjags
  Model_Palaeodose.Rd: rjags
  Palaeodose_Computation.Rd: jags.model, rjags
  create_DataFile.Rd: RLum.Analysis-class
  plot_MCMC.Rd: rjags
  plot_Scatterplots.Rd: rjags
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Maintainer: ‘Edward M.H. Lin <ed.mhlin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Cathy", "W.", "S."),
                      family = "Chen",
                      role = "aut"),
               person(given = c("Edward", "M.H."),
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "ed.mhlin@gmail.com"),
               person(given = "F.C.",
                      family = "Liu",
                      role = "aut"),
               person(given = "Richard",
                      family = "Gerlach",
                      role = "aut"))
as necessary.
Maintainer: ‘Erik W Leppo <Erik.Leppo@tetratech.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rebecca",
                      family = "Murphy",
                      role = "aut"),
               person(given = "Elgin",
                      family = "Perry",
                      role = "aut"),
               person(given = "Jennifer",
                      family = "Keisman",
                      role = "aut"),
               person(given = "Jon",
                      family = "Harcum",
                      role = "aut"),
               person(given = c("Erik", "W"),
                      family = "Leppo",
                      role = c("aut", "cre"),
                      email = "erik.leppo@tetratech.com"))
as necessary.
Maintainer: ‘Valeriy Zakamulin <valeriz@uia.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Valeriy",
                    family = "Zakamulin",
                    role = c("aut", "cre"),
                    email = "valeriz@uia.no")
as necessary.
Maintainer: ‘Anton Gagin <av.gagin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Anton",
                      family = "Gagin",
                      role = c("aut", "cre"),
                      email = "av.gagin@gmail.com"),
               person(given = c("Igor", "Levin", "with", "contributions", "from", "Charles", "R.", "Hogg"),
                      family = "III",
                      role = "aut"))
as necessary.
checkRd: (-1) runUI.Rd:11: Lost braces
    11 | Runs a \bold{Shiny} application. This function normally does not return; interrupt bold{R} to stop the application (usually by pressing Ctrl+C or Esc).
       |                                                                                        ^
checkRd: (-1) getOperatingSystem.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getOperatingSystem.Rd:30: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Paul Gilbert <pgilbert.ttv9z@ncf.ca>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Vinicius Mayrink <vdinizm@gmail.com>’

The Description field contains
  <arXiv:2003.05157>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘boot_bw.R’ ‘boot_bw_estimate.R’ ‘post_strat_estimation.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  c3mtc.Rd: c3
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Wang Yudong <yudongw@u.nus.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wang",
                      family = "Yudong",
                      role = c("aut", "cre"),
                      email = "yudongw@u.nus.edu"),
               person(given = "Ye",
                      family = "Zhisheng",
                      role = "aut"),
               person(given = "Cao",
                      family = "Hongyuan",
                      role = "aut"))
as necessary.
Maintainer: ‘Longhai Li <longhai@math.usask.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Longhai",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "longhai@math.usask.ca")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
example 6.055  0.182   8.145
Found the following files/directories:
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_31_p_4026_nfsel_50_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_20_biascor_1.RData’
  ‘.fitbcbcsf_alpha1_mu_3_n_53_p_4026_nfsel_50_biascor_1.RData’
Maintainer: ‘Haoran Zhang <hzz0017@auburn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haoran",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "hzz0017@auburn.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
BayesT   4.633  0.075   6.002
plot.BCC 4.295  0.136   5.315
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mahdi",
                    family = "Teimouri",
                    role = c("aut", "cre"),
                    email = "teimouri@aut.ac.ir")
as necessary.
checkRd: (-1) goftype1.Rd:4: Lost braces
     4 | \description{The goodness-of-fit (GOF) measures consist of Anderson-Darling (\code{AD}) and Cram\'{e}er-von Misses (\code{CVM}) statistics for progressive type-I interval censoring scheme are given, respectively, by
       |                                                                                                   ^
Maintainer: ‘Ewoud De Troyer <ewoud.detroyer@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aregay",
                      family = "Mengsteab",
                      role = "aut"),
               person(given = "Martin",
                      family = "Otava",
                      role = "aut"),
               person(given = "Tatsiana",
                      family = "Khamiakova",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = c("aut", "cre"),
                      email = "ewoud.detroyer@uhasselt.be"))
as necessary.
Found the following files/directories:
  ‘fabiabreast.txt’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ceac_plot_graph.R’ ‘ceef_plot_graph.R’ ‘ceplane_plot_graph.R’
    ‘contour_graph.R’ ‘eib_plot_graph.R’ ‘evppi.default.R’
    ‘evppi_plot_ggplot.R’ ‘info_rank_graph.R’ ‘plot.bcea.R’
    ‘prep_ceplane_params.R’
Maintainer: ‘Denis Talbot <denis.talbot@fmed.ulaval.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Denis",
                      family = "Talbot",
                      role = c("aut", "cre"),
                      email = "denis.talbot@fmed.ulaval.ca"),
               person(given = "Genevieve",
                      family = "Lefebvre",
                      role = "aut"),
               person(given = "Juli",
                      family = "Atherton",
                      role = "aut"),
               person(given = "Yohann",
                      family = "Chiu.",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bcfraildv.Rd: bcfrailph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  shrgamsp.Rd: coxph
  simstdybcf.Rd: coxph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jared S. Murray <jared.murray@mccombs.utexas.edu>’

The Description field contains
  <arXiv:1309.1906>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Cristian Oliva-Aviles <coliva@colostate.edu>’

The Description field contains
  covariates. See Meyer et al. (2011) <doi/10.1080/10485252.2011.597852>
Please write DOIs as <doi:prefix/suffix>.
Maintainer: ‘Nicola Lunardon <nicola.lunardon@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nicola",
                      family = "Lunardon",
                      role = c("aut", "cre"),
                      email = "nicola.lunardon@unimib.it"),
               person(given = "Daniel",
                      family = "Scharfstein",
                      role = "aut",
                      email = "dscharf@jhu.edu"))
as necessary.
Maintainer: ‘J. Jack Lee <jjlee@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nan",
                      family = "Chen",
                      role = "aut"),
               person(given = c("J.", "Jack"),
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "jjlee@mdanderson.org"))
as necessary.
Maintainer: ‘Jiehuan Sun <jiehuan.sun@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiehuan",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "jiehuan.sun@gmail.com"),
               person(given = c("Jose", "D."),
                      family = "Herazo-Maya",
                      role = "aut"),
               person(given = "Naftali",
                      family = "Kaminski",
                      role = "aut"),
               person(given = "Hongyu",
                      family = "Zhao",
                      role = "aut"),
               person(given = c("Joshua", "L."),
                      family = "Warren,",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Eliezer Gurarie <egurarie@esf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Eliezer",
                    family = "Gurarie",
                    role = c("aut", "cre"),
                    email = "egurarie@esf.edu")
as necessary.
checkRd: (-1) WindowSweep.Rd:32: Lost braces
    32 | `code{\link{GetVT}}`.   Otherwise, any column (e.g. \code{"Depth"}) in the 
       |      ^
checkRd: (-1) WindowSweep.Rd:36: Lost braces
    36 | \code{T.mid}  from the output of the `code{\link{GetVT}}`.}
       |                                           ^
Maintainer: ‘Fanni Zhang <rstatpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fanni",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "rstatpackages@gmail.com")
as necessary.
Maintainer: ‘Duc-Khanh To  <toduc@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duc-Khanh",
                      family = "To",
                      role = c("aut", "cre"),
                      email = "toduc@stat.unipd.it"),
               person(given = c("with", "contributions", "from", "Monica"),
                      family = "Chiogna",
                      role = "aut"),
               person(given = "Gianfranco",
                      family = "Adimari",
                      role = "aut"))
as necessary.
Maintainer: ‘Jiehuan Sun <jiehuan.sun@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiehuan",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "jiehuan.sun@yale.edu"),
               person(given = c("Joshua", "L."),
                      family = "Warren",
                      role = "aut"),
               person(given = "Hongyu",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
BCSub 4.469  0.273   5.763
Maintainer: ‘Valentinian Mihai Lungu <valentinian.mihai@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ioannis",
                      family = "Papageorgiou",
                      role = "aut"),
               person(given = c("Valentinian", "Mihai"),
                      family = "Lungu",
                      role = c("aut", "cre"),
                      email = "valentinian.mihai@gmail.com"),
               person(given = "Ioannis",
                      family = "Kontoyiannis",
                      role = "aut"))
as necessary.

The Description field contains
  April 2022. Available at: <arXiv:2007.14900> [stat.ME], July 2020] and
  using Bayesian Context Trees' <arXiv:2203.04341> [stat.ME], March
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
checkRd: (-1) gene_s.Rd:17: Lost braces; missing escapes or markup?
    17 | giving the virus access to the cell and thus facilitating the COVID-19 disease. The gene sequence is mapped to the alphabet {0,1,2,3} via the obvious map A->0, C->1, G->2, T->3.
       |                                                                                                                             ^
checkRd: (-1) sars_cov_2.Rd:16: Lost braces; missing escapes or markup?
    16 | It consists of n = 29903 base pairs. The gene sequence is mapped to the alphabet {0,1,2,3} via the obvious map A->0, C->1, G->2, T->3.
       |                                                                                  ^
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

The Description field contains
  article (at <arXiv:0908.2062>) and Perry's 2009 PhD thesis (at
  <arXiv:0909.3052>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Guzman Santafe <guzman.santafe@unavarra.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guzman",
                      family = "Santafe",
                      role = c("aut", "cre"),
                      email = "guzman.santafe@unavarra.es"),
               person(given = "Borja",
                      family = "Calvo",
                      role = "aut"),
               person(given = "Aritz",
                      family = "Perez",
                      role = "aut"),
               person(given = c("Jose", "A."),
                      family = "Lozano",
                      role = "aut"))
as necessary.
checkRd: (-1) bde.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) bde.Rd:56: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Collin Nolte <collin-nolte@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Collin",
                      family = "Nolte",
                      role = c("aut", "cre"),
                      email = "collin-nolte@uiowa.edu"),
               person(given = "Michael",
                      family = "Seedorff",
                      role = "aut"),
               person(given = "Jacob",
                      family = "Oleson",
                      role = "aut"),
               person(given = "Grant",
                      family = "Brown",
                      role = "aut"),
               person(given = "Joseph",
                      family = "Cavanaugh",
                      role = "aut"),
               person(given = "Bob",
                      family = "McMurray",
                      role = "aut"))
as necessary.
Maintainer: ‘Manuel Wiesenfarth <m.wiesenfarth@dkfz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Annette",
                      family = "Kopp-Schneider",
                      role = "aut"),
               person(given = "Manuel",
                      family = "Wiesenfarth",
                      role = c("aut", "cre"),
                      email = "m.wiesenfarth@dkfz.de"),
               person(given = "Ulrich",
                      family = "Abel",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>’

File 'R/bdpv-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Solvi Rognvaldsson <solviro@gmail.com>’

The Description field contains
  described in Hrafnkelsson et al. (2020) <arXiv:2010.04769>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘dump.txt’
Maintainer: ‘Terry Therneau <therneau.terry@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Terry",
                    family = "Therneau",
                    role = c("aut", "cre"),
                    email = "therneau.terry@mayo.edu")
as necessary.
Maintainer: ‘Hamed Haselimashhadi <hamedhaseli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hamed",
                    family = "Haselimashhadi",
                    role = c("aut", "cre"),
                    email = "hamedhaseli@gmail.com")
as necessary.
Maintainer: ‘Peter Kampstra <beanplot@kampstra.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Kampstra",
                    role = c("aut", "cre"),
                    email = "beanplot@kampstra.net")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chenguang Wang <cwang68@jhmi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenguang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "cwang68@jhmi.edu"),
               person(given = "Ravi",
                      family = "Varadhan",
                      role = "aut"),
               person(given = c("Trustees", "of", "Columbia"),
                      family = "University",
                      role = "cph",
                      comment = "tools/make_cpp.R, R/stanmodels.R"))
as necessary.
Maintainer: ‘Panagiotis Papastamoulis <papapast@yahoo.gr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Panagiotis",
                    family = "Papastamoulis",
                    role = c("aut", "cre"),
                    email = "papapast@yahoo.gr")
as necessary.

The Description field contains
  Papastamoulis et al (2017) <arXiv:1709.06111> for a detailed
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following files/directories:
  ‘beast_plot_toy.pdf’
Maintainer: ‘Gideon Bradburd <bradburd@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gideon",
                    family = "Bradburd",
                    role = c("aut", "cre"),
                    email = "bradburd@umich.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘BeeBDCQuery.Rd’ ‘continentOutlieRs.Rd’ ‘countryOutlieRs.Rd’
    ‘harmoniseR.Rd’
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
jbd_Ctrans_chunker 4.614  0.213   5.820
continentOutlieRs  4.020  0.091   5.609
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_contrast.R’ ‘apply_contrast.Rd’ ‘average_predictions.Rd’
    ‘estimate_varcov.R’ ‘estimate_varcov.Rd’ ‘get_marginal_effect.R’
    ‘get_marginal_effect.Rd’ ‘predict_counterfactuals.R’
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
ppc.beeSurvValidation 8.081  0.091   8.646
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘fitting.R’
Maintainer: ‘Peter Thuresson <jpeter.thuresson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Thuresson",
                    role = c("aut", "cre"),
                    email = "jpeter.thuresson@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CIBER.Rd: ggplot2, biAxisDiamondPlot, diamondPlot, gtable
  determinantStructure.Rd: data.tree
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
toy_activity_data 6.078  0.097   4.933
Maintainer: ‘Jakub Nowosad <nowosad.jakub@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Valentin Thorey <valentin@dreem.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dylan",
                      family = "Heirstraeten",
                      role = "aut"),
               person(given = "Valentin",
                      family = "Thorey",
                      role = "cre",
                      email = "valentin@dreem.com"))
as necessary.
Maintainer: ‘Carlos Cinelli <carloscinelli@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Cinelli",
                    role = c("aut", "cre"),
                    email = "carloscinelli@hotmail.com")
as necessary.
Maintainer: ‘Vitor Hugo Moreau <vitorhmc@ufba.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vitor", "Hugo"),
                    family = "Moreau",
                    role = c("aut", "cre"),
                    email = "vitorhmc@ufba.br")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  generate_model_data.Rd: tibble
  kit_summary_table.Rd: stanfit
  plot_kit_use.Rd: stanfit, ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Grace Chiu <bentcable@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Grace",
                      family = "Chiu",
                      role = c("aut", "cre"),
                      email = "bentcable@gmail.com"),
               person(given = c("Virginia", "Institute", "of", "Marine"),
                      family = "Science",
                      role = "aut"),
               person(given = c("William", "&", "Mary", "PO", "Box"),
                      family = "1346",
                      role = "aut"),
               person(given = "Gloucester",
                      family = "Point",
                      role = "aut"),
               person(given = "VA",
                      family = "23062",
                      role = "aut"),
               person(family = "USA",
                      role = "aut"))
as necessary.
checkRd: (-1) sockeye.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) sockeye.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stagnant.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) stagnant.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hill.Rd:39: Lost braces; missing escapes or markup?
    39 | \code{a} in {0, 1, 2} (see details))}
       |             ^
checkRd: (-1) read_ambi.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_ambi.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_iti.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_taxa.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read_twn.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_twn.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_twn.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) read_twn.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kyun-Seop Bae <k@acr.kr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kyun-Seop",
                    family = "Bae",
                    role = c("aut", "cre"),
                    email = "k@acr.kr")
as necessary.
Maintainer: ‘Alberto Caimo <alberto.caimo1@ucd.ie>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alberto",
                      family = "Caimo",
                      role = c("aut", "cre"),
                      email = "alberto.caimo1@ucd.ie"),
               person(given = "Lampros",
                      family = "Bouranis",
                      role = "aut"),
               person(given = "Robert",
                      family = "Krause",
                      role = "ctb"))
as necessary.
Maintainer: ‘Berry Boessenkool <berry-b@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Berry",
                    family = "Boessenkool",
                    role = c("aut", "cre"),
                    email = "berry-b@gmx.de")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/brry/berryFunctions
which should likely be
  https://github.com/brry/berryFunctions/issues
instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  l2array.Rd: abind
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
bes_g_gao 4.991  0.109   7.947
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
bess 4.579  0.084   6.117
Maintainer: ‘Yuanhao Lai <ylai72@uwo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "A.I.",
                      family = "McLeod",
                      role = "aut"),
               person(given = "Changjiang",
                      family = "Xu",
                      role = "aut"),
               person(given = "Yuanhao",
                      family = "Lai",
                      role = c("aut", "cre"),
                      email = "ylai72@uwo.ca"))
as necessary.
Maintainer: ‘Jack Kuipers <jack.kuipers@bsse.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jack",
                      family = "Kuipers",
                      role = c("aut", "cre"),
                      email = "jack.kuipers@bsse.ethz.ch"),
               person(given = "Giusi",
                      family = "Moffa",
                      role = "aut"))
as necessary.
Maintainer: ‘Beaulac Cedric <cedric@utstat.toronto.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  Rosentahl (2019) <arXiv:1804.10168>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
VI         4.341  0.000   5.816
FPredict   4.320  0.004   5.326
BaggedBEST 3.671  0.015   5.048
Specified C++11: please drop specification unless essential
checkRd: (-1) gen.data.Rd:42: Lost braces
    42 | code{cortype = 2} denotes the constant structure, where the \eqn{(i,j)} entry of covariance
       |     ^
Maintainer: ‘Haiming Zhou <haiming2019@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Telmo M Silva Filho <tmfilho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Telmo", "M", "Silva"),
                      family = "Filho",
                      role = c("aut", "cre"),
                      email = "tmfilho@gmail.com"),
               person(given = "Meelis",
                      family = "Kull",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
beta_kr 0.975  0.051   7.484
Maintainer: ‘Haakon Eidem Haakstad <h.e.haakstad@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Haakon", "Eidem"),
                    family = "Haakstad",
                    role = c("aut", "cre"),
                    email = "h.e.haakstad@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  functional.betapart.core.Rd: convhulln
  functional.betapart.core.pairwise.Rd: convhulln
  inter_geom.Rd: intersectn
  qhull.opt.Rd: convhulln
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
betapower 4.632  0.134   5.477
Maintainer: ‘Luis Cayuela <luis.cayuela@urjc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Cayuela",
                      role = c("aut", "cre"),
                      email = "luis.cayuela@urjc.es"),
               person(given = "Marcelino",
                      family = "de la Cruz",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘adonis_pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
  File ‘cca_pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
  File ‘mantel_pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
  File ‘pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
  File ‘rda_pertables.Rd’:
    http://dx.doi.org/10.1111/j.1600-0587.2009.05899.x
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
pertables 0.011   0.01   5.241
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
betamix      5.881  0.135   8.483
betar_family 5.094  0.208   5.932
909c909
< This is mgcv 1.9-3. For overview type 'help("mgcv-package")'.
---
> This is mgcv 1.9-1. For overview type 'help("mgcv-package")'.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
lav_betaselect 4.38  0.034   5.194
Maintainer: ‘Michele De Meo <micheledemeo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michele",
                    family = "De Meo",
                    role = c("aut", "cre"),
                    email = "micheledemeo@gmail.com")
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘Qingyuan Zhao <qyzhao@statslab.cam.ac.uk>’

The Description field contains
  <arXiv:2004.07743>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) BETSsearch.Rd:56: Lost braces
    56 |        \item{To exclude whole expressions from the search, surround them with code{' '} and insert a \code{~} before each of them.
       |                                                                                   ^
checkRd: (-1) dummy.Rd:23: Lost braces; missing escapes or markup?
    23 | \item{date}{a \code{list}. The periods for which the dummy must be set to one. Periods must be represented as {integer vectors}, as described for \code{start} and \code{end}.}
       |                                                                                                               ^
checkRd: (-1) dummy.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{from}{An \code{integer vector} The starting period of a sequence of perids for which the dummy must be set to one. Periods must be represented as {integer vectors}, as described for \code{start} and \code{end}.}
       |                                                                                                                                                         ^
checkRd: (-1) dummy.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{to}{The ending period of a sequence of perids for which the dummy must be set to one. Periods must be represented as {integer vectors}, as described for \code{start} and \code{end}.}
       |                                                                                                                            ^
Maintainer: ‘Chris Aberson <cla18@humboldt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Aberson",
                    role = c("aut", "cre"),
                    email = "cla18@humboldt.edu")
as necessary.
Maintainer: ‘Daniel Greene <dg333@cam.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Greene",
                      role = c("aut", "cre"),
                      email = "dg333@cam.ac.uk"),
               person(given = "Sylvia",
                      family = "Richardson",
                      role = "aut"),
               person(given = "Ernest",
                      family = "Turro",
                      role = "aut"))
as necessary.
Maintainer: ‘Blondeau Da Silva Stephane <Stephane.Blondeau-Da-Silva@ac-limoges.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Blondeau", "Da", "Silva"),
                    family = "Stephane",
                    role = c("aut", "cre"),
                    email = "stephane.blondeau-da-silva@ac-limoges.fr")
as necessary.
Maintainer: ‘Aaron Olsen <aarolsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Olsen",
                    role = c("aut", "cre"),
                    email = "aarolsen@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
bfi           6.033  0.008   6.872
surv.simulate 5.703  0.007   7.006
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bfsMaps-package.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CombinePolygons.Rd: st_union
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bfs_get_catalog_data.R’ ‘bfs_get_catalog_tables.R’
Maintainer: ‘Giampiero Marra <giampiero.marra@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giampiero",
                      family = "Marra",
                      role = c("aut", "cre"),
                      email = "giampiero.marra@ucl.ac.uk"),
               person(given = "Raffaella",
                      family = "Calabrese",
                      role = "aut"),
               person(given = c("Silvia", "Angela"),
                      family = "Osmetti",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Author field differs from that derived from Authors@R
  Author:    ‘S. Mason Garrison [aut, cre] (<https://orcid.org/0000-0002-4804-6003>), Michael D. Hunter [aut] (<https://orcid.org/0000-0002-3651-6709>), Xuanyu Lyu [aut] (<https://orcid.org/0000-0002-2841-5529>), Rachel N. Good [ctb], Jonathan D. Trattner [aut] (<https://orcid.org/0000-0002-1097-7603>, https://www.jdtrat.com/), S. Alexandra Burt [aut] (<https://orcid.org/0000-0001-5538-7431>)’
  Authors@R: ‘S. Mason Garrison [aut, cre] (ORCID: <https://orcid.org/0000-0002-4804-6003>), Michael D. Hunter [aut] (ORCID: <https://orcid.org/0000-0002-3651-6709>), Xuanyu Lyu [aut] (ORCID: <https://orcid.org/0000-0002-2841-5529>), Rachel N. Good [ctb], Jonathan D. Trattner [aut] (ORCID: <https://orcid.org/0000-0002-1097-7603>, url: https://www.jdtrat.com/), S. Alexandra Burt [aut] (ORCID: <https://orcid.org/0000-0001-5538-7431>)’
Maintainer: ‘Przemyslaw Biecek <Przemyslaw.Biecek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Przemyslaw", "Biecek", "\\&", "Ewa"),
                      family = "Szczurek",
                      role = "aut"),
               person(given = "Przemyslaw",
                      family = "Biecek",
                      role = "cre",
                      email = "Przemyslaw.Biecek@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) bgmm-package.Rd:23: Escaped LaTeX specials: \&
Maintainer: ‘Emilio Akira Morones Ishikawa <emiliomorones@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("L.", "E."),
                      family = "Nieto-Barajas",
                      role = "aut"),
               person(given = c("J.", "A.", "Garcia"),
                      family = "Bueno",
                      role = "aut"),
               person(given = c("E.A.", "Morones"),
                      family = "Ishikawa",
                      role = "aut"),
               person(given = "J.",
                      family = "Pliego",
                      role = "aut"),
               person(given = c("Emilio", "Akira", "Morones"),
                      family = "Ishikawa",
                      role = "cre",
                      email = "emiliomorones@gmail.com"))
as necessary.
Maintainer: ‘Yin Song <yinsong@uvic.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yin",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "yinsong@uvic.ca"),
               person(given = "Shufei",
                      family = "Ge",
                      role = "aut"),
               person(given = "Liangliang",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jiguo",
                      family = "Cao",
                      role = "aut"),
               person(given = "Keelin",
                      family = "Greenlaw",
                      role = "aut"),
               person(given = "Mary",
                      family = "Lesperance",
                      role = "aut"),
               person(given = c("Farouk", "S."),
                      family = "Nathoo",
                      role = "aut"))
as necessary.
checkRd: (-1) sp_bgsmtr.Rd:42: Lost braces; missing escapes or markup?
    42 | \item{c.star}{The threshold for computing posterior tail probabilities p_{ij} for Bayesian FDR as defined in Section 3.2 of  Song, Ge et al.(2019). If not specified the default is to set this threshold as the minimum posterior standard deviation, where the minimum is taken over all regression coefficients in the model.}
       |                                                                          ^
Author field differs from that derived from Authors@R
  Author:    ‘Pedro C. Brom [aut, cre, cph] (<https://orcid.org/0000-0002-1288-7695>, http://lattes.cnpq.br/0154064396756002), Cira E. G. Otiniano [aut, cph] (<https://orcid.org/0000-0002-5619-0478>, http://lattes.cnpq.br/0307717595727716), Roberto Vila [aut, cph] (<https://orcid.org/0000-0003-1073-0114>, http://lattes.cnpq.br/4978745622057574), Marcelo B. Pereira [aut, cph] (<https://orcid.org/0000-0002-1182-5193>, https://lattes.cnpq.br/9358366674842900)’
  Authors@R: ‘Pedro C. Brom [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-1288-7695>, Lattes: http://lattes.cnpq.br/0154064396756002), Cira E. G. Otiniano [aut, cph] (ORCID: <https://orcid.org/0000-0002-5619-0478>, Lattes: http://lattes.cnpq.br/0307717595727716), Roberto Vila [aut, cph] (ORCID: <https://orcid.org/0000-0003-1073-0114>, Lattes: http://lattes.cnpq.br/4978745622057574), Marcelo B. Pereira [aut, cph] (ORCID: <https://orcid.org/0000-0002-1182-5193>, Lattes: https://lattes.cnpq.br/9358366674842900)’
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
mlebgumbel 4.017   0.01   5.379
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
bgvar 5.661   0.05   6.885
Maintainer: ‘Kjetil B.Halvorsen <kjetil1001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ernesto",
                      family = "Barrios",
                      role = "aut"),
               person(given = "Kjetil",
                      family = "B.Halvorsen",
                      role = "cre",
                      email = "kjetil1001@gmail.com"))
as necessary.
checkRd: (-1) dotPlot.Rd:56: Escaped LaTeX specials: \&
Maintainer: ‘Stephan Wojciekowski <stephan.wojciekowski@boehringer-ingelheim.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Agner Fog <agner@agner.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Agner",
                    family = "Fog",
                    role = c("aut", "cre"),
                    email = "agner@agner.org")
as necessary.
Maintainer: ‘De Troyer Ewoud <ewoud.detroyer@uhasselt.be>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("De", "Troyer"),
                    family = "Ewoud",
                    role = c("aut", "cre"),
                    email = "ewoud.detroyer@uhasselt.be")
as necessary.
Maintainer: ‘Aurélien Goutsmedt <agoutsmedt@hotmail.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  detect_keys.Rd: read_rmd
  doi2bib.Rd: cr_cn
  reflist.Rd: write_rmd, render_rmd
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Mahdi Teimouri <teimouri@aut.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mahdi",
                    family = "Teimouri",
                    role = c("aut", "cre"),
                    email = "teimouri@aut.ac.ir")
as necessary.
checkRd: (-1) Jeffreysbs.Rd:17: Escaped LaTeX specials: \&
Maintainer: ‘Alexander F. Lapanowski <aflapan@gmail.com>’

The Description field contains
  <arXiv:2005.03858>.  Also includes methods for non-linear discriminant
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
tune_biclustermd 1.679  0.128   7.357
Maintainer: ‘Sebastian Kaiser <dr.sebastian.kaiser@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastian",
                      family = "Kaiser",
                      role = c("aut", "cre"),
                      email = "dr.sebastian.kaiser@gmail.com"),
               person(given = "Rodrigo",
                      family = "Santamaria",
                      role = "aut"),
               person(given = "Tatsiana",
                      family = "Khamiakova",
                      role = "aut"),
               person(given = "Martin",
                      family = "Sill",
                      role = "aut"),
               person(given = "Roberto",
                      family = "Theron",
                      role = "aut"),
               person(given = "Luis",
                      family = "Quintales",
                      role = "aut"),
               person(given = "Friedrich",
                      family = "Leisch",
                      role = "aut"),
               person(given = "Ewoud",
                      family = "De Troyer",
                      role = "aut"),
               person(given = "Sami",
                      family = "Leon.",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  diagnosticTest.Rd: additivityTests
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Polina Suter <polina.suter@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Polina",
                      family = "Suter",
                      role = c("aut", "cre"),
                      email = "polina.suter@gmail.com"),
               person(given = "Jack",
                      family = "Kuipers",
                      role = "aut"))
as necessary.
checkRd: (-1) BiDimRegression.Rd:29: Lost braces; missing escapes or markup?
    29 | \item \code{euclidean.df1, affine.df1} -  degrees of freedom of the nominator used for the F-statistics propagated by Nakaya (1997); df1 = p-2, with p is the number of elements  needed to calculate the referring model: p=4 for the Euclidean and p=6 for the affine geometry {Nakaya, 1997, Table 1}.
       |                                                                                                                                                                                                                                                                                  ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "BIFIE",
                      role = "aut"),
               person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Konrad",
                      family = "Oberwimmer",
                      role = "aut"))
as necessary.
Maintainer: ‘Wojciech Rosa <w.rosa@pollub.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wojciech",
                    family = "Rosa",
                    role = c("aut", "cre"),
                    email = "w.rosa@pollub.pl")
as necessary.
Maintainer: ‘Gabriel Martos <gmartos@utdt.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘entropy.fd.Rd’:
    \keyword{rkhs, Entropy}
Maintainer: ‘Steve Mack <Steven.Mack@ucsf.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Derek",
                      family = "Pappas",
                      role = "aut",
                      email = "djpappas75@gmail.com"),
               person(given = "Steve",
                      family = "Mack",
                      role = c("aut", "cre"),
                      email = "Steven.Mack@ucsf.edu"),
               person(given = "Jill",
                      family = "Hollenbach",
                      role = "aut",
                      email = "Jill.Hollenbach@ucsf.edu"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
add_neighbour 4.751  0.119   5.925
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
bigergm 4.777  0.116   5.878
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
Found the following calls to data() loading into the global environment:
File ‘biglm/R/bigglm.R’:
  data(reset = TRUE)
  data(reset = FALSE)
See section ‘Good practice’ in ‘?data’.
Maintainer: ‘Joan Garriga <jgarriga@ceab.csic.es>’

The Description field contains
  F. (2018), <arXiv:1812.09869>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++14: please drop specification unless essential
checkRd: (-1) bdm.ptsne.Rd:47: Lost braces; missing escapes or markup?
    47 | By default the algorithm is structured in \eqn{\sqrt{n}} epochs of \eqn{\sqrt{z}} iterations each, where \var{n} is the dataset size and \var{z} is the thread-size (\eqn{z=n*layers/threads}). The running time of the algorithm is then determined by \eqn{epochs*iters*t_i+ epochs*t_e} where \var{t_{i}} is the running time of a single iteration and \var{t_{e}} is the inter-epoch running time.
       |                                                                                                                                                                                                                                                                                                         ^
checkRd: (-1) bdm.ptsne.Rd:47: Lost braces; missing escapes or markup?
    47 | By default the algorithm is structured in \eqn{\sqrt{n}} epochs of \eqn{\sqrt{z}} iterations each, where \var{n} is the dataset size and \var{z} is the thread-size (\eqn{z=n*layers/threads}). The running time of the algorithm is then determined by \eqn{epochs*iters*t_i+ epochs*t_e} where \var{t_{i}} is the running time of a single iteration and \var{t_{e}} is the inter-epoch running time.
       |                                                                                                                                                                                                                                                                                                                                                                   ^
Maintainer: ‘Ruoqi Yu <ruoqiyu125@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ruoqi",
                    family = "Yu",
                    role = c("aut", "cre"),
                    email = "ruoqiyu125@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
check 3.546  0.203   5.532
Maintainer: ‘Cristian Pachón García <cc.pachon@gmail.com>’

The Description field contains
  proposed by Delicado P. and C. Pachón-García (2021) <arXiv:2007.11919>
  (2021) <arXiv:2007.11919> (original proposal).  - Fast MDS, proposed by
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Thomas Lumley <t.lumley@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Lumley",
                    role = c("aut", "cre"),
                    email = "t.lumley@auckland.ac.nz")
as necessary.
checkRd: (-1) pQF.Rd:30: Lost braces; missing escapes or markup?
    30 | When \code{M} is not square, a randomised estimator for the trace of \code{crossprod(M)^2} is used. This is the sample size. When \code{M} is of \code{"matrixfree"} and does not include the trace of {crossprod(M)} as a component, this sample size will also be used to compute that. See Hutchinson reference. }
       |                                                                                                                                                                                                        ^
Maintainer: ‘Chibisi Chima-Okereke <chibisi@active-analytics.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chibisi",
                    family = "Chima-Okereke",
                    role = c("aut", "cre"),
                    email = "chibisi@active-analytics.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DBI.Rd: DBIObject-class, DBIDriver-class, DBIConnection-class,
    DBIResult-class
  bigquery.Rd: DBIDriver-class, DBIConnection-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
snp_clumping 7.807  0.022   8.778
snp_autoSVD  7.320  0.085   8.338
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘bigsplines-package.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘bigssa.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘bigssg.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘bigssp.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘bigtps.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘makessa.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘makessg.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘makessp.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘ordspline.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigspline.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigssa.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigssg.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigssp.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.bigtps.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘predict.ordspline.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
  File ‘ssBasis.Rd’:
    http://dx.doi.org/10.3389/fams.2017.00015
Maintainer: ‘Aliasghar Tarkhan <atarkhan@uw.edu>’

The Description field contains
  <arXiv:2003.00116v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michael J. Kane <bigmemoryauthors@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "J."),
                      family = "Kane",
                      role = c("aut", "cre"),
                      email = "kaneplusplus@gmail.com"),
               person(given = c("John", "W."),
                      family = "Emerson",
                      role = "aut",
                      email = "jayemerson@gmail.com"))
as necessary.
Maintainer: ‘Chenguang Wang <cwang68@jhmi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chenguang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "cwang68@jhmi.edu"),
               person(given = "Chiung-Yu",
                      family = "Huang",
                      role = "aut"),
               person(given = "Mei-Cheng",
                      family = "Wang",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) VARXFit.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXFit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXLagCons.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) VARXLagCons.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘M. Helena Goncalves <mhgoncal@ualg.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("M.", "Helena"),
                      family = "Goncalves",
                      role = c("aut", "cre"),
                      email = "mhgoncal@ualg.pt"),
               person(given = c("M.", "Salome"),
                      family = "Cabral",
                      role = "aut"),
               person(given = "Adelchi",
                      family = "Azzalini",
                      role = "aut"),
               person(given = c("apart", "from", "a", "set", "of", "Fortran-77", "subroutines", "written", "by", "R."),
                      family = "Piessens",
                      role = "aut"),
               person(given = "E.",
                      family = "de Doncker",
                      role = "aut"),
               person(given = c("belonging", "to", "the", "suite"),
                      family = "\"Quadpack\".",
                      role = "aut"))
as necessary.
Maintainer: ‘Mikkel Freltoft Krogsholm <mikkel@56n.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mikkel", "Freltoft"),
                    family = "Krogsholm",
                    role = c("aut", "cre"),
                    email = "mikkel@56n.dk")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
MDL 3.931   0.02   6.545
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Mundus",
                      role = "aut"),
               person(given = "Christoph",
                      family = "Müssel",
                      role = "aut"),
               person(given = "Florian",
                      family = "Schmid",
                      role = "aut"),
               person(given = "Ludwig",
                      family = "Lausser",
                      role = "aut"),
               person(given = c("Tamara", "J."),
                      family = "Blätte",
                      role = "aut"),
               person(given = "Martin",
                      family = "Hopfensitz",
                      role = "aut"),
               person(given = c("Hans", "A."),
                      family = "Kestler",
                      role = "aut"),
               person(given = "Hans",
                      family = "Kestler",
                      role = "cre",
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
File ‘Binarize/libs/Binarize.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Navinkumar Nedunchezhian <navinkumar.nedunchezhian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Navinkumar",
                    family = "Nedunchezhian",
                    role = c("aut", "cre"),
                    email = "navinkumar.nedunchezhian@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
BinomialEMVS 6.498  0.509   7.742
Maintainer: ‘Chih-Li Sung <iamdfchile@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chih-Li",
                    family = "Sung",
                    role = c("aut", "cre"),
                    email = "iamdfchile@gmail.com")
as necessary.

The Description field contains
  can be seen in Sung et al (2017) <arXiv:1705.02511>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = c("aut", "cre"),
                      email = "edd@debian.org"),
               person(given = "Ista",
                      family = "Zahn",
                      role = "aut"),
               person(given = "Rob",
                      family = "Hyndman",
                      role = "aut"))
as necessary.
Maintainer: ‘Josué M. Polanco-Martínez <josue.m.polanco@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: josue.m.polanco@gmail.com
    From: man/BINCOR-package.Rd
  URI: josue.m.polanco@gmail.com
    From: man/bin_cor.Rd
  URI: josue.m.polanco@gmail.com
    From: man/ccf_ts.Rd
  URI: josue.m.polanco@gmail.com
    From: man/cor_ts.Rd
  URI: josue.m.polanco@gmail.com
    From: man/plot_ts.Rd
  URI: mvkorpel@iki.fi
    From: man/redfitMinls.Rd
  URI: mvkorpel@iki.fi
    From: man/redfitTauest.Rd
Found the following files/directories:
  ‘ccf_ccf_ID31_ID32_res.jpg’ ‘ccf_ccf_ID31_ID32_res.pdf’
  ‘output_ENSO_NHSST.tmp’ ‘plot_plot_ts_RAW_BIN_enso_sst.pdf’
  ‘plot_plot_ts_RAW_BIN_enso_sst01.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst02.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst03.png’
  ‘plot_plot_ts_RAW_BIN_enso_sst04.png’ ‘plot_ts_ACER_ABRUPT.pdf’
  ‘plot_ts_ACER_ABRUPT01.png’ ‘plot_ts_ACER_ABRUPT02.png’
  ‘plot_ts_ACER_ABRUPT03.png’ ‘plot_ts_ACER_ABRUPT04.png’
  ‘salida_ACER_ABRUPT.tmp’ ‘scaterplot_scatterplot_ENSO_SST.jpg’
  ‘scaterplot_scatterplot_ENSO_SST.pdf’
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sebastian",
                      family = "Gibb",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Maintainer: ‘Samuel V. Scarpino <s.scarpino@northeastern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Samuel", "V."),
                      family = "Scarpino",
                      role = c("aut", "cre"),
                      email = "s.scarpino@northeastern.edu"),
               person(given = "Paul",
                      family = "von Hippel",
                      role = "aut"),
               person(given = "Igor",
                      family = "Holas",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid file URI:
  URI: doi.org/10.1177/0081175015599807
    From: inst/CITATION
Maintainer: ‘Berkley Shands <rpackages@biorankings.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Terrence",
                      family = "Brooks",
                      role = "aut"),
               person(given = "Berkley",
                      family = "Shands",
                      role = c("aut", "cre"),
                      email = "rpackages@biorankings.com"),
               person(given = "Skye",
                      family = "Buckner-Petty",
                      role = "aut"),
               person(given = c("Patricio", "S."),
                      family = "La Rosa",
                      role = "aut"),
               person(given = "Elena",
                      family = "Deych",
                      role = "aut"),
               person(given = c("William", "D."),
                      family = "Shannon",
                      role = "aut"))
as necessary.
Maintainer: ‘Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>’

File 'R/binGroup-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Matt Nunes <nunesrpackages@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matt",
                    family = "Nunes",
                    role = c("aut", "cre"),
                    email = "nunesrpackages@gmail.com")
as necessary.
Maintainer: ‘Clarke van Steenderen <vsteenderen@gmail.com>’

The Description field contains
  <https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/1365-2745.12869>,
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
Maintainer: ‘Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frank",
                    family = "Schaarschmidt",
                    role = c("aut", "cre"),
                    email = "schaarschmidt@biostat.uni-hannover.de")
as necessary.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gul",
                      family = "Inan",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Sundar Dorai-Raj <sdorairaj@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sundar",
                    family = "Dorai-Raj",
                    role = c("aut", "cre"),
                    email = "sundar.dorai-raj@pdf.com")
as necessary.
checkRd: (-1) binom.confint.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:30-31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:32-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) binom.confint.Rd:45: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
binom.bayes 4.031  0.256    6.02
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Yue",
                      family = "Wang",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Ping Liu <ping.liu@unimelb.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Sergei Izrailev <sizrailev@jabiruventures.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sergei",
                    family = "Izrailev",
                    role = c("aut", "cre"),
                    email = "sizrailev@jabiruventures.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
BinSegBstrap 6.254  0.012   8.116
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Toby", "Dylan"),
                    family = "Hocking",
                    role = c("aut", "cre"),
                    email = "toby.hocking@r-project.org")
as necessary.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jenn",
                      family = "Kirk",
                      role = "aut"),
               person(given = c("Michael", "P."),
                      family = "Fay",
                      role = c("aut", "cre"),
                      email = "mfay@niaid.nih.gov"))
as necessary.
Maintainer: ‘Dave Hunter <dhunter@westmont.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "J."),
                      family = "Hunter",
                      role = "aut"),
               person(given = "McKalie",
                      family = "Drown",
                      role = "aut"),
               person(given = "Dave",
                      family = "Hunter",
                      role = "cre",
                      email = "dhunter@westmont.edu"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
print_outputs 3.891  0.037   5.643
plot_outputs  3.704  0.007   5.870
Maintainer: ‘Yingjie Feng <fengyingjiepku@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matias", "D."),
                      family = "Cattaneo",
                      role = "aut"),
               person(given = c("Richard", "K."),
                      family = "Crump",
                      role = "aut"),
               person(given = c("Max", "H."),
                      family = "Farrell",
                      role = "aut"),
               person(given = "Yingjie",
                      family = "Feng",
                      role = c("aut", "cre"),
                      email = "fengyingjiepku@gmail.com"))
as necessary.
Maintainer: ‘Chapman Siu <chpmn.siu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chapman",
                    family = "Siu",
                    role = c("aut", "cre"),
                    email = "chpmn.siu@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  read_audio.Rd: Wave
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bbassets.R’
Maintainer: ‘Roberto Serrano-Notivoli <roberto.serrano@unizar.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Roberto",
                    family = "Serrano-Notivoli",
                    role = c("aut", "cre"),
                    email = "roberto.serrano@unizar.es")
as necessary.
Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcelo",
                    family = "Ponce",
                    role = c("aut", "cre"),
                    email = "m.ponce@utoronto.ca")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Federico Calboli <f.calboli@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alessio",
                      family = "Boattini",
                      role = "aut"),
               person(given = c("Federico", "C.", "F.", "Calboli;", "Vincente", "Canto", "Cassola", "together", "with", "Martin", "Maechler", "authored", "the", "function"),
                      family = "mtx.exp.",
                      role = "aut"),
               person(given = "Federico",
                      family = "Calboli",
                      role = "cre",
                      email = "f.calboli@gmail.com"))
as necessary.
Maintainer: ‘Alfredo Hernández <aldomann.designs@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bilat.Rd: intersect.owin
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) calc_ed.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) calc_pi.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) calc_si.Rd:14: Lost braces; missing escapes or markup?
    14 | of groups or less than \code{a}. Both \code{a} and {b} must have the the same 
       |                                                    ^
checkRd: (-1) cluster_reg_exp.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) cluster_reg_exp.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Lester L. Yuan <yuan.lester@epa.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lester", "L."),
                    family = "Yuan",
                    role = c("aut", "cre"),
                    email = "yuan.lester@epa.gov")
as necessary.
Maintainer: ‘Zachary Colburn <zcolburn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zachary",
                    family = "Colburn",
                    role = c("aut", "cre"),
                    email = "zcolburn@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
bm_Tuning        5.378  0.332   7.683
BIOMOD_RangeSize 4.819  0.070   5.707
Maintainer: ‘Giorgio Valentini<valentini@di.unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giorgio",
                      family = "Valentini",
                      role = c("aut", "cre"),
                      email = "valentini@di.unimi.it"),
               person(given = c("Matteo", "Re", "--", "Universita'", "degli", "Studi", "di"),
                      family = "Milano",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
plot_enrichment_summaries 4.905  0.152   5.079
Maintainer: ‘Paula Saavedra-Nieves <paula.saavedra@usc.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Saavedra-Nieves",
                      role = "aut"),
               person(given = "Paula",
                      family = "Saavedra-Nieves",
                      role = c("aut", "cre"),
                      email = "paula.saavedra@usc.es"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
plot.scan 6.672  0.336    9.13
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
hclu_hierarclust 4.328  0.081   5.044
Maintainer: ‘Piyal Karunarathne <piyalkarumail@yahoo.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marie Chabbert <marie.chabbert@univ-angers.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Julien", "Pele", "with", "Jean-Michel"),
                      family = "Becu",
                      role = "aut"),
               person(given = c("Rym", "Ben"),
                      family = "Boubaker",
                      role = "aut"),
               person(given = "Herve",
                      family = "Abdi",
                      role = "aut"),
               person(given = "Marie",
                      family = "Chabbert",
                      role = c("aut", "cre"),
                      email = "marie.chabbert@univ-angers.fr"))
as necessary.
checkRd: (-1) mmds.2D.multi.Rd:118: Lost braces
   118 |   a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
       |                                                                                                                                                                              ^
checkRd: (-1) mmds.2D.plot.Rd:134: Lost braces
   134 |   a numeric value in inches indicating the height of graph outfile. Default differs by outfile.type. The resolution for tiff and png figures is 150 dpi. See \code{pdf}, code{tiff}, \code{png}, \code{postscript}.
       |                                                                                                                                                                              ^
Maintainer: ‘Francois Keck <francois.keck@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Antonio Guerrero <jaguerrero@correo.uaa.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "J.A.",
                      family = "Guerrero",
                      role = "aut"),
               person(given = "J.E.",
                      family = "Macias-Diaz",
                      role = "aut"),
               person(given = "Antonio",
                      family = "Guerrero",
                      role = "cre",
                      email = "jaguerrero@correo.uaa.mx"))
as necessary.
Maintainer: ‘Stefan Michiels <stefan.michiels@gustaveroussy.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Nils",
                      family = "Ternes",
                      role = "aut"),
               person(given = "Federico",
                      family = "Rotolo",
                      role = "aut"),
               person(given = "Stefan",
                      family = "Michiels",
                      role = c("aut", "cre"),
                      email = "stefan.michiels@gustaveroussy.fr"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘poisson.ci.R’
Maintainer: ‘Rob Knell <r.knell@qmul.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rob",
                    family = "Knell",
                    role = c("aut", "cre"),
                    email = "r.knell@qmul.ac.uk")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
'library' or 'require' calls not declared from:
  ‘GGally’ ‘Hmisc’ ‘MASS’ ‘OneTwoSamples’ ‘TeachingDemos’ ‘agricolae’
  ‘e1071’ ‘gdata’ ‘granova’ ‘granovaGG’ ‘gridExtra’ ‘hcci’ ‘lattice’
  ‘lmPerm’ ‘lmtest’ ‘multcomp’ ‘multcompView’ ‘plyr’ ‘qcc’ ‘reshape’
  ‘sandwich’ ‘scales’ ‘vcd’ ‘xlsx’
Maintainer: ‘Dr Rob Briers <r.briers@napier.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dr", "Rob"),
                    family = "Briers",
                    role = c("aut", "cre"),
                    email = "r.briers@napier.ac.uk")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tim Hulsen <thulsen@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Michael Seo <swj8874@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘PCAbiplot_Helper.R’ ‘TDAbiplot.R’ ‘TDAbiplot.Rd’
    ‘TDAbiplot_helper.R’ ‘insertAxDeets.R’ ‘insertDataTable.R’
Maintainer: ‘Ana Belen Nieto Librero <ananieto@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "Belen", "Nieto"),
                      family = "Librero",
                      role = c("aut", "cre"),
                      email = "ananieto@usal.es"),
               person(given = "Adelaide",
                      family = "Freitas",
                      role = "aut",
                      email = "Adelaide@ua.pt"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘AoD.Rd’ ‘AoD.biplot.Rd’ ‘CA.Rd’ ‘CA.biplot.Rd’ ‘CLPs.Rd’ ‘CVA.Rd’
    ‘CVA.biplot.Rd’ ‘PCA.Rd’ ‘PCA.biplot.Rd’ ‘PCO.Rd’ ‘PCO.biplot.Rd’
    ‘alpha.bags.Rd’ ‘axes.Rd’ ‘axes_coordinates.Rd’ ‘biplot.R’
    ‘biplot.Rd’ ‘classification.Rd’ ‘classify.Rd’ ‘density1D.Rd’
    ‘density2D.Rd’ ‘ellipses.Rd’ ‘fit.measures.Rd’ ‘interpolate.Rd’
    ‘legend.type.Rd’ ‘means.Rd’ ‘newaxes.Rd’ ‘newsamples.Rd’
    ‘plot.biplot.Rd’ ‘prediction.Rd’ ‘print.biplot.Rd’ ‘reflect.Rd’
    ‘regress.Rd’ ‘regress.biplot.Rd’ ‘rotate.Rd’ ‘samples.Rd’
    ‘summary.biplot.Rd’ ‘translate_axes.R’ ‘translate_axes.Rd’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bisg.R’ ‘model_cat_dir.R’ ‘model_lm.R’ ‘stanmodels.R’
Maintainer: ‘Fraenzi Korner-Nievergelt <fraenzi.korner@vogelwarte.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fraenzi",
                      family = "Korner-Nievergelt",
                      role = c("aut", "cre"),
                      email = "fraenzi.korner@vogelwarte.ch"),
               person(given = "Rob",
                      family = "Robinson",
                      role = "aut"))
as necessary.
Maintainer: ‘Matthew A. Birk <matthewabirk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "A."),
                    family = "Birk",
                    role = c("aut", "cre"),
                    email = "matthewabirk@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bi_scale_color.Rd: geom_sf, scale_color_manual
  bi_scale_fill.Rd: geom_sf, scale_fill_manual
  bi_theme.Rd: ggplot2
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Winston Chang <winston@stdout.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Winston",
                    family = "Chang",
                    role = c("aut", "cre"),
                    email = "winston@stdout.org")
as necessary.

The Description field contains
  https://github.com/wch/bisectr for examples and test script templates.
Please enclose URLs in angle brackets (<...>).
No examples, no tests, no vignettes
Maintainer: ‘Mark Wappett <m.wappett@qub.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Wappett",
                    role = c("aut", "cre"),
                    email = "m.wappett@qub.ac.uk")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
moranbir.test 4.630  0.052   5.642
moranbi.mc    4.337  0.006   5.075
Maintainer: ‘Joshua Hewitt <joshua.hewitt@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joshua",
                    family = "Hewitt",
                    role = c("aut", "cre"),
                    email = "joshua.hewitt@duke.edu")
as necessary.

The Description field contains
  posterior inference.  See Hewitt and Hoeting (2019) <arXiv:1904.07270>
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Carine Legrand <c.legrand@dkfz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "C",
                      family = "Legrand",
                      role = "aut"),
               person(given = "Carine",
                      family = "Legrand",
                      role = "cre",
                      email = "c.legrand@dkfz.de"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  waic.cumhist.Rd: loo-package
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Hans Kestler <hans.kestler@uni-ulm.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefan",
                      family = "Mundus",
                      role = "aut"),
               person(given = "Christoph",
                      family = "Müssel",
                      role = "aut"),
               person(given = "Florian",
                      family = "Schmid",
                      role = "aut"),
               person(given = "Ludwig",
                      family = "Lausser",
                      role = "aut"),
               person(given = c("Tamara", "J."),
                      family = "Blätte",
                      role = "aut"),
               person(given = "Martin",
                      family = "Hopfensitz",
                      role = "aut"),
               person(given = c("Hans", "A."),
                      family = "Kestler",
                      role = "aut"),
               person(given = "Hans",
                      family = "Kestler",
                      role = "cre",
                      email = "hans.kestler@uni-ulm.de"))
as necessary.
File ‘BiTrinA/libs/BiTrinA.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bits_to_raw.Rd’ ‘bitstream-ints.R’ ‘bitstream-uints-exp-golomb.R’
Maintainer: ‘Jia-Han Shih <tommy355097@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jia-Han",
                      family = "Shih",
                      role = c("aut", "cre"),
                      email = "tommy355097@gmail.com"),
               person(given = "Wei",
                      family = "Lee",
                      role = "aut"))
as necessary.
Maintainer: ‘Alessandro Barbiero <alessandro.barbiero@unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alessandro",
                    family = "Barbiero",
                    role = c("aut", "cre"),
                    email = "alessandro.barbiero@unimi.it")
as necessary.
Maintainer: ‘Ricardo Puziol de Oliveira <rpuziol.oliveira@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ricardo", "Puziol"),
                      family = "de Oliveira",
                      role = c("aut", "cre"),
                      email = "rpuziol.oliveira@gmail.com"),
               person(given = c("Jorge", "Alberto"),
                      family = "Achcar",
                      role = "aut"))
as necessary.

The URL field contains the following bad parts:
  For
  more
  details
  see
  de
  Oliveira
  et.
  al
The URL field should be a list of URLs separated by commas or
whitespace.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
bivrp 4.387  0.221   6.434
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Jo Hardin <jo.hardin@pomona.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jo",
                    family = "Hardin",
                    role = c("aut", "cre"),
                    email = "jo.hardin@pomona.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bizicount.Rd: DHARMa
  zic.reg.Rd: DHARMa
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
extract.bizicount 4.733  0.148   5.601
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
BKTRRegressor              33.638  0.865  20.679
plot_hyperparams_dists     31.008  0.529  18.326
plot_hyperparams_traceplot 25.613  0.278  14.599
plot_y_estimates           21.516  0.132  12.785
plot_temporal_betas        18.731  0.070  11.061
plot_beta_dists            16.835  0.343   9.263
plot_covariates_beta_dists 13.157  0.062   7.099
Maintainer: ‘Jan Klaschka <klaschka@cs.cas.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jan",
                    family = "Klaschka",
                    role = c("aut", "cre"),
                    email = "klaschka@cs.cas.cz")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘binom.blaker.VHadj.limits.Rd’:
    http://dx.doi.org/10.1080/03610918.2014.911900
  File ‘binom.blaker.limits.Rd’:
    http://dx.doi.org/10.1080/03610918.2014.911900
  File ‘poisson.blaker.limits.Rd’:
    http://dx.doi.org/10.1080/03610918.2014.911900
Maintainer: ‘Bernhard Lehnert <bernhard.lehnert@uni-greifswald.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bernhard",
                    family = "Lehnert",
                    role = c("aut", "cre"),
                    email = "bernhard.lehnert@uni-greifswald.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘BlandAltmanLeh-package.Rd’:
    \keyword{ measurement precision, test-retest relia [TRUNCATED]
Maintainer: ‘Oswaldo Gressani <oswaldo_gressani@hotmail.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  coxlps.Rd: Surv, coxph
  curelps.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
blqr          7.116  0.008   7.796
ble_profile   6.221  0.042   7.137
expl_boundary 3.938  0.035   5.475
checkRd: (-1) posteriorFeasibility.Rd:25: Escaped LaTeX specials: \#
checkRd: (-1) sp500Returns.Rd:4: Escaped LaTeX specials: \&
Maintainer: ‘David J. Harris <DavHarris@UCDavis.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J."),
                    family = "Harris",
                    role = c("aut", "cre"),
                    email = "DavHarris@UCDavis.edu")
as necessary.

The Date field is not in ISO 8601 yyyy-mm-dd format.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
plot_Blend 3.433  0.058   5.227
checkRd: (-1) RLdata500.Rd:8: Lost braces
     8 | A data frame with five variables: \code{fname_c1},\code{lname_c1},  \code{by}, code{bm}, \code{bd}.
       |                                                                                    ^
checkRd: (-1) identity.RLdata500.Rd:15: Lost braces
    15 | format A vector that contains the code{id}
       |                                       ^
Maintainer: ‘Fraenzi Korner-Nievergelt <fraenzi.korner@oikostat.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fraenzi",
                      family = "Korner-Nievergelt",
                      role = c("aut", "cre"),
                      email = "fraenzi.korner@oikostat.ch"),
               person(given = "Tobias",
                      family = "Roth",
                      role = "aut"),
               person(given = "Stefanie",
                      family = "von Felten",
                      role = "aut"),
               person(given = "Jerome",
                      family = "Guelat",
                      role = "aut"),
               person(given = "Bettina",
                      family = "Almasi",
                      role = "aut"),
               person(given = "Pius",
                      family = "Korner-Nievergelt",
                      role = "aut"))
as necessary.
Maintainer: ‘S.Kovalchik <s.a.kovalchik@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "S.",
                      family = "Kovalchik",
                      role = "aut"),
               person(family = "S.Kovalchik",
                      role = "cre",
                      email = "s.a.kovalchik@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marie Perrot-Dockès <marie.perrocks@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "M.",
                      family = "Perrot-Dock\\`es",
                      role = "aut"),
               person(given = "C.",
                      family = "Lévy-Leduc",
                      role = "aut"),
               person(given = "Marie",
                      family = "Perrot-Dockès",
                      role = "cre",
                      email = "marie.perrocks@gmail.com"))
as necessary.

The Description field contains
  in the paper Perrot-Dockès et al. (2019) <arXiv:1806.10093>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Marvin N. Wright <cran@wrig.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Roman",
                      family = "Hornung",
                      role = "aut"),
               person(given = c("Marvin", "N."),
                      family = "Wright",
                      role = c("aut", "cre"),
                      email = "cran@wrig.de"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
plot.nppi 6.796  0.012   8.726
nppi      6.676  0.045   8.386
Maintainer: ‘Emanuele Cordano <emanuele.cordano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emanuele",
                    family = "Cordano",
                    role = c("aut", "cre"),
                    email = "emanuele.cordano@gmail.com")
as necessary.

The Description field contains
  (http://en.wikipedia.org/wiki/Block_matrix). The block matrix is here
Please enclose URLs in angle brackets (<...>).
Examples with CPU (user + system) or elapsed time > 5s
    user system elapsed
MBI 5.57  0.116   5.779
Maintainer: ‘Fabio Ashtar Telarico <telaricof@fdv.uni-lj.si>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jean-Benoist Leger <jbleger@hds.utc.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jean-Benoist",
                      family = "Leger",
                      role = c("aut", "cre"),
                      email = "jbleger@hds.utc.fr"),
               person(given = "Pierre",
                      family = "Barbillon",
                      role = "aut",
                      email = "pierre.barbillon@agroparistech.fr"),
               person(given = "Julien",
                      family = "Chiquet",
                      role = "aut",
                      email = "julien.chiquet@inrae.fr"))
as necessary.
Maintainer: ‘Greg Snow <538280@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Greg",
                    family = "Snow",
                    role = c("aut", "cre"),
                    email = "538280@gmail.com")
as necessary.
Maintainer: ‘Rodney Edmondson <rodney.edmondson@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("R.", "N."),
                      family = "Edmondson.",
                      role = "aut"),
               person(given = "Rodney",
                      family = "Edmondson",
                      role = "cre",
                      email = "rodney.edmondson@gmail.com"))
as necessary.
checkRd: (-1) durban.Rd:16: Lost braces; missing escapes or markup?
    16 | This data set was obtained from the durban.rowcol {agridat} example in package 'agridat' 
       |                                                   ^
checkRd: (-1) fraction.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fraction.Rd:31-32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fraction.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘assg2xBalance.R’
checkRd: (-1) estimate_density.Rd:25: Lost braces; missing escapes or markup?
    25 | evenly spaced points between \code{min} and {max}.
       |                                             ^
Maintainer: ‘Vahid Nassiri <vahid.nassiri@openanalytics.eu>’

The Description field contains
  <https://www.tandfonline.com/doi/full/10.1080/19466315.2019.1701546>).
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
Maintainer: ‘Daniel Brunner <daniel.brunner@hhu.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daniel",
                      family = "Brunner",
                      role = c("aut", "cre"),
                      email = "daniel.brunner@hhu.de",
                      comment = "aut"),
               person(given = "Constantin",
                      family = "Weiser",
                      role = "aut",
                      comment = "ctr"),
               person(given = "Andre",
                      family = "Romahn",
                      role = "aut",
                      comment = "ctr"))
as necessary.
Maintainer: ‘Furong Sun <furongs@vt.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Furong",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "furongs@vt.edu"),
               person(given = "Zhonggai",
                      family = "Li",
                      role = "aut",
                      email = "zli@bostonbiomedical.com"))
as necessary.
Maintainer: ‘Christoph Ritschel <christoph.ritschel@met.fu-berlin.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christoph",
                    family = "Ritschel",
                    role = c("aut", "cre"),
                    email = "christoph.ritschel@met.fu-berlin.de")
as necessary.
Maintainer: ‘Paulino Perez Rodriguez <perpdgo@colpos.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gustavo", "de", "los"),
                      family = "Campos",
                      role = "aut"),
               person(given = c("Paulino", "Perez"),
                      family = "Rodriguez,",
                      role = "aut"),
               person(given = c("Paulino", "Perez"),
                      family = "Rodriguez",
                      role = "cre",
                      email = "perpdgo@colpos.mx"))
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
'::' or ':::' imports not declared from:
  ‘abind’ ‘abjutils’ ‘bayesplot’ ‘devtools’ ‘dplyr’ ‘fs’ ‘furrr’
  ‘knitr’ ‘purrr’ ‘readr’ ‘stringr’ ‘tibble’ ‘tidyr’
'library' or 'require' calls not declared from:
  ‘future’ ‘tidyverse’
checkRd: (-1) bluebike.Rd:17: Lost braces
    17 | \item{\code{import_month_data}}\cr {Takes in numeric year/month values and imports data from \href{https://www.bluebikes.com/system-data}{Blue Bikes System Data} for the specified time}
       |                                    ^
checkRd: (-1) bluebike.Rd:18: Lost braces; missing escapes or markup?
    18 | \item{\code{station_distance}}\cr {Returns stations with distance in ascending order given the user's current location}
       |                                   ^
checkRd: (-1) bluebike.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{\code{station_radius}}\cr {Plots the position of the stations within walking distance (500 m), and present the basic information about the stations via leaflet}
       |                                 ^
checkRd: (-1) bluebike.Rd:20: Lost braces; missing escapes or markup?
    20 | \item{\code{trip_distance}}\cr {Computes the geographical distance between the start and end stations}
       |                                ^
checkRd: (-1) bluebike.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{\code{trip_history_sample}} \cr {A sample of 1000 trip data entries from February 2022}
       |                                       ^
checkRd: (-1) bluebike.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{\code{station_data}} \cr {A dataset that includes identification, position, and other basic information about bluebike stations}
       |                                ^
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
test_extrapolation 4.177  0.080   6.863
estimate_oc_stock  3.670  0.088   5.463
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Turchin <mturchin20@uchicago.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘GetModelPriorMatrix.Rd’:
    https://doi.org/10.1371/journal.pone.0065245
  File ‘GlobalLipids2013.GWASsnps.Rd’:
    https://doi.org/10.1038/ng.2797
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bmem.Rd: sem
  power.bmem.Rd: model.syntax
  power.curve.Rd: model.syntax
  summary.power.Rd: lavaan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
bmem         0.320  0.027   8.824
summary.bmem 0.178  0.016   8.964
Maintainer: ‘Zhiyong Zhang <zhiyongzhang@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhiyongzhang@nd.edu"),
               person(given = "Lijuan",
                      family = "Wang",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bmem.Rd: sem
  bmem.bs.Rd: sem
  bmem.em.Rd: sem
  bmem.em.boot.Rd: sem
  bmem.em.jack.Rd: sem
  bmem.list.Rd: sem
  bmem.list.boot.Rd: sem
  bmem.list.jack.Rd: sem
  bmem.mi.Rd: sem
  bmem.mi.boot.Rd: sem
  bmem.mi.jack.Rd: sem
  bmem.pair.Rd: sem
  bmem.pair.boot.Rd: sem
  bmem.pair.jack.Rd: sem
  bmem.sobel.Rd: sem
  popPar.Rd: lavaan
  power.basic.Rd: model.syntax
  power.boot.Rd: model.syntax
  power.curve.Rd: model.syntax
  summary.power.Rd: lavaan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) dot-pred_array_to_df.Rd:20: Lost braces; missing escapes or markup?
    20 | Helper function for as.data.frame.{fitted, forecast}. Converts predictive array to data.frame.
       |                                   ^
Maintainer: ‘Reza Mohammadi <a.mohammadi@uva.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  summary.bmmfit.Rd: summary.brmsfit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Gregory Jefferis <jefferis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gregory",
                    family = "Jefferis",
                    role = c("aut", "cre"),
                    email = "jefferis@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Michele Scandola <michele.scandola@univr.it>’

The BugReports field in DESCRIPTION has
  https://github.com/michelescandola/bmscstan
which should likely be
  https://github.com/michelescandola/bmscstan/issues
instead.
checkRd: (-1) BMSC_pareto_k_table.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:57-59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:60-63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:64-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:67-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMSC_pareto_k_table.Rd:72-74: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Stefan Zeugner <stefan.zeugner@ec.europa.eu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Feldkircher",
                      role = "aut"),
               person(given = "Stefan",
                      family = "Zeugner",
                      role = c("aut", "cre"),
                      email = "stefan.zeugner@ec.europa.eu"),
               person(given = "Paul",
                      family = "Hofmarcher",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                                 user system elapsed
calculate_validation_statistics 4.226  0.111   6.832
obs_v_pred_plot                 2.604  0.007   5.172
Maintainer: ‘Andrey Duvan Rincon Torres <adrincont@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Valeria", "Bejarano"),
                      family = "Salcedo",
                      role = "aut",
                      email = "vbejaranos@unal.edu.co"),
               person(given = c("Sergio", "Alejandro", "Calderon", "Villanueva", "Andrey", "Duvan", "Rincon", "Torres"),
                      family = "<adrincont@unal.edu.co>",
                      role = "aut",
                      email = "adrincont@unal.edu.co"),
               person(given = c("Andrey", "Duvan", "Rincon"),
                      family = "Torres",
                      role = "cre",
                      email = "adrincont@unal.edu.co"))
as necessary.
checkRd: (-1) autoplot.tsregime.Rd:20: Lost braces
    20 | Graph for the stochastic processes of the object \ dQuote {\ code {tsregime}} for: Output process and if they exist for: Threshold process and Covariates process. In the case that there are missing data, a red line is drawn at the indicated time.
       |                                                           ^
checkRd: (-1) autoplot.tsregime.Rd:20: Lost braces; missing escapes or markup?
    20 | Graph for the stochastic processes of the object \ dQuote {\ code {tsregime}} for: Output process and if they exist for: Threshold process and Covariates process. In the case that there are missing data, a red line is drawn at the indicated time.
       |                                                                   ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  autoplot.Rd: autolayer, ggplot, fortify
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
query_bndespar_desimbursements 1.307  0.072   6.324
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  network.run.Rd: jags.model
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
seq_node_monitor 3.935  0.105   5.329
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘bnns.R’
Maintainer: ‘Marvin N. Wright <marv@wrig.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Marvin", "N."),
                    family = "Wright",
                    role = c("aut", "cre"),
                    email = "marv@wrig.de")
as necessary.
Maintainer: ‘Elias Carvalho <ecacarva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Elias",
                      family = "Carvalho",
                      role = c("aut", "cre"),
                      email = "ecacarva@gmail.com"),
               person(given = c("Joao", "R", "N"),
                      family = "Vissoci",
                      role = "aut"),
               person(given = "Luciano",
                      family = "Andrade",
                      role = "aut"),
               person(given = "Wagner",
                      family = "Machado",
                      role = "aut"),
               person(given = c("Emerson", "P"),
                      family = "Cabrera",
                      role = "aut"),
               person(given = c("Julio", "C"),
                      family = "Nievola",
                      role = "aut"))
as necessary.
checkRd: (-1) MvInv.Rd:23-35: Lost braces
    23 | function(eps, u = 0.5, alpha = 1, kappa = 1, gama = 1 / 2, N = 3001) {
       |                                                                      ^
checkRd: (-1) dt_.Rd:19-21: Lost braces
    19 | function(x, df, mean, sd) {
       |                           ^
Maintainer: ‘Riccardo Corradin <riccardo.corradin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Riccardo",
                      family = "Corradin",
                      role = c("aut", "cre"),
                      email = "riccardo.corradin@gmail.com"),
               person(given = "Antonio",
                      family = "Canale",
                      role = "ctb"),
               person(given = "Bernardo",
                      family = "Nipoti",
                      role = "ctb"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘David Alejandro Martell Juarez <alex91599@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Martell-Juarez",
                      role = "aut"),
               person(given = c("D.A.", "&"),
                      family = "Nieto-Barajas",
                      role = "aut"),
               person(family = "L.E.",
                      role = "aut"),
               person(given = c("David", "Alejandro", "Martell"),
                      family = "Juarez",
                      role = "cre",
                      email = "alex91599@gmail.com"))
as necessary.
Maintainer: ‘Joe Suzuki <j-suzuki@sigmath.es.osaka-u.ac.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joe",
                      family = "Suzuki",
                      role = c("aut", "cre"),
                      email = "j-suzuki@sigmath.es.osaka-u.ac.jp"),
               person(given = "Jun",
                      family = "Kawahara",
                      role = "aut"))
as necessary.
Maintainer: ‘Georgios Papageorgiou <gpapageo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Georgios",
                    family = "Papageorgiou",
                    role = c("aut", "cre"),
                    email = "gpapageo@gmail.com")
as necessary.
checkRd: (-1) strength.viewer.Rd:148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:149: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:150: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:151: Lost braces in \itemize; meant \describe ?
checkRd: (-1) strength.viewer.Rd:152: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Brian J. Smith <brian-j-smith@uiowa.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) boa.chain.collapse.Rd:20: Lost braces
    20 | \seealso{ code{\link{boa.chain.reset}}, code{\link{boa.chain.subset}} }
       |               ^
checkRd: (-1) boa.chain.collapse.Rd:20: Lost braces
    20 | \seealso{ code{\link{boa.chain.reset}}, code{\link{boa.chain.subset}} }
       |                                             ^
checkRd: (-1) refAnnots.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refAnnots.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:11-12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) untreatedAnnots.Rd:13-14: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Gleidson Mendes Rebouças <gleidsonreboucas@uern.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Gleidson", "Mendes"),
                      family = "Rebouças",
                      role = c("aut", "cre"),
                      email = "gleidsonreboucas@uern.br"),
               person(given = c("Thiago", "Renee"),
                      family = "Felipe",
                      role = "aut"))
as necessary.
Maintainer: ‘Mario Annau <mario.annau@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("See", "AUTHORS"),
                      family = "file.",
                      role = "aut"),
               person(given = "Mario",
                      family = "Annau",
                      role = "cre",
                      email = "mario.annau@gmail.com"))
as necessary.
checkRd: (-1) Extractor.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Extractor.Rd:19: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ying Yuan <yyuan@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ying",
                      family = "Yuan",
                      role = c("aut", "cre"),
                      email = "yyuan@mdanderson.org"),
               person(given = "Suyu",
                      family = "Liu",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot.R’ ‘utils.R’
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
get_graph   0.018  0.008  10.025
get_stats   0.005  0.000  10.006
get_list    0.004  0.000  10.006
import_data 0.000  0.004  10.013
Maintainer: ‘James Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "James",
                    family = "Curran",
                    role = c("aut", "cre"),
                    email = "j.curran@auckland.ac.nz")
as necessary.
Maintainer: ‘Dongmei Li <dongmei_li@urmc.rochester.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dongmei",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "dongmei_li@urmc.rochester.edu")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘BonEV-package.Rd’:
    \keyword{multiple testing procedure, false discove [TRUNCATED]
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
plot.summary.horseshoe 5.274  0.231   7.423
Maintainer: ‘Levi McClenny <levimcclenny@tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Levi",
                      family = "McClenny",
                      role = c("aut", "cre"),
                      email = "levimcclenny@tamu.edu"),
               person(given = "Mahdi",
                      family = "Imani",
                      role = "aut"),
               person(given = "Ulisses",
                      family = "Braga-Neto",
                      role = "aut"))
as necessary.
Maintainer: ‘Steven L. Scott <steve.the.bayesian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Steven", "L.", "Scott", "is", "the", "sole"),
                      family = "author",
                      role = "aut"),
               person(given = c("creator", "of", "the", "BOOM", "project.", "Some", "code", "in", "the", "BOOM", "libraries", "has", "been", "modified", "from", "other", "open", "source", "projects.", "These", "include"),
                      family = "Cephes",
                      role = "aut",
                      comment = "obtained from Netlib, written by Stephen\n   L. Moshier"),
               person(family = "NEWUOA",
                      role = "aut",
                      comment = "M.J.D Powell, obtained from Powell's web site"),
               person(given = c("a", "modified", "version", "of", "the", "R", "math", "libraries.", "Original", "copyright", "notices", "have", "been", "maintained", "in", "all", "source", "files.", "In", "these"),
                      family = "cases",
                      role = "aut",
                      comment = "R core development team"),
               person(given = c("copyright", "claimed", "by", "Steven", "L.", "Scott", "is", "limited", "to", "modifications", "made", "to", "the", "original", "code.", "Google", "claims", "copyright", "for", "code", "written", "while", "Steven", "L.", "Scott", "was", "employed", "at", "Google", "from", "2008", "-"),
                      family = "2018",
                      role = "aut"),
               person(given = c("but", "BOOM", "is", "not", "an", "officially", "supported", "Google"),
                      family = "project.",
                      role = "aut"),
               person(given = c("Steven", "L."),
                      family = "Scott",
                      role = "cre",
                      email = "steve.the.bayesian@gmail.com"))
as necessary.
Maintainer: ‘Steven L. Scott <steve.the.bayesian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Steven", "L."),
                    family = "Scott",
                    role = c("aut", "cre"),
                    email = "steve.the.bayesian@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  nnet.Rd: MvnPrior
  suggest.burn.Rd: SuggestBurnLogLikelihood
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘BoomSpikeSlab/libs/BoomSpikeSlab.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Amol Pande <amoljpande@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amol",
                      family = "Pande",
                      role = c("aut", "cre"),
                      email = "amoljpande@gmail.com"),
               person(given = "Hemant",
                      family = "Ishwaran",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marc Henrion <mhenrion@mlw.mw>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Gianmarco Vacca <gianmarco.vacca@unicatt.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gianmarco",
                      family = "Vacca",
                      role = c("aut", "cre"),
                      email = "gianmarco.vacca@unicatt.it"),
               person(given = "Stefano",
                      family = "Bertelli",
                      role = "aut"))
as necessary.
Maintainer: ‘Zhengguo Xu <zhengguoxu@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Ari B. Friedman <abfriedman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Keith", "A."),
                      family = "Marill",
                      role = "aut"),
               person(given = c("Ari", "B."),
                      family = "Friedman",
                      role = c("aut", "cre"),
                      email = "abfriedman@gmail.com"))
as necessary.
Maintainer: ‘Samarendra Das <samarendra4849@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Samarendra",
                    family = "Das",
                    role = c("aut", "cre"),
                    email = "samarendra4849@gmail.com")
as necessary.
Maintainer: ‘Jae H. Kim <jaekim8080@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jae.", "H."),
                      family = "Kim",
                      role = "aut",
                      email = "jaekim8080@gmail.com"),
               person(given = c("Jae", "H."),
                      family = "Kim",
                      role = "cre",
                      email = "jaekim8080@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
censboot 7.822  0.182   9.882
Maintainer: ‘Benjamin Baumgartner <benjamin@baumgrt.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Benjamin",
                      family = "Baumgartner",
                      role = c("aut", "cre"),
                      email = "benjamin@baumgrt.com"),
               person(given = "Riccardo",
                      family = "Gatto",
                      role = "aut",
                      email = "gatto@stat.unibe.ch"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dimitris",
                    family = "Rizopoulos",
                    role = c("aut", "cre"),
                    email = "d.rizopoulos@erasmusmc.nl")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
boot.stepAIC 7.623  0.089  10.131
'library' or 'require' call not declared from: ‘survival’
Maintainer: ‘Scott Ritchie <sritchie73@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Qin", "Qin"),
                      family = "Huang",
                      role = "aut"),
               person(given = "Scott",
                      family = "Ritchie",
                      role = c("aut", "cre"),
                      email = "sritchie73@gmail.com"))
as necessary.
Maintainer: ‘Scott Kostyshak <scott.kostyshak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "S",
                      family = "original",
                      role = "aut"),
               person(given = "from",
                      family = "StatLib",
                      role = "aut"),
               person(given = c("by", "Rob", "Tibshirani.", "R", "port", "by", "Friedrich"),
                      family = "Leisch.",
                      role = "aut"),
               person(given = "Scott",
                      family = "Kostyshak",
                      role = "cre",
                      email = "scott.kostyshak@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
boot.twostage 7.37  0.329   9.361
Maintainer: ‘Aaron Fisher <afishe27@alumni.jh.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Fisher",
                    role = c("aut", "cre"),
                    email = "afishe27@alumni.jh.edu")
as necessary.

The Description field contains
  in <doi:10.1080/01621459.2015.1062383> (see also <arXiv:1405.0922> ).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) bootSVD.Rd:13: Lost braces; missing escapes or markup?
    13 | \item{Y}{initial data sample, which can be either a matrix or a \code{\link{ff}} matrix. \code{Y} can be either tall (\eqn{p} by \eqn{n}) or wide (\eqn{n} by \eqn{p}). If \code{Y} is entered and \code{V}, \code{d} and \code{U} (see definitions below) are not entered, then \code{bootSVD} will also compute the SVD of \code{Y}. In this case where the SVD is computed, \code{bootSVD} will assume that the larger dimension of \code{Y} is \eqn{p}, and the smaller dimension of code {Y} is \eqn{n} (i.e. \code{bootSVD} assumes that (\eqn{p>n}). This assumption can be overriden by manually entering \code{V}, \code{U} and \code{d}.\cr
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  As2Vs.Rd: ff
  bootSVD.Rd: ff
  fastSVD.Rd: ff
  ffmatrixmult.Rd: ff
  getMomentsAndMomentCI.Rd: ff
  reindexMatricesByK.Rd: ff
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Guy Nason <g.nason@imperial.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  graphoptBbd.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Francis K.C. Hui <fhui28@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Francis", "K.C."),
                      family = "Hui",
                      role = c("aut", "cre"),
                      email = "fhui28@gmail.com"),
               person(given = "Wade",
                      family = "Blanchard",
                      role = "aut"))
as necessary.

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Maintainer: ‘Jeffrey A. Boatman <jeffrey.boatman@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jeffrey", "A."),
                      family = "Boatman",
                      role = c("aut", "cre"),
                      email = "jeffrey.boatman@gmail.com"),
               person(given = c("David", "M."),
                      family = "Vock",
                      role = "aut"),
               person(given = c("Joseph", "S."),
                      family = "Koopmeiners",
                      role = "aut"))
as necessary.
Maintainer: ‘Miron Bartosz Kursa <M.Kursa@icm.edu.pl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  getImpExtra.Rd: ranger
  getImpLegacyRf.Rd: ranger
  getImpRf.Rd: ranger
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
getImpLegacyRf 5.255  0.105   5.609
Maintainer: ‘Raphaël Clifford <clifford@cs.bris.ac.uk>’

The Description field contains
  (2017) <arXiv:1706.01260>. Also provides functions for generating
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Pierre Lefeuvre <pierre.lefeuvre@cirad.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pierre",
                    family = "Lefeuvre",
                    role = c("aut", "cre"),
                    email = "pierre.lefeuvre@cirad.fr")
as necessary.
Maintainer: ‘Sen Tian <stian@stern.nyu.edu>’

The Description field contains
  for Subset Selection in Least Squares Regression", <arXiv:1911.10191>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
mod_random_clust_sim 5.762  0.223   9.039
Maintainer: ‘Alexis Derumigny <a.f.f.derumigny@tudelft.nl>’

The Description field contains
  Girard, Guyonvarch (2021) <arXiv:2101.05780>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Emanuele Cordano <emanuele.cordano@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Emanuele",
                    family = "Cordano",
                    role = c("aut", "cre"),
                    email = "emanuele.cordano@gmail.com")
as necessary.
Maintainer: ‘Shinichiro Tomizono <cowares@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Shinichiro",
                    family = "Tomizono",
                    role = c("aut", "cre"),
                    email = "cowares@gmail.com")
as necessary.
File ‘box/libs/box.so’:
  Found non-API calls to R: ‘ENVFLAGS’, ‘SET_ENVFLAGS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  print.xtable.Rd: xtable
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "P."),
                      family = "Fay",
                      role = c("aut", "cre"),
                      email = "mfay@niaid.nih.gov"),
               person(given = "Allyson",
                      family = "Mateja",
                      role = "ctb"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Davide Buttarazzi <davidebuttarazzi@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Davide",
                    family = "Buttarazzi",
                    role = c("aut", "cre"),
                    email = "davidebuttarazzi@outlook.com")
as necessary.
Maintainer: ‘Yaoxiang Li <yl814@georgetown.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiang",
                      family = "Lu",
                      role = "aut",
                      email = "Xiang_Luaturmc.rochester.edu"),
               person(given = "Yaoxiang",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "yl814atgeorgetown.edu"),
               person(given = "Tanzy",
                      family = "Love",
                      role = "aut",
                      email = "tanzy_loveaturmc.rochester.edu"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Jianzhao Gao and Xiaodan Fan <gaojz@nankai.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jianzhao",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "gaojz@nankai.edu.cn"),
               person(given = "Linghao",
                      family = "Shen",
                      role = "aut"),
               person(given = "Xiaodan",
                      family = "Fan",
                      role = "aut"))
as necessary.
checkRd: (-1) bp_rats.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) bp_sv.Rd:75: Lost braces; missing escapes or markup?
    75 | $$SV = sqrt(sum(x_{i+1} - x_i)^2/n-1)$$
       |                   ^
checkRd: (-1) bp_sv.Rd:80: Lost braces; missing escapes or markup?
    80 | $$SD = sqrt(sum(x_{i+1} - xbar)^2/n-1)$$
       |                   ^
checkRd: (-1) sv.Rd:78: Lost braces; missing escapes or markup?
    78 | $$SV = sqrt(sum(x_{i+1} - x_i)^2/n-1)$$
       |                   ^
checkRd: (-1) sv.Rd:82: Lost braces; missing escapes or markup?
    82 | $$SD = sqrt(sum(x_{i+1} - xbar)^2/n-1)$$
       |                   ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bp_report.Rd: grid.arrange
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
bp_scatter 3.871  0.071   5.149
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘sim_dat_one_trial_exp_covar.R’ ‘sim_dat_one_trial_exp_nocovar.R’
Maintainer: ‘Laura D'Angelo <laura.dangelo@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Laura",
                    family = "D'Angelo",
                    role = c("aut", "cre"),
                    email = "laura.dangelo@live.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
brace 4.002  0.298   5.374
Maintainer: ‘Ville Satopää <ville.satopaa@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘AddXMLInternal.R’ ‘BrowseSVG.R’ ‘MakeAccessibleSVGInternal.R’
    ‘RewriteSVG.R’ ‘ViewSVG.R’
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
MakeAccessibleSVGMethod 4.594   0.11   5.427
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
population.est        5.116  0.074   8.606
population.test       3.540  0.003   5.502
population.test.MinPv 3.196  0.001   5.062
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_global.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘BranchGLM.R’ ‘BranchGLMTable.R’ ‘VariableImportance.R’
    ‘VariableImportance.boot.R’ ‘summaryBranchGLMVS.R’
Maintainer: ‘Camilo Jose Torres-Jimenez <cjtorresj@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Camilo", "Jose"),
                    family = "Torres-Jimenez",
                    role = c("aut", "cre"),
                    email = "cjtorresj@unal.edu.co")
as necessary.
Maintainer: ‘Benjamin Schlegel <kontakt@benjaminschlegel.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Benjamin",
                      family = "Schlegel",
                      role = c("aut", "cre"),
                      email = "kontakt@benjaminschlegel.ch"),
               person(given = "Marco",
                      family = "Steenbergen",
                      role = "aut"))
as necessary.
Maintainer: ‘Mike Lee <random.deviate@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mike",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "random.deviate@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_sinesp_data.R’ ‘get_sinesp_vde_data.R’
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Amy D Willis <adwillis@uw.edu>’

The Description field contains
  <doi:10.1111/rssc.12206>, and Willis (2016) <arXiv:1604.02598>, as well
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Priyadarshana W.J.R.M. <mjayawardana@swin.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Priyadarshana",
                      family = "W.J.R.M.",
                      role = c("aut", "cre"),
                      email = "mjayawardana@swin.edu.au"),
               person(given = "Georgy",
                      family = "Sofronov",
                      role = "aut"))
as necessary.

File 'R/breakpoint-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Santiago I. Hurtado <santih@carina.fcaglp.unlp.edu.ar>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Santiago", "I."),
                    family = "Hurtado",
                    role = c("cre", "aut"),
                    email = "santih@carina.fcaglp.unlp.edu.ar")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Adam J King <king@cpp.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Adam", "J"),
                    family = "King",
                    role = c("aut", "cre"),
                    email = "king@cpp.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘read_any_breathtest.R’
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
stan_fit 3.683  0.257    5.36
Maintainer: ‘Christian Graul <christian.graul@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Graul",
                      role = c("aut", "cre"),
                      email = "christian.graul@gmail.com"),
               person(given = "Carsten",
                      family = "Poppinga",
                      role = "aut"))
as necessary.
Maintainer: ‘Andrew McKenzie <amckenz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrew",
                      family = "McKenzie",
                      role = c("aut", "cre"),
                      email = "amckenz@gmail.com"),
               person(given = "Minghui",
                      family = "Wang",
                      role = "aut"),
               person(given = "Bin",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  brnb.Rd: negbin
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) brglm.Rd:173: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:174: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:175-176: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:177-178: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:179-180: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:181-182: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brglm.Rd:183-184: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:54-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) profile.brglm.Rd:58: Lost braces in \itemize; meant \describe ?
checkRd: (-1) printHands.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) printHands.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) printHands.Rd:42: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Aurora Torrente <etorrent@est-econ.uc3m.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Javier", "Albert"),
                      family = "Smet",
                      role = "aut",
                      email = "javas@kth.se"),
               person(given = c("Aurora", "Torrente.", "Alice"),
                      family = "Parodi",
                      role = "aut",
                      email = "etorrent@est-econ.uc3m.es"),
               person(given = "Mirco",
                      family = "Patriarca",
                      role = "aut"),
               person(given = "Laura",
                      family = "Sangalli",
                      role = "aut"),
               person(given = "Piercesare",
                      family = "Secchi",
                      role = "aut"),
               person(given = "Simone",
                      family = "Vantini",
                      role = "aut"),
               person(given = "Valeria",
                      family = "Vitelli",
                      role = "aut"),
               person(given = "as",
                      family = "contributors.",
                      role = "aut"),
               person(given = "Aurora",
                      family = "Torrente",
                      role = "cre",
                      email = "etorrent@est-econ.uc3m.es"))
as necessary.
Maintainer: ‘Mauricio Sadinle <msadinle@uw.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘BRL.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
  File ‘bipartiteGibbs.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
  File ‘compareRecords.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
  File ‘linkRecords.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
  File ‘twoFiles.Rd’:
    https://doi.org/10.1080/01621459.2016.1148612
Maintainer: ‘Mark Clements <mark.clements@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Linbo",
                      family = "Wang",
                      role = "aut"),
               person(given = "Mark",
                      family = "Clements",
                      role = c("aut", "cre"),
                      email = "mark.clements@ki.se"),
               person(given = "Thomas",
                      family = "Richardson",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Specified C++11: please drop specification unless essential
checkRd: (-1) assertall.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) assertall.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) assertall.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) assertall.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) brmsmargins.Rd:129: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) brmsmargins.Rd:130: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) brmsmargins.Rd:131: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) brmsmargins.Rd:132: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) builders.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:52: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) builders.Rd:55: Lost braces in \itemize; meant \describe ?
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  builders.Rd: make_standata, as_draws_df
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘brm_archetype_average_cells.Rd’ ‘brm_archetype_average_effects.Rd’
    ‘brm_archetype_cells.Rd’ ‘brm_archetype_effects.Rd’
    ‘brm_archetype_successive_cells.Rd’
    ‘brm_archetype_successive_effects.Rd’ ‘brm_formula.Rd’
    ‘brm_prior_archetype.Rd’ ‘brm_prior_label.Rd’ ‘brm_prior_template.Rd’
    ‘brm_recenter_nuisance.Rd’ ‘summary.brms_mmrm_archetype.Rd’
    ‘utils_archetype.R’
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  createBarPrior.Rd: fitCyclopsModel
  createFastBarPrior.Rd: fitCyclopsModel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Author field differs from that derived from Authors@R
  Author:    ‘Ben Bolker [aut, cre] (<https://orcid.org/0000-0002-2127-0443>), David Robinson [aut], Dieter Menne [ctb], Jonah Gabry [ctb], Paul Buerkner [ctb], Christopher Hua [ctb], William Petry [ctb] (<https://orcid.org/0000-0002-5230-5987>), Joshua Wiley [ctb] (<https://orcid.org/0000-0002-0271-6702>), Patrick Kennedy [ctb], Eduard Szöcs [ctb] (<https://orcid.org/0000-0001-5376-1194>, BASF SE), Indrajeet Patil [ctb], Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>), Bill Denney [ctb], Cory Brunson [ctb], Joe Wasserman [ctb] (<https://orcid.org/0000-0002-9705-1853>), Alexey Stukalov [ctb], Matthieu Bruneaux [ctb]’
  Authors@R: ‘Ben Bolker [aut, cre] (ORCID: <https://orcid.org/0000-0002-2127-0443>), David Robinson [aut], Dieter Menne [ctb], Jonah Gabry [ctb], Paul Buerkner [ctb], Christopher Hua [ctb], William Petry [ctb] (ORCID: <https://orcid.org/0000-0002-5230-5987>), Joshua Wiley [ctb] (ORCID: <https://orcid.org/0000-0002-0271-6702>), Patrick Kennedy [ctb], Eduard Szöcs [ctb] (ORCID: <https://orcid.org/0000-0001-5376-1194>, sponsor: BASF SE), Indrajeet Patil [ctb], Vincent Arel-Bundock [ctb] (ORCID: <https://orcid.org/0000-0003-2042-7063>), Bill Denney [ctb], Cory Brunson [ctb], Joe Wasserman [ctb] (ORCID: <https://orcid.org/0000-0002-9705-1853>), Alexey Stukalov [ctb], Matthieu Bruneaux [ctb]’

  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘glmm_tidiers.R’ ‘rstanarm_tidiers.Rd’
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
mcmc_tidiers 4.297  0.177   5.243
Maintainer: ‘Yan Zhao <yanzhao3@illinois.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Smruti",
                      family = "Padhy",
                      role = "aut"),
               person(given = "Rob",
                      family = "Kooper",
                      role = "aut"),
               person(given = "Yan",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "yanzhao3@illinois.edu"))
as necessary.
Maintainer: ‘Rahim Alhamzawi  (University of Al-Qadisiyah) <rahim.alhamzawi@qu.edu.iq>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rahim",
                    family = "Alhamzawi",
                    role = c("aut", "cre"),
                    email = "rahim.alhamzawi@qu.edu.iq")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘census2021.Rd’
Maintainer: ‘Joshua Ray Tanzer <jtanzer@lifespan.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Joshua", "Ray"),
                    family = "Tanzer",
                    role = c("aut", "cre"),
                    email = "jtanzer@lifespan.org")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
bcor 3.132  0.848   5.343
Maintainer: ‘Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frank",
                    family = "Schaarschmidt",
                    role = c("aut", "cre"),
                    email = "schaarschmidt@biostat.uni-hannover.de")
as necessary.
Maintainer: ‘Ian Jonsen <ian.jonsen@mq.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Marco Giuliano <mgiuliano.mail@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Giuliano",
                    role = c("aut", "cre"),
                    email = "mgiuliano.mail@gmail.com")
as necessary.
Maintainer: ‘Chanseok Park <statpnu@gmail.com>’

The Description field contains
  <arXiv:2308.10150>. This work was supported by the National Research
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"),
               person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"))
as necessary.
Maintainer: ‘Paola Rebora <paola.rebora@unimib.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Paola", "Rebora,Agus"),
                      family = "Salim",
                      role = "aut"),
               person(given = "Marie",
                      family = "Reilly",
                      role = "aut"),
               person(given = "Paola",
                      family = "Rebora",
                      role = "cre",
                      email = "paola.rebora@unimib.it"))
as necessary.
Maintainer: ‘Peter Solymos <psolymos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Solymos",
                    role = c("aut", "cre"),
                    email = "psolymos@gmail.com",
                    comment = c(ORCID = "0000-0001-7337-1740"))
as necessary.
Maintainer: ‘Leah F. South <l1.south@qut.edu.au>’

The Description field contains
  (2018) <arXiv:1809.05800>) is more robust to non-normal summary
  statistics. BSLmisspec (Frazier et al. 2019 <arXiv:1904.04551>)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ernesto Barrios <ebarrios@itam.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ernesto", "Barrios", "based", "on", "Daniel", "Meyer's"),
                      family = "code.",
                      role = "aut"),
               person(given = "Ernesto",
                      family = "Barrios",
                      role = "cre",
                      email = "ebarrios@itam.mx"))
as necessary.
Maintainer: ‘Yanchao Liu <yanchaoliu@wayne.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yanchao",
                    family = "Liu",
                    role = c("aut", "cre"),
                    email = "yanchaoliu@wayne.edu")
as necessary.

The Description field contains
  Yanchao Liu (2022) <arXiv:2205.15263> for technical details. Source
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) bscontrol.Rd:39: Lost braces; missing escapes or markup?
    39 | \item{opt.solver}{a character string in the set {'enum', 'enum_c', 'gurobi', 'cplex', 'lpSolve', 'greedy'} indicating the optimization solver to be used in the program. The choice of 'cplex' requires the package \code{cplexAPI}, 'gurobi' requires the package \code{gurobi}, and 'lpSolve' requires the package \code{lpSolve}. These solver options are only available in the full version at \url{https://github.com/profyliu/bsnsing/}. The default (and the best) is 'enum_c'.}
       |                                                 ^
checkRd: (-1) bscontrol.Rd:45: Lost braces; missing escapes or markup?
    45 | \item{opt.model}{a character string in the set {'gini','error'} indicating the optimization model to solve in the program. The default is 'gini'. The 'error' option is not available in the current version.}
       |                                                ^
Maintainer: ‘Jorge Sicacha-Parada <jasicachap@unal.edu.co>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jorge",
                      family = "Sicacha-Parada",
                      role = c("aut", "cre"),
                      email = "jasicachap@unal.edu.co"),
               person(given = "Edilberto",
                      family = "Cepeda-Cuervo",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
hetero_general 4.188  0.368   5.256
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
summary.bspcov 5.105  0.212   7.791
sbmspcov       4.972  0.267   6.827
Maintainer: ‘Christian Roever <christian.roever@med.uni-goettingen.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Matthew C. Edwards <matt.edwards@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Matthew", "C."),
                      family = "Edwards",
                      role = c("aut", "cre"),
                      email = "matt.edwards@auckland.ac.nz"),
               person(given = "Renate",
                      family = "Meyer",
                      role = "aut"),
               person(given = "Nelson",
                      family = "Christensen",
                      role = "aut"))
as necessary.

The Description field contains
  and Computing (2018). <doi.org/10.1007/s11222-017-9796-9>.
Please write DOIs as <doi:prefix/suffix>.
Maintainer: ‘Deborah Burr <burr@stat.ufl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Deborah",
                    family = "Burr",
                    role = c("aut", "cre"),
                    email = "burr@stat.ufl.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Rocio Paola Maehara <rp.maeharaa@up.edu.pe>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luis", "Benites"),
                      family = "Sanchez",
                      role = c("cre", "aut"),
                      email = "lbenitess@pucp.edu.pe"),
               person(given = c("Rocio", "Paola"),
                      family = "Maehara",
                      role = c("cre", "aut"),
                      email = "rp.maeharaa@up.edu.pe"),
               person(given = c("Paulo", "Jos<a9>", "Alejandro", "Aybar", "Flores"),
                      family = "<a.aybarf@alum.up.edu.pe>",
                      role = "ctb",
                      email = "a.aybarf@alum.up.edu.pe"))
as necessary.
Maintainer: ‘Sixing Hao <s.hao3@lse.ac.uk>’

The Description field contains
  (2022)<arXiv:2201.02023>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Phillip Murray <phillip.murray18@imperial.ac.uk>’

The Description field contains
  Pakkannen (2017) <arXiv:1507.03004v4>, as well as functions to fit BSS
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Timothy Conwell <timconwell@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timothy",
                    family = "Conwell",
                    role = c("aut", "cre"),
                    email = "timconwell@gmail.com")
as necessary.
Maintainer: ‘Zhu Wang <zwang145@uthsc.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Steven L. Scott <steve.the.bayesian@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Steven", "L."),
                    family = "Scott",
                    role = c("aut", "cre"),
                    email = "steve.the.bayesian@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  add.dynamic.regression.Rd: SdPrior
  add.monthly.annual.cycle.Rd: zoo
  bsts.Rd: zoo
  descriptive-plots.Rd: zoo, yearmon
  mbsts.Rd: SpikeSlabPrior
  plot.bsts.mixed.Rd: TimeSeriesBoxplot
  to.posixt.Rd: yearmon
  wide.to.long.Rd: zoo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
File ‘bsts/libs/bsts.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Zuguang Gu <z.gu@dkfz.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zuguang",
                    family = "Gu",
                    role = c("aut", "cre"),
                    email = "z.gu@dkfz.de")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                                                  user system elapsed
bsvars-package                                   5.045  0.002   5.933
summary.PosteriorBSVARSV                         4.829  0.000   5.374
compute_fitted_values.PosteriorBSVARSV           4.798  0.003   6.069
compute_conditional_sd.PosteriorBSVARSV          4.786  0.009   5.112
compute_structural_shocks.PosteriorBSVARSV       4.783  0.012   6.588
compute_variance_decompositions.PosteriorBSVARSV 4.793  0.000   6.113
compute_impulse_responses.PosteriorBSVARSV       4.789  0.003   5.693
estimate.BSVARSV                                 4.791  0.000   5.379
estimate.PosteriorBSVARSV                        4.761  0.020   5.831
Maintainer: ‘Adam Bekhit <imbei@med-imbei.uni-saarland.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Bekhit",
                      role = c("aut", "cre"),
                      email = "imbei@med-imbei.uni-saarland.de"),
               person(given = "Jakob",
                      family = "Schöpe",
                      role = "aut"),
               person(given = "Stefan",
                      family = "Wagenpfeil",
                      role = "aut"))
as necessary.
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gunther",
                    family = "Schauberger",
                    role = c("aut", "cre"),
                    email = "gunther.schauberger@tum.de")
as necessary.
checkRd: (-1) terms.BTM.Rd:23-25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) terms.BTM.Rd:26-32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) terms.data.frame.Rd:25-31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) terms.data.frame.Rd:32-38: Lost braces in \itemize; \value handles \item{}{} directly
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
BTM 9.737  0.213   7.658
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BT.Rd: rpart, rpart.control
  BT_Call.Rd: rpart.control
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Taiane Schaedler Prass <taianeprass@gmail.com>’

The Description field contains
  <doi:10.1111/sjos.12439> and Pumi et al. (2022) <arXiv:2211.02097>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) pnbd.mcmc.DrawParameters.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) pnbd.mcmc.DrawParameters.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  abe.mcmc.DrawParameters.Rd: mcmc.list
  pggg.mcmc.DrawParameters.Rd: mcmc.list
  pnbd.mcmc.DrawParameters.Rd: mcmc.list
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) bubbleHMLegends.Rd:42: Lost braces; missing escapes or markup?
    42 | function. If {sizeBreaks} vector is supplied then this will be ignored and
       |              ^
checkRd: (-1) bubbleHeatmap.Rd:96: Lost braces; missing escapes or markup?
    96 | function. If {sizeBreaks} vector is supplied then this will be ignored and
       |              ^
checkRd: (-1) multiPlotInput.Rd:117: Lost braces; missing escapes or markup?
   117 | \code{unitBase}. This will be supplied to pretty function. If {sizeBreaks} is
       |                                                               ^
Maintainer: ‘Ken Kelley <kkelley@nd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Samantha", "F."),
                      family = "Anderson",
                      role = "aut",
                      email = "samantha.f.anderson@asu.edu"),
               person(given = "Ken",
                      family = "Kelley",
                      role = c("aut", "cre"),
                      email = "kkelley@nd.edu"))
as necessary.
Maintainer: ‘Jiwoong Kim <jwboys26@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiwoong",
                    family = "Kim",
                    role = c("aut", "cre"),
                    email = "jwboys26atgmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
budgetIV 4.029  0.314   5.559
Maintainer: ‘Zhu Wang <zwang145@uthsc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhu",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "https://orcid.org/0000-0002-0773-0052"),
               person(family = "others",
                      role = "aut",
                      comment = "see COPYRIGHTS"))
as necessary.
Maintainer: ‘Joseph Rigdon <jrigdon@wakehealth.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Joseph",
                    family = "Rigdon",
                    role = c("aut", "cre"),
                    email = "jrigdon@wakehealth.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  read_excel_workbook.Rd: read_excel
  read_gsheets.Rd: read_sheet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Marlene Marchena <marchenamarlene@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marlene",
                    family = "Marchena",
                    role = c("aut", "cre"),
                    email = "marchenamarlene@gmail.com")
as necessary.

The Description field contains
  <arXiv:1009.3977>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Lerato E Magosi <magosil86@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  brkpt.Rd: glm.nb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) kink_estimator.Rd:60: Escaped LaTeX specials: \$
Maintainer: ‘Philipp Ottolinger <philipp@ottolinger.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Philipp",
                    family = "Ottolinger",
                    role = c("aut", "cre"),
                    email = "philipp@ottolinger.de")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  lifecycles.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Steven Malevich <sbmalev@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘get_data_from_bursa.R’ ‘list_data_names.R’
Maintainer: ‘Pat Burns <patrick@burns-stat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Burns",
                      family = "Statistics",
                      role = "aut"),
               person(given = "Pat",
                      family = "Burns",
                      role = "cre",
                      email = "patrick@burns-stat.com"))
as necessary.
Maintainer: ‘Pat Burns <patrick@burns-stat.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pat",
                    family = "Burns",
                    role = c("aut", "cre"),
                    email = "patrick@burns-stat.com")
as necessary.
Maintainer: ‘Gnaneshwar G <gnaneshwar441@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gnaneshwar",
                    family = "G",
                    role = c("aut", "cre"),
                    email = "gnaneshwar441@gmail.com")
as necessary.
checkRd: (-1) depreciation-class.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) depreciation-class.Rd:46-47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:46-48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) loan-class.Rd:50-51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:32-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) model2df-methods.Rd:38-39: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
axe-ipred 6.210  0.193   8.322
axe-ksvm  4.534  0.092   5.698
Maintainer: ‘Yi Zhao <zhaoyi1026@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yi", "Zhao", "Brian", "Caffo", "<bcaffo@gmail.com>", "Joshua", "Ewen"),
                      family = "<ewen@kennedykrieger.org>",
                      role = "aut",
                      email = "ewen@kennedykrieger.org"),
               person(given = "Yi",
                      family = "Zhao",
                      role = "cre",
                      email = "zhaoyi1026@gmail.com"))
as necessary.

The Description field contains
  <arXiv:1912.13084> for details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Fabian Krueger <Fabian.Krueger83@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fabian",
                    family = "Krueger",
                    role = c("aut", "cre"),
                    email = "fabian.krueger83@gmail.com")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Franz X. Mohr [aut, cre] (0009-0003-8890-7781)’
  Authors@R: ‘Franz X. Mohr [aut, cre] (ORCiD: 0009-0003-8890-7781)’
Maintainer: ‘Katharine M. Mullen <katharine.mullen@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Katharine", "M."),
                    family = "Mullen",
                    role = c("aut", "cre"),
                    email = "katharine.mullen@stat.ucla.edu")
as necessary.
Malformed Description field: should contain one or more complete sentences.
Maintainer: ‘Amir Nikooienejad <amir.nikooienejad@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amir",
                      family = "Nikooienejad",
                      role = c("aut", "cre"),
                      email = "amir.nikooienejad@gmail.com"),
               person(given = c("Valen", "E."),
                      family = "Johnson",
                      role = "ths"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Seung Jun Shin <sjshin@korea.ac.kr>’

The Description field contains
  detection proposed by Shin et al. <arXiv:1812.10107>. The backward
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
'data(package=)' call not declared from: ‘NAM’
Maintainer: ‘Carlos Biagolini-Jr.<c.biagolini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carlos",
                    family = "Biagolini-Jr.",
                    role = c("aut", "cre"),
                    email = "c.biagolini@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Hunyong Cho <hunyong.cho@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hunyong",
                      family = "Cho",
                      role = c("aut", "cre"),
                      email = "hunyong.cho@gmail.com"),
               person(given = "Chuwen",
                      family = "Liu",
                      role = "aut"),
               person(given = "Jinyoung",
                      family = "Park",
                      role = "aut"),
               person(given = "Di",
                      family = "Wu",
                      role = "aut"))
as necessary.
Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Sill",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Hielscher",
                      role = "aut"),
               person(given = "Manuela",
                      family = "Zucknick",
                      role = "aut"),
               person(given = "Natalia",
                      family = "Becker.",
                      role = "aut"),
               person(given = "Frederic",
                      family = "Bertrand",
                      role = "cre",
                      email = "frederic.bertrand@utt.fr"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  balancedFolds.Rd: EPSGO
  coef.intsearch.Rd: EPSGO
  plot.summary.int.Rd: EPSGO
  stabpath.Rd: glmnet
  summary.intsearch.Rd: EPSGO
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Thomas Wieland <thomas.wieland.kit@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Wieland",
                    role = c("aut", "cre"),
                    email = "thomas.wieland.kit@googlemail.com")
as necessary.
Maintainer: ‘Mitchell Lyons <mitchell.lyons@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘calculate_clustering_metrics.Rd’:
    \keyword{matrix,}
    \keyword{metrics,}
Maintainer: ‘Gokmen Altay <altayscience@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gokmen",
                      family = "Altay",
                      role = c("aut", "cre"),
                      email = "altayscience@gmail.com"),
               person(given = "Frank",
                      family = "Emmert-Streib",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
sigtestMTC 5.355  0.179   6.933
Maintainer: ‘Rosaria Lombardo <rosaria.lombardo@unicampania.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rosaria",
                      family = "Lombardo",
                      role = c("aut", "cre"),
                      email = "rosaria.lombardo@unicampania.it"),
               person(given = c("Eric", "J"),
                      family = "Beh",
                      role = "aut"),
               person(given = "Michel",
                      family = "van de Velden",
                      role = "aut"))
as necessary.
Maintainer: ‘Trevor Ringrose <t.j.ringrose@cranfield.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Trevor",
                    family = "Ringrose",
                    role = c("aut", "cre"),
                    email = "t.j.ringrose@cranfield.ac.uk")
as necessary.
Maintainer: ‘Junyao Jiang <jiangjunyao789@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junyao",
                    family = "Jiang",
                    role = c("aut", "cre"),
                    email = "jiangjunyao789@163.com")
as necessary.
Maintainer: ‘Quinn N. Lathrop <quinn.lathrop@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Quinn", "N."),
                    family = "Lathrop",
                    role = c("aut", "cre"),
                    email = "quinn.lathrop@gmail.com")
as necessary.
Maintainer: ‘Alex J. Cannon <alex.cannon@canada.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Alex", "J."),
                    family = "Cannon",
                    role = c("aut", "cre"),
                    email = "alex.cannon@canada.ca")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
CADF_to_migration_model 4.687  0.377   5.189
Maintainer: ‘Claudio Lupi <lupi@unimol.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Claudio",
                    family = "Lupi",
                    role = c("aut", "cre"),
                    email = "lupi@unimol.it")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
CoUMAP.plot  5.145  0.019   5.433
CoUMAP       4.713  0.019   5.368
CAESAR.CTDEP 3.549  0.536   5.279
Maintainer: ‘Simon Urbanek <Simon.Urbanek@r-project.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simon",
                      family = "Urbanek",
                      role = c("aut", "cre"),
                      email = "Simon.Urbanek@r-project.org"),
               person(given = "Jeffrey",
                      family = "Horner",
                      role = "aut",
                      email = "jeff.horner@vanderbilt.edu"))
as necessary.
possible bashism in configure.ac line 36 (should be 'b = a'):
  if test "xx$CAIRO_LIBS" == "xx"; then
  possible bashism in configure.ac line 129 (should be 'b = a'):
  if test "xx${CAIRO_LIBS}" == "xx"; then
  possible bashism in configure.ac line 130 (should be 'b = a'):
     if test $uses_ats == "yes"; then
  possible bashism in configure.ac line 214 (test -a/-o):
       if test -z "${FCI}" -a -e "${pre}/include/fontconfig/fontconfig.h"; then
  possible bashism in configure.ac line 218 (test -a/-o):
       if test -z "${FTI}" -a -e "${pre}/include/freetype2/freetype/freetype.h"; then
  possible bashism in configure.ac line 227 (test -a/-o):
     if test -z "${FCI}" -a -z "${FTI}"; then
File ‘Cairo/libs/Cairo.so’:
  Found non-API calls to R: ‘EXTPTR_PTR’, ‘Rf_GetOption’, ‘Rf_gsetVar’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Felipe Campelo <fcampelo@gmail.com>’

The Description field contains
  <arxiv:1908.01720>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alan Gu <alan.on.ca@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Gu",
                    role = c("aut", "cre"),
                    email = "alan.on.ca@gmail.com")
as necessary.
Maintainer: ‘Abbas Parchami <parchami@uk.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abbas",
                    family = "Parchami",
                    role = c("aut", "cre"),
                    email = "parchami@uk.ac.ir",
                    comment = "Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran")
as necessary.
Maintainer: ‘Stephen Froehlich <stephen.froehlich@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Froehlich",
                    role = c("aut", "cre"),
                    email = "stephen.froehlich@gmail.com")
as necessary.
checkRd: (-1) calcUnique.Rd:24: Lost braces
    24 | functions, and often the /code{cut()} function are relatively slow when working with tens of millions of rows or more.
       |                               ^
Maintainer: ‘John Ford <JoRuFo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephanie",
                      family = "Lane",
                      role = c("aut", "cre")),
               person(given = "John",
                      family = "Ford",
                      role = c("aut", "cre"),
                      email = "jorufo@gmail.com"),
               person(given = "Clark",
                      family = "Jeffries",
                      role = "aut"),
               person(given = "Diana",
                      family = "Perkins",
                      role = "aut"))
as necessary.
Maintainer: ‘Anoop Shah <anoop@doctors.org.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘internal_calib_aj.R’ ‘internal_calib_pv.R’
    ‘internal_extract_ids_states.R’ ‘plot.calib_mlr.Rd’ ‘plot_calib.R’
    ‘weights.R’
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
plot.calib_mlr 4.386  0.158   6.253
Maintainer: ‘Chih-Li Sung <iamdfchile@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chih-Li",
                    family = "Sung",
                    role = c("aut", "cre"),
                    email = "iamdfchile@gmail.com")
as necessary.

The Description field contains
  <arXiv:1806.01453>. This calibration method is particularly useful when
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Jan Graffelman <jan.graffelman@upc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jan",
                    family = "Graffelman",
                    role = c("aut", "cre"),
                    email = "jan.graffelman@upc.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Oyvind Langsrud <oyl@ssb.no>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Øyvind",
                      family = "Langsrud",
                      role = "aut"),
               person(given = "Oyvind",
                      family = "Langsrud",
                      role = "cre",
                      email = "oyl@ssb.no"))
as necessary.
Maintainer: ‘Marius Puke <marius.puke@uni-hohenheim.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:2203.04065>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) calibration_bands.Rd:19: Lost braces; missing escapes or markup?
    19 | \item{y}{response variable (in {0,1}).}
       |                                ^
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dominik Heider <heiderd@mathematik.uni-marburg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johanna",
                      family = "Schwarz",
                      role = "aut"),
               person(given = "Dominik",
                      family = "Heider",
                      role = c("aut", "cre"),
                      email = "heiderd@mathematik.uni-marburg.de"))
as necessary.
Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) Recording.Rd:112: Lost braces; missing escapes or markup?
   112 | Stop recording images with {camcorder}.
       |                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BuildGeneSets.Rd: edgeR, org.Hs.eg.db, org.Mm.eg.db
  CAMML.Rd: vamForSeurat
  ChIMP.Rd: vamForSeurat
  GetGeneSets.Rd: org.Hs.eg.db, org.Mm.eg.db
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
BuildGeneSets 4.521  0.234   5.086
Maintainer: ‘Lukas Lundstrom <lukas.rokka@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Author field differs from that derived from Authors@R
  Author:    ‘Peter Desmet [aut, cre] (<https://orcid.org/0000-0002-8442-8025>, Research Institute for Nature and Forest (INBO)), Sanne Govaert [aut] (<https://orcid.org/0000-0002-8939-1305>, Research Institute for Nature and Forest (INBO)), Pieter Huybrechts [aut] (<https://orcid.org/0000-0002-6658-6062>, Research Institute for Nature and Forest (INBO)), Damiano Oldoni [aut] (<https://orcid.org/0000-0003-3445-7562>, Research Institute for Nature and Forest (INBO)), Research Institute for Nature and Forest (INBO) [cph] (https://www.vlaanderen.be/inbo/en-gb/), LifeWatch Belgium [fnd] (https://lifewatch.be)’
  Authors@R: ‘Peter Desmet [aut, cre] (ORCID: <https://orcid.org/0000-0002-8442-8025>, affiliation: Research Institute for Nature and Forest (INBO)), Sanne Govaert [aut] (ORCID: <https://orcid.org/0000-0002-8939-1305>, affiliation: Research Institute for Nature and Forest (INBO)), Pieter Huybrechts [aut] (ORCID: <https://orcid.org/0000-0002-6658-6062>, affiliation: Research Institute for Nature and Forest (INBO)), Damiano Oldoni [aut] (ORCID: <https://orcid.org/0000-0003-3445-7562>, affiliation: Research Institute for Nature and Forest (INBO)), Research Institute for Nature and Forest (INBO) [cph] (https://www.vlaanderen.be/inbo/en-gb/), LifeWatch Belgium [fnd] (https://lifewatch.be)’
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
check_camtrapdp 1.052  0.148   8.453
read_camtrapdp  0.648  0.089   5.477
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_coef-commOccu-method.Rd: fit
  plot_effects-commOccu-method.Rd: fit
  predict-commOccu-method.Rd: fit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘wds.R’
Maintainer: ‘Audrey Q. Fu <audreyqyfu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Audrey", "Qiuyan"),
                      family = "Fu",
                      role = "aut"),
               person(given = "Xiaoyue",
                      family = "Wang",
                      role = "aut"),
               person(given = c("Audrey", "Q."),
                      family = "Fu",
                      role = "cre",
                      email = "audreyqyfu@gmail.com"))
as necessary.
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
CorrectBatch 5.293  0.152   6.205
Maintainer: ‘Yuchao Jiang <yuchaoj@email.unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuchao",
                      family = "Jiang",
                      role = c("aut", "cre"),
                      email = "yuchaoj@email.unc.edu"),
               person(given = c("Nancy", "R."),
                      family = "Zhang",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘MDA231_tree.pdf’
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
CLES 4.75  0.279   6.187
Maintainer: ‘Marco Lugo <marco.lugo.rodriguez@umontreal.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marco",
                    family = "Lugo",
                    role = c("aut", "cre"),
                    email = "marco.lugo.rodriguez@umontreal.ca")
as necessary.
checkRd: (-1) macrocaic.Rd:31: Lost braces; missing escapes or markup?
    31 |      {RRD = ln(N_1/N_2)}
       |      ^
checkRd: (-1) macrocaic.Rd:34: Lost braces; missing escapes or markup?
    34 |      {PDI = (N_1/(N_1 + N_2))-0.5}
       |      ^
checkRd: (-1) pd.calc.Rd:33: Lost braces
    33 |   \item{Length of tip branch lengths (TIPS)}{Length of tip branch lengths (TIPS)}{Unlike UEH, this measure does not use the unique paths to each tips on the \strong{subtree} and instead gives the sum of the unique branches leading to the tips on the \strong{complete tree}.}
       |                                                                                  ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  comparative.data.Rd: reorder.phylo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John T. Buynak <jbuynak94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "T."),
                    family = "Buynak",
                    role = c("aut", "cre"),
                    email = "jbuynak94@gmail.com")
as necessary.
Maintainer: ‘Joel Barnes <j@barnzilla.ca>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Oswaldo Santos Baquero <baquero@usp.br>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CalculateGlobalSens.Rd: sensRange
  CalculateLocalSens.Rd: sensFun, sensRange
  DesignSurvey.Rd: svydesign
  PlotLocalSens.Rd: element_text
  SetRanges.Rd: sensRange
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
'library' or 'require' call not declared from: ‘deSolve’
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    captr .1.4
    captr .1.3
    captr .1.2
Maintainer: ‘Vincent Brault <vincent.brault@agroparistech.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sylvain",
                      family = "Arlot",
                      role = "aut"),
               person(given = "Vincent",
                      family = "Brault",
                      role = c("aut", "cre"),
                      email = "vincent.brault@agroparistech.fr"),
               person(given = "Jean-Patrick",
                      family = "Baudry",
                      role = "aut"),
               person(given = "Cathy",
                      family = "Maugis",
                      role = "aut"),
               person(given = "Bertrand",
                      family = "Michel",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘do_la.Rd’ ‘linalg.Rd’ ‘scale_matrix.Rd’ ‘solve.caracas_symbol.Rd’
    ‘solve_lin.Rd’
Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Duncan",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "duncan.lee@glasgow.ac.uk")
as necessary.
Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Duncan",
                    family = "Lee",
                    role = c("aut", "cre"),
                    email = "duncan.lee@glasgow.ac.uk")
as necessary.
Maintainer: ‘Duncan Lee <Duncan.Lee@glasgow.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duncan",
                      family = "Lee",
                      role = c("aut", "cre"),
                      email = "duncan.lee@glasgow.ac.uk"),
               person(given = "Alastair",
                      family = "Rushworth",
                      role = "aut"),
               person(given = "Gary",
                      family = "Napier",
                      role = "aut"),
               person(given = "William",
                      family = "Pettersson",
                      role = "aut"))
as necessary.
Maintainer: ‘Fraenzi Korner-Nievergelt <fraenzi.korner@oikostat.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fraenzi",
                      family = "Korner-Nievergelt",
                      role = c("aut", "cre"),
                      email = "fraenzi.korner@oikostat.ch"),
               person(given = "Ivo",
                      family = "Niermann",
                      role = "aut"),
               person(given = "Oliver",
                      family = "Behr",
                      role = "aut"),
               person(given = c("Matthew", "A."),
                      family = "Etterson",
                      role = "aut"),
               person(given = "Robert",
                      family = "Brinkmann",
                      role = "aut"),
               person(given = "Pius",
                      family = "Korner",
                      role = "aut"),
               person(given = "Barbara",
                      family = "Hellriegel",
                      role = "aut"),
               person(given = "Tobias",
                      family = "Roth",
                      role = "aut"),
               person(given = c("Manuela", "M.", "P."),
                      family = "Huso",
                      role = "aut"),
               person(given = "Dan",
                      family = "Dalthorp",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  persistence.prob.Rd: coxph, survreg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Oleg Nenadic <onenadi@uni-goettingen.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) plot.ca.rd:53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.ca.rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot.mjca.rd:66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) States.Rd:48: Escaped LaTeX specials: \$
checkRd: (-1) fitweibull.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitweibull.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitweibull.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘cosinor-constructor.R’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
ggcosinor 4.576  0.694   6.769
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Verena",
                      family = "Zuber",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Maintainer: ‘Hyungsuk Tak <hyungsuk.tak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyungsuk",
                      family = "Tak",
                      role = c("aut", "cre"),
                      email = "hyungsuk.tak@gmail.com"),
               person(given = "Henghsiu",
                      family = "Tsai",
                      role = "aut"),
               person(given = "Kisung",
                      family = "You",
                      role = "aut"))
as necessary.
checkRd: (-1) build_for_cran.Rd:13: Lost braces
    13 | The exit status code{R CMD build}, invisibly.
       |                     ^
Maintainer: ‘Stéphane Laurent <laurent_step@outlook.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stéphane",
                    family = "Laurent",
                    role = c("aut", "cre"),
                    email = "laurent_step@outlook.fr")
as necessary.
Maintainer: ‘Ziyi Li <zli16@mdanderson.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ziyi",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "zli16@mdanderson.org")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
influence-mixed-models 4.576   0.16   5.539
Maintainer: ‘Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thomas",
                    family = "Welchowski",
                    role = c("aut", "cre"),
                    email = "welchow@imbie.meb.uni-bonn.de")
as necessary.

The Description field contains
  <arXiv:1802.08178>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
File ‘cartographer/libs/cartographer.so’:
  Found non-API call to R: ‘PRVALUE’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘cartographr.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  dotDensityLayer.Rd: st_sample
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
getPngLayer 5.731  0.183   9.369
Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Frederic Bertrand <frederic.bertrand@utt.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Yaofang Hu <yaofangh@smu.edu>’

The Description field contains
  Wang (2022) <arXiv:2306.15616>.  In addition to CASCORE, this package
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
claimFitting-methods 4.834  0.276   8.237
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘CBRBase.R’ ‘RFModel.R’ ‘RegressionModel.R’ ‘distance.R’
    ‘generate_grid.R’ ‘utils.R’
Maintainer: ‘Rich Nielsen <rnielsen@mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Rich",
                    family = "Nielsen",
                    role = c("aut", "cre"),
                    email = "rnielsen@mit.edu")
as necessary.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
ComputeCI 3.414  0.139   5.307
Maintainer: ‘Yuqing Pan <yuqing.pan@stat.fsu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yuqing",
                      family = "Pan",
                      role = c("aut", "cre"),
                      email = "yuqing.pan@stat.fsu.edu"),
               person(given = "Qing",
                      family = "Mai",
                      role = "aut",
                      email = "mai@stat.fsu.edu"),
               person(given = "Xin",
                      family = "Zhang",
                      role = "aut",
                      email = "henry@stat.fsu.edu"))
as necessary.

The Description field contains
  (2018) <arXiv:1805.04421>. The low-dimensional covariates and the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Masami Saga <msaga@mtb.biglobe.ne.jp>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("The", "Institute", "of", "Statistical"),
                      family = "Mathematics",
                      role = "aut"),
               person(given = "Masami",
                      family = "Saga",
                      role = "cre",
                      email = "msaga@mtb.biglobe.ne.jp"))
as necessary.
Maintainer: ‘Charles J. Geyer <charlie@stat.umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alan",
                      family = "Agesti",
                      role = "aut",
                      email = "aa@stat.ufl.edu"),
               person(given = c("Charles", "J."),
                      family = "Geyer",
                      role = "cre",
                      email = "charlie@stat.umn.edu"))
as necessary.
Maintainer: ‘Gunther Schauberger <gunther.schauberger@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gunther",
                      family = "Schauberger",
                      role = c("aut", "cre"),
                      email = "gunther.schauberger@tum.de"),
               person(given = "Gerhard",
                      family = "Tutz",
                      role = "aut"))
as necessary.
Maintainer: ‘Ruben H. Roa-Ureta <ruben.roa.ureta@mail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ruben", "H."),
                    family = "Roa-Ureta",
                    role = c("aut", "cre"),
                    email = "ruben.roa.ureta@mail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Juraj Szitas <szitas.juraj13@gmail.com>’

The Description field contains
  Hadad, Athey, Wager (2019) <arXiv:1908.09874>, particularly their mean,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘nl zhang <setseed2016@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "nl",
                    family = "zhang",
                    role = c("aut", "cre"),
                    email = "setseed2016@gmail.com")
as necessary.
Maintainer: ‘Nick Williams <ntwilliams.personal@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Williams",
                    role = c("aut", "cre"),
                    email = "ntwilliams.personal@gmail.com")
as necessary.
Maintainer: ‘Adrien Taudiere <adrien.taudiere@tutanota.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) catmapdata.Rd:9-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:14-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:16-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:18-19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:19-20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) catmapdata.Rd:20-21: Lost braces in \itemize; meant \describe ?
Found the following files/directories:
  ‘catmapdata.fixed.effects.plot.pdf’ ‘catmapdata.funnel.plot.pdf’
  ‘catmapdata.output.txt’ ‘catmapdata.random.effects.plot.pdf’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  catpredi.Rd: mgcv
  catpredi.survival.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Fernando Tusell <fernando.tusell@ehu.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ported", "to", "R", "by", "Ted"),
                      family = "Harding",
                      role = "aut"),
               person(given = c("Fernando", "Tusell.", "Original", "by", "Joseph", "L."),
                      family = "Schafer.",
                      role = "aut",
                      email = "jls@stat.psu.edu"),
               person(given = "Fernando",
                      family = "Tusell",
                      role = "cre",
                      email = "fernando.tusell@ehu.es"))
as necessary.
Specified C++14: please drop specification unless essential
Maintainer: ‘Cheng Hua <chuabest@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "David",
                      family = "Magis",
                      role = "aut",
                      comment = "U Liege, Belgium"),
               person(given = "Gilles",
                      family = "Raiche",
                      role = "aut",
                      comment = "UQAM, Canada"),
               person(given = c("Juan", "Ramon"),
                      family = "Barrada",
                      role = "aut",
                      comment = "U Zaragoza, Spain"),
               person(given = "Cheng",
                      family = "Hua",
                      role = "cre",
                      email = "chuabest@gmail.com"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CATT.Rd’:
    \keyword{Cochran-Armitage; Trend Test}
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
hdi.ancestralCauchy 5.562   0.02   5.956
Maintainer: ‘Suyeon Kang <skang062@ucr.edu>’

The Description field contains
  <arXiv:2109.06940>. This package allows researchers to use the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) tpcExample.Rd:30: Escaped LaTeX specials: \&
Maintainer: ‘Kevin Quinn <kmq@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Adam",
                      family = "Glynn",
                      role = "aut",
                      email = "adam.glynn@emory.edu"),
               person(given = "Kevin",
                      family = "Quinn",
                      role = c("aut", "cre"),
                      email = "kmq@umich.edu"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Naeem Khoshnevis [aut, cre] (<https://orcid.org/0000-0003-4315-1426>, Kempner), Xiao Wu [aut] (<https://orcid.org/0000-0002-4884-657X>, CUMC), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’
  Authors@R: ‘Naeem Khoshnevis [aut, cre] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: Kempner), Xiao Wu [aut] (ORCID: <https://orcid.org/0000-0002-4884-657X>, AFFILIATION: CUMC), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’
Maintainer: ‘Alain Hauser <alhauser@google.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kay", "H."),
                      family = "Brodersen",
                      role = "aut",
                      email = "kbrodersen@google.com"),
               person(given = "Alain",
                      family = "Hauser",
                      role = c("aut", "cre"),
                      email = "alhauser@google.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Fiammetta Menchetti <fiammetta.menchetti@gmail.com>’

The Description field contains
  (MBSTS) as described in Menchetti & Bojinov (2020) <arXiv:2006.12269>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) as.mbsts.Rd:71: Lost braces; missing escapes or markup?
    71 |   \item{states.samples}{(\code{niter}- \code{burn}) draws from p(alpha_t | Y_{1:T}).}
       |                                                                              ^
checkRd: (-1) mcmc.Rd:61: Lost braces; missing escapes or markup?
    61 |   \item{states.samples}{(\code{niter}- \code{burn}) draws from p(alpha_t | Y_{1:T}).}
       |                                                                              ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘causal-model.R’ ‘check-linearity.R’ ‘deprecated.R’
    ‘translation-modules.R’ ‘utils.R’
Maintainer: ‘Eric Dunipace <edunipace@mail.harvard.edu>’

The Description field contains
  Dunipace, Eric (2021) <arXiv:2109.01991>.  The package will build the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cotOOP.R’ ‘utils.R’
Maintainer: ‘Matthew Blackwell <mblackwell@gov.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matthew",
                    family = "Blackwell",
                    role = c("aut", "cre"),
                    email = "mblackwell@gov.harvard.edu.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  causalSLSE.Rd: vcovHC.default
  extract-causalslse-method.Rd: extract, texreg
  extract-slseFit-method.Rd: extract, texreg
  predict.Rd: vcovHC.default
  summary.Rd: vcovHC.default
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Giovanna Capizzi <giovanna.capizzi@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giovanna",
                      family = "Capizzi",
                      role = c("aut", "cre"),
                      email = "giovanna.capizzi@unipd.it"),
               person(given = "Guido",
                      family = "Masarotto",
                      role = "aut"))
as necessary.
Maintainer: ‘Rosaria Lombardo  <rosaria.lombardo@unicampania.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rosaria",
                      family = "Lombardo",
                      role = c("aut", "cre"),
                      email = "rosaria.lombardo@unicampania.it"),
               person(given = c("Eric", "J"),
                      family = "Beh",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Zhongheng Zhang <zh_zhang1984@zju.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhongheng",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zh_zhang1984@zju.edu.cn"),
               person(given = c("Sir", "Run", "Run", "Shaw"),
                      family = "hospital",
                      role = "aut"),
               person(given = c("Zhejiang", "university", "school", "of"),
                      family = "medicine",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘CBCgrps2.6-package.Rd’:
    \keyword{ bivariate analysis; statisitcal descript [TRUNCATED]
Maintainer: ‘Dan Dalthorp <ddalthorp@protonmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dan",
                    family = "Dalthorp",
                    role = c("aut", "cre"),
                    email = "ddalthorp@protonmail.com")
as necessary.

The Description field contains
  (2013) <arXiv:1303.5990>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Watson <david.s.watson11@gmail.com>’

The Description field contains
  details, see Watson & Silva (2022) <arXiv:2205.05715>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
bipartite 3.743  0.354   5.396
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cbs_add_statcode_column.Rd’ ‘cbs_add_unit_column.Rd’
    ‘cbs_get_maps.Rd’ ‘cbs_get_sf.R’ ‘cbs_get_sf.Rd’
    ‘cbs_join_sf_with_data.Rd’
Maintainer: ‘Shouri Hu <e0054325@u.nus.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Hock", "Peng"),
                      family = "Chan",
                      role = "aut"),
               person(given = "Shouri",
                      family = "Hu",
                      role = c("aut", "cre"),
                      email = "e0054325@u.nus.edu"))
as necessary.

The Description field contains
  and Shouri Hu (2018) <arXiv:1805.11793>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
create_CircularArrow 4.22  0.033   5.555
Maintainer: ‘Sébastien Déjean <sebastien.dejean@math.univ-toulouse.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ignacio",
                      family = "González",
                      role = "aut"),
               person(given = "Sébastien",
                      family = "Déjean",
                      role = c("aut", "cre"),
                      email = "sebastien.dejean@math.univ-toulouse.fr"))
as necessary.
Maintainer: ‘David J. Marchette <dmarchette@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "J."),
                    family = "Marchette",
                    role = c("aut", "cre"),
                    email = "dmarchette@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Rcpp_CONEC-class.Rd: C++Object-class
  Rcpp_CPS-class.Rd: C++Object-class
  Rcpp_CTRL-class.Rd: C++Object-class
  Rcpp_DCP-class.Rd: C++Object-class
  Rcpp_DLP-class.Rd: C++Object-class
  Rcpp_DNL-class.Rd: C++Object-class
  Rcpp_DQP-class.Rd: C++Object-class
  Rcpp_PDV-class.Rd: C++Object-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Solt Kovacs <ccda@caesar.elte.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Solt",
                      family = "Kovacs",
                      role = c("aut", "cre"),
                      email = "ccda@caesar.elte.hu"),
               person(given = "Jozsef",
                      family = "Kovacs",
                      role = "aut"),
               person(given = "Peter",
                      family = "Tanos",
                      role = "aut"))
as necessary.
Maintainer: ‘Andreas Anastasiou <anastasiou.andreas@ucy.ac.cy>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
getCCM 4.884  0.161   5.976
Maintainer: ‘Michael B. Sohn <msohn@mail.med.upenn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "B."),
                    family = "Sohn",
                    role = c("aut", "cre"),
                    email = "msohn@mail.med.upenn.edu")
as necessary.
Maintainer: ‘Garrett M. Dancik <dancikg@easternct.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Garrett", "M."),
                      family = "Dancik",
                      role = c("aut", "cre"),
                      email = "dancikg@easternct.edu"),
               person(given = "Yuanbin",
                      family = "Ru",
                      role = "aut"))
as necessary.
Maintainer: ‘Uwe Menzel <uwemenzel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Uwe",
                    family = "Menzel",
                    role = c("aut", "cre"),
                    email = "uwemenzel@gmail.com")
as necessary.
Maintainer: ‘W.John Braun <john.braun@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "W.J.",
                      family = "Braun",
                      role = "aut"),
               person(given = "W.John",
                      family = "Braun",
                      role = "cre",
                      email = "john.braun@ubc.ca"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
CCSRfind 1.266   2.96   6.126
Maintainer: ‘Abhibhav Sharma <mail.abhibhav@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Abhibhav",
                    family = "Sharma",
                    role = c("aut", "cre"),
                    email = "mail.abhibhav@gmail.com")
as necessary.
checkRd: (-1) CUR.Rd:25: Lost braces; missing escapes or markup?
    25 | The number of low-dimension of C (J1 < {N,M}).
       |                                        ^
checkRd: (-1) CUR.Rd:29: Lost braces; missing escapes or markup?
    29 | The number of low-dimension of R (J2 < {N,M}).
       |                                        ^
checkRd: (-1) CX.Rd:23: Lost braces; missing escapes or markup?
    23 | The number of low-dimension (J < {N,M}).
       |                                  ^
Maintainer: ‘Yonghui Dong <yonghui.dong@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yonghui",
                    family = "Dong",
                    role = c("aut", "cre"),
                    email = "yonghui.dong@gmail.com")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
cdcat 0.676  0.104   7.104
Maintainer: ‘Mathieu Vrac <mathieu.vrac@lsce.ipsl.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mathieu",
                      family = "Vrac",
                      role = c("aut", "cre"),
                      email = "mathieu.vrac@lsce.ipsl.fr"),
               person(given = "Paul-Antoine",
                      family = "Michelangeli",
                      role = "aut",
                      email = "pam@climpact.com"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Ang Yu [aut, cre, cph] (<https://ang-yu.github.io/>, <https://orcid.org/0000-0002-1828-0165>)’
  Authors@R: ‘Ang Yu [aut, cre, cph] (website: <https://ang-yu.github.io/>, ORCID: <https://orcid.org/0000-0002-1828-0165>)’
Maintainer: ‘Alicja Wolny-Dominiak <woali@ue.katowice.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Peter",
                      family = "Adamic",
                      role = "aut"),
               person(given = "Alicja",
                      family = "Wolny-Dominiak",
                      role = c("aut", "cre"),
                      email = "woali@ue.katowice.pl"))
as necessary.
Maintainer: ‘Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alexander",
                      family = "Robitzsch",
                      role = c("aut", "cre"),
                      email = "robitzsch@ipn.uni-kiel.de"),
               person(given = "Thomas",
                      family = "Kiefer",
                      role = "aut"),
               person(given = c("Ann", "Cathrice"),
                      family = "George",
                      role = "aut"),
               person(given = "Ali",
                      family = "Uenlue",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) data.dtmr.Rd:57: Lost braces; missing escapes or markup?
    57 | \code{RU}: {Referent units}
       |            ^
checkRd: (-1) data.dtmr.Rd:59: Lost braces; missing escapes or markup?
    59 | \code{PI}: {Partitioning and iterating attribute}
       |            ^
checkRd: (-1) data.dtmr.Rd:61: Lost braces; missing escapes or markup?
    61 | \code{APP}: {Appropriateness attribute}
       |             ^
checkRd: (-1) data.dtmr.Rd:63: Lost braces; missing escapes or markup?
    63 | \code{MC}: {Multiplicative Comparison attribute}
       |            ^
Maintainer: ‘Philippe Massicotte <pm@bios.au.dk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Norm Matloff <normmatloff@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Norm",
                      family = "Matloff",
                      role = c("aut", "cre"),
                      email = "normmatloff@gmail.com"),
               person(given = "Vincent",
                      family = "Yang",
                      role = "aut",
                      email = "vinyang@ucdavis.edu"),
               person(given = "Harrison",
                      family = "Nguyen",
                      role = "aut",
                      email = "hhnguy@ucdavis.edu"))
as necessary.
Maintainer: ‘Emanuele Bevacqua <emanuele.bevacqua@uni-graz.at>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘atp_plot.Rd’ ‘bioscope_plot.Rd’ ‘energetics_lme_summary.Rd’
    ‘energetics_ols_summary.Rd’ ‘fit_lme.Rd’ ‘get_energetics.Rd’
    ‘get_energetics_summary.Rd’ ‘get_rate_summary.Rd’
    ‘make_bioscope_plot.Rd’ ‘normalize.Rd’ ‘partition_data.Rd’
    ‘pipelines.r’ ‘rate_plot.R’ ‘rate_plot.Rd’ ‘rates_lme_summary.Rd’
    ‘read_data.Rd’
Found the following files/directories:
  ‘figure01ceg.pdf’ ‘figure02ceg.pdf’ ‘staged.tree.graph.pdf’
  ‘stratified-event-tree-plot.pdf’
Maintainer: ‘Aaron Robotham <aaron.robotham@uwa.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aaron",
                    family = "Robotham",
                    role = c("aut", "cre"),
                    email = "aaron.robotham@uwa.edu.au")
as necessary.
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Molnar",
                    role = c("aut", "cre"),
                    email = "dmolnar100@icloud.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
aggregate.tracks 5.419  0.001   6.342
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ca_functions.r’ ‘plot.cellular_automata.Rd’
Maintainer: ‘Katharine M. Mullen <katharine.mullen@stat.ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Katharine", "M."),
                      family = "Mullen",
                      role = c("aut", "cre"),
                      email = "katharine.mullen@stat.ucla.edu"),
               person(given = "Michael",
                      family = "Halter",
                      role = "aut"),
               person(given = "John",
                      family = "Lu",
                      role = "aut"),
               person(given = "Nathan",
                      family = "Dodder",
                      role = "aut"))
as necessary.
Maintainer: ‘Jakob Raymaekers <jakob.raymaekers@kuleuven.be>’

The Description field contains
  (open access), Raymaekers and Rousseeuw (2022) <arXiv:2207.13493> (open
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Andre Fujita <andrefujita@usp.br>’

The Description field contains
  structures (Relvas C. & Fujita A., (2020) <arXiv:2004.02333>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
CenBAR 9.958  0.009  12.584
Maintainer: ‘Sy Han (Steven) Chiou <schiou@hsph.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jing",
                      family = "Qian",
                      role = "aut"),
               person(given = c("Sy", "Han"),
                      family = "Chiou",
                      role = "aut",
                      comment = "Steven"),
               person(given = c("Sy", "Han"),
                      family = "Chiou",
                      role = "cre",
                      email = "schiou@hsph.harvard.edu",
                      comment = "Steven"))
as necessary.
Maintainer: ‘Yan Li <YanLi_stats@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yan",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "yanli_stats@hotmail.com"),
               person(given = "Yang",
                      family = "Li",
                      role = "aut"),
               person(given = "Yichen",
                      family = "Qin",
                      role = "aut"),
               person(given = "Jun",
                      family = "yan",
                      role = "aut"))
as necessary.
Unexported objects imported by ':::' calls:
  ‘copula:::dCdu’ ‘copula:::fitCopStart’
  See the note in ?`:::` about the use of this operator.
Maintainer: ‘Arne Henningsen <arne.henningsen@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arne",
                    family = "Henningsen",
                    role = c("aut", "cre"),
                    email = "arne.henningsen@gmail.com")
as necessary.
Maintainer: ‘Alejandro Ordonez <ordonezjosealejandro@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alejandro",
                      family = "Ordonez",
                      role = c("aut", "cre"),
                      email = "ordonezjosealejandro@gmail.com"),
               person(given = c("Christian", "E."),
                      family = "Galarza",
                      role = "aut"),
               person(given = c("Victor", "H."),
                      family = "Lachos",
                      role = "aut"))
as necessary.
checkRd: (-1) call_api_once.Rd:36: Lost braces
    36 | A code{data.frame} with the requested variables at the requested
       |       ^
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
geom_cnt 4.372  0.128   5.112
Maintainer: ‘Mahdi Jalili <m_jalili@farabi.tums.ac.ir>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mahdi",
                    family = "Jalili",
                    role = c("aut", "cre"),
                    email = "m_jalili@farabi.tums.ac.ir")
as necessary.
checkRd: (-1) centroid.Rd:22: Lost braces; missing escapes or markup?
    22 | Centroid value C_{cen}(v) for node v defined as:
       |                  ^
checkRd: (-1) clusterrank.Rd:23: Lost braces; missing escapes or markup?
    23 | where the term f(c_{i}) accounts for the effect of i's local clustering and the term '+1' results from the contribution of \eqn{j}{j} itself. \cr
       |                    ^
Maintainer: ‘Duy Nghia Pham <nghiapham@yandex.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Benoit Liquet <b.liquet@uq.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tim",
                      family = "Benham",
                      role = "aut"),
               person(given = "Qibin",
                      family = "Duan",
                      role = "aut"),
               person(given = c("Dirk", "P."),
                      family = "Kroese",
                      role = "aut"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = c("aut", "cre"),
                      email = "b.liquet@uq.edu.au"))
as necessary.
Maintainer: ‘Mohit Dayal <mohitdayal2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mohit",
                    family = "Dayal",
                    role = c("aut", "cre"),
                    email = "mohitdayal2000@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘ce-hg.R’ ‘ce-mean.R’ ‘ce-prepdata.R’ ‘ce-quantiles.R’ ‘ce-uccs.R’
    ‘get-survey-files.R’ ‘read-expd.R’ ‘read-fmld.R’ ‘read-fmli.R’
    ‘read-mtbi.R’ ‘recode-ce-variables.R’
Maintainer: ‘Yijian Huang <yhuang5@emory.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yijian",
                    family = "Huang",
                    role = c("aut", "cre"),
                    email = "yhuang5@emory.edu")
as necessary.
checkRd: (-1) cequre.Rd:31: Lost braces; missing escapes or markup?
    31 |   {epsi}^{# regression coefficients} times the initial value,
       |   ^
checkRd: (-1) cequre.Rd:31: Lost braces; missing escapes or markup?
    31 |   {epsi}^{# regression coefficients} times the initial value,
       |          ^
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
calc_c_closure 5.825  0.185   7.324
Specified C++11: please drop specification unless essential
Maintainer: ‘Mengying Zhang <zhangmengying@hrbmu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mengying", "Zhang,Yongsheng", "Li,Juan", "Xu*,Xia"),
                      family = "Li*",
                      role = "aut"),
               person(given = "Mengying",
                      family = "Zhang",
                      role = "cre",
                      email = "zhangmengying@hrbmu.edu.cn"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘extraDoseLines.Rd’ ‘extraDoseNames.Rd’ ‘fixedEffect.Rd’
    ‘randomEffect.Rd’
Maintainer: ‘Diogo Ferrari <diogoferrari@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘James Balamuta <balamut2@illinois.edu>’

Found the following (possibly) invalid file URI:
  URI: RColorBrewer
    From: README.md

The Description field contains
  (2015) "Good Colour Maps: How to Design Them" <arXiv:1509.03700> at the
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Alireza S. Mahani <alireza.s.mahani@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Mansour", "T.A."),
                      family = "Sharabiani",
                      role = "aut"),
               person(given = c("Alireza", "S."),
                      family = "Mahani",
                      role = c("aut", "cre"),
                      email = "alireza.s.mahani@gmail.com"))
as necessary.
checkRd: (-1) cfc.tbasis.Rd:23: Lost braces
    23 | Assuming one-dimensional \code{p1} and \code{p2} for clarity, the algorithm calculates cumulative incidence function for cuase 1 using a recursive formula: \code{ci1[n+1] = ci1[n] + dci1[n]}, where \code{dci1[n] = 0.5*(p2[n] + p2[n+1])*(p1[n] - p1[n+1])}. The increment in cumulative incidence function for cause 2 is similarly calculated, \code{dci2[n] = 0.5*(p1[n] + p1[n+1])*(p2[n] - p2[n+1])}. These equations guarantee that \code{dci1[n] + dci2[n] = p1[n]*p2[n] - p1[n+1]*p2[n+1]}. Event-free probability is simply calculated as code{efp[n] = p1[n]*p2[n]}. Taken together, this numerical integration ensures that \code{efp[n+1] - efp[n] + dci1[n] + dci2[n] = 0}.
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ^
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
fbpRaster 4.344   0.01    5.39
Maintainer: ‘Santtu Tikka <santtuth@gmail.com>’

The Description field contains
  Pearl, J. (2007, 2008) <arXiv:1206.5294>,
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Yi Zhao <zhaoyi1026@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yi",
                      family = "Zhao",
                      role = c("aut", "cre"),
                      email = "zhaoyi1026@gmail.com"),
               person(given = "Xi",
                      family = "Luo",
                      role = "aut",
                      email = "xi.rossi.luo@gmail.com"),
               person(given = "Martin",
                      family = "Lindquist",
                      role = "aut",
                      email = "mal2053@gmail.com"),
               person(given = "Brian",
                      family = "Caffo",
                      role = "aut",
                      email = "bcaffo@gmail.com"))
as necessary.

File 'R/cfma-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.

The Description field contains
  to Functional Magnetic Resonance Imaging Data, <arXiv:1805.06923> for
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
lateonset.simu 6.003  0.047   8.020
CFO.oc         4.366  0.105   5.979
Maintainer: ‘Erick Verleye <erve3705@colorado.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  boot.cgaim.Rd: doParallel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Ahmadou Dicko <mail@ahmadoudicko.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "file",
                      family = "inst/AUTHORS",
                      role = "aut"),
               person(given = "Ahmadou",
                      family = "Dicko",
                      role = "cre",
                      email = "mail@ahmadoudicko.com"))
as necessary.
Maintainer: ‘Yu-chia Chang <curare7177@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Yuan-chin", "I."),
                      family = "Chang",
                      role = "aut"),
               person(given = "Yu-chia",
                      family = "Chang",
                      role = c("aut", "cre"),
                      email = "curare7177@gmail.com"),
               person(given = "Ling-wan",
                      family = "Chen",
                      role = "aut"))
as necessary.
Malformed Title field: should not end in a period.
Maintainer: ‘LI Wu <liwu@staff.shu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "LI",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "liwu@staff.shu.edu.cn")
as necessary.
Maintainer: ‘Arvid Sjolander <arvid.sjolander@ki.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Arvid",
                    family = "Sjolander",
                    role = c("aut", "cre"),
                    email = "arvid.sjolander@ki.se")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
cgmreport 3.762  0.199   5.662
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
CGManalyzer-package 4.095  0.447   6.588
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
newggslopegraph 4.537   0.19   5.488
Maintainer: ‘Shan Ba <shanbatr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shan",
                      family = "Ba",
                      role = c("aut", "cre"),
                      email = "shanbatr@gmail.com"),
               person(given = c("V.", "Roshan"),
                      family = "Joseph",
                      role = "aut"))
as necessary.
Maintainer: ‘Carl Witthoft <cellocgw@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carl",
                    family = "Witthoft",
                    role = c("aut", "cre"),
                    email = "cellocgw@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cpt.geo-class.Rd: ggplot2
  data.set.Rd: data.set-methods
  data.set_-.Rd: data.set<--methods
  pen.value.Rd: pen.value-methods
  pen.value_-.Rd: pen.value<--methods
  test.stat.Rd: test.stat-methods
  test.stat_-.Rd: test.stat<--methods
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Haotian Xu <haotian.xu@uclouvain.be>’

The Description field contains
  <arXiv:2006.03283>; 2) univariate polynomials:
  <doi:10.1214/20-AOS1953>, <arXiv:2101.05477>, <arXiv:2110.06450>; 6)
  high-dimensional linear regression models: <arXiv:2010.10410>,
  <arXiv:2207.12453>; 7) high-dimensional vector autoregressive models:
  <arXiv:1909.06359>; 8) high-dimensional self exciting point processes:
  <arXiv:2006.03572>; 9) dependent dynamic nonparametric random dot
  product graphs: <arXiv:1911.07494>; 10) univariate mean against
  adversarial attacks: <arXiv:2105.10417>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) Hausdorff.dist.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{vec1}{A \code{integer} vector forms a subset of {1, 2, ..., n}.}
       |                                                       ^
checkRd: (-1) Hausdorff.dist.Rd:12: Lost braces; missing escapes or markup?
    12 | \item{vec2}{A \code{integer} vector forms a subset of {1, 2, ..., n}.}
       |                                                       ^
checkRd: (-1) online.univar.multi.Rd:47-57: Lost braces
    47 | online.univar.one2 = function(y_vec, gamma, tau_gamma, ...){
       |                                                            ^
checkRd: (-1) online.univar.multi.Rd:50-55: Lost braces
    50 |   while(FLAG == 0 & t <= length(y_vec)){
       |                                        ^
checkRd: (-1) online.univar.multi.Rd:71-89: Lost braces
    71 | online.univar.one3 = function(y_vec, tau_vec, ...){
       |                                                   ^
checkRd: (-1) online.univar.multi.Rd:72-74: Lost braces
    72 |   if(length(y_vec) != length(tau_vec)){
       |                                       ^
checkRd: (-1) online.univar.multi.Rd:77-87: Lost braces
    77 |   while(FLAG == 0 & t <= length(y_vec)){
       |                                        ^
checkRd: (-1) online.univar.multi.Rd:81-86: Lost braces
    81 |     while(j < J & FLAG == 0){
       |                             ^
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
online.univar.multi 3.638  0.011   5.284
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  changepointsVar-package.Rd: lars
  jumpointsVar.Rd: lars
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hongyuan",
                      family = "Cao",
                      role = "aut"),
               person(given = c("Wei", "Biao"),
                      family = "Wu",
                      role = "aut"),
               person(given = c("Shannon", "T."),
                      family = "Holloway",
                      role = c("aut", "cre"),
                      email = "shannon.t.holloway@gmail.com"))
as necessary.
Maintainer: ‘Davide Altomare <davide.altomare@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Davide",
                    family = "Altomare",
                    role = c("aut", "cre"),
                    email = "davide.altomare@gmail.com")
as necessary.
Maintainer: ‘Marco Tschimpke <marco.tschimpke@plus.ac.at>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Thimo",
                      family = "Kasper",
                      role = "aut",
                      email = "thimo.kasper@plus.ac.at"),
               person(given = "Florian",
                      family = "Griessenberger",
                      role = "aut",
                      email = "florian.griessenberger@plus.ac.at"),
               person(given = "Manuela",
                      family = "Schreyer",
                      role = "aut",
                      email = "manuelalarissa.schreyer@sbg.ac.at"),
               person(given = "Johannes",
                      family = "Bartel",
                      role = "aut"),
               person(given = "Wolfgang",
                      family = "Trutschnig",
                      role = "aut",
                      email = "Wolfgang.Trutschnig@sbg.ac.at"),
               person(given = "Marco",
                      family = "Tschimpke",
                      role = "cre",
                      email = "marco.tschimpke@plus.ac.at"))
as necessary.
checkRd: (-1) cql.Rd:28: Lost braces; missing escapes or markup?
    28 | {X} \code{<x_var>, <(x_facet)>}: \tab\tab\tab\tab  X-axis variable. May include a second categorical\cr
       | ^
checkRd: (-1) cql.Rd:30: Lost braces; missing escapes or markup?
    30 | {Y} \code{<y_var>}: \tab\tab\tab\tab Y-axis variable. *Not used for \code{hist}.\cr
       | ^
checkRd: (-1) cql.Rd:38: Lost braces; missing escapes or markup?
    38 | {Y_label} \code{'<ylab>'}: \tab\tab\tab\tab  Y-axis custom label. Defaults to <y_var>\cr
       | ^
checkRd: (-1) cql.Rd:39: Lost braces; missing escapes or markup?
    39 | {Legend} \code{'<legend>'}: \tab\tab\tab\tab  Legend custom label. Defaults to <x_category>\cr
       | ^
checkRd: (-1) cql.Rd:40: Lost braces; missing escapes or markup?
    40 | {Colorset} \code{'<clist>'}: \tab\tab\tab\tab  Custom set of colors for <x_category> levels.\cr
       | ^
checkRd: (-1) cql.Rd:42: Lost braces; missing escapes or markup?
    42 | {AggFunc} \code{'<func>'}: \tab\tab\tab\tab Summary function for \code{bar} type.\cr
       | ^
checkRd: (-1) cql.Rd:45: Lost braces; missing escapes or markup?
    45 | {Fit} \code{'<show_se>'}: \tab\tab\tab\tab Valid types: \code{true|false}. Fit quadratic line.\cr
       | ^
checkRd: (-1) cql.Rd:47: Lost braces; missing escapes or markup?
    47 | {ConfInt} \code{'<interval>'}: \tab\tab\tab\tab  Show error bars. Value is confidence interval value. E.g. '.95'
       | ^
checkRd: (-1) create_unit_tests.Rd:17: Lost braces; missing escapes or markup?
    17 | Create `{testthat}` test cases for the code.
       |         ^
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘check_hint.R’ ‘check_hints.R’ ‘check_question.R’ ‘insert_audio.R’
File ‘checkmate/libs/checkmate.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  checkpoint.Rd: pkgdepends
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Lawrence Hudson <quicklizard@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Lawrence", "Hudson", "with", "contributions", "from", "Dan"),
                      family = "Reuman",
                      role = "aut"),
               person(given = "Rob",
                      family = "Emerson",
                      role = "aut"),
               person(given = "Lawrence",
                      family = "Hudson",
                      role = "cre",
                      email = "quicklizard@googlemail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pipe.Rd: magrittr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
chem16S-data         4.745  0.411   5.588
phyloseq_integration 4.975  0.164   6.509
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
pcaCV 4.502      0   6.363
Maintainer: ‘Haitian Xie <xht@gsm.pku.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haitian",
                    family = "Xie",
                    role = c("aut", "cre"),
                    email = "xht@gsm.pku.edu.cn")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
chest_plot  5.6   0.03   6.457
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
fill.in.zeros 5.613  0.276   6.082
Maintainer: ‘Stef van Buuren <stef.vanbuuren@tno.nl>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
generar_regiones 3.865  0.021   5.084
Maintainer: ‘Stefan Roediger <stefan.roediger@b-tu.de>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) C316.amp.Rd:28-32: Lost braces
    28 |     40 x {
       |          ^
checkRd: (-1) C317.amp.Rd:28-32: Lost braces
    28 |     40 x {
       |          ^
checkRd: (-1) C60.amp.Rd:63-67: Lost braces
    63 |     40 x {
       |          ^
Unknown package ‘qpcR’ in Rd xrefs
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
capillaryPCR 4.538    0.2   5.962
Maintainer: ‘Kauê de Sousa <kaue.desousa@inn.no>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  chkpt_brms.Rd: brms
  make_brmsfit.Rd: brms
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Package unavailable to check Rd xrefs: ‘cmdstanr’
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
chngptm 4.254  0.007    5.29
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘closestdist_gcms.Rd’ ‘compare_gcms.R’ ‘compare_gcms.Rd’
    ‘cor_gcms.Rd’ ‘dist_gcms.Rd’ ‘env_gcms.Rd’ ‘flatten_gcms.Rd’
    ‘hclust_gcms.Rd’ ‘kmeans_gcms.R’ ‘kmeans_gcms.Rd’
    ‘montecarlo_gcms.Rd’ ‘optk_gcms.Rd’ ‘summary_gcms.Rd’
    ‘transform_gcms.R’ ‘transform_gcms.Rd’
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
compare_gcms    7.053  0.201   8.831
montecarlo_gcms 4.539  0.043   5.368
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "P."),
                    family = "Fay",
                    role = c("aut", "cre"),
                    email = "mfay@niaid.nih.gov")
as necessary.
Maintainer: ‘Axel Gandy <a.gandy@imperial.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Axel",
                      family = "Gandy",
                      role = c("aut", "cre"),
                      email = "a.gandy@imperial.ac.uk"),
               person(given = c("F.", "Din-Houn"),
                      family = "Lau",
                      role = "aut"))
as necessary.
Maintainer: ‘Jonathan Rosenblatt <johnros@bgu.ac.il>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jonathan",
                    family = "Rosenblatt",
                    role = c("aut", "cre"),
                    email = "johnros@bgu.ac.il")
as necessary.
Maintainer: ‘Ari Lamstein <ari@lamsteinconsulting.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ari",
                    family = "Lamstein",
                    role = c("aut", "cre"),
                    email = "ari@lamsteinconsulting.com")
as necessary.
Maintainer: ‘Ari Lamstein <ari@lamsteinconsulting.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ari",
                    family = "Lamstein",
                    role = c("aut", "cre"),
                    email = "ari@lamsteinconsulting.com")
as necessary.
Maintainer: ‘Matthieu Herrmann <matthieu.herrmann@monash.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Hailong Chai <chaihl17@lzu.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hailong",
                    family = "Chai",
                    role = c("aut", "cre"),
                    email = "chaihl17@lzu.edu.cn")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Ryacas-all.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ggpng.Rd: ggsave
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Author field differs from that derived from Authors@R
  Author:    ‘Garrick Aden-Buie [aut, cre] (<https://orcid.org/0000-0002-7111-0077>), Winston Chang [aut], Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (03wc8by49)’
  Authors@R: ‘Garrick Aden-Buie [aut, cre] (ORCID: <https://orcid.org/0000-0002-7111-0077>), Winston Chang [aut], Barret Schloerke [aut] (ORCID: <https://orcid.org/0000-0001-9986-114X>), Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bind_record.Rd’ ‘chronicle.R’ ‘fmap_record.Rd’
    ‘grapes-greater-than-equals-grapes.Rd’ ‘pick.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  insert_chunkwise_into.Rd: tbl
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
checkRd: (-1) chunker-methods.Rd:63: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) chunker-methods.Rd:64: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) chunker-methods.Rd:69: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) chunker-methods.Rd:70: Lost braces in \enumerate; meant \describe ?
Maintainer: ‘William Nickols <willnickols@college.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "William",
                    family = "Nickols",
                    role = c("aut", "cre"),
                    email = "willnickols@college.harvard.edu")
as necessary.
Maintainer: ‘Juris Meija <juris.meija@nrc-cnrc.gc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juris",
                      family = "Meija",
                      role = c("aut", "cre"),
                      email = "juris.meija@nrc-cnrc.gc.ca"),
               person(given = "Antonio",
                      family = "Possolo",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘abundances2ratios.Rd’:
    http://dx.doi.org/10.1088/0026-1394/45/4/012
    https://doi.org/10.1088/1681-7575/aa634d
  File ‘at.weight.Rd’:
    http://dx.doi.org/10.1088/0026-1394/45/1/008
    https://doi.org/10.1088/1681-7575/aa634d
  File ‘ciaaw.mass.2012.Rd’:
    https://doi.org/10.1088/1674-1137/41/3/030003
  File ‘ciaaw.mass.2016.Rd’:
    https://doi.org/10.1088/1674-1137/41/3/030003
  File ‘mmm.Rd’:
    http://dx.doi.org/10.1002/sim.6789
    https://doi.org/10.1088/1681-7575/aa634d
  File ‘normalize.ratios.Rd’:
    http://dx.doi.org/10.1088/0026-1394/45/1/008
    https://doi.org/10.1088/1681-7575/aa634d
Maintainer: ‘Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabriele",
                    family = "Lubatti",
                    role = c("aut", "cre"),
                    email = "gabriele.lubatti@helmholtz-muenchen.de")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
PlotCumulativeMeanTrace 2.324  0.079   6.929
CollectUniqueObjects    0.024  0.008   6.196
PostProcessChains       0.019  0.001   7.741
Maintainer: ‘Jeffrey Durieux <durieux.jeffrey@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeffrey",
                      family = "Durieux",
                      role = c("aut", "cre"),
                      email = "durieux.jeffrey@gmail.com"),
               person(given = "Tom",
                      family = "Wilderjans",
                      role = "aut"),
               person(given = c("Juan", "Claramunt"),
                      family = "Gonzalez",
                      role = "ctb"))
as necessary.
Maintainer: ‘Sokbae Lee <sl3841@columbia.edu>’

The Description field contains
  <arXiv:2004.08318 [econ.EM]>, accepted for publication in Journal of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
AAA_DML 4.472  0.649   6.578
Maintainer: ‘Stefan Konigorski <stefan.konigorski@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Dadong Zhang <dzhang4@illumina.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dadong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "dzhang4@illumina.com"),
               person(given = "Jingye",
                      family = "Wang",
                      role = "aut",
                      email = "jwang16@illumina.com"),
               person(given = "Suqin",
                      family = "Cai",
                      role = "aut",
                      email = "scai1@illumina.com"),
               person(given = "Johan",
                      family = "Surtihadi",
                      role = "aut",
                      email = "jsurtihadi@illumina.com"))
as necessary.
checkRd: (-1) ec.datalag.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{prepares Dy y_1 Dy_1 ... Dy_{nlag-1} for estimation}
       |                                    ^
checkRd: (-1) ec.datalag.Rd:15: Lost braces
    15 | ymat contains the folloiwing columns {Dy y_1 Dy_1 ... Dy_{nlag-1}}
       |                                      ^
checkRd: (-1) ec.datalag.Rd:15: Lost braces; missing escapes or markup?
    15 | ymat contains the folloiwing columns {Dy y_1 Dy_1 ... Dy_{nlag-1}}
       |                                                          ^
checkRd: (-1) lagn.Rd:21: Lost braces; missing escapes or markup?
    21 |              REM: alternative to "lead-lag" {dplyr} which applies to vector y
       |                                             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘long_est.R’
Maintainer: ‘Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Aurelie",
                      family = "Siberchicot",
                      role = c("aut", "cre"),
                      email = "aurelie.siberchicot@univ-lyon1.fr"),
               person(given = "Adrien",
                      family = "Merville",
                      role = "aut"),
               person(given = "Marie-Claude",
                      family = "Bel-Venner",
                      role = "aut"),
               person(given = "Samuel",
                      family = "Venner",
                      role = "aut"))
as necessary.
Maintainer: ‘Vishal H. Oza <vishoza@uab.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Vishal", "H."),
                      family = "Oza",
                      role = c("aut", "cre"),
                      email = "vishoza@uab.edu"),
               person(given = "Roshan",
                      family = "Darji",
                      role = "aut"),
               person(given = c("Brittany", "N."),
                      family = "Lasseigne",
                      role = "aut"))
as necessary.
Maintainer: ‘Toshiaki Ara <toshiaki.ara@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Toshiaki",
                    family = "Ara",
                    role = c("aut", "cre"),
                    email = "toshiaki.ara@gmail.com")
as necessary.
checkRd: (-1) CIplot.Rd:58: Lost braces; missing escapes or markup?
    58 | \item{las}{numeric in {0,1,2,3}; the style of axis labels.
       |                       ^
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
plot.CIps 4.488  0.111   5.250
CIps      4.074  0.098   5.058
lmps      4.064  0.071   5.027
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘functions.R’
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
remove_cardinal_biases 9.413  0.438   9.943
Maintainer: ‘Robert Fitak <rfitak9@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Maria Mercedes Gregorio-Dominguez <mercedes@itam.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Juan", "Jose"),
                      family = "Fernandez-Duran",
                      role = "aut"),
               person(given = c("Maria", "Mercedes"),
                      family = "Gregorio-Dominguez",
                      role = c("aut", "cre"),
                      email = "mercedes@itam.mx"))
as necessary.
Maintainer: ‘Azade Ghazanfarihesari <azade_ghazanfari@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Azade",
                      family = "Ghazanfarihesari",
                      role = c("aut", "cre"),
                      email = "azade_ghazanfari@yahoo.com"),
               person(given = c("Majid", "Sarmad-", "Ferdowsi", "University", "Of"),
                      family = "Mashhad",
                      role = "aut"))
as necessary.
Maintainer: ‘Mario Santoro <santoro.ma@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/santoroma/CircSpaceTime
which should likely be
  https://github.com/santoroma/CircSpaceTime/issues
instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Claudio Agostinelli <claudio.agostinelli@unitn.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S-plus", "original", "by", "Ulric"),
                      family = "Lund",
                      role = "aut",
                      email = "ulund@calpoly.edu"),
               person(given = c("R", "port", "by", "Claudio"),
                      family = "Agostinelli",
                      role = "aut",
                      email = "claudio.agostinelli@unitn.it"),
               person(given = "Claudio",
                      family = "Agostinelli",
                      role = "cre",
                      email = "claudio.agostinelli@unitn.it"))
as necessary.
checkRd: (-1) rstable.Rd:42: Lost braces
    42 | Lo\"{g}ae\"{v}e, M. (1977). Probability Theory I. (fourth edition) Springer-Verlag, New York.
       |     ^
checkRd: (-1) rstable.Rd:42: Lost braces
    42 | Lo\"{g}ae\"{v}e, M. (1977). Probability Theory I. (fourth edition) Springer-Verlag, New York.
       |            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  circ.plot.Rd: eqscplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Evandro Konzen <circularev.r@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Evandro",
                    family = "Konzen",
                    role = c("aut", "cre"),
                    email = "circularev.r@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cirls.fit.Rd’ ‘confint.cirls.Rd’
Maintainer: ‘James Joseph Balamuta <balamut2@illinois.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Maintainer: ‘Marek Gagolewski <marek@gagolewski.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  dbExecQuery.Rd: dbSendQuery, dbClearResult, dbGetQuery
  lbsClear.Rd: dbCommit, dbRollback
  lbsDeleteAllAuthorsDocuments.Rd: dbCommit, dbRollback
  lbsTidy.Rd: dbCommit, dbRollback
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Neal Haddaway <nealhaddaway@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) data_generator.Rd:93: Lost braces; missing escapes or markup?
    93 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                     ^
checkRd: (-1) data_generator.Rd:93: Lost braces; missing escapes or markup?
    93 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                             ^
checkRd: (-1) data_generator.Rd:95: Lost braces; missing escapes or markup?
    95 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++}, S_{*+}
       |                                                                 ^
checkRd: (-1) data_generator.Rd:95: Lost braces; missing escapes or markup?
    95 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++}, S_{*+}
       |                                                                         ^
checkRd: (-1) data_generator_loop.Rd:96: Lost braces; missing escapes or markup?
    96 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                     ^
checkRd: (-1) data_generator_loop.Rd:96: Lost braces; missing escapes or markup?
    96 |   \item{estimand_mean}{List of means of the FULL, S_{++}, S_{*+} and
       |                                                             ^
checkRd: (-1) data_generator_loop.Rd:98: Lost braces; missing escapes or markup?
    98 |   \item{estimand_sd}{List of standard deviations of the FULL, S_{++},
       |                                                                 ^
checkRd: (-1) data_generator_loop.Rd:99: Lost braces; missing escapes or markup?
    99 |   S_{*+} and PP estimands}
       |     ^
Maintainer: ‘Kary Främling <Kary.Framling@umu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kary",
                    family = "Främling",
                    role = c("aut", "cre"),
                    email = "kary.framling@umu.se")
as necessary.

The Description field contains
  e.g. Främling (2020) <arXiv:2009.13996>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) ciu.ggplot.col.Rd:41: Lost braces; missing escapes or markup?
    41 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
checkRd: (-1) ciu.meta.explain.Rd:27: Lost braces; missing escapes or markup?
    27 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
checkRd: (-1) ciu.meta.result.new.Rd:30: Lost braces; missing escapes or markup?
    30 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
checkRd: (-1) ciu.textual.Rd:38: Lost braces; missing escapes or markup?
    38 | \item{ind.inputs}{Indices of input features to explain (the set {i} in CIU
       |                                                                 ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CivisFuture.Rd: Future
  civis_platform.Rd: future, plan
  write_civis_file.Rd: plan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Thomas Wiemann <wiemann@uchicago.edu>’

The Description field contains
  proposed by Wiemann (2023) <arXiv:2311.17021>. CIV allows for optimal
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Stefan Konigorski <stefan.konigorski@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Raphiel Murden <rmurden@emory.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
GenerateToyData 4.118  0.054   5.249
Maintainer: ‘Anton Strezhnev <astrezhnev@uchicago.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Soubhik",
                      family = "Barari",
                      role = "aut"),
               person(given = "Elissa",
                      family = "Berwick",
                      role = "aut"),
               person(given = "Jens",
                      family = "Hainmueller",
                      role = "aut"),
               person(given = "Daniel",
                      family = "Hopkins",
                      role = "aut"),
               person(given = "Sean",
                      family = "Liu",
                      role = "aut"),
               person(given = "Anton",
                      family = "Strezhnev",
                      role = c("aut", "cre"),
                      email = "astrezhnev@uchicago.edu"),
               person(given = "Teppei",
                      family = "Yamamoto",
                      role = "aut"))
as necessary.
Maintainer: ‘Hong Zhang <hzhang@wpi.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@wpi.edu"),
               person(given = "Judong",
                      family = "Shen",
                      role = "aut"))
as necessary.
Maintainer: ‘Haoyu Zhang <andrew.haoyu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ni",
                      family = "Zhao",
                      role = "aut"),
               person(given = "Haoyu",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "andrew.haoyu@gmail.com"))
as necessary.
Maintainer: ‘Eric C. Anderson <eric.anderson@noaa.gov>’

The Description field contains
  (<https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1471-8286.2005.00884.x>),
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
Maintainer: ‘Jonathan M. Lees<jonathan.lees@unc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jonathan", "M."),
                    family = "Lees",
                    role = c("aut", "cre"),
                    email = "jonathan.lees@unc.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compute_cluster_composition.R’ ‘extract_ids_vector.R’
    ‘perform_clustering.R’
Maintainer: ‘Gaurav Sood <gsood07@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) get_langs.Rd:13: Lost braces
    13 | character vector listing all the languages that tag API call supports. See \code{\link{tag_images}} and code{\link{tag_image_urls}}
       |                                                                                                             ^
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
sim_adrf 5.078  0.157   6.428
Maintainer: ‘Martin Maechler <maechler@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Martin", "Maechler", "partly", "based", "on", "code", "from", "Robert"),
                      family = "Gentleman",
                      role = "aut"),
               person(given = "Martin",
                      family = "Maechler",
                      role = "cre",
                      email = "maechler@stat.math.ethz.ch"))
as necessary.
Maintainer: ‘Hadley Wickham <h.wickham@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Hadley",
                    family = "Wickham",
                    role = c("aut", "cre"),
                    email = "h.wickham@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  generate_classification_data.Rd: knn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jakob Raymaekers <jakob.raymaekers@kuleuven.be>’

The Description field contains
  and tree-based classifiers, <arXiv:2106.08814>. Examples can be found
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Brian Ripley <Brian.Ripley@R-project.org>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Chris J. Lloyd <c.lloyd@mbs.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Chris", "J."),
                    family = "Lloyd",
                    role = c("aut", "cre"),
                    email = "c.lloyd@mbs.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘as_raster.Rd’ ‘clc.R’ ‘clc_category.R’ ‘clc_raster.R’ ‘copy_to.Rd’
    ‘cut_to_extent.Rd’ ‘get_colors.Rd’ ‘get_levels.Rd’ ‘get_raster.Rd’
    ‘plot_clc.Rd’ ‘prepare_plot.Rd’ ‘save_to.Rd’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
as_raster 5.023  0.232   7.521
Maintainer: ‘Florencia I. Pozzi <florenciapoz@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Florencia", "I."),
                      family = "Pozzi",
                      role = c("aut", "cre"),
                      email = "florenciapoz@hotmail.com"),
               person(given = c("Silvina", "A."),
                      family = "Felitti",
                      role = "aut"))
as necessary.
Maintainer: ‘Sherry Zhao <sxzhao@gwu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Sherry",
                    family = "Zhao",
                    role = c("aut", "cre"),
                    email = "sxzhao@gwu.edu")
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Karim Mané [aut, cre] (<https://orcid.org/0000-0002-9892-2999>), Thibaut Jombart [ctb] (Thibault contributed in development of date_guess().), Abdoelnaser Degoot [aut] (<https://orcid.org/0000-0001-8788-2496>), Bankolé Ahadzie [aut], Nuredin Mohammed [aut], Bubacarr Bah [aut] (<https://orcid.org/0000-0003-3318-6668>), Hugo Gruson [ctb, rev] (<https://orcid.org/0000-0002-4094-1476>), Pratik R. Gupte [rev] (<https://orcid.org/0000-0001-5294-7819>), James M. Azam [rev] (<https://orcid.org/0000-0001-5782-7330>), Joshua W. Lambert [rev] (<https://orcid.org/0000-0001-5218-3046>), Chris Hartgerink [rev] (<https://orcid.org/0000-0003-1050-6809>), Andree Valle-Campos [rev, ctb] (<https://orcid.org/0000-0002-7779-481X>), London School of Hygiene and Tropical Medicine, LSHTM [cph] (00a0jsq62), data.org [fnd]’
  Authors@R: ‘Karim Mané [aut, cre] (ORCID: <https://orcid.org/0000-0002-9892-2999>), Thibaut Jombart [ctb] (Thibault contributed in development of date_guess().), Abdoelnaser Degoot [aut] (ORCID: <https://orcid.org/0000-0001-8788-2496>), Bankolé Ahadzie [aut], Nuredin Mohammed [aut], Bubacarr Bah [aut] (ORCID: <https://orcid.org/0000-0003-3318-6668>), Hugo Gruson [ctb, rev] (ORCID: <https://orcid.org/0000-0002-4094-1476>), Pratik R. Gupte [rev] (ORCID: <https://orcid.org/0000-0001-5294-7819>), James M. Azam [rev] (ORCID: <https://orcid.org/0000-0001-5782-7330>), Joshua W. Lambert [rev] (ORCID: <https://orcid.org/0000-0001-5218-3046>), Chris Hartgerink [rev] (ORCID: <https://orcid.org/0000-0003-1050-6809>), Andree Valle-Campos [rev, ctb] (ORCID: <https://orcid.org/0000-0002-7779-481X>), London School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR: <https://ror.org/00a0jsq62>), data.org [fnd]’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
scan_data 4.566  0.078   5.422
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
cv11_vca_by_median 7.984  0.272   9.534
cv25_qbinom_ppu    6.721  0.064   7.806
cv26_qpoisson_ppu  4.921  0.036   5.635
Maintainer: ‘Taylor B. Arnold <tarnold2@richmond.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Taylor", "B."),
                    family = "Arnold",
                    role = c("aut", "cre"),
                    email = "tarnold2@richmond.edu")
as necessary.
Maintainer: ‘Pierre Roudier <roudierp@landcareresearch.co.nz>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Specified C++11: please drop specification unless essential
Problems with news in ‘NEWS.md’:
  Cannot extract version info from the following section titles:
    clhs_0.7-2
    clhs_0.7-0
    clhs_0.6-0
    clhs_0.5-7
    clhs_0.5-6
    clhs_0.5-3
    clhs_0.5-2
    clhs_0.5-1
    clhs_0.5-0
    clhs_0.4-3
    clhs_0.4-2
    clhs_0.4-1
    clhs_0.4-0
    clhs_0.3-2
    clhs_0.3-1
    clhs_0.3-0
    clhs_0.2-1
    clhs_0.2-0
    clhs_0.1-0
Maintainer: ‘Michael P.B. Gallaugher <gallaump@mcmaster.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Michael", "P.B."),
                      family = "Gallaugher",
                      role = c("aut", "cre"),
                      email = "gallaump@mcmaster.ca"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1802.04849>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ClickHouseHTTPConnection-class.Rd: dbConnect
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael Scholz <michael.scholz@th-deg.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Michael",
                      family = "Scholz",
                      role = c("aut", "cre"),
                      email = "michael.scholz@th-deg.de"),
               person(given = "Theo",
                      family = "van Kraay",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  fitMarkovChain.Rd: Rsolnp
  frequencies.Rd: transactions
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘horner.Rd’
checkRd: (-1) cf_save_kml.Rd:68: Lost braces
    68 | \code{\link{cf_find_station}} and code{vignette("choose-station")} for
       |                                       ^
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
liftHurstCC 4.872  0.051   5.657
liftHurstC  4.273  0.098   5.608
Maintainer: ‘Yanming Li <liyanmin@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yanming",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "liyanmin@umich.edu"),
               person(given = "Kerby",
                      family = "Shedden",
                      role = "aut"),
               person(given = c("Brenda", "W."),
                      family = "Gillespie",
                      role = "aut"),
               person(given = c("John", "A."),
                      family = "Gillespie",
                      role = "aut"))
as necessary.

File 'R/clikcorr-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Hannah Owens <hannah.owens@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Jose A. Guijarro <jaguijarro21@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jose", "A."),
                    family = "Guijarro",
                    role = c("aut", "cre"),
                    email = "jaguijarro21@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
dahgrid 7.433  0.243   9.325
Maintainer: ‘Kauê de Sousa <desousa.kaue@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Xi (Rossi) Luo <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("T.", "Tony"),
                      family = "Cai",
                      role = "aut"),
               person(given = "Weidong",
                      family = "Liu",
                      role = "aut"),
               person(given = "Xi",
                      family = "Luo",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Xi",
                      family = "Luo",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.
Maintainer: ‘Fergus Reig-Gracia <fergusrg@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Fergus",
                      family = "Reig-Gracia",
                      role = c("aut", "cre"),
                      email = "fergusrg@gmail.com"),
               person(given = c("Sergio", "M."),
                      family = "Vicente-Serrano",
                      role = "aut"),
               person(given = "Fernando",
                      family = "Dominguez-Castro",
                      role = "aut"),
               person(given = "Joaquin",
                      family = "Bedia-Jiménez",
                      role = "ctb"))
as necessary.
Maintainer: ‘Liam D. Bailey <liam.bailey@liamdbailey.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Liam", "D."),
                      family = "Bailey",
                      role = c("aut", "cre"),
                      email = "liam.bailey@liamdbailey.com"),
               person(given = "Martijn",
                      family = "van de Pol",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
scatterplotClinData 6.532  0.157   9.104
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  clinDR-package.Rd: DoseFinding
  emaxsim.Rd: Mods
  emaxsimB.Rd: Mods
  fitEmaxB.Rd: rstan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘calc_rci.R’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
cs_anchor 4.049  0.201   5.057
Maintainer: ‘Daewoo Pak <heavyrain.pak@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Daewoo",
                      family = "Pak",
                      role = c("aut", "cre"),
                      email = "heavyrain.pak@gmail.com"),
               person(given = "Song",
                      family = "Yang",
                      role = "aut"))
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘ClinicalTrialSummary-package.Rd’:
    \keyword{Survival analysis, Clinical trials, Hazar [TRUNCATED]
Maintainer: ‘Anu Mishra <anmishra@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anu",
                    family = "Mishra",
                    role = c("aut", "cre"),
                    email = "anmishra@uw.edu")
as necessary.
Maintainer: ‘Mike Malek-Ahmadi <michael.malekahmadi@bannerhealth.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mike",
                      family = "Malek-Ahmadi",
                      role = c("aut", "cre"),
                      email = "michael.malekahmadi@bannerhealth.com"),
               person(given = "Kjera",
                      family = "Schack",
                      role = "aut",
                      email = "kgschack@asu.edu"))
as necessary.
Maintainer: ‘Jim Lemon <drjimlemon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Lemon,",
                      role = "aut",
                      email = "drjimlemon@gmail.com"),
               person(given = "Jim",
                      family = "Lemon",
                      role = "cre",
                      email = "drjimlemon@gmail.com"))
as necessary.
checkRd: (-1) clinsig.Rd:129: Lost braces
   129 |  be calculated with the measures specified in samp{mct} and samp{disp},
       |                                                   ^
checkRd: (-1) clinsig.Rd:129: Lost braces
   129 |  be calculated with the measures specified in samp{mct} and samp{disp},
       |                                                                 ^
Maintainer: ‘Karandeep Singh <kdpsingh@umich.edu>’

The Description field contains
  embeddings developed by Beam (2018) <arXiv:1804.01486>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  knitPrintListObjects.Rd: knitr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Neel Agarwal <neel.agarwal.216@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Neel",
                    family = "Agarwal",
                    role = c("aut", "cre"),
                    email = "nxa357@case.edu")
as necessary.
Maintainer: ‘Jens Lange <lange.jens@outlook.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Casey M. Jelsema <jelsema.casey@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Haolun Shi <shl2003@connect.hku.hk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Haolun",
                      family = "Shi",
                      role = c("aut", "cre"),
                      email = "shl2003@connect.hku.hk"),
               person(given = "Guosheng",
                      family = "Yin",
                      role = "aut"))
as necessary.
Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephen",
                      family = "Reid",
                      role = c("aut", "cre"),
                      email = "sreid1652@gmail.com"),
               person(given = "Robert",
                      family = "Tibshirani",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) print.clogitL1.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) print.clogitL1.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) print.clogitL1.Rd:23: Lost braces in \itemize; meant \describe ?
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cloud_drive_download_bulk.Rd’ ‘cloud_drive_read_bulk.Rd’
    ‘cloud_drive_upload_bulk.Rd’ ‘cloud_drive_write_bulk.Rd’
    ‘cloud_s3_download_bulk.Rd’ ‘cloud_s3_read_bulk.Rd’
    ‘cloud_s3_upload_bulk.Rd’ ‘cloud_s3_write_bulk.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cloudml_train.Rd: flags
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) cb_participant_count.Rd:13: Lost braces
    13 | \item{query}{A phenotype query defined using the code{\link{phenotype}} function and logic operators (see example below)}
       |                                                      ^
checkRd: (-1) phenotype.Rd:10: Lost braces
    10 | \item{id}{A single phenotype id. Possible phenotyoes can be explored using the code{\link{cb_search_phenotypes}} function}
       |                                                                                    ^
Maintainer: ‘Christian Panse <cp@fgcz.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christian",
                      family = "Panse",
                      role = c("aut", "cre"),
                      email = "cp@fgcz.ethz.ch"),
               person(given = "Ermir",
                      family = "Qeli",
                      role = "aut",
                      email = "ermir.qeli@gmail.com"))
as necessary.
Maintainer: ‘Amandine Pierrot <amandine.m.pierrot@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Amandine", "Pierrot", "with", "contributions", "and/or", "help", "from", "Qiwei"),
                      family = "Yao",
                      role = "aut"),
               person(given = "Haeran",
                      family = "Cho",
                      role = "aut"),
               person(given = "Yannig",
                      family = "Goude",
                      role = "aut"),
               person(given = "Tony",
                      family = "Aldon.",
                      role = "aut"),
               person(given = "Amandine",
                      family = "Pierrot",
                      role = "cre",
                      email = "amandine.m.pierrot@gmail.com"))
as necessary.
checkRd: (-1) clr.Rd:24: Lost braces
    24 | the sense that its Karhunen-Lo\`{e}ve decomposition has qx terms only.}
       |                                 ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘bias_df_combined.R’ ‘create_table_ep_15.R’
    ‘precision_calculate_aov_info.R’
Maintainer: ‘Simiao Ye <simiao.ye@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Simiao",
                      family = "Ye",
                      role = c("aut", "cre"),
                      email = "simiao.ye@gmail.com"),
               person(given = "Jingning",
                      family = "Mei",
                      role = "aut"))
as necessary.
Maintainer: ‘Pengyi Yang <yangpy7@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Pengyi",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "yangpy7@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
runClue 5.424   0.34   5.699
Maintainer: ‘Jan Fojtik <9afojtik@gmail.com>’

The Description field contains
  Sobisek, Stachova, Fojtik (2018) <arXiv:1807.05926>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Emmanuel S Tsyawo <estsyawo@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Emmanuel", "S"),
                      family = "Tsyawo",
                      role = c("aut", "cre"),
                      email = "estsyawo@temple.edu"),
               person(given = "Abdul-Nasah",
                      family = "Soale",
                      role = "aut"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.clusEvol.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Matthieu Marbac <matthieu.marbac-lourdelle@ensai.fr>’

The Description field contains
  Marbac et al. (2020) <arXiv:2012.14159> are implemented.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Duc-Khanh To <toduc@stat.unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Duc-Khanh",
                      family = "To",
                      role = c("aut", "cre"),
                      email = "toduc@stat.unipd.it",
                      comment = c(ORCID = "0000-0002-4641-0764")),
               person(given = c("with", "contributions", "from", "Gianfranco"),
                      family = "Adimari"),
               person(given = "Monica",
                      family = "Chiogna"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.clus_lme.Rd: ggexport
  plot.clus_opt_thres3.Rd: ggexport
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
clus_opt_thres3 4.67  0.082   5.675
Maintainer: ‘Martí Renedo Mirambell <marti.renedo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Martí", "Renedo"),
                    family = "Mirambell",
                    role = c("aut", "cre"),
                    email = "marti.renedo@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                                                   user system elapsed
plot_n_neigh_ecs                                  8.599  0.292  12.505
plot_n_neigh_k_correspondence                     8.643  0.202  11.606
plot_feature_per_resolution_stability_incremental 8.077  0.014  11.857
plot_feature_overall_stability_incremental        7.941  0.011  12.776
assess_nn_stability                               7.728  0.088   9.300
plot_feature_stability_mb_facet                   4.895  0.171   7.478
plot_feature_stability_ecs_facet                  4.653  0.116   6.348
assess_clustering_stability                       3.862  0.266   5.795
plot_feature_per_resolution_stability_boxplot     4.096  0.004   6.072
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
netplot_ClusTCR2 7.334  0.034   7.954
ClusTCR          5.816  0.766   7.884
motif_plot       6.280  0.114   6.812
mcl_cluster      5.987  0.303   6.665
Maintainer: ‘Mathijs Deen <m.l.deen@fsw.leidenuniv.nl>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Frederick Novomestky <fnovomes@poly.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Frederick",
                    family = "Novomestky",
                    role = c("aut", "cre"),
                    email = "fnovomes@poly.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  dissmutmatrix.Rd: dissplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Weiliang Qiu <weiliang.qiu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Weiliang",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "weiliang.qiu@gmail.com"),
               person(given = "Harry",
                      family = "Joe.",
                      role = "aut",
                      email = "harry@stat.ubc.ca"))
as necessary.
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gaston",
                      family = "Quero",
                      role = c("aut", "cre"),
                      email = "gastonquero@gmail.com"),
               person(given = "Sebastian",
                      family = "Simondi",
                      role = "aut",
                      email = "sebastian.simondi@gmail.com"),
               person(given = c("with", "contributions", "from", "Victoria"),
                      family = "Bonnecarrere",
                      role = "aut"),
               person(given = "Lucia",
                      family = "Gutierrez",
                      role = "aut"))
as necessary.
Found the following files/directories:
  ‘clusterhap_reports’
Maintainer: ‘Jakob Raymaekers <j.raymaekers@maastrichtuniversity.nl>’

The Description field contains
  <arXiv:2010.00950>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
checkRd: (-1) HTKmeans.Rd:62: Lost braces
    62 | \item{centers }{A matrix of cluster centres.}
       |      ^
checkRd: (-1) HTKmeans.Rd:62: Lost braces
    62 | \item{centers }{A matrix of cluster centres.}
       |                ^
checkRd: (-1) HTKmeans.Rd:63: Lost braces
    63 | \item{cluster }{A vector of integers (from 1:\code{k}) indicating the cluster to which each point is allocated.}
       |      ^
checkRd: (-1) HTKmeans.Rd:63: Lost braces
    63 | \item{cluster }{A vector of integers (from 1:\code{k}) indicating the cluster to which each point is allocated.}
       |                ^
checkRd: (-1) HTKmeans.Rd:64: Lost braces
    64 | \item{itnb }{The number of iterations executed until convergence}
       |      ^
checkRd: (-1) HTKmeans.Rd:64: Lost braces
    64 | \item{itnb }{The number of iterations executed until convergence}
       |             ^
checkRd: (-1) HTKmeans.Rd:65: Lost braces
    65 | \item{converged }{Whether the algorithm stopped by converging or through reaching the maximum number of itertions.}
       |      ^
checkRd: (-1) HTKmeans.Rd:65: Lost braces
    65 | \item{converged }{Whether the algorithm stopped by converging or through reaching the maximum number of itertions.}
       |                  ^
Maintainer: ‘Luis Alfonso Perez Martos <lapm0001@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Luis", "Alfonso", "Perez"),
                    family = "Martos",
                    role = c("aut", "cre"),
                    email = "lapm0001@gmail.com",
                    comment = c(ORCID = "0000-0002-5154-6105"))
as necessary.
Maintainer: ‘Evelina Gabasova <egabasova@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Evelina",
                    family = "Gabasova",
                    role = c("aut", "cre"),
                    email = "egabasova@gmail.com")
as necessary.
Maintainer: ‘Sandipan Dutta <sandipan.dutta07@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sandipan",
                      family = "Dutta",
                      role = c("aut", "cre"),
                      email = "sandipan.dutta07@gmail.com"),
               person(given = "Somnath",
                      family = "Datta",
                      role = "aut"))
as necessary.
Maintainer: ‘Rob Tibshirani <tibs@stanford.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amy",
                      family = "Kapp",
                      role = "aut",
                      email = "Amy_Kapp@hotmail.com"),
               person(given = "Rob",
                      family = "Tibshirani",
                      role = c("aut", "cre"),
                      email = "tibs@stanford.edu"))
as necessary.
Author field differs from that derived from Authors@R
  Author:    ‘Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>), Conrad Sanderson [cph] (Author of the C++ Armadillo library), Ryan Curtin [cph] (Author of the C++ Armadillo library), Siddharth Agrawal [cph] (Author of the C code of the Mini-Batch-Kmeans algorithm (https://github.com/siddharth-agrawal/Mini-Batch-K-Means)), Brendan Frey [cph] (Author of the matlab code of the Affinity propagation algorithm (for commercial use please contact the author of the matlab code)), Delbert Dueck [cph] (Author of the matlab code of the Affinity propagation algorithm), Vitalie Spinu [ctb] (Github Contributor)’
  Authors@R: ‘Lampros Mouselimis [aut, cre] (ORCID: <https://orcid.org/0000-0002-8024-1546>), Conrad Sanderson [cph] (Author of the C++ Armadillo library), Ryan Curtin [cph] (Author of the C++ Armadillo library), Siddharth Agrawal [cph] (Author of the C code of the Mini-Batch-Kmeans algorithm (https://github.com/siddharth-agrawal/Mini-Batch-K-Means)), Brendan Frey [cph] (Author of the matlab code of the Affinity propagation algorithm (for commercial use please contact the author of the matlab code)), Delbert Dueck [cph] (Author of the matlab code of the Affinity propagation algorithm), Vitalie Spinu [ctb] (Github: Github Contributor)’
Maintainer: ‘Justin Esarey <justin@justinesarey.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Etienne Lord <m.etienne.lord@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Etienne",
                      family = "Lord",
                      role = c("aut", "cre"),
                      email = "m.etienne.lord@gmail.com"),
               person(given = "Matthieu",
                      family = "Willems",
                      role = "aut"),
               person(given = "Francois-Joseph",
                      family = "Lapointe",
                      role = "aut"),
               person(given = "Vladimir",
                      family = "Makarenkov",
                      role = "aut"))
as necessary.
Maintainer: ‘Oliver Pfaffel <opfaffel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Oliver",
                    family = "Pfaffel",
                    role = c("aut", "cre"),
                    email = "opfaffel@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
divisive_clustering 5.165  0.024   6.448
checkRd: (-1) dtmvnom.Rd:30: Escaped LaTeX specials: \&
Maintainer: ‘Gero Szepannek <gero.szepannek@web.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Gero",
                      family = "Szepannek",
                      role = c("aut", "cre"),
                      email = "gero.szepannek@web.de"),
               person(given = "Rabea",
                      family = "Aschenbruck",
                      role = "aut"))
as necessary.
Maintainer: ‘Muhammad Atif <muhammad96_atif@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Muhammad",
                    family = "Atif",
                    role = c("aut", "cre"),
                    email = "muhammad96_atif@yahoo.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Angelos Markos <amarkos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Angelos",
                      family = "Markos",
                      role = c("aut", "cre"),
                      email = "amarkos@gmail.com"),
               person(given = c("Alfonso", "Iodice"),
                      family = "D'Enza",
                      role = "aut"),
               person(given = "Michel",
                      family = "van de Velden",
                      role = "aut"))
as necessary.
Maintainer: ‘Dan S. Reznik <dreznik@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Dan", "S."),
                    family = "Reznik",
                    role = c("aut", "cre"),
                    email = "dreznik@gmail.com")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Evelyne Vigneau <evelyne.vigneau@oniris-nantes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Evelyne",
                      family = "Vigneau",
                      role = c("aut", "cre"),
                      email = "evelyne.vigneau@oniris-nantes.fr"),
               person(given = "Mingkun",
                      family = "Chen",
                      role = "ctb"),
               person(given = "Veronique",
                      family = "Cariou",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  clusvisMixmod.Rd: MixmodCluster-class
  clusvisVarSelLCM.Rd: VSLCMresults-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Vasyl Pihur <vpihur@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Guy",
                      family = "Brock",
                      role = "aut",
                      email = "guy.brock@louisville.edu"),
               person(given = "Vasyl",
                      family = "Pihur",
                      role = c("aut", "cre"),
                      email = "vpihur@gmail.com"),
               person(given = "Susmita",
                      family = "Datta",
                      role = "aut",
                      email = "susmita.datta@louisville.edu"),
               person(given = "Somnath",
                      family = "Datta",
                      role = "aut",
                      email = "somnath.datta@louisville.edu"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
BHI 3.901  0.308   5.339
Maintainer: ‘Lukasz Nieweglowski <wookashn@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lukasz",
                    family = "Nieweglowski",
                    role = c("aut", "cre"),
                    email = "wookashn@gmail.com")
as necessary.

Found the following (possibly) invalid file URIs:
  URI: ml-pub.inf.ethz.ch/publications/papers/2004/lange.neco_stab.03.pdf
    From: man/cluster_stability.Rd
  URI: ml-pub.inf.ethz.ch/publications/papers/2004/lange.neco_stab.03.pdf
    From: man/cluster_stability_usr.Rd
  URI: ml-pub.inf.ethz.ch/publications/papers/2004/lange.neco_stab.03.pdf
    From: man/dot_product.Rd
  URI: ml-pub.inf.ethz.ch/publications/papers/2004/lange.neco_stab.03.pdf
    From: man/similarity_index.Rd
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cluster_stability.Rd: agnes
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Olaf Mersmann <olafm@statistik.tu-dortmund.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Heike",
                      family = "Trautmann",
                      role = "aut",
                      email = "trautmann@statistik.tu-dortmund.de"),
               person(given = "Olaf",
                      family = "Mersmann",
                      role = c("aut", "cre"),
                      email = "olafm@statistik.tu-dortmund.de"),
               person(given = "David",
                      family = "Arnu",
                      role = "aut",
                      email = "david.arnu@statistik.tu-dortmund.de"))
as necessary.
checkRd: (-1) CMAPSS.Rd:10: Lost braces
    10 | \item \code{train}{ a list of class "hhsmm.data" as the train dataset}
       |                   ^
checkRd: (-1) CMAPSS.Rd:11: Lost braces
    11 | \item \code{test}{ a list of class "hhsmm.data" as the test dataset}
       |                  ^
checkRd: (-1) CMAPSS.Rd:12: Lost braces
    12 | \item \code{subsets}{ a matrix containig the number of units in each subset of the CMAPSS data set (FD001-FD004) for the train and test datasets}
       |                     ^
Maintainer: ‘Raphaël Bonnet <raphael.bonnet@univ-cotedazur.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Raphaël",
                      family = "Bonnet",
                      role = c("aut", "cre"),
                      email = "raphael.bonnet@univ-cotedazur.fr"),
               person(given = "Jean-François",
                      family = "Peyron",
                      role = c("aut", "ths")))
as necessary.
checkRd: (-1) cmb.search.Rd:50: Lost braces; missing escapes or markup?
    50 |   \item{order}{applied conditioning order {length p}}
       |                                           ^
'library' or 'require' calls not declared from:
  ‘HDclassif’ ‘MixSim’ ‘mclust’
Maintainer: ‘Matthew T. Pratola <mpratola@stat.osu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Matthew", "T."),
                    family = "Pratola",
                    role = c("aut", "cre", "cph"),
                    email = "mpratola@stat.osu.edu")
as necessary.
checkRd: (-1) gp.realize.Rd:20: Lost braces; missing escapes or markup?
    20 | The list \code{l.v} is created by \code{makedistlist()} from a {n x p} design matrix on which to generate the unconditional GP realization.  The correlation parameters take on values in \code{(0,1)} and use the Gaussian correlation model, calculated as \code{rho^d(xi,xj)^2}.  This helper function is used to create the demonstration data used in the example for \code{calibrate()}.
       |                                                                ^
Maintainer: ‘Spencer Nystrom <nystromdev@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/snystrom/cmdfun
which should likely be
  https://github.com/snystrom/cmdfun/issues
instead.
Maintainer: ‘Simon Mak <sm769@duke.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Simon",
                    family = "Mak",
                    role = c("aut", "cre"),
                    email = "sm769@duke.edu")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Felix Held <felix.held@gmail.com>’

The Description field contains
  al. (2014) <arXiv:1312.5921>.  The package can also be used to learn
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

The Description field contains
  extensions of the original model (Cortes, (2018) <arXiv:1809.00366>)
  'implicit features' (Rendle, Zhang, Koren, (2019) <arXiv:1905.01395>),
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Anh Tuan Bui <atbui@u.northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Anh", "Tuan"),
                    family = "Bui",
                    role = c("aut", "cre"),
                    email = "atbui@u.northwestern.edu")
as necessary.

The Description field contains
  (2021) <arXiv:2111.13646> or closed-form solution in Bui (2022)
  (2021) <arXiv:2111.13646>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Nathaniel E. Helwig <helwig@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Nathaniel", "E."),
                    family = "Helwig",
                    role = c("aut", "cre"),
                    email = "helwig@umn.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mlsei.Rd: solve.QP
  mlsun.Rd: solve.QP
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) bvp.Rd:24: Lost braces
    24 | differential equations.  The code{midptivp} method solves initial
       |                                  ^
checkRd: (-1) ivp.Rd:38: Lost braces
    38 | differential equations.  The code{midptivp} method solves initial
       |                                  ^
checkRd: (-1) ivpsys.Rd:29: Lost braces
    29 | differential equations.  The code{midptivp} method solves initial
       |                                  ^
Maintainer: ‘LiLin-Yin <ylilin@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(family = "LiLin-Yin",
                    role = c("aut", "cre"),
                    email = "ylilin@163.com")
as necessary.

The BugReports field in DESCRIPTION has
  https://github.com/YinLiLin/CMplot/issues/new
which should likely be
  https://github.com/YinLiLin/CMplot/issues/new/issues
instead.
Maintainer: ‘Yiran Zhang <yiz038@health.ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yiran",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "yiz038@health.ucsd.edu"),
               person(given = "Ronghui",
                      family = "Xu",
                      role = "aut"))
as necessary.
Maintainer: ‘Stephan Dlugosz <stephan.dlugosz@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stephan",
                      family = "Dlugosz",
                      role = c("aut", "cre"),
                      email = "stephan.dlugosz@googlemail.com"),
               person(given = "Limin",
                      family = "Peng",
                      role = "aut"),
               person(given = "Ruosha",
                      family = "Li",
                      role = "aut"),
               person(given = "Shuolin",
                      family = "Shi",
                      role = "ctb"))
as necessary.
checkRd: (-1) plot.predict.crrQR.Rd:18: Escaped LaTeX specials: \#
checkRd: (-1) plot.predict.crrQR.Rd:22: Escaped LaTeX specials: \#
Maintainer: ‘Bob Gray <gray@jimmy.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bob",
                    family = "Gray",
                    role = c("aut", "cre"),
                    email = "gray@jimmy.harvard.edu")
as necessary.
Maintainer: ‘Wangqian Ju <wju@iastate.edu>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andrey Paramonov <paramon@acdlabs.ru>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrey",
                    family = "Paramonov",
                    role = c("aut", "cre"),
                    email = "paramon@acdlabs.ru")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
wfldmean 5.426   0.19   5.955
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘basis.R’
Maintainer: ‘Mohsin Vindhani <mohsin@utiligize.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cnaOpt.Rd: configTable, rreduce, condTbl, cna
  conCovOpt.Rd: configTable, cna
  conCovOpt_utils.Rd: rreduce, condTbl
  ereduce.Rd: full.ct
  findOutcomes.Rd: configTable, cna, selectCases, full.ct
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
findOutcomes 3.972  0.095   5.642
Maintainer: ‘Xiaotian Zhu <xiaotian.zhu.psualum@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiaotian",
                    family = "Zhu",
                    role = c("aut", "cre"),
                    email = "xiaotian.zhu.psualum@gmail.com")
as necessary.
Maintainer: ‘Ana Belen Nieto Librero <ananieto@usal.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "Belen", "Nieto"),
                      family = "Librero",
                      role = c("aut", "cre"),
                      email = "ananieto@usal.es"),
               person(given = "Priscila",
                      family = "Willems",
                      role = "aut",
                      email = "pwillems@bariloche.inta.gov.ar"),
               person(given = c("Purificacion", "Galindo"),
                      family = "Villardon",
                      role = "aut",
                      email = "pgalindo@usal.es"))
as necessary.
checkRd: (-1) cnlt.reg.Rd:43: Lost braces
    43 | \emph{Technometrics}, bold{60} (1), 48-60, DOI 10.1080/00401706.2017.1281846.\cr\cr
       |                           ^
checkRd: (-1) fwtnppermC.Rd:35: Lost braces
    35 | Given \eqn{n} points on a line, \env{x}, each with a corresponding env{f} value this function computes
       |                                                                       ^
Maintainer: ‘Guoli Sun <guolisun87@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Krasnitz",
                      role = "aut"),
               person(given = "Guoli",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "guolisun87@gmail.com"))
as necessary.
Maintainer: ‘JiaSheng Zhang <zhangjiasheng0509@outlook.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "JiaSheng",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "zhangjiasheng0509@outlook.com",
                      comment = "<zhangjiasheng0509@outlook.com>"),
               person(given = "SiWei",
                      family = "Deng",
                      role = "aut"),
               person(given = "Feng",
                      family = "Yu",
                      role = "aut"),
               person(given = "YangYang",
                      family = "Zhang",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
ksample_test 4.023      0   5.531
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
cvfit_WTSMTH 4.501   0.03   5.605
Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
               person(given = "Yonghong",
                      family = "Wang",
                      role = "aut"),
               person(given = "Jack",
                      family = "Zhu",
                      role = "aut"),
               person(given = "Paul",
                      family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                                    user system elapsed
writeMeltedChromosomalMatrixToDisk 4.072  0.476   5.551
Maintainer: ‘Emmanuel Paradis <Emmanuel.Paradis@ird.fr>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
coat-methods 5.191  0.121    6.55
Maintainer: ‘Alessandra Cabassi <alessandra.cabassi@mrc-bsu.cam.ac.uk>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Birk Diedenhofen <mail@birkdiedenhofen.de>’

The Description field contains
  http://comparingcronbachalphas.org. A plugin for the R GUI and IDE
  RKWard is included. Please install RKWard from https:// rkward.kde.org
Please enclose URLs in angle brackets (<...>).
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
coda_coxnet 7.175  0.225   9.379
Maintainer: ‘Elliott Gordon-Rodriguez <eg2912@columbia.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) educFM.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) educFM.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) educFM.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) educFM.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) educFM.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) educFM.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) educFM.Rd:28: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
                                  user system elapsed
TauAndParameters_EstParmFunc_FBM 7.632  0.072   8.782
StudyingParam                    0.078  0.062   5.257
FromVectorToMatrix_BPBM          0.045  0.036   5.661
Maintainer: ‘Martyn Plummer <martyn.plummer@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Lars Ronnegard <lrn@du.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lars",
                    family = "Ronnegard",
                    role = c("aut", "cre"),
                    email = "lrn@du.se")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cb_summary_stats_numeric.R’
Maintainer: ‘Gabriel Becker <gabembecker@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Duncan", "Temple"),
                      family = "Lang",
                      role = "aut"),
               person(given = "Roger",
                      family = "Peng",
                      role = "aut"),
               person(given = "Deborah",
                      family = "Nolan",
                      role = "aut"),
               person(given = "Gabriel",
                      family = "Becker",
                      role = c("aut", "cre"),
                      email = "gabembecker@gmail.com"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  create_codemeta.Rd: write_json
  write_codemeta.Rd: write_json
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Daniel Kaschek <daniel.kaschek@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Daniel",
                    family = "Kaschek",
                    role = c("aut", "cre"),
                    email = "daniel.kaschek@gmail.com")
as necessary.
Maintainer: ‘Luke Tierney <luke-tierney@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Luke",
                    family = "Tierney",
                    role = c("aut", "cre"),
                    email = "luke-tierney@uiowa.edu")
as necessary.
Maintainer: ‘Deisy Morselli Gysi <deisy.ccnr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Deisy", "Morselli"),
                      family = "Gysi",
                      role = c("aut", "cre"),
                      email = "deisy.ccnr@gmail.com"),
               person(given = c("Tiago", "de", "Miranda"),
                      family = "Fragoso",
                      role = "aut"),
               person(given = "Eivind",
                      family = "Almaas",
                      role = "aut"),
               person(given = "Katja",
                      family = "Nowick.",
                      role = "aut"))
as necessary.

The Description field contains
  <arXiv:1802.00828>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
Maintainer: ‘Zhiyong Zhang <johnnyzhz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhiyong",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "johnnyzhz@gmail.com"),
               person(given = "Ke-Hai",
                      family = "Yuan",
                      role = "aut"))
as necessary.
Maintainer: ‘Jared P. Lander <packages@jaredlander.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jared", "P."),
                    family = "Lander",
                    role = c("aut", "cre"),
                    email = "packages@jaredlander.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  coefplot.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
coefplot 6.029  0.214   7.962
Maintainer: ‘Gavin L. Simpson <ucfagls@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘David W. Roberts <droberts@montana.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("David", "W."),
                    family = "Roberts",
                    role = c("aut", "cre"),
                    email = "droberts@montana.edu")
as necessary.
Maintainer: ‘Alessio Albanese <alessio.albanese@wur.nl>’

The Description field contains
  W., and Behrouzi, P. (2024) <arXiv:2403.18602>. Build multiple networks
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
availablePlotColumns  7.882  0.244  11.306
availableTableColumns 6.127  0.096   8.137
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘CreateCohortExplorerApp.R’
Maintainer: ‘Elias Laurin Meyer <elias.meyer@meduniwien.ac.at>’

The Description field contains
  in Meyer et al. <arXiv:2202.02182>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
plot_trial 4.657  0.153   5.433
Maintainer: ‘Jari Haukka <jari.haukka@helsinki.fi>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jari",
                    family = "Haukka",
                    role = c("aut", "cre"),
                    email = "jari.haukka@helsinki.fi")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  boxesLx.Rd: grViz
  mkratetable.Rd: survival, pyears
  plotcuminc.Rd: survival, pyears
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Wilmer Martinez <womartin@asu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Wilmer",
                    family = "Martinez",
                    role = c("aut", "cre"),
                    email = "womartin@asu.edu")
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘coincident_profile.Rd’:
    http://dx.doi.org/10.1016/j.spl.2015.11.008
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘utils.R’
Maintainer: ‘Philipp Aschersleben <aschersleben@statistik.tu-dortmund.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘monitorCointegration.Rd’:
    http://dx.doi.org/10.2139/ssrn.2624657
  File ‘monitorStationarity.Rd’:
    http://dx.doi.org/10.2139/ssrn.2624657
Maintainer: ‘Philipp Aschersleben <aschersleben@statistik.tu-dortmund.de>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cointReg.Rd’:
    http://dx.doi.org/10.2307/2297545
    http://dx.doi.org/10.2307/2298004
    http://dx.doi.org/10.1017/S0266466600004217
    http://dx.doi.org/10.2307/2951763
    http://dx.doi.org/10.1016/j.jeconom.2013.10.015
  File ‘cointRegD.Rd’:
    http://dx.doi.org/10.2307/2298004
    http://dx.doi.org/10.1017/S0266466600004217
    http://dx.doi.org/10.2307/2951763
  File ‘cointRegFM.Rd’:
    http://dx.doi.org/10.2307/2297545
  File ‘cointRegIM.Rd’:
    http://dx.doi.org/10.1016/j.jeconom.2013.10.015
  File ‘getBandwidth.Rd’:
    http://dx.doi.org/10.2307/2938229
    http://dx.doi.org/10.2307/2297912
Maintainer: ‘M. Helena Goncalves <mhgoncal@ualg.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("M.", "Helena"),
                      family = "Goncalves",
                      role = c("aut", "cre"),
                      email = "mhgoncal@ualg.pt"),
               person(given = c("M.", "Salome"),
                      family = "Cabral",
                      role = "aut"),
               person(given = c("apart", "from", "a", "set", "of", "Fortran-77", "subroutines", "written", "by", "R."),
                      family = "Piessens",
                      role = "aut"),
               person(given = "E.",
                      family = "de Doncker",
                      role = "aut"),
               person(given = c("belonging", "to", "the", "suite"),
                      family = "\"Quadpack\".",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Maintainer: ‘Krishanu Mukherjee <toton1181@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Krishanu",
                    family = "Mukherjee",
                    role = c("aut", "cre"),
                    email = "toton1181@gmail.com")
as necessary.
Maintainer: ‘Nathan Levett <nathan.a.z.levett@gmail.com>’

The BugReports field in DESCRIPTION has
  https://github.com/Skenvy/Collatz/issues/new/choose
which should likely be
  https://github.com/Skenvy/Collatz/issues/new/choose/issues
instead.
File ‘collections/libs/collections.so’:
  Found non-API calls to R: ‘PRENV’, ‘SET_CLOENV’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Steve Condylios <steve.condylios@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Steve",
                    family = "Condylios",
                    role = c("aut", "cre"),
                    email = "steve.condylios@gmail.com",
                    comment = c(ORCID = "0000-0003-0599-844X"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘collinear.R’ ‘cor_cramer_v.R’ ‘cor_df.R’ ‘cor_select.R’ ‘f_auc.Rd’
    ‘f_r2.Rd’ ‘f_r2_counts.Rd’ ‘f_v.Rd’ ‘f_v_rf_categorical.Rd’
    ‘identify.R’ ‘model_formula.R’ ‘preference_order.R’
    ‘preference_order_methods.R’ ‘target_encoding_methods.R’ ‘validate.R’
    ‘vif_df.R’ ‘vif_select.R’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
collinear 1.758  0.178   5.361
Maintainer: ‘Kaiyin Zhong <kindlychung@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kaiyin",
                      family = "Zhong",
                      role = c("aut", "cre"),
                      email = "kindlychung@gmail.com"),
               person(given = "Fan",
                      family = "Liu",
                      role = "aut"))
as necessary.

File 'R/collUtils-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘collUtils-package.Rd’:
    \keyword{ 
      GWAS
      Compound heterozygosity
      Genomics
      } [TRUNCATED]
Maintainer: ‘Thiyanga Talagala <thiyanga.talagala@monash.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Thiyanga",
                    family = "Talagala",
                    role = c("aut", "cre"),
                    email = "thiyanga.talagala@monash.edu")
as necessary.
Maintainer: ‘Hui Zhang <hzhang@northwestern.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jiahui",
                      family = "Xu",
                      role = "aut"),
               person(given = "Xueyan",
                      family = "Liu",
                      role = "aut"),
               person(given = "Lin",
                      family = "Li",
                      role = "aut"),
               person(given = "Cheng",
                      family = "Cheng",
                      role = "aut"),
               person(given = "Hui",
                      family = "Zhang",
                      role = c("aut", "cre"),
                      email = "hzhang@northwestern.edu"))
as necessary.
Maintainer: ‘Mahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  roi_select.Rd: imager
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) getHistList.Rd:32: Lost braces; missing escapes or markup?
    32 | ({FALSE})? If a bin is empty, the center of the bin is returned as the
       |  ^
checkRd: (-1) imageClusterPipeline.Rd:82: Lost braces; missing escapes or markup?
    82 | of the bin ({FALSE})? If a bin is empty, the center of the bin is returned
       |             ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘simulate_populations.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot_colors_3d.Rd: plotly
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damiano",
                    family = "Fantini",
                    role = c("aut", "cre"),
                    email = "damiano.fantini@gmail.com")
as necessary.

File 'R/colorhcplot-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  InterpolateColorFun.Rd: ggplot2
  OrderDataTSP.Rd: TSP
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Andrew Heiss <andrew@andrewheiss.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alan Inglis <alan.n.inglis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Inglis",
                    role = c("aut", "cre"),
                    email = "alan.n.inglis@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
img2pal 1.987  0.191   9.124
checkRd: (-1) colour_values.Rd:143: Lost braces in \itemize; meant \describe ?
checkRd: (-1) colour_values.Rd:144: Lost braces in \itemize; meant \describe ?
checkRd: (-1) colour_values_rgb.Rd:143: Lost braces in \itemize; meant \describe ?
checkRd: (-1) colour_values_rgb.Rd:144: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Yang Ni <yni@stat.tamu.edu>’

The Description field contains
  categorical data. See Ni, Y. (2022) <arXiv:2209.08579> "Bivariate
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘c4a.Rd’ ‘c4a_plot_hcl_space.R’ ‘c4a_table.R’
Unexported object imported by a ':::' call: ‘crayon:::mypaste’
  See the note in ?`:::` about the use of this operator.
Maintainer: ‘Andreas Muehling <andreas.muehling@tum.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Muehling",
                    role = c("aut", "cre"),
                    email = "andreas.muehling@tum.de")
as necessary.
Maintainer: ‘Minghui Wang <m.h.wang@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Minghui",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "m.h.wang@live.com"),
               person(given = "Yiyuan",
                      family = "Liu",
                      role = "aut"),
               person(given = "Shizhong",
                      family = "Han",
                      role = "aut"))
as necessary.
Maintainer: ‘Breya McGlown <bswlker2@memphis.edu>’

The Description field contains
  Heard & Rubin-Delanchy (2017) <arXiv:1707.06897>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Problems with news in ‘NEWS.md’:
No news entries found.
Maintainer: ‘Vince Carey <stvjc@channing.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Scott",
                      family = "Chasalow",
                      role = "aut"),
               person(given = "Vince",
                      family = "Carey",
                      role = "cre",
                      email = "stvjc@channing.harvard.edu"))
as necessary.
Malformed Description field: should contain one or more complete sentences.
checkRd: (-1) xsimplex.Rd:6: Lost braces; missing escapes or markup?
     6 |              Generates all points on a {p,n} simplex lattice (i.e. a p-part
       |                                        ^
Maintainer: ‘Florian Ziel <florian.ziel@uni-due.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Florian",
                    family = "Ziel",
                    role = c("aut", "cre"),
                    email = "florian.ziel@uni-due.de")
as necessary.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
CI_test 6.439    0.1   4.338
Maintainer: ‘Mohamed Laib <laib.med@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mohamed",
                      family = "Laib",
                      role = c("aut", "cre"),
                      email = "laib.med@gmail.com"),
               person(given = "Imane",
                      family = "Rezgui",
                      role = "aut"),
               person(given = "Zebida",
                      family = "Gheribi-Aoulmi",
                      role = "aut"),
               person(given = "Herve",
                      family = "Monod",
                      role = "aut"))
as necessary.

The URL field contains the following bad parts:
  'www.sites.google.com/site/mohamedlaibwebpage'
The URL field should be a list of URLs separated by commas or
whitespace.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘GPBIB4A.Rd’:
    http://dx.doi.org/10.4236/am.2015.62024
  File ‘GPBIB4B.Rd’:
    http://dx.doi.org/10.4236/am.2015.62024
  File ‘GPBIB5.Rd’:
    http://dx.doi.org/10.4236/am.2015.62024
  File ‘GPBIB7A.Rd’:
    http://dx.doi.org/10.4236/am.2015.62024
  File ‘GPBIB7B.Rd’:
    http://dx.doi.org/10.4236/am.2015.62024
Maintainer: ‘Benjamin Blonder <benjamin.blonder@berkeley.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Benjamin",
                    family = "Blonder",
                    role = c("aut", "cre"),
                    email = "benjamin.blonder@berkeley.edu")
as necessary.
Found the following files/directories:
  ‘cometExactTest_plot.pdf’
Maintainer: ‘Antonio Canale <antonio.canale@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Canale",
                      role = c("aut", "cre"),
                      email = "antonio.canale@unipd.it"),
               person(given = "Daniele",
                      family = "Durante",
                      role = "ctb"),
               person(given = "Arianna",
                      family = "Falcioni",
                      role = "aut"),
               person(given = "Luisa",
                      family = "Galtarossa",
                      role = "aut"),
               person(given = "Tommaso",
                      family = "Rigon",
                      role = "ctb"))
as necessary.
checkRd: (-1) BMD.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMD.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMD.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMD.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) BMD.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add.risk.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) add.risk.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:67-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) comire.gibbs.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘S. Gorsky <sgorsky@umass.edu>’

The Description field contains
  information, see Gorsky, Chan and Ma (2020) <arXiv:2001.06451>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
betaRegDisp 6.909  0.159   7.944
checkRd: (-1) count_pairs.Rd:19-20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) count_pairs.Rd:27-28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) entropy.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) entropy.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) entropy.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) entropy.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) score_log_nonparam.Rd:36: Lost braces; missing escapes or markup?
    36 | {0, 1}.
       | ^
checkRd: (-1) score_log_semiparam.Rd:40: Lost braces; missing escapes or markup?
    40 | values in {0, 1}.
       |           ^
checkRd: (-1) sort_pairs.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) sort_pairs.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kornelius Rohmeyer <rohmeyer@small-projects.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kornelius",
                      family = "Rohmeyer",
                      role = c("aut", "cre"),
                      email = "rohmeyer@small-projects.de",
                      comment = c(ROR = "R package")),
               person(given = c("see", "COPYRIGHTS", "file", "for", "the", "authors", "of", "the", "java"),
                      family = "libraries",
                      role = "aut"))
as necessary.
Maintainer: ‘Jia-Han Shih <tommy355097@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jia-Han",
                    family = "Shih",
                    role = c("aut", "cre"),
                    email = "tommy355097@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) hmm.Rd:47-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:56-62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:63-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:71-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:75-78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:79-84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:85-89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:95-103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:104-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:108-111: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:112-118: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:119-129: Lost braces in \itemize; meant \describe ?
checkRd: (-1) hmm.Rd:130-133: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Ana C. Braga <acb@dps.uminho.pt>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Ana", "C.", "Braga", "with", "contributions", "from", "Hugo"),
                      family = "Frade",
                      role = "aut"),
               person(given = "Sara",
                      family = "Carvalho",
                      role = "aut"),
               person(given = c("Andre", "M."),
                      family = "Santiago",
                      role = "aut"),
               person(given = c("Ana", "C."),
                      family = "Braga",
                      role = "cre",
                      email = "acb@dps.uminho.pt"))
as necessary.
Maintainer: ‘Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christina",
                      family = "Heinze-Deml",
                      role = c("aut", "cre"),
                      email = "heinzedeml@stat.math.ethz.ch"),
               person(given = "Nicolai",
                      family = "Meinshausen",
                      role = "aut",
                      email = "meinshausen@stat.math.ethz.ch"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Le Kang <Le.Kang@vcuhealth.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Le Kang",
                      role = c("aut", "cre"),
                      email = "le.kang@vcuhealth.org"),
               person(given = "Weijie",
                      family = "Chen",
                      role = "aut"))
as necessary.

Problems when reading CITATION file:
  It is recommended to use ‘given’ instead of ‘middle’.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘compareMCMCs.R’ ‘metrics-addMetrics.R’
Maintainer: ‘Paul Murrell <p.murrell@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paul",
                    family = "Murrell",
                    role = c("aut", "cre"),
                    email = "p.murrell@auckland.ac.nz")
as necessary.
checkRd: (-1) glass.Rd:10: Lost braces
    10 | \item{item}{factor}{200 levels - which item the measurements came from}
       |                    ^
checkRd: (-1) glass.Rd:11-12: Lost braces
    11 | \item{fragment}{factor}{4 levels - which of the four fragments from each item the observations were made
       |                        ^
checkRd: (-1) glass.Rd:13: Lost braces
    13 | \item{logNaO}{numeric}{log of sodium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:14: Lost braces
    14 | \item{logMgO}{numeric}{log of magnesium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:15: Lost braces
    15 | \item{logAlO}{numeric}{log of aluminium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:16: Lost braces
    16 | \item{logSiO}{numeric}{log of silicon concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:17: Lost braces
    17 | \item{logKO}{numeric}{log of potassium concentration to oxygen concentration}
       |                      ^
checkRd: (-1) glass.Rd:18: Lost braces
    18 | \item{logCaO}{numeric}{log of calcium concentration to oxygen concentration}
       |                       ^
checkRd: (-1) glass.Rd:19: Lost braces
    19 | \item{logFeO}{numeric}{log of iron concentration to oxygen concentration}
       |                       ^
Maintainer: ‘Samuel W.K. Wong <samuel.wong@uwaterloo.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Samuel", "W.K."),
                      family = "Wong",
                      role = c("aut", "cre"),
                      email = "samuel.wong@uwaterloo.ca"),
               person(given = "Dylan",
                      family = "Shi",
                      role = "aut"),
               person(given = "Megan",
                      family = "Hazlett",
                      role = "aut"),
               person(given = "Jasmine",
                      family = "Cheng",
                      role = "aut"))
as necessary.
checkRd: (-1) atomdeps.Rd:9: Lost braces
     9 |  \item{"tangle"}: {Dihedral angle defined by atoms A-B-C-D as described below. \code{NA}'s represent the free side chain dihedral angles \emph{chi} for that amino acid.}
       |                   ^
checkRd: (-1) atomdeps.Rd:10: Lost braces; missing escapes or markup?
    10 |  \item{"names"}: {The component atoms of the amino acid side chain.  Represents atom D in the dihedral.}
       |                  ^
checkRd: (-1) atomdeps.Rd:11: Lost braces; missing escapes or markup?
    11 |  \item{"matx"}: {The names of atoms A,B,C in the dihedral, with rows corresponding to the atoms in "names".}
       |                 ^
checkRd: (-1) atomdeps.Rd:12: Lost braces; missing escapes or markup?
    12 |  \item{"bangle"}: {Planar bond angle formed between B-C-D}
       |                   ^
checkRd: (-1) atomdeps.Rd:13: Lost braces; missing escapes or markup?
    13 |  \item{"blength"}: {Bond length between C-D}
       |                    ^
Maintainer: ‘Saralees Nadarajah <Saralees.Nadarajah@manchester.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Martin",
                      family = "Wiegand",
                      role = "aut"),
               person(given = "Saralees",
                      family = "Nadarajah",
                      role = c("aut", "cre"),
                      email = "saralees.nadarajah@manchester.ac.uk"))
as necessary.
checkRd: (-1) keener.Rd:82: Lost braces; missing escapes or markup?
    82 | a_{ij} = (S_ij + 1) / (S_ij + S_ji + 2). This step should make comparing
       |   ^
Maintainer: ‘M. A. J. Zondervan-Zwijnenburg <m.zondervan@vilans.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("M.", "A.", "J."),
                    family = "Zondervan-Zwijnenburg",
                    role = c("aut", "cre"),
                    email = "m.zondervan@vilans.nl")
as necessary.
Maintainer: ‘William Ryan <wryan1@binghamton.edu>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rlm.Rd: lqs
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Albert Dorador <albert.dorador@estudiant.upc.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Albert",
                      family = "Dorador",
                      role = c("aut", "cre"),
                      email = "albert.dorador@estudiant.upc.edu"),
               person(given = c("Uffe", "Høgsbro"),
                      family = "Thygesen",
                      role = "aut"))
as necessary.
Maintainer: ‘Michał Krassowski <krassowski.michal+r@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Tony Pourmohamad <tpourmohamad@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Andrew Raim <andrew.raim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Kimberly", "Sellers", "Thomas", "Lotze", "<thomas.lotze@thomaslotze.com>", "Andrew", "Raim"),
                      family = "<andrew.raim@gmail.com>",
                      role = "aut",
                      email = "andrew.raim@gmail.com"),
               person(given = "Andrew",
                      family = "Raim",
                      role = "cre",
                      email = "andrew.raim@gmail.com"))
as necessary.
Maintainer: ‘K. Gerald van den Boogaart <support@boogaart.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("K.", "Gerald"),
                      family = "van den Boogaart",
                      role = c("aut", "cre"),
                      email = "boogaart@hzdr.de"),
               person(given = "Raimon",
                      family = "Tolosana-Delgado",
                      role = "aut"),
               person(given = "Matevz",
                      family = "Bren",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  codadendrogram.Rd: histogram
  pairwisePlot.Rd: lmrob
  pwlrPlot.Rd: lmrob
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Zengchao Hao <z.hao4univ@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zengchao",
                    family = "Hao",
                    role = c("aut", "cre"),
                    email = "z.hao4univ@gmail.com")
as necessary.
Maintainer: ‘Bowen Liu <bowen.liu@umkc.edu>’

The Description field contains
  found in Bowen Liu, Malwane M.A. Ananda (2023) <arXiv:2309.16443>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘P. Lafaye de Micheaux <lafaye@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("P.", "Lafaye"),
                    family = "de Micheaux",
                    role = c("aut", "cre"),
                    email = "lafaye@unsw.edu.au")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Michel Semenou <michel.semenou@oniris-nantes.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michel",
                    family = "Semenou",
                    role = c("aut", "cre"),
                    email = "michel.semenou@oniris-nantes.fr")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
ResSimulLvrRatio 3.465  0.116   5.252
Maintainer: ‘AC Del Re <acdelre@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("AC", "Del"),
                    family = "Re",
                    role = c("aut", "cre"),
                    email = "acdelre@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zoltan Botta-Dukat <botta-dukat.zoltan@okologia.mta.hu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Zoltan",
                    family = "Botta-Dukat",
                    role = c("aut", "cre"),
                    email = "botta-dukat.zoltan@okologia.mta.hu")
as necessary.
Maintainer: ‘Zhicheng Du <dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Ziqiang",
                      family = "Lin",
                      role = "aut"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Mark Baas <mark.baas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mark",
                    family = "Baas",
                    role = c("aut", "cre"),
                    email = "mark.baas@gmail.com")
as necessary.
Maintainer: ‘W. E. Wansouwé <ericwansouwe@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("W.", "E."),
                      family = "Wansouwé",
                      role = c("aut", "cre"),
                      email = "ericwansouwe@gmail.com"),
               person(given = c("F.", "G."),
                      family = "Libengué",
                      role = "aut"),
               person(given = c("C.", "C."),
                      family = "Kokonendji",
                      role = "aut"))
as necessary.

The URL field contains the following bad parts:
  www.r-project.org
The URL field should be a list of URLs separated by commas or
whitespace.
Maintainer: ‘Tran Khanh Hiep <hieptkse03059@fpt.edu.vn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Tran", "Khanh"),
                      family = "Hiep",
                      role = c("aut", "cre"),
                      email = "hieptkse03059@fpt.edu.vn"),
               person(given = c("Nguyen", "Minh"),
                      family = "Duc",
                      role = "aut"))
as necessary.

File 'R/conclust-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Specified C++11: please drop specification unless essential
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘fitmodel.R’
Maintainer: ‘Adrienne Traxler <adrienne.traxler@wright.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) concstats_hhi.Rd:13: Lost braces; missing escapes or markup?
    13 | value is required. Ranges from {0, 1} and often used for comparison over
       |                                ^
Maintainer: ‘Shannon T. Holloway <shannon.t.holloway@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Amanda",
                      family = "Brucker",
                      role = "aut"),
               person(given = c("Shannon", "T."),
                      family = "Holloway",
                      role = c("aut", "cre"),
                      email = "shannon.t.holloway@gmail.com"),
               person(given = "Jung-Ying",
                      family = "Tzeng",
                      role = "aut"))
as necessary.
Maintainer: ‘David Clement <dyc24@cornell.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Clement",
                    role = c("aut", "cre"),
                    email = "dyc24@cornell.edu")
as necessary.
Maintainer: ‘Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Christina",
                      family = "Heinze-Deml",
                      role = c("aut", "cre"),
                      email = "heinzedeml@stat.math.ethz.ch"),
               person(given = "Jonas",
                      family = "Peters",
                      role = "aut",
                      email = "jonas.peters@math.ku.dk"),
               person(given = c("Asbjoern", "Marco", "Sinius"),
                      family = "Munk",
                      role = "aut",
                      email = "fgp998@alumni.ku.dk"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <arXiv:1202.3775>), Residual Prediction test (based on Shah and
  Buehlmann, <arXiv:1511.03334>), Invariant environment prediction,
  <arXiv:1706.08576>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
checkRd: (-1) KCI.Rd:44: Lost braces
    44 |  \item \code{testStatistic} the statistic Tr(K_{(ddot{(Y)}|X)} * K_{(E|X)})
       |                                                ^
checkRd: (-1) KCI.Rd:44: Lost braces
    44 |  \item \code{testStatistic} the statistic Tr(K_{(ddot{(Y)}|X)} * K_{(E|X)})
       |                                                      ^
checkRd: (-1) KCI.Rd:44: Lost braces; missing escapes or markup?
    44 |  \item \code{testStatistic} the statistic Tr(K_{(ddot{(Y)}|X)} * K_{(E|X)})
       |                                                                    ^
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CODE_OF_CONDUCT.md
    From: README.md
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  pcmvt.Rd: pmvt, GenzBretz
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Alessandra R. Brazzale <alessandra.brazzale@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Alessandra", "R.", "Brazzale.", "R", "port", "by", "Alessandra", "R.", "Brazzale"),
                      family = "<alessandra.brazzale@unipd.it>",
                      role = "aut",
                      email = "alessandra.brazzale@unipd.it"),
               person(given = c("following", "earlier", "work", "by", "Douglas"),
                      family = "Bates.",
                      role = "aut"),
               person(given = c("Alessandra", "R."),
                      family = "Brazzale",
                      role = "cre",
                      email = "alessandra.brazzale@unipd.it"))
as necessary.

Problems when reading CITATION file:
  It is recommended to use ‘given’ instead of ‘first’.
  It is recommended to use ‘given’ instead of ‘middle’.
  It is recommended to use ‘family’ instead of ‘last’.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) babies.Rd:35: Escaped LaTeX specials: \&
Maintainer: ‘Marta Sestelo <sestelo@uvigo.es>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Luis",
                      family = "Meira-Machado",
                      role = "aut"),
               person(given = "Marta",
                      family = "Sestelo",
                      role = c("aut", "cre"),
                      email = "sestelo@uvigo.es"))
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
'library' or 'require' call not declared from: ‘e1071’
Maintainer: ‘Bill Venables <Bill.Venables@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Bill",
                    family = "Venables",
                    role = c("aut", "cre"),
                    email = "bill.venables@gmail.com")
as necessary.
checkRd: (-1) mya.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mya.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mya.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mya.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mya.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
Running ‘confintrob_test.R’ [11s/14s]
  Comparing ‘confintrob_test.Rout’ to ‘confintrob_test.Rout.save’ ...64c64
<       AIC       BIC    logLik -2*log(L)  df.resid 
---
>      AIC      BIC   logLik deviance df.resid 
203c203
<       AIC       BIC    logLik -2*log(L)  df.resid 
---
>      AIC      BIC   logLik deviance df.resid 
  Running ‘parallelTest.R’ [4s/9s]
  Running ‘varComprob_createParamSampleFunction.R’ [9s/12s]
  Comparing ‘varComprob_createParamSampleFunction.Rout’ to ‘varComprob_createParamSampleFunction.Rout.save’ ... OK
Maintainer: ‘Mathias Fuchs<mathias@mathiasfuchs.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Mathias",
                    family = "Fuchs",
                    role = c("aut", "cre"),
                    email = "mathias@mathiasfuchs.de")
as necessary.

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘confIntVariance-package.Rd’:
    \keyword{variance, confidence interval}
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  loo_conformal.Rd: predictive_interval
  predictive_interval.conformal.Rd: posterior_predict
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
loo_conformal 7.206  0.387   9.106
Maintainer: ‘Niharika Gauraha <niharika.gauraha@farmbio.uu.se>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Niharika",
                      family = "Gauraha",
                      role = c("aut", "cre"),
                      email = "niharika.gauraha@farmbio.uu.se"),
               person(given = "Ola",
                      family = "Spjuth",
                      role = "aut"))
as necessary.
Maintainer: ‘Paolo Vergottini <paolo.vergottini@gmail.com>’

The Description field contains
  Fontana, and Vantini (2021) <arXiv:2102.06746>, Diquigiovanni, Fontana,
  and Vantini (2021) <arXiv:2106.01792>, Solari, and Djordjilovic (2021)
  <arXiv:2103.00627>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Paolo Vergottini <paolo.vergottini@gmail.com>’

The Description field contains
  <arXiv:1604.04173>, Diquigiovanni, Fontana, and Vantini (2021)
  <arXiv:2102.06746>, Diquigiovanni, Fontana, and Vantini (2021)
  <arXiv:2106.01792>, Solari, and Djordjilovic (2021) <arXiv:2103.00627>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  conformal.multidim.full.Rd: future.apply
  conformal.multidim.msplit.Rd: future.apply
  glmnet.funs.Rd: glmnet
  plot_multidim.Rd: ggplot2, gridExtra, hrbrthemes
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
conformal.multidim.jackplus 6.812  0.413  21.191
Maintainer: ‘Yachong Yang <yachong@wharton.upenn.edu>’

The Description field contains
  <arxiv:2104.13871>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  km.outcomes.Rd: survfit
  km.pmf.Rd: survfit
  km.support.Rd: survfit
  km.surv.Rd: survfit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Joerg-Henrik Heine <jhheine@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Joerg-Henrik",
                      family = "Heine",
                      role = c("aut", "cre"),
                      email = "jhheine@googlemail.com"),
               person(given = c("R.W.", "Alexandrowicz"),
                      family = ")",
                      role = "aut"),
               person(given = c("some", "package", "testing", "by", "Mark"),
                      family = "Stemmler",
                      role = "aut"))
as necessary.
Maintainer: ‘Jesse Hemerik <j.b.a.hemerik@lumc.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jesse",
                      family = "Hemerik",
                      role = c("aut", "cre"),
                      email = "j.b.a.hemerik@lumc.nl"),
               person(given = "Jelle",
                      family = "Goeman",
                      role = "aut"))
as necessary.
checkRd: (-1) binary_class_cm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binary_class_cm.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binary_class_cm.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) binary_class_cm.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) multi_class_cm.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘I.M.L. Nadeesha Jayaweera <njayaweera@wpi.edu>’

The Description field contains
  <[https:doi.org/10.2307/1390838]https:doi.org/10.2307/1390838>.
Please write DOIs as <doi:prefix/suffix>.
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
get_var_info 0.59  0.169   6.201
Maintainer: ‘James Conigrave <james.conigrave@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "James",
                    family = "Conigrave",
                    role = c("aut", "cre"),
                    email = "james.conigrave@gmail.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
autoModel 4.468  0.332   5.248
Maintainer: ‘José Manuel Monroy Kuhn <nolozz@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) NetStats.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) NetStats.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) generate_network.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Tomasz Bartlomowicz <tomasz.bartlomowicz@ue.wroc.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Andrzej",
                      family = "Bak",
                      role = "aut"),
               person(given = "Tomasz",
                      family = "Bartlomowicz",
                      role = c("aut", "cre"),
                      email = "andrzej.bak@ue.wroc.pl"),
               person(role = "aut",
                      email = "tomasz.bartlomowicz@ue.wroc.pl"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The URL field contains the following bad parts:
  www.r-project.org
The URL field should be a list of URLs separated by commas or
whitespace.
Found the following files/directories:
  ‘design_names.csv’ ‘design_numbers.csv’
  ‘encoded_orthogonal_factorial_design.csv’
  ‘orthogonal_factorial_design.csv’
Maintainer: ‘Sidharth Macherla <msidharthrasik@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DBI.Rd: DBIConnection-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
qgraph.conNEcT 4.992  0.005   5.455
Maintainer: ‘David M. Kaplan <dmkaplan2000@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "M."),
                      family = "Kaplan",
                      role = c("cre", "aut"),
                      email = "dmkaplan2000@gmail.com"),
               person(given = "Marco",
                      family = "Andrello",
                      role = "ctb",
                      email = "marco.andrello@gmail.com"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘chile.loco.Rd’:
    http://dx.doi.org/10.1016/j.pocean.2014.03.011
  File ‘damselfish.lods.Rd’:
    http://dx.doi.org/10.1046/j.1471-8286.2003.00439.x
Maintainer: ‘Jonas Moss <jonas.gjertsen@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘conogive.Rd’:
    https://doi.org/10.1007/978-1-4757-2691-6_15
Maintainer: ‘Alexis Dinno <alexis.dinno@pdx.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alexis",
                    family = "Dinno",
                    role = c("aut", "cre"),
                    email = "alexis.dinno@pdx.edu")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘api-get_datalog.R’ ‘api-get_device.R’ ‘api-get_devices.R’
    ‘api-get_element.R’ ‘api-get_elements.R’ ‘api-get_project.R’
    ‘api-get_projects.R’ ‘api-get_users_me.R’ ‘client.R’
Maintainer: ‘Mary C Meyer <meyer@stat.colostate.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mary", "C"),
                    family = "Meyer",
                    role = c("aut", "cre"),
                    email = "meyer@stat.colostate.edu")
as necessary.
Maintainer: ‘Josep Puig <puigjos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Josep", "Puig"),
                      family = "Sallés",
                      role = "aut"),
               person(given = "Josep",
                      family = "Puig",
                      role = "cre",
                      email = "puigjos@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
incidents 6.964  0.037   4.302
Maintainer: ‘Angelo Mazza <a.mazza@unict.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Antonio",
                      family = "Punzo",
                      role = "aut"),
               person(given = "Angelo",
                      family = "Mazza",
                      role = c("aut", "cre"),
                      email = "a.mazza@unict.it"),
               person(given = c("Paul", "D."),
                      family = "McNicholas",
                      role = "aut"))
as necessary.
Maintainer: ‘Pedro L. Rodriguez <pedro.rodriguezsosa@gmail.com>’

The Description field contains
  approach developed by Khodak et al. (2018) <arXiv:1805.05388> and
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
get_nns 5.553  0.077   6.322
Maintainer: ‘Robin K. S. Hankin <hankin.robin@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Robin", "K.", "S."),
                    family = "Hankin",
                    role = c("aut", "cre"),
                    email = "hankin.robin@gmail.com")
as necessary.
Maintainer: ‘Carl Witthoft <cellocgw@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carl",
                    family = "Witthoft",
                    role = c("aut", "cre"),
                    email = "cellocgw@gmail.com")
as necessary.
Maintainer: ‘Nicholas Hamilton <n.hamilton@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nicholas",
                    family = "Hamilton",
                    role = c("aut", "cre"),
                    email = "n.hamilton@unsw.edu.au")
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) getConvexHull.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getConvexHull.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getConvexHull.Rd:30: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Tony Murphy <tonymurphy55.am@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tony",
                    family = "Murphy",
                    role = c("aut", "cre"),
                    email = "tonymurphy55.am@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cumulative_split_code.Rd’ ‘decompose_contrasts.Rd’
    ‘expand_formulas.R’ ‘factor_coercion_messages.R’
    ‘glimpse_contrasts.R’ ‘make_parameters.R’ ‘orth_polynomial_code.Rd’
    ‘raw_polynomial_code.Rd’ ‘use_contrast.R’ ‘utils_check_labels.R’
    ‘utils_trymatch.R’
Maintainer: ‘Zijian Guo <zijguo@stat.rutgers.edu>’

The Description field contains
  when the model is known ('Guo and Small' (2016) <arXiv:1602.01051>) and
  <arXiv:2010.09922>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ben C. Ubah <ubah.ben22@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Ben", "C."),
                    family = "Ubah",
                    role = c("aut", "cre"),
                    email = "ubah.ben22@gmail.com")
as necessary.
Maintainer: ‘Eric S. Kawaguchi <erickawaguchi@ucla.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Eric", "S."),
                    family = "Kawaguchi",
                    role = c("aut", "cre"),
                    email = "erickawaguchi@ucla.edu")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  curve_cont.Rd: riskRegression
  plot_surv_3Dsurface.Rd: riskRegression
  plot_surv_animated.Rd: riskRegression, facet_wrap
  plot_surv_area.Rd: riskRegression, facet_wrap
  plot_surv_at_t.Rd: riskRegression, facet_wrap
  plot_surv_contour.Rd: riskRegression, ggplot2, facet_wrap
  plot_surv_heatmap.Rd: riskRegression, facet_wrap
  plot_surv_lines.Rd: riskRegression, facet_wrap
  plot_surv_matrix.Rd: riskRegression, facet_wrap
  plot_surv_quantiles.Rd: riskRegression, facet_wrap
  plot_surv_rmst.Rd: riskRegression, facet_wrap
  plot_surv_rmtl.Rd: riskRegression, facet_wrap
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
conv.ann 3.745  0.036    5.16
Maintainer: ‘Gordon Shotwell <g.e.shotwell@gmail.com>’

Found the following (possibly) invalid file URI:
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Daniel M. Griffith <griffith.dan@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Daniel", "M."),
                      family = "Griffith",
                      role = c("aut", "cre"),
                      email = "griffith.dan@gmail.com"),
               person(given = c("Joseph", "A."),
                      family = "Veech",
                      role = "aut"),
               person(given = c("Charles", "J."),
                      family = "Marsh",
                      role = "aut"))
as necessary.

File 'R/cooccur-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
checkRd: (-1) CovrgPlot.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{plotCI}{a vector of up to 4 numbers out of the set {1,2,3,4}, corresponding to which
       |                                                          ^
Specified C++11: please drop specification unless essential
Maintainer: ‘Jochen Staudacher <jochen.staudacher@hs-kempten.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Drew Schmidt <wrathematics@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘John Hughes <drjphughesjr@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Emily",
                      family = "Goren",
                      role = "aut",
                      email = "emily.goren@gmail.com"),
               person(given = "John",
                      family = "Hughes",
                      role = c("aut", "cre"),
                      email = "drjphughesjr@gmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) copCAR.Rd:40: Lost braces
    40 |        item{\code{maxit}}{the maximum number of iterations to be used by \code{\link{optim}} when optimizing the objective function. Defaults to \code{1000}.}
       |            ^
checkRd: (-1) copCAR.Rd:40: Lost braces
    40 |        item{\code{maxit}}{the maximum number of iterations to be used by \code{\link{optim}} when optimizing the objective function. Defaults to \code{1000}.}
       |                          ^
Maintainer: ‘Fuyuan David Li <LFY@gwmail.gwu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Fuyuan", "David"),
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "lfy@gwmail.gwu.edu")
as necessary.
checkRd: (-1) condQestCopC.Rd:45: Lost braces; missing escapes or markup?
    45 | obtain the conditional qth quantile of Y_{n+1} given {Y1,...,Yn}.
       |                                          ^
checkRd: (-1) condQestCopC.Rd:45: Lost braces; missing escapes or markup?
    45 | obtain the conditional qth quantile of Y_{n+1} given {Y1,...,Yn}.
       |                                                      ^
checkRd: (-1) condQestCopC.Rd:40: Lost braces; missing escapes or markup?
    40 | \code{condQestCopC} returns the conditional tao-th quantile of Y_{n+1} given {Y1,...,Yn}
       |                                                                  ^
checkRd: (-1) condQestCopC.Rd:40: Lost braces; missing escapes or markup?
    40 | \code{condQestCopC} returns the conditional tao-th quantile of Y_{n+1} given {Y1,...,Yn}
       |                                                                              ^
Maintainer: ‘MA Jian <majian03@gmail.com>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘construct_empirical_copula.Rd’:
    \keyword{empirical copula; rank}
  File ‘entknn.Rd’:
    \keyword{entropy; kNN}
checkRd: (-1) ComputeCope.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:54-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ComputeCope.Rd:57-61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) DrawContour.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Draws the contour {f=c}.}
       |                          ^
checkRd: (-1) DrawContour.Rd:20: Lost braces; missing escapes or markup?
    20 | Draws the contour {f=c}.
       |                   ^
checkRd: (-1) cope.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cope.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cope.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cope.Rd:35: Lost braces in \itemize; meant \describe ?
Examples with CPU (user + system) or elapsed time > 5s
      user system elapsed
cope 7.119  0.087   9.189
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cophe.prepare.dat.susie.Rd: runsusie
  cophe.susie.Rd: check_dataset, runsusie
  cophe.susie.lbf.Rd: runsusie
  cophe_heatmap.Rd: pheatmap
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jiajing Zheng <carolinez6850@gmail.com>’

The Description field contains
  Inference with Unobserved Confounding <arXiv:2102.09412>, with Gaussian
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bcalibrate.Rd: kEstimate, pca
  cal_rv.Rd: kEstimate, pca
  gcalibrate.Rd: kEstimate, pca
  plot_estimates.Rd: theme
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Simon Boge Brant <simbrant91@gmail.com>’

The Description field contains
  via gradient boosting [Brant, Hobæk Haff (2022); <arXiv:2208.04669>].
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Bouchra R. Nasri <bouchra.nasri@umontreal.ca>’

The Description field contains
  <arXiv:2301.13408>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Takeshi Emura <takeshiemura@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Takeshi",
                      family = "Emura",
                      role = c("aut", "cre"),
                      email = "takeshiemura@gmail.com"),
               person(given = "Xinwei",
                      family = "Huang",
                      role = "aut"),
               person(given = "Ting-Hsuan",
                      family = "Long",
                      role = "aut"),
               person(given = "Li-Hsien",
                      family = "Sun",
                      role = "aut"))
as necessary.
Maintainer: ‘Xin-Wei Huang <xinweihuang@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xin-Wei",
                      family = "Huang",
                      role = c("aut", "cre"),
                      email = "xinweihuang@hotmail.com"),
               person(given = "Takeshi",
                      family = "Emura",
                      role = "aut"))
as necessary.
Maintainer: ‘Lei Yang <leiyangslu@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Lei",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "leiyangslu@gmail.com")
as necessary.
Maintainer: ‘Shuang Song <song-s19@mails.tsinghua.edu.cn>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wei",
                      family = "Jiang",
                      role = "aut"),
               person(given = "Shuang",
                      family = "Song",
                      role = c("aut", "cre"),
                      email = "song-s19@mails.tsinghua.edu.cn"),
               person(given = "Lin",
                      family = "Hou",
                      role = "aut"),
               person(given = "Hongyu",
                      family = "Zhao",
                      role = "aut"))
as necessary.
Maintainer: ‘Andrei Boutyline <aboutyl@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrei",
                    family = "Boutyline",
                    role = c("aut", "cre"),
                    email = "aboutyl@umich.edu")
as necessary.
Maintainer: ‘Xi (Rossi) LUO <xi.rossi.luo@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xi",
                      family = "LUO",
                      role = "aut",
                      comment = "Rossi"),
               person(given = "Florentina",
                      family = "Bunea",
                      role = "aut"),
               person(given = "Christophe",
                      family = "Giraud",
                      role = "aut"),
               person(given = "Xi",
                      family = "LUO",
                      role = "cre",
                      email = "xi.rossi.luo@gmail.com",
                      comment = "Rossi"))
as necessary.

The Description field contains
  distributions.  Read http://arxiv.org/abs/1508.01939 for more details.
Please enclose URLs in angle brackets (<...>).
The Description field contains
  distributions.  Read http://arxiv.org/abs/1508.01939 for more details.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CoreCollection.Rd: R6Class
  dot-CoreCollectionClass.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) getSurface.Rd:22: Lost braces
    22 | value \code{getSurface} shortens the output of \code{conv} to remove artificial surface layers. The output is thus a subset of the input, and identical in structure to the /code{conv} output.
       |                                                                                                                                                                                  ^
Maintainer: ‘Taylor Arnold <tarnold2@richmond.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Taylor",
                      family = "Arnold",
                      role = c("aut", "cre"),
                      email = "tarnold2@richmond.edu"),
               person(given = "Lauren",
                      family = "Tilton",
                      role = "aut"))
as necessary.
Maintainer: ‘Guoli Sun <guolisun87@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alex",
                      family = "Krasnitz",
                      role = "aut"),
               person(given = "Guoli",
                      family = "Sun",
                      role = c("aut", "cre"),
                      email = "guolisun87@gmail.com"))
as necessary.
Maintainer: ‘Santhosh Sasanapuri <santhosh458@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Navin",
                      family = "Loganathan",
                      role = "aut"),
               person(given = "Mohan",
                      family = "Manivannan",
                      role = "aut"),
               person(given = "Santhosh",
                      family = "Sasanapuri",
                      role = c("aut", "cre"),
                      email = "santhosh458@gmail.com"),
               person(given = "LatentView",
                      family = "Analytics",
                      role = "ctb"))
as necessary.
Maintainer: ‘John Ferguson <john.ferguson@nuigalway.ie>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘linkd.Rd’:
    \keyword{Feligi/Sunter,}
    \keyword{algorithm,}
    \keyword{class,}
    \keyword{linkage,}
Maintainer: ‘Niklas Pfister <np@math.ku.dk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Niklas",
                      family = "Pfister",
                      role = c("aut", "cre"),
                      email = "np@math.ku.dk"),
               person(given = "Sebastian",
                      family = "Weichwald",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘refresh_coronvirus.R’
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Juliane",
                      family = "Schafer",
                      role = "aut"),
               person(given = "Rainer",
                      family = "Opgen-Rhein",
                      role = "aut"),
               person(given = "Verena",
                      family = "Zuber",
                      role = "aut"),
               person(given = "Miika",
                      family = "Ahdesmaki",
                      role = "aut"),
               person(given = c("A.", "Pedro", "Duarte"),
                      family = "Silva",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Maintainer: ‘Kasper Welbers <kasperwelbers@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kasper",
                      family = "Welbers",
                      role = c("aut", "cre"),
                      email = "kasperwelbers@gmail.com"),
               person(given = "Wouter",
                      family = "van Atteveldt",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  tCorpus-cash-annotate_rsyntax.Rd: tquery
  tCorpus-cash-subset.Rd: subset.data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Rohan Reddy Tummala <rohantummala@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Rohan", "Reddy"),
                    family = "Tummala",
                    role = c("aut", "cre"),
                    email = "rohantummala@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  corrarray.Rd: rcorr
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Specified C++11: please drop specification unless essential
Maintainer: ‘Prabina Kumar Meher <meherprabin@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Prabina", "Kumar", "Meher", "&", "A.", "R."),
                      family = "Rao",
                      role = "aut"),
               person(given = c("Prabina", "Kumar"),
                      family = "Meher",
                      role = "cre",
                      email = "meherprabin@yahoo.com"))
as necessary.
Maintainer: ‘Weiliang Qiu <stwxq@channing.harvard.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bernard",
                      family = "Rosner",
                      role = "aut"),
               person(given = "Shelley",
                      family = "Tworoger",
                      role = "aut"),
               person(given = "Weiliang",
                      family = "Qiu",
                      role = c("aut", "cre"),
                      email = "stwxq@channing.harvard.edu"))
as necessary.
Maintainer: ‘Abbas Rahal <Abbas.Rahal13@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Abbas",
                      family = "Rahal",
                      role = c("aut", "cre"),
                      email = "abbas.rahal13@gmail.com"),
               person(given = "Anna",
                      family = "Akpawu",
                      role = "aut"),
               person(given = "Justin",
                      family = "Chitpin",
                      role = "aut"),
               person(given = c("David", "R."),
                      family = "Bickel",
                      role = "aut"))
as necessary.
Maintainer: ‘Gary Witt <gary.witt@temple.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chris",
                      family = "Rohlfs",
                      role = "aut"),
               person(given = "Gary",
                      family = "Witt",
                      role = c("aut", "cre"),
                      email = "gary.witt@temple.edu"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ggbplot.Rd: bplot
  tally.Rd: bplot, calibrate
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  corrgrapher.Rd: visNetwork
  plot.corrgrapher.Rd: visNetwork
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  polycorr.Rd: polychor
  tetracorr.Rd: polychor
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Wim Van der Elst <Wim.vanderelst@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Wim",
                      family = "Van der Elst",
                      role = c("aut", "cre"),
                      email = "wim.vanderelst@gmail.com"),
               person(given = "Geert",
                      family = "Molenberghs",
                      role = "aut"),
               person(given = "Dieter",
                      family = "Hilgers",
                      role = "aut"),
               person(given = c("&", "Nicole"),
                      family = "Heussen",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘corrRect.hclust.Rd’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  rplot.Rd: geom_point
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Michael G. Campana <campanam@si.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "G."),
                    family = "Campana",
                    role = c("aut", "cre"),
                    email = "campanam@si.edu")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

The BugReports field in DESCRIPTION has
  https://github.com/campanam/rCorrSieve
which should likely be
  https://github.com/campanam/rCorrSieve/issues
instead.
Maintainer: ‘Ran Gao <rgao8@uic.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Rawan",
                      family = "Allozi",
                      role = "aut"),
               person(given = "Hakan",
                      family = "Demirtas",
                      role = "aut"),
               person(given = "Ran",
                      family = "Gao",
                      role = c("aut", "cre"),
                      email = "rgao8@uic.edu"))
as necessary.
Maintainer: ‘Alan Inglis <alan.n.inglis@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Alan",
                    family = "Inglis",
                    role = c("aut", "cre"),
                    email = "alan.n.inglis@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘corrBarplot.R’ ‘corrNetwork.R’
Maintainer: ‘Fran Urbano <viraltux@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Fran",
                    family = "Urbano",
                    role = c("aut", "cre"),
                    email = "viraltux@gmail.com")
as necessary.
Maintainer: ‘Danyang Yu <dyu33@jhu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Danyang",
                      family = "Yu",
                      role = c("aut", "cre"),
                      email = "dyu33@jhu.edu"),
               person(given = "Weiliang",
                      family = "Qiu",
                      role = "aut"),
               person(given = "Zeyu",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Kimberly",
                      family = "Glass",
                      role = "aut"),
               person(given = "Jessica",
                      family = "Su",
                      role = "aut"),
               person(given = c("Dawn", "L."),
                      family = "DeMeo",
                      role = "aut"),
               person(given = "Kelan",
                      family = "Tantisira",
                      role = "aut"),
               person(given = c("Scott", "T."),
                      family = "Weiss",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
corto 1.524  0.108   5.526
Maintainer: ‘Augustin Mutak <mutak94@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Augustin",
                    family = "Mutak",
                    role = c("aut", "cre"),
                    email = "mutak94@gmail.com")
as necessary.
Maintainer: ‘Michael Sachs <sachsmc@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Sachs",
                    role = c("aut", "cre"),
                    email = "sachsmc@gmail.com")
as necessary.
Maintainer: ‘Andrew Harris <harris@astro.umd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andrew",
                    family = "Harris",
                    role = c("aut", "cre"),
                    email = "harris@astro.umd.edu")
as necessary.
checkRd: (-1) cosmoFns-package.Rd:34: Escaped LaTeX specials: \&
Maintainer: ‘Yanlin Tang <yanlintang2018@163.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yanlin",
                      family = "Tang",
                      role = c("aut", "cre"),
                      email = "yanlintang2018@163.com"),
               person(given = c("Huixia", "Judy"),
                      family = "Wang",
                      role = "aut"))
as necessary.
Maintainer: ‘David Cortes <david.cortes.rivera@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "David",
                    family = "Cortes",
                    role = c("aut", "cre"),
                    email = "david.cortes.rivera@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ctmaAllInvFit.Rd: ctStanFit
  ctmaFit.Rd: ctStanFit, ctsem
  ctmaInit.Rd: ctStanFit, ctsem
  ctmaOptimizeFit.Rd: ctStanFit
  ctmaOptimizeInit.Rd: ctStanFit
  ctmaPlotCtsemMod.Rd: ctsem
  ctmaScaleInits.Rd: ctStanFit
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘A. Christian Silva <a.christian.silva@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("A.", "Christian"),
                    family = "Silva",
                    role = c("aut", "cre"),
                    email = "a.christian.silva@gmail.com")
as necessary.
Maintainer: ‘Ivan Fernandez-Val <ivanf@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mingli",
                      family = "Chen",
                      role = "aut"),
               person(given = "Victor",
                      family = "Chernozhukov",
                      role = "aut"),
               person(given = "Ivan",
                      family = "Fernandez-Val",
                      role = c("aut", "cre"),
                      email = "ivanf@bu.edu"),
               person(given = "Blaise",
                      family = "Melly",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
RandomSearchClassif 6.143  0.337   8.457
RandomSearchRegr    5.956  0.206   7.401
Maintainer: ‘Jaroslaw Chilimoniuk <jaroslaw.chilimoniuk@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) summary_fitlist.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Kellie Archer <archer.43@osu.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Timo Adam <timo.adam@uni-bielefeld.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Timo",
                    family = "Adam",
                    role = c("aut", "cre"),
                    email = "timo.adam@uni-bielefeld.de")
as necessary.

The Description field contains
  Hidden Markov Models for Time Series of Counts. <arXiv:1901.03275>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘psRes.Rd’:
    https://doi.org/10.1201/b20790
  File ‘stateDec.Rd’:
    https://doi.org/10.1201/b20790
Maintainer: ‘Andrew Robinson <apro@unimelb.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Joseph", "M"),
                      family = "Hilbe",
                      role = "aut",
                      email = "hilbe@asu.edu"),
               person(given = "Andrew",
                      family = "Robinson",
                      role = "cre",
                      email = "apro@unimelb.edu.au"))
as necessary.
checkRd: (-1) fasttrakg.Rd:18: Lost braces
    18 |     \item{\code{killip}}{Killip level of cardiac event severity (1-4)age75}{1= Age>75; 0=Age<=75}
       |                                                                            ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ml.nb1.Rd: glm.nb
  ml.nb2.Rd: glm.nb
  ml.nbc.Rd: glm.nb
  ml.pois.Rd: glm.nb
  modelfit.Rd: glm.nb
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Author field differs from that derived from Authors@R
  Author:    ‘Francesco Saverio Bellelli [aut, cre, cph] (https://fbellelli.com/)’
  Authors@R: ‘Francesco Saverio Bellelli [aut, cre, cph] (Website: https://fbellelli.com/)’
Maintainer: ‘David M. Smith <dmccsmith@verizon.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("David", "M"),
                      family = "Smith",
                      role = "aut"),
               person(given = c("Malcolm", "J"),
                      family = "Faddy",
                      role = "aut"),
               person(given = c("David", "M."),
                      family = "Smith",
                      role = "cre",
                      email = "dmccsmith@verizon.net"))
as necessary.
Maintainer: ‘Anna Neufeld <aneufeld@fredhutch.org>’

The Description field contains
  <arXiv:2307.12985>. Intended for turning a matrix of single-cell RNA
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Brian King <brianking387@gmail.com>’

The Description field contains
  King and Kowal (2022) <arXiv:2110.14790>, and Kowal and Wu (2023)
  <arXiv:2110.12316>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Zeyu Zhang <zhzyvv@gmail.com>’

The Description field contains
  CP, Weiss ST, Qiu W. (2019) <doi.org/10.1038/s41598-019-41315-w>.
Please write DOIs as <doi:prefix/suffix>.
Maintainer: ‘Tanujit Chakraborty <tanujitisi@gmail.com>’

The Description field contains
  is based on the algorithms by Liu et al. (2023) <arXiv:2311.14359>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
output_summary 4.256  0.057   5.248
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
DABCD.sim 5.718  0.002   7.281
KER.sim   5.534  0.015   6.685
ECADE.sim 5.087  0.004   6.315
Maintainer: ‘Sandra De Iaco <sandra.deiaco@unisalento.it>’

Package has help file(s) containing later-stage \Sexpr{} expressions
but no 'build/stage23.rdb' file.
Maintainer: ‘Deniz Akdemir <deniz.akdemir.work@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Deniz",
                      family = "Akdemir",
                      role = c("aut", "cre"),
                      email = "deniz.akdemir.work@gmail.com"),
               person(given = "Mohamed",
                      family = "Somo",
                      role = "aut"),
               person(given = c("Julio", "Isidro"),
                      family = "Sanchez",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  <https://www.biorxiv.org/content/10.1101/857425v1>.  It can be used to
Please use permanent DOI markup for linking to publications as in <doi:prefix/suffix>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Michael Kirchner <michael@kirchner.io>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Kirchner",
                    role = c("aut", "cre"),
                    email = "michael@kirchner.io")
as necessary.
Found the following files/directories:
  ‘covfefe_inauguration.txt’
Maintainer: ‘Marcelo Ponce <m.ponce@utoronto.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Marcelo",
                      family = "Ponce",
                      role = c("aut", "cre"),
                      email = "m.ponce@utoronto.ca"),
               person(given = "Amit",
                      family = "Sandhel",
                      role = "ctb"))
as necessary.
Maintainer: ‘Max Salvatore <mmsalva@umich.edu>’

Found the following (possibly) invalid file URI:
  URI: twitter.com/MaxSalTweets
    From: README.md
Maintainer: ‘Peter Hoff <peter.hoff@duke.edu>’

The Description field contains
  McCormack and Zhang (2022) <arXiv:2207.12484> "Core Shrinkage
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Hana Sevcikova <hanas@uw.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Naisyin",
                      family = "Wang",
                      role = "aut",
                      email = "nwangaa@umich.edu"),
               person(given = c("Adrian", "Raftery", "with", "contributions", "from", "Chris", "Fraley"),
                      family = "<fraley@uw.edu>",
                      role = "aut",
                      email = "fraley@uw.edu"),
               person(given = "Hana",
                      family = "Sevcikova",
                      role = "cre",
                      email = "hanas@uw.edu"))
as necessary.
File ‘covr/libs/covr.so’:
  Found non-API calls to R: ‘BODY’, ‘CLOENV’, ‘FORMALS’, ‘SET_BODY’,
    ‘SET_CLOENV’, ‘SET_FORMALS’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Maintainer: ‘Shahin Tavakoli <s.tavakoli@warwick.ac.uk>’

The Description field contains
  <https://projecteuclid.org/euclid.aos/1498636862> <arXiv:1505.02023>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Ben Barnard <ben_barnard@outlook.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘covTestR-package.Rd’:
    http://doi.org/10.1016/j.csda.2007.03.004
    http://doi.org/10.1016/j.jmva.2010.07.004
  File ‘homogeneityStatistics.Rd’:
    http://doi.org/10.1080/15598608.2017.1308895
    http://doi.org/10.3923/jas.2013.270.277
    http://doi.org/10.1016/j.jspi.2015.10.007
    http://doi.org/10.1016/S0378-3758(00)00209-3
    http://doi.org/10.1016/j.csda.2007.03.004
    http://doi.org/10.1016/j.jmva.2014.06.003
    http://doi.org/10.1016/j.jmva.2009.12.010
  File ‘structureStatistics.Rd’:
    http://doi.org/10.1080/00949655.2014.948441
    http://doi.org/10.1198/jasa.2010.tm09560
    http://doi.org/10.1016/j.jspi.2011.07.019
    http://doi.org/10.1214/aos/1031689018
    http://doi.org/10.14490/jjss.35.251
    http://doi.org/10.1016/j.jmva.2011.03.003
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
test_srcrefs       4.709  0.572   7.482
test_srcrefs_df    4.563  0.674   6.943
trace_srcrefs_df   4.427  0.664   7.002
test_trace_mapping 4.340  0.641   5.978
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  axis_canvas.Rd: ggplot2, coord_flip
  background_grid.Rd: theme
  draw_line.Rd: geom_path
  draw_text.Rd: geom_label
  ggsave2.Rd: ggsave
  insert_xaxis_grob.Rd: ggplot2
  save_plot.Rd: ggsave
  theme_minimal_grid.Rd: theme_minimal
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘"Kropko, Jonathan" <jkropko@virginia.edu>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘baseline.build.Rd’:
    https://doi.org/10.1017/psrm.2018.19
  File ‘bca.Rd’:
    https://doi.org/10.1214/ss/1032280214
  File ‘coxed-package.Rd’:
    https://doi.org/10.1017/psrm.2018.19
    https://doi.org/10.1017/S000712341700045X
    https://doi.org/10.1137/0904045
    https://doi.org/10.1017/S0007123403000140
    https://doi.org/10.1002/sim.3092
    http://dx.doi.org/10.1080/01621459.2016.1180986
  File ‘coxed.Rd’:
    https://doi.org/10.1017/S000712341700045X
    https://doi.org/10.1214/ss/1032280214
  File ‘coxed.gam.Rd’:
    https://doi.org/10.1017/S000712341700045X
    http://dx.doi.org/10.1080/01621459.2016.1180986
  File ‘coxed.gam.tvc.Rd’:
    https://doi.org/10.1017/S000712341700045X
  File ‘coxed.npsf.Rd’:
    https://doi.org/10.1017/S000712341700045X
  File ‘coxed.npsf.tvc.Rd’:
    https://doi.org/10.1017/S000712341700045X
  File ‘generate.lm.Rd’:
    https://doi.org/10.1017/psrm.2018.19
  File ‘martinvanberg.Rd’:
    https://doi.org/10.1017/S0007123403000140
  File ‘sim.survdata.Rd’:
    https://doi.org/10.1017/psrm.2018.19
  File ‘survsim.plot.Rd’:
    https://doi.org/10.1017/psrm.2018.19
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  coxed.Rd: mgcv, rms
  coxed.gam.Rd: mgcv
  coxed.gam.tvc.Rd: mgcv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘coxphf-tidiers.R’
Maintainer: ‘Jing Peng <pengjing@live.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jing",
                    family = "Peng",
                    role = c("aut", "cre"),
                    email = "pengjing@live.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Hyeri You <h2you@health.ucsd.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hyeri",
                      family = "You",
                      role = c("aut", "cre"),
                      email = "h2you@health.ucsd.edu"),
               person(given = "Ronghui",
                      family = "Xu",
                      role = "aut"))
as necessary.
checkRd: (-1) gen_data.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gen_data.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gen_data.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot.coxr.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot.coxr.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot.coxr.Rd:38-39: Lost braces in \itemize; \value handles \item{}{} directly
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  coxr.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Bella Vakulenko-Lagun <bella.vakulenko-lagun@mail.huji.ac.il>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bella",
                      family = "Vakulenko-Lagun",
                      role = c("aut", "cre"),
                      email = "bella.vakulenko-lagun@mail.huji.ac.il"),
               person(given = "Micha",
                      family = "Mandel",
                      role = "aut"),
               person(given = c("Rebecca", "A."),
                      family = "Betensky",
                      role = "aut"))
as necessary.
Specified C++11: please drop specification unless essential
checkRd: (-1) coxph.RT.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) coxph.RT.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) coxph.RT.Rd:59-71: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Feng Chen <feng.chen@unsw.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Feng",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "feng.chen@unsw.edu.au")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  coxsei-package.Rd: survival
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Quentin Giai Gianetto <quentin2g@yahoo.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Quentin", "Giai"),
                      family = "Gianetto",
                      role = c("aut", "cre"),
                      email = "quentin2g@yahoo.fr"),
               person(given = "Florence",
                      family = "Combes",
                      role = "aut"),
               person(given = "Claire",
                      family = "Ramus",
                      role = "aut"),
               person(given = "Christophe",
                      family = "Bruley",
                      role = "aut"),
               person(given = "Yohann",
                      family = "Couté",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Burger",
                      role = "aut"))
as necessary.
Maintainer: ‘Alessandro Bellino <alessandro_bellino@gmx.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Arunabha Majumdar <statgen.arunabha@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arunabha",
                      family = "Majumdar",
                      role = c("aut", "cre"),
                      email = "statgen.arunabha@gmail.com"),
               person(given = "Tanushree",
                      family = "Haldar",
                      role = "aut",
                      email = "tanushree.haldar@gmail.com"),
               person(given = "John",
                      family = "Witte",
                      role = "ctb"))
as necessary.
Maintainer: ‘Yongwen Zhuang <zyongwen@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Yongwen",
                    family = "Zhuang",
                    role = c("aut", "cre"),
                    email = "zyongwen@umich.edu")
as necessary.
Specified C++11: please drop specification unless essential
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CPC.Rd: diana, pam, dbscan
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘R Barfield <barfieldrichard8@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(family = "Barfield",
                      role = "aut"),
               person(family = "R.",
                      role = "aut"),
               person(family = "Conneely",
                      role = "aut"),
               person(family = "K.",
                      role = "aut"),
               person(family = "Kilaru,V",
                      role = "aut"),
               person(given = "R",
                      family = "Barfield",
                      role = "cre",
                      email = "barfieldrichard8@gmail.com"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
cpg.perm 4.035  0.001   5.611
Maintainer: ‘Jun Chen <chen.jun2@mayo.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jun",
                    family = "Chen",
                    role = c("aut", "cre"),
                    email = "Chen.Jun2@mayo.edu")
as necessary.
Maintainer: ‘Jeremie Riou <jeremie.riou@univ-angers.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jeremie",
                      family = "Riou",
                      role = c("aut", "cre"),
                      email = "jeremie.riou@univ-angers.fr"),
               person(given = "Benoit",
                      family = "Liquet",
                      role = "aut"))
as necessary.
Maintainer: ‘Gordon J. Ross <gordon@gordonjross.co.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Gordon", "J."),
                    family = "Ross",
                    role = c("aut", "cre"),
                    email = "gordon@gordonjross.co.uk")
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘cpp11qpdf/libs/cpp11qpdf.so’:
  Found ‘_ZSt4cerr’, possibly from ‘std::cerr’ (C++)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘__printf_chk’, possibly from ‘printf’ (C)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘putchar’, possibly from ‘putchar’ (C)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘srandom’, possibly from ‘srandom’ (C)
    Object: ‘libqpdf/libstatqpdf.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘libqpdf/libstatqpdf.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Maintainer: ‘Luiz O. Gavião <luiz.gaviao67@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Luiz", "O."),
                      family = "Gavião",
                      role = c("aut", "cre"),
                      email = "luiz.gaviao67@gmail.com"),
               person(given = c("Annibal", "P."),
                      family = "Sant'Anna",
                      role = "aut"),
               person(given = c("Gilson", "B.A."),
                      family = "Lima",
                      role = "aut"),
               person(given = c("Pauli", "A.A."),
                      family = "Garcia.",
                      role = "aut"))
as necessary.
Maintainer: ‘Vincent Larmet <larmet.vincent@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Vincent",
                    family = "Larmet",
                    role = c("aut", "cre"),
                    email = "larmet.vincent@gmail.com")
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Andreas Kuehnapfel <andreas.kuehnapfel@imise.uni-leipzig.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Andreas",
                    family = "Kuehnapfel",
                    role = c("aut", "cre"),
                    email = "andreas.kuehnapfel@imise.uni-leipzig.de")
as necessary.
Maintainer: ‘Ning Yilin <ningyilinnyl@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ning",
                      family = "Yilin",
                      role = c("aut", "cre"),
                      email = "ningyilinnyl@gmail.com"),
               person(given = c("Tan", "Chuen"),
                      family = "Seng",
                      role = "aut"))
as necessary.
Maintainer: ‘Jacob Anhøj <jacob@anhoej.net>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jacob",
                      family = "Anhoej",
                      role = "aut"),
               person(given = "Jacob",
                      family = "Anhøj",
                      role = "cre",
                      email = "jacob@anhoej.net"))
as necessary.
Maintainer: ‘Taylor Brown <trb5me@virginia.edu>’

The Description field contains
  Doucet and Pitt (2017) <arXiv:1511.04992>. If the 'rho=' argument of
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Maintainer: ‘Stefanie Krügel <stefanie.kruegel@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Stefanie",
                      family = "Krügel",
                      role = c("aut", "cre"),
                      email = "stefanie.kruegel@gmail.com"),
               person(given = c("Alessandra", "R."),
                      family = "Brazzale"),
               person(role = "aut"),
               person(given = "Helmut",
                      family = "Kuechenhoff",
                      role = "aut"))
as necessary.
Maintainer: ‘Johann Gagnon-Bartsch <johanngb@umich.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Johann",
                    family = "Gagnon-Bartsch",
                    role = c("aut", "cre"),
                    email = "johanngb@umich.edu")
as necessary.
Maintainer: ‘Jueyu Gao <jueyu@ualberta.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jueyu", "Gao", "&", "Linglong"),
                      family = "Kong",
                      role = "aut"),
               person(given = "Jueyu",
                      family = "Gao",
                      role = "cre",
                      email = "jueyu@ualberta.ca"))
as necessary.
Maintainer: ‘Francesco Bartolucci <francesco.bartolucci@unipg.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Francesco",
                      family = "Bartolucci",
                      role = c("aut", "cre"),
                      email = "francesco.bartolucci@unipg.it",
                      comment = "University of Perugia"),
               person(given = "Claudia",
                      family = "Pigini",
                      role = "aut",
                      comment = "University of Ancona \"Politecnica delle Marche\""),
               person(given = "Francesco",
                      family = "Valentini",
                      role = "aut",
                      comment = "University of Ancona \"Politecnica delle Marche\""))
as necessary.
Maintainer: ‘Francis Huang <flhuang2000@yahoo.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) sharedat.Rd:23: Lost braces
    23 | \doi{10.7910/DVN/YXMQZM}{Harvard dataverse}
       |                         ^
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
summarize.posterior 4.088      0   5.061
Maintainer: ‘Carsten Franz <carsten.franz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Carsten",
                    family = "Franz",
                    role = c("aut", "cre"),
                    email = "carsten.franz@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘cleaning.R’
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
get_dep 4.05  0.191   5.821
Maintainer: ‘Jim Lemon <drjimlemon@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Lemon,",
                      role = "aut",
                      email = "drjimlemon@gmail.com"),
               person(given = "Jim",
                      family = "Lemon",
                      role = "cre",
                      email = "drjimlemon@gmail.com"))
as necessary.
Maintainer: ‘Gábor Csárdi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gábor",
                    family = "Csárdi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Nick Kunz <nick.kunz@columbia.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Nick",
                    family = "Kunz",
                    role = c("aut", "cre"),
                    email = "nick.kunz@columbia.edu")
as necessary.
Maintainer: ‘Devin S. Johnson <devin.johnson@noaa.gov>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) crwPredict.Rd:54-68: Lost braces
    54 | \item("predTime"){
       |                  ^
checkRd: (-1) crwPredict.Rd:59: Lost braces
    59 |  no longer the default (see \item{return.type}). If the original data were 
       |                                  ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘pick_colors.R’ ‘scale_crayons.Rd’
Author field differs from that derived from Authors@R
  Author:    ‘Josep Pueyo-Ros [aut, cre] (<https://orcid.org/0000-0002-1236-5651>), Marcelo S. Perlin [rev] (@msperlin), João Martins [rev] (@zambujo)’
  Authors@R: ‘Josep Pueyo-Ros [aut, cre] (ORCID: <https://orcid.org/0000-0002-1236-5651>), Marcelo S. Perlin [rev] (github: @msperlin), João Martins [rev] (github: @zambujo)’
Problems with news in ‘NEWS.md’:
No news entries found.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
training_model 4.838  0.131   5.311
Running ‘test-that.R’ [4s/5s]
Running the tests in ‘tests/test-that.R’ failed.
Complete output:
  > library(testthat)
  > library(creditr)
  
  IF YOU USE THIS creditr PACKAGE, YOUR USE WILL SIGNIFY YOUR
      UNDERSTANDING AND IRREVOCABLE ACCEPTANCE OF THIS LICENSE AND ITS
      TERMS, WHICH INCORPORATE BY REFERENCE THE INTERNATIONAL SWAPS AND
      DERIVATIVES ASSOCIATION, INC.'S CDS STANDARD MODEL PUBLIC LICENSE,
      WHICH IS AVAILABLE AT
      http://www.cdsmodel.com/cdsmodel/cds-disclaimer.page 
      before using the package.
      
  NOTHING IN THIS LICENSE RESTRICTS YOUR ABILITY TO USE
      THE ISDA(R) CDS STANDARD MODEL.
      
  DISCLAIMER: ISDA HAS NEITHER REVIEWED, APPROVED NOR ENDORSED THE 
      USE OF THE creditr PACKAGE. THOSE PERSONS USING THIS CDS PACKAGE 
      ARE ENCOURAGED TO SEEK THE ADVICE OF A LEGAL PROFESSIONAL TO EVALUATE 
      ITS SUITABILITY FOR THEIR USE.
      
  ISDA(R) is a registered mark of the International Swaps and
      Derivatives Association, Inc.
  > 
  > test_check("creditr")
  [ FAIL 1 | WARN 0 | SKIP 8 | PASS 110 ]
  
  ══ Skipped tests (8) ═══════════════════════════════════════════════════════════
  • empty test (8): 'test_CS10.R:3:1', 'test_IR_DV01.R:3:1',
    'test_add_conventions.R:11:1', 'test_get_rates.R:3:1',
    'test_rec_risk_01.R:3:1', 'test_spread_DV01.R:5:1',
    'test_spread_to_pd.R:3:1', 'test_upfront_to_spread.R:5:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_rates.R:101:3'): test that rates don't move `too much' day-over-day ──
  abs(rates.2 - rates.1)/rates.1 < 0.15 is not TRUE
  
  `actual`:       
  `expected`: TRUE
  
  [ FAIL 1 | WARN 0 | SKIP 8 | PASS 110 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Patrick Schnell <schnell.31@osu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Patrick",
                      family = "Schnell",
                      role = c("aut", "cre"),
                      email = "schnell.31@osu.edu"),
               person(given = "Brad",
                      family = "Carlin",
                      role = "aut"))
as necessary.
Maintainer: ‘Tinniam V Ganesh <tvganesh.85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Tinniam", "V"),
                    family = "Ganesh",
                    role = c("aut", "cre"),
                    email = "tvganesh.85@gmail.com")
as necessary.
Maintainer: ‘Jason D. Nielsen <jdn@math.carleton.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Jason", "D."),
                    family = "Nielsen",
                    role = c("aut", "cre"),
                    email = "drjdnielsen@gmail.com")
as necessary.
Maintainer: ‘Ashley Petersen <ashleyjpete@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ashley",
                    family = "Petersen",
                    role = c("aut", "cre"),
                    email = "ashleyjpete@gmail.com")
as necessary.
Maintainer: ‘Rubens Jose Rosa <rubens@rubensjoserosa.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Adam Kucharski <aqcharski@interia.pl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Adam",
                    family = "Kucharski",
                    role = c("aut", "cre"),
                    email = "aqcharski@interia.pl")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘CRMetrics.R’ ‘CRMetrics.Rd’ ‘inner_functions.R’
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
CRMetrics 4.257  0.355   5.591
Maintainer: ‘Henning Redestig <henning.red@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Henning",
                    family = "Redestig",
                    role = c("aut", "cre"),
                    email = "henning.red@gmail.com")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) normFit.Rd:39: Lost braces; missing escapes or markup?
    39 | {analytes}}
       | ^
checkRd: (-1) normPred.Rd:27: Lost braces
    27 | ode{standards}, \code{analytes}}
       |    ^
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
MinimalInformative 5.426  0.083   6.931
Maintainer: ‘Xiaowei Zhan <zhanxw@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Xiaowei",
                    family = "Zhan",
                    role = c("aut", "cre"),
                    email = "zhanxw@gmail.com")
as necessary.
Maintainer: ‘Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Mohamed", "El", "Fodil"),
                    family = "Ihaddaden",
                    role = c("aut", "cre"),
                    email = "ihaddaden.fodeil@gmail.com")
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘crop.R’ ‘helpers.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  get_multi_silodata.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Bjoern Bornkamp <bbnkmp@mail.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Martin", "Oliver"),
                      family = "Sailer",
                      role = "aut"),
               person(given = "Bjoern",
                      family = "Bornkamp",
                      role = "cre",
                      email = "bbnkmp@mail.de"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
netgraph.crossnma.model 4.006  0.241   6.128
Maintainer: ‘Kornelius Rohmeyer <rohmeyer@small-projects.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kornelius",
                    family = "Rohmeyer",
                    role = c("aut", "cre"),
                    email = "rohmeyer@small-projects.de")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
crossrunem 4.268  0.002   5.525
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘officer.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  filter_slider.Rd: tag, HTML
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Author field differs from that derived from Authors@R
  Author:    ‘Davis Weaver [aut, cre] (0000-0003-3086-497X)’
  Authors@R: ‘Davis Weaver [aut, cre] (orcid: 0000-0003-3086-497X)’
Running ‘testthat.R’ [30s/84s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(crosstalkr)
  > 
  > test_check("crosstalkr")
  [ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
  
  ══ Skipped tests (12) ══════════════════════════════════════════════════════════
  • On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
    'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
    'test-utils.R:17:3'
  • relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
  • relies on system file (2): 'test-calc_np.R:1:1',
    'test-node_suppression.R:1:1'
  • skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
    'test-ppi_ingest.R:9:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
  Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x558439ce8a80>), 
      "rb")`: cannot open the connection
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
    5. │ └─crosstalkr::supported_species()
    6. │   └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
    7. │     └─vroom::vroom(...)
    8. │       └─vroom:::vroom_(...)
    9. ├─base (local) `<fn>`(`<curl>`, "rb")
   10. └─base::open.connection(`<curl>`, "rb")
  
  [ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
  Error: Test failures
  Execution halted
Maintainer: ‘Pein Florian <f.pein@lancaster.ac.uk>’

The Description field contains
  <arXiv:2112.03220>. Can be customised by providing different
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Korbinian Strimmer <strimmerlab@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Korbinian",
                      family = "Strimmer.",
                      role = "aut"),
               person(given = "Korbinian",
                      family = "Strimmer",
                      role = "cre",
                      email = "strimmerlab@gmail.com"))
as necessary.
Maintainer: ‘Peter Meissner <retep.meissner@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Meissner",
                    role = c("aut", "cre"),
                    email = "retep.meissner@gmail.com")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Crossword.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Javier Espinosa <javier.espinosa.b@usach.cl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Javier",
                    family = "Espinosa",
                    role = c("aut", "cre"),
                    email = "javier.espinosa.b@usach.cl")
as necessary.
checkRd: (-1) confRegCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the constrained MLEs given beta_{0r}.}
       |                   ^
checkRd: (-1) confRegCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the constrained MLEs given beta_{0r}.}
       |                                                                                    ^
checkRd: (-1) confRegCCR.Rd:27: Lost braces; missing escapes or markup?
    27 | beta_{0r} in \code{paramVals}, which are those of interest, usually the ones
       |      ^
checkRd: (-1) confRegUCRandUCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the unconstrained MLEs given beta_{0r}.}
       |                   ^
checkRd: (-1) confRegUCRandUCCR.Rd:24: Lost braces; missing escapes or markup?
    24 | of interest, beta_{0r}, and the remaining ones are the unconstrained MLEs given beta_{0r}.}
       |                                                                                      ^
checkRd: (-1) confRegUCRandUCCR.Rd:27: Lost braces; missing escapes or markup?
    27 | beta_{0r} in \code{paramVals}, which are those of interest, usually the ones
       |      ^
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
crqa-package 4.181  0.382   5.202
Maintainer: ‘Aurelien Latouche <aurelien.latouche@cnam.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Bingqing",
                      family = "Zhou",
                      role = "aut"),
               person(given = "Aurelien",
                      family = "Latouche",
                      role = c("aut", "cre"),
                      email = "aurelien.latouche@cnam.fr"))
as necessary.
Maintainer: ‘Michael Klein <michael.klein@yale.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Michael",
                    family = "Klein",
                    role = c("aut", "cre"),
                    email = "michael.klein@yale.edu")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
getPoolSizes         6.594  0.012   7.204
getCoreK             6.116  0.004   7.297
makeFilteredImList   5.611  0.023   6.799
makeSubCoreList      5.510  0.008   6.951
getBestRsList        5.493  0.008   6.363
evaluateListOfIMs    5.066  0.022   7.029
getCoreRS            4.996  0.000   6.155
makePhaseTwoImList   4.913  0.008   5.820
makePhaseThreeImList 4.677  0.008   5.324
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  crsra_anonymize.Rd: digest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
crsra_import        2.219  0.887  11.940
crsra_import_course 1.627  1.046   9.901
'library' or 'require' call not declared from: ‘ggplot2’
Maintainer: ‘Dae Woong Ham <daewoongham@g.harvard.edu>’

The Description field contains
  to Test Causal Hypotheses in Conjoint Analysis" <arXiv:2201.08343>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Michael A Rotondi <mrotondi@yorku.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Michael", "A"),
                    family = "Rotondi",
                    role = c("aut", "cre"),
                    email = "mrotondi@yorku.ca")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
CRTpower 4.982  0.482   6.855
Missing dependency on R >= 4.2.0 because package code uses the pipe
  placeholder syntax added in R 4.2.0.
  File(s) using such syntax:
    ‘helpers.R’
Maintainer: ‘Benjamin M. Taylor <benjamin.taylor.software@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Benjamin", "M.", "Taylor", "Additional", "contributions", "Bikash", "Parida", "Jacob"),
                      family = "Davies",
                      role = "aut"),
               person(given = c("Benjamin", "M."),
                      family = "Taylor",
                      role = "cre",
                      email = "benjamin.taylor.software@gmail.com"))
as necessary.
checkRd: (-1) cruts-package.Rd:21: Lost braces
    21 | section{Dependencies}{
       |        ^
checkRd: (-1) cruts-package.Rd:21-24: Lost braces
    21 | section{Dependencies}{
       |                      ^
checkRd: (-1) cruts-package.Rd:26: Lost braces
    26 | section{Citation}{
       |        ^
checkRd: (-1) cruts-package.Rd:26-28: Lost braces
    26 | section{Citation}{
       |                  ^
checkRd: (-1) cruts-package.Rd:30-32: Lost braces
    30 | references{
       |           ^
Maintainer: ‘Ziqiang Lin <ziqiang.lin@nyulangone.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Ziqiang",
                      family = "Lin",
                      role = c("aut", "cre"),
                      email = "ziqiang.lin@nyulangone.org"),
               person(given = c("Eugene", "M"),
                      family = "Laska",
                      role = "aut"),
               person(given = c("Carole", "E"),
                      family = "Siegel",
                      role = "aut"),
               person(given = "Wangjian",
                      family = "Zhang",
                      role = "aut"),
               person(given = "Qiaoxuan",
                      family = "Lin",
                      role = "aut"),
               person(given = "Bo",
                      family = "Ye.",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘crypto_global_quotes.R’ ‘crypto_history.R’ ‘crypto_info.R’
    ‘crypto_listings.R’
Maintainer: ‘Vivian R. Steiger <viv.datascientist@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vivian", "R."),
                    family = "Steiger",
                    role = c("aut", "cre"),
                    email = "viv.datascientist@gmail.com")
as necessary.
Maintainer: ‘Haydar Demirhan <haydar.demirhan@rmit.edu.au>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Haydar",
                    family = "Demirhan",
                    role = c("aut", "cre"),
                    email = "haydar.demirhan@rmit.edu.au",
                    comment = c(ORCID = "0000-0002-8565-4710"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) calculate_cell_volume.Rd:16: Lost braces; missing escapes or markup?
    16 | V A real number. The volume (in angstroms^3 or angstroms^{-3})
       |                                                          ^
Maintainer: ‘Claudio Pozo Valenzuela <claudiopozova@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Claudio", "Pozo"),
                      family = "Valenzuela",
                      role = c("aut", "cre"),
                      email = "claudiopozova@gmail.com"),
               person(given = "Saddys",
                      family = "Rodriguez-Llamazares",
                      role = "aut"))
as necessary.
Maintainer: ‘Alessandra R. Brazzale <alessandra.brazzale@unipd.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("S", "original", "by", "Alessandra", "R.", "Brazzale.", "R", "port", "by", "Alessandra", "R.", "Brazzale"),
                      family = "<alessandra.brazzale@unipd.it>.",
                      role = "aut",
                      email = "alessandra.brazzale@unipd.it"),
               person(given = c("Alessandra", "R."),
                      family = "Brazzale",
                      role = "cre",
                      email = "alessandra.brazzale@unipd.it"))
as necessary.

Problems when reading CITATION file:
  It is recommended to use ‘given’ instead of ‘first’.
  It is recommended to use ‘given’ instead of ‘middle’.
  It is recommended to use ‘family’ instead of ‘last’.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Zhicheng Du<dgdzc@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Zhicheng",
                      family = "Du",
                      role = c("aut", "cre"),
                      email = "dgdzc@hotmail.com"),
               person(given = "Yuantao",
                      family = "Hao",
                      role = "aut"))
as necessary.
Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Sungwook",
                      family = "Kim",
                      role = "aut"),
               person(given = c("Michael", "P."),
                      family = "Fay",
                      role = "cre",
                      email = "mfay@niaid.nih.gov"))
as necessary.
Maintainer: ‘Peter Wu <peter123wu0@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Wu",
                    role = c("aut", "cre"),
                    email = "peter123wu0@gmail.com")
as necessary.
Maintainer: ‘Anantha Janakiraman <anantharaman.j@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Anantha",
                    family = "Janakiraman",
                    role = c("aut", "cre"),
                    email = "anantharaman.j@gmail.com")
as necessary.
Maintainer: ‘Koen W. De Bock <kdebock@audencia.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Koen", "W."),
                      family = "De Bock",
                      role = c("aut", "cre"),
                      email = "kdebock@audencia.com"),
               person(given = "Kristof",
                      family = "Coussement",
                      role = "aut"),
               person(given = "Stefan",
                      family = "Lessmann",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                              user system elapsed
symm_fit_ind_EM              6.058  0.055   6.471
symm_fit_ind_EM_noAssumption 6.016  0.078   6.564
Maintainer: ‘Aixiang Jiang <aijiang@bccrc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Aixiang",
                    family = "Jiang",
                    role = c("aut", "cre", "cph"),
                    email = "aijiang@bccrc.ca",
                    comment = c(ORCID = "0000-0002-6153-7595"))
as necessary.

The Description field contains
  <arXiv:1603.02754>, - Aoki et al. (2023) <doi:10.1200/JCO.23.01115>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
csmpvModelling 4.912  0.124   6.071
Maintainer: ‘Dmitry Pavlyuk <Dmitry.V.Pavlyuk@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Dmitry",
                      family = "Pavlyuk",
                      role = c("aut", "cre"),
                      email = "dmitry.v.pavlyuk@gmail.com"),
               person(given = "Eugene",
                      family = "Girtcius",
                      role = "aut"))
as necessary.
Maintainer: ‘Junho Yang <junhoyang@stat.tamu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Junho",
                    family = "Yang",
                    role = c("aut", "cre"),
                    email = "junhoyang@stat.tamu.edu")
as necessary.
Maintainer: ‘Caleb Lucas <calebjlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Caleb",
                      family = "Lucas",
                      role = c("aut", "cre"),
                      email = "calebjlucas@gmail.com",
                      comment = "https://caleblucas.com/"),
               person(given = "Joshua",
                      family = "McCrain",
                      role = "aut",
                      comment = "http://joshuamccrain.com/"))
as necessary.
Maintainer: ‘Caleb Lucas <calebjlucas@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Caleb",
                      family = "Lucas",
                      role = c("aut", "cre"),
                      email = "calebjlucas@gmail.com",
                      comment = "https://caleblucas.com/"),
               person(given = "Joshua",
                      family = "McCrain",
                      role = "aut",
                      comment = "http://joshuamccrain.com/"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
resample_csquares 7.156  0.101   8.574
Maintainer: ‘Deniz Yenigun <deniz.yenigun@bilgi.edu.tr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Deniz",
                      family = "Yenigun",
                      role = c("aut", "cre"),
                      email = "deniz.yenigun@bilgi.edu.tr"),
               person(given = "Gunes",
                      family = "Ertan",
                      role = "aut"),
               person(given = "Michael",
                      family = "Siciliano",
                      role = "aut"))
as necessary.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘atm.Rd’:
    http://dx.doi.org/10.1016/j.socnet.2012.06.004
  File ‘cssTools-package.Rd’:
    http://dx.doi.org/10.1016/0378-8733(87)90009-8
  File ‘highTechManagers.Rd’:
    http://dx.doi.org/10.1016/0378-8733(87)90009-8
  File ‘s14.Rd’:
    http://dx.doi.org/10.1007/BF01896809
  File ‘sliceQuality.Rd’:
    http://dx.doi.org/10.1016/0378-8733(87)90009-8
    http://dx.doi.org/10.1016/j.socnet.2012.06.004
Maintainer: ‘Jonas M. B. Haslbeck <jonas.haslbeck@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Jonas", "M.", "B."),
                      family = "Haslbeck",
                      role = c("aut", "cre"),
                      email = "jonas.haslbeck@gmail.com"),
               person(given = c("Dirk", "U."),
                      family = "Wulff",
                      role = "aut"))
as necessary.
Maintainer: ‘Tim Bergsma <bergsmat@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Tim",
                    family = "Bergsma",
                    role = c("aut", "cre"),
                    email = "bergsmat@gmail.com")
as necessary.
Maintainer: ‘Robin Gower <csvwr@infonomics.ltd.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Robin",
                    family = "Gower",
                    role = c("aut", "cre"),
                    email = "csvwr@infonomics.ltd.uk")
as necessary.
Maintainer: ‘Thomas J. Leeper <thosjleeper@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
ci.table 5.308  0.123   5.741
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Francois Ritter <ritter.francois@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Clark Fitzgerald <fitzgerald@csus.edu>’

The BugReports field in DESCRIPTION has
  https://github.com/julianofhernandez/ctf
which should likely be
  https://github.com/julianofhernandez/ctf/issues
instead.
Maintainer: ‘Ningning Xu <ningningxu312@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Ningning",
                    family = "Xu",
                    role = c("aut", "cre"),
                    email = "ningningxu312@gmail.com")
as necessary.
Maintainer: ‘Danny Arends <Danny.Arends@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Danny",
                      family = "Arends",
                      role = c("aut", "cre"),
                      email = "Danny.Arends@gmail.com"),
               person(given = "Yang",
                      family = "Li",
                      role = "aut"),
               person(given = c("Gudrun", "A"),
                      family = "Brockmann",
                      role = "aut"),
               person(given = c("Ritsert", "C"),
                      family = "Jansen",
                      role = "aut"),
               person(given = c("Robert", "W"),
                      family = "Williams",
                      role = "aut"),
               person(given = "Pjotr",
                      family = "Prins",
                      role = "aut"))
as necessary.
Maintainer: ‘Cheng Ju <jucheng1992@gmail.com>’

The Description field contains
  algorithm (Ju et al. (2017) <arXiv:1706.10029>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  akde.Rd: res
  as.telemetry.Rd: fread
  ctmm-FAQ.Rd: zoom
  projection.Rd: CRS
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jim Liu <jimliu741523@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jim",
                      family = "Liu",
                      role = c("aut", "cre"),
                      email = "jimliu741523@gmail.com"),
               person(given = "Quan",
                      family = "Gu",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ctpm.fit.Rd: slouch, plot.variogram
  variogram.Rd: plot.variogram
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Paolo Frumento <paolo.frumento@unipi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Paolo",
                    family = "Frumento",
                    role = c("aut", "cre"),
                    email = "paolo.frumento@unipi.it")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ctqr-package.Rd: pchreg
  ctqr.Rd: Surv, pchreg
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ctFit.Rd: ctModel
  ctModelFromFit.Rd: ctModel
  ctMultigroupFit.Rd: ctLongToWide, ctModel
  ctPostPredict.Rd: ctPlotArray
  ctRefineTo.Rd: ctModel
  ctsemOMX.Rd: ctModel
  summary.ctsemFit.Rd: ctModel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
ctModelFromFit 4.066  0.067   5.019
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Kartikeya",
                    family = "Bolar",
                    role = c("aut", "cre"),
                    email = "kartikeya.bolar@tapmi.edu.in")
as necessary.
Maintainer: ‘John T. Willse <jtwillse@uncg.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "T."),
                    family = "Willse",
                    role = c("aut", "cre"),
                    email = "jtwillse@uncg.edu")
as necessary.
Maintainer: ‘John T. Willse <willse@uncg.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("John", "T."),
                    family = "Willse",
                    role = c("aut", "cre"),
                    email = "willse@uncg.edu")
as necessary.
Found the following files/directories:
  ‘Hello.csv’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘connection-config.R’ ‘read-float.R’ ‘read-hex.R’
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘apply_by_blocks.R’ ‘balance_by_blocks.Rd’ ‘balance_matrix.R’
    ‘balance_matrix.Rd’ ‘make_non_negative.Rd’ ‘round_by_blocks.Rd’
    ‘round_matrix.R’ ‘round_matrix.Rd’ ‘round_vector.Rd’
File ‘cubature/libs/cubature.so’:
  Found ‘exit’, possibly from ‘exit’ (C)
    Objects: ‘Cuba/libcuba.a’, ‘cubature-1.0.4/libcubature.a’
  Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
    Object: ‘Cuba/libcuba.a’
  Found ‘sprintf’, possibly from ‘sprintf’ (C)
    Object: ‘Cuba/libcuba.a’
  Found ‘stderr’, possibly from ‘stderr’ (C)
    Object: ‘cubature-1.0.4/libcubature.a’
  Found ‘stdout’, possibly from ‘stdout’ (C)
    Object: ‘Cuba/libcuba.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘accessors.Rd’ ‘as-cubble.R’ ‘as_cubble.Rd’ ‘check-key.R’
    ‘climate-data.Rd’ ‘covid.Rd’ ‘cubble-attrs.R’ ‘cubble-class.R’
    ‘cubble-print.R’ ‘dplyr.R’ ‘dplyr.Rd’ ‘face-spatial-temporal.R’
    ‘face.Rd’ ‘glyph.R’ ‘glyph.Rd’ ‘make_spatial_sf.Rd’
    ‘make_temporal_tsibble.Rd’ ‘matching.R’ ‘matching.Rd’ ‘netcdf.R’
    ‘sf.R’ ‘test-data.Rd’ ‘tsibble.R’ ‘tsibble.Rd’ ‘unfold.R’ ‘unfold.Rd’
Maintainer: ‘Wei-Chen Chen <wccsnow@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Alec Stephenson <alec_stephenson@hotmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Alec",
                      family = "Stephenson.",
                      role = "aut"),
               person(given = "Alec",
                      family = "Stephenson",
                      role = "cre",
                      email = "alec_stephenson@hotmail.com"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

The Description field contains
  solvers. See Rokicki, T. (2008) <arXiv:0803.3435> for the Kociemba
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Charles-Édouard Giguère <ce.giguere@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Charles-Édouard",
                    family = "Giguère",
                    role = c("aut", "cre"),
                    email = "ce.giguere@gmail.com")
as necessary.
Maintainer: ‘Kevin Stadler <a00425926@unet.univie.ac.at>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘mantel.test.Rd’:
    https://doi.org/10.1093/sysbio/32.1.21
    https://doi.org/10.1086/341527
Maintainer: ‘Shuo Li <skyli@bu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shuo",
                      family = "Li",
                      role = c("aut", "cre"),
                      email = "skyli@bu.edu"),
               person(given = "Xuan",
                      family = "Liu",
                      role = "aut",
                      email = "liuxuan@bu.edu"),
               person(given = "Qiong",
                      family = "Yang",
                      role = "aut",
                      email = "qyang@bu.edu"))
as necessary.
Maintainer: ‘Vito M.R. Muggeo <vito.muggeo@unipa.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Vito", "M.R."),
                    family = "Muggeo",
                    role = c("aut", "cre"),
                    email = "vito.muggeo@unipa.it")
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  jumpoints.Rd: lars
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Arturo Erdely <arturo.erdely@comunidad.unam.mx>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arturo",
                      family = "Erdely",
                      role = c("aut", "cre"),
                      email = "arturo.erdely@comunidad.unam.mx"),
               person(given = "Ian",
                      family = "Castillo",
                      role = "aut"))
as necessary.

File 'R/cumstats-internal.R' sets .Random.seed.
This is usually neither needed nor wanted.
Maintainer: ‘Jue (Marquis) Hou <hou00123@umn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Jue",
                      family = "Hou",
                      role = "aut",
                      comment = "Marquis"),
               person(given = "Evan",
                      family = "Ren",
                      role = "aut"),
               person(given = "Jue",
                      family = "Hou",
                      role = "cre",
                      email = "hou00123@umn.edu",
                      comment = "Marquis"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Survcure.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘create_cure_dataframe.R’ ‘cure_plot.R’ ‘resample_residuals.R’
Maintainer: ‘Eva Koritakova <koritakova@iba.muni.cz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Eva",
                      family = "Koritakova",
                      role = c("aut", "cre"),
                      email = "koritakova@iba.muni.cz",
                      comment = c(ROR = "Janousova")),
               person(given = "Tomas",
                      family = "Pavlik",
                      role = "aut"),
               person(given = "Jiri",
                      family = "Mayer",
                      role = "aut"),
               person(given = "Ladislav",
                      family = "Dusek",
                      role = "aut"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘plot_curriculum_graph.R’
Maintainer: ‘Thomas Lin Pedersen <thomasp85@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Thomas", "Lin"),
                    family = "Pedersen",
                    role = c("aut", "cre"),
                    email = "thomasp85@gmail.com")
as necessary.
Maintainer: ‘Chris Mann <cmann3@unl.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Chris",
                    family = "Mann",
                    role = c("aut", "cre"),
                    email = "cmann3@unl.edu")
as necessary.
Maintainer: ‘Christopher Murphy <cmurphy0313@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Kimihiro",
                      family = "Noguchi",
                      role = "aut",
                      email = "kimihiro.noguchi@wwu.edu"),
               person(given = "Christopher",
                      family = "Murphy",
                      role = "cre",
                      email = "cmurphy0313@gmail.com"))
as necessary.
Found the following files/directories:
  ‘Adjusted_p_values.pdf’ ‘Effect_Size_Curves.pdf’
  ‘Mean_Difference_Curves.pdf’
Maintainer: ‘Pavlo Mozharovskyi <pavlo.mozharovskyi@telecom-paristech.fr>’

The Description field contains
  (2019) <arXiv:1901.00180>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Specified C++11: please drop specification unless essential
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
plot.curvHDRfilter 4.315   0.33   5.516
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
curve    4.331  0.205   5.031
invcurve 4.428  0.101   5.248
curveopt 4.245  0.067   5.131
Maintainer: ‘Koen W. De Bock <kdebock@audencia.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Koen", "W."),
                    family = "De Bock",
                    role = c("aut", "cre"),
                    email = "kdebock@audencia.com")
as necessary.
Maintainer: ‘Paul Kabaila <p.kabaila@latrobe.edu.au>’

The Description field contains
  Kabaila (2022) <arXiv:2211.04729>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Iago Montero Nunez <iagomontero95@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Iago", "Montero"),
                      family = "Nuñez",
                      role = "aut"),
               person(given = c("Iago", "Montero"),
                      family = "Nunez",
                      role = "cre",
                      email = "iagomontero95@gmail.com"))
as necessary.
Maintainer: ‘Boxiang Wang <boxiang-wang@uiowa.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Douglas", "M."),
                      family = "Hawkins",
                      role = "aut"),
               person(given = c("David", "H."),
                      family = "Olwell",
                      role = "aut"),
               person(given = "Boxiang",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "boxiang-wang@uiowa.edu"))
as necessary.
Specified C++11: please drop specification unless essential
Maintainer: ‘Yimin Chen <chenyimin0226@126.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Yimin",
                      family = "Chen",
                      role = c("aut", "cre"),
                      email = "chenyimin0226@126.com"),
               person(given = "Zhang",
                      family = "Jinxin",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
plot_epx 4.35    0.1    5.38
Maintainer: ‘Erin LeDell <oss@ledell.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Erin",
                      family = "LeDell",
                      role = c("aut", "cre"),
                      email = "oss@ledell.org"),
               person(given = "Maya",
                      family = "Petersen",
                      role = "aut"),
               person(given = "Mark",
                      family = "van der Laan",
                      role = "aut"))
as necessary.
Maintainer: ‘Jose Gama <rxprtgama@gmail.com>’

Found the following URLs which should use \doi (with the DOI name only):
  File ‘scoreRoth28Graphic.Rd’:
    http://dx.doi.org/10.1016/S0042-6989(97)00433-1
Maintainer: ‘Ben Marwick <benmarwick@gmail.com>’

Found the following (possibly) invalid file URIs:
  URI: www.jstor.org/stable/90707
    From: inst/doc/how_to_test_CVs.html
  URI: CONDUCT.md
    From: README.md
Maintainer: ‘Romain Azais <romain.azais@inria.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Romain",
                      family = "Azais",
                      role = c("aut", "cre"),
                      email = "romain.azais@inria.fr"),
               person(given = "Sandie",
                      family = "Ferrigno",
                      role = "aut"),
               person(given = "Marie-Jose",
                      family = "Martinez",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
Pigs      6.649  0.039   8.296
cv.merMod 6.213  0.023   7.308
Maintainer: ‘Chongliang Luo <chongliang.luo@uconn.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chongliang",
                      family = "Luo",
                      role = c("aut", "cre"),
                      email = "chongliang.luo@uconn.edu"),
               person(given = "Kun",
                      family = "Chen.",
                      role = "aut"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  SparseCCA.Rd: CCA, CCA.permute
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Tammo Krueger <tammokrueger@googlemail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Tammo",
                      family = "Krueger",
                      role = c("aut", "cre"),
                      email = "tammokrueger@googlemail.com"),
               person(given = "Mikio",
                      family = "Braun",
                      role = "aut"))
as necessary.
Maintainer: ‘Donghoh Kim <donghoh.kim@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Donghoh",
                      family = "Kim",
                      role = c("aut", "cre"),
                      email = "donghoh.kim@gmail.com"),
               person(given = "Hee-Seok",
                      family = "Oh",
                      role = "aut",
                      email = "heeseok@stats.snu.ac.kr"))
as necessary.
Maintainer: ‘Jiqiang Guo <guojq28@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Jiqiang",
                    family = "Guo",
                    role = c("aut", "cre"),
                    email = "guojq28@gmail.com")
as necessary.
Maintainer: ‘Gabor Csardi <csardi.gabor@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gabor",
                    family = "Csardi",
                    role = c("aut", "cre"),
                    email = "csardi.gabor@gmail.com")
as necessary.
Maintainer: ‘Peter Biber <castor.fiber@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Peter",
                    family = "Biber",
                    role = c("aut", "cre"),
                    email = "castor.fiber@gmx.de")
as necessary.
Problems with news in ‘NEWS.md’:
No news entries found.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  simulate_cycloSurv.Rd: Surv
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Cramer_vonMises.Rd: Copula-class
  Cylcop.Rd: Copula-class
  ccylcop.Rd: Copula-class
  cyl_copula-class.Rd: Copula-class
  cyl_rect_combine-class.Rd: Copula-class
  cyl_rect_combine.Rd: Copula-class
  cyl_rot_combine-class.Rd: Copula-class
  cyl_rot_combine.Rd: Copula-class
  fit_cylcop_ml.Rd: Copula-class, fitCopula
  full2half_circ.Rd: circular
  half2full_circ.Rd: circular
  joint.Rd: Copula-class
  numerical_conditional_cop.Rd: Copula-class
  numerical_inv_conditional_cop.Rd: Copula-class
  plot_cop_surf.Rd: Copula-class
  wasserstein.Rd: Copula-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) fit.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit.Rd:39: Lost braces in \itemize; meant \describe ?
Maintainer: ‘Boris P Hejblum <boris.hejblum@u-bordeaux.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Chariff",
                      family = "Alkhassim",
                      role = "aut"),
               person(given = c("Boris", "P"),
                      family = "Hejblum",
                      role = c("aut", "cre"),
                      email = "boris.hejblum@u-bordeaux.fr"),
               person(given = "Anthony",
                      family = "Devaux",
                      role = "aut"),
               person(given = c("Van", "Hung", "Huynh"),
                      family = "Tran",
                      role = "aut"))
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
checkRd: (-1) CytofTree.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytofTree.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytomeTree.Rd:33-34: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytomeTree.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytomeTree.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) CytomeTree.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RetrievePops.Rd:20-21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RetrievePops.Rd:22-23: Lost braces in \itemize; \value handles \item{}{} directly
Maintainer: ‘Miguel Ferreiro-Díaz <miguel.ferreiro.diaz@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  ConfMatrix.Rd: R6
  D2MCS.Rd: getModelInfo
  GainRatioHeuristic.Rd: gain.ratio
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Christopher Gandrud <christopher.gandrud@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Christopher",
                    family = "Gandrud",
                    role = c("aut", "cre"),
                    email = "christopher.gandrud@gmail.com")
as necessary.
Maintainer: ‘Mauricio Vargas <oec@media.mit.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Mauricio",
                      family = "Vargas",
                      role = c("aut", "cre"),
                      email = "oec@media.mit.edu"),
               person(given = "Joshua",
                      family = "Kunst",
                      role = "aut"),
               person(given = "Dave",
                      family = "Landry",
                      role = "ctb"),
               person(family = "Datawheel",
                      role = "cph"))
as necessary.
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘d3TreeFunctions.R’
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  StoragehubManager.Rd: R6Class
  d4storagehub4RLogger.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘John Maindonald <jhmaindonald@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "John",
                    family = "Maindonald",
                    role = c("aut", "cre"),
                    email = "jhmaindonald@gmail.com")
as necessary.
Maintainer: ‘W. John Braun <john.braun@ubc.ca>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("John", "H"),
                      family = "Maindonald",
                      role = "aut",
                      email = "john@statsresearch.co.nz"),
               person(given = c("W.", "John"),
                      family = "Braun",
                      role = c("aut", "cre"),
                      email = "john.braun@ubc.ca"))
as necessary.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DAAGtheme.Rd: theEconomist.theme, standard.theme, simpleTheme,
    custom.theme
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) fpiter.Rd:55-58: Lost braces
    55 |     \code{tol}{  A small, positive scalar that determines when iterations
       |               ^
checkRd: (-1) fpiter.Rd:60-61: Lost braces
    60 |     \code{maxiter}{  An integer denoting the maximum limit on the number of
       |                   ^
checkRd: (-1) fpiter.Rd:63-65: Lost braces
    63 |     \code{trace}{  A logical variable denoting whether some of the intermediate
       |                 ^
Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘clean_land_points.R’ ‘join_mpa_data.R’ ‘join_mpa_data.Rd’
    ‘join_ports_locations.R’ ‘model_vms.R’ ‘vms_clean.R’
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
clean_land_points 3.454  0.174   5.563
Maintainer: ‘James Curran <j.curran@auckland.ac.nz>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Curran",
                      role = c("aut", "cre"),
                      email = "j.curran@auckland.ac.nz"),
               person(given = "Danny",
                      family = "Chang",
                      role = "aut"))
as necessary.
checkRd: (-1) formatScientificTeX.Rd:33: Lost braces; missing escapes or markup?
    33 | function will return  " 3.0\\\\times 10^{2}"
       |                                         ^
Maintainer: ‘Johannes Textor <johannes.textor@gmx.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Johannes",
                      family = "Textor",
                      role = c("aut", "cre"),
                      email = "johannes.textor@gmx.de"),
               person(given = "Benito",
                      family = "van der Zander",
                      role = "aut"),
               person(given = "Ankur",
                      family = "Ankan",
                      role = "aut"))
as necessary.
Maintainer: ‘Lutz P Breitling <l.breitling@posteo.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Lutz", "P"),
                    family = "Breitling",
                    role = c("aut", "cre"),
                    email = "l.breitling@posteo.de")
as necessary.
Maintainer: ‘Niklas Hohmann <Niklas.Hohmann@fau.de>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Niklas",
                    family = "Hohmann",
                    role = c("aut", "cre"),
                    email = "niklas.hohmann@fau.de")
as necessary.
Maintainer: ‘Ali Uenlue <ali.uenlue@tum.de>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
Maintainer: ‘Przemyslaw Biecek <przemyslaw.biecek@gmail.com>’

The Description field contains
  in (Biecek 2018) <arXiv:1806.08915>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  plot.predict_parts.Rd: break_down, local_attributions,
    local_interactions
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Szymon Maksymiuk <sz.maksymiuk@gmail.com>’

The Description field contains
  'DALEXtra' creates 'DALEX' Biecek (2018) <arXiv:1806.08915> explainer
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Examples with CPU (user + system) or elapsed time > 5s
                              user system elapsed
explain_xgboost              4.902  0.334   4.770
plot.trainig_test_comparison 3.983  0.375   6.778
trainig_test_comparison      3.932  0.395   5.790
Author field differs from that derived from Authors@R
  Author:    ‘Eduardo Ogasawara [aut, ths, cre] (<https://orcid.org/0000-0002-0466-0626>), Diego Salles [aut, ths], Federal Center for Technological Education of Rio de Janeiro (CEFET/RJ) [cph] (CEFET/RJ)’
  Authors@R: ‘Eduardo Ogasawara [aut, ths, cre] (ORCID: <https://orcid.org/0000-0002-0466-0626>), Diego Salles [aut, ths], Federal Center for Technological Education of Rio de Janeiro (CEFET/RJ) [cph] (organization: CEFET/RJ)’
Maintainer: ‘Brecht Devleesschauwer <brechtdv@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following URLs which should use \doi (with the DOI name only):
  File ‘DALY-package.Rd’:
    http://dx.doi.org/10.1007/s00038-014-0552-z
  File ‘DALYcalculator.Rd’:
    http://dx.doi.org/10.1007/s00038-014-0552-z
  File ‘setStdLE.Rd’:
    http://dx.doi.org/10.1007/s00038-014-0552-z
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
detect_damage 4.878  0.074   6.195
Maintainer: ‘Damian Siniakowicz <DamianSiniakowicz@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Damian",
                    family = "Siniakowicz",
                    role = c("aut", "cre"),
                    email = "damiansiniakowicz@gmail.com")
as necessary.
Maintainer: ‘Rampal S. Etienne <r.s.etienne@rug.nl>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Rampal", "S.", "Etienne", "&", "Alex", "L."),
                      family = "Pigot",
                      role = "aut"),
               person(given = c("Rampal", "S."),
                      family = "Etienne",
                      role = "cre",
                      email = "r.s.etienne@rug.nl"))
as necessary.
Maintainer: ‘David Garibay <dgari039@uottawa.ca>’

Found the following \keyword or \concept entries
which likely give several index terms:
  File ‘beta_params.Rd’:
    \keyword{distribution;}
  File ‘calc_evpi.Rd’:
    \keyword{information;}
  File ‘dirichlet_params.Rd’:
    \keyword{distribution;}
  File ‘gamma_params.Rd’:
    \keyword{distribution;}
  File ‘lnorm_params.Rd’:
    \keyword{distribution;}
Maintainer: ‘Dirk Eddelbuettel <edd@debian.org>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Dirk", "Eddelbuettel", "with", "contributions", "by", "Brodie"),
                      family = "Gaslam",
                      role = "aut"),
               person(given = "Kevin",
                      family = "Denny",
                      role = "aut"),
               person(given = "Kabira",
                      family = "Namit",
                      role = "aut"),
               person(given = "Colin",
                      family = "Gillespie",
                      role = "aut"),
               person(given = "R",
                      family = "Core",
                      role = "aut"),
               person(given = "Josh",
                      family = "Ulrich",
                      role = "aut"),
               person(given = c("Jordan", "Mark"),
                      family = "Barbone",
                      role = "aut"),
               person(given = "Bill",
                      family = "Dunlap",
                      role = "aut"),
               person(family = "others.",
                      role = "aut"),
               person(given = "Dirk",
                      family = "Eddelbuettel",
                      role = "cre",
                      email = "edd@debian.org"))
as necessary.
Maintainer: ‘Matteo Quartagno <m.quartagno@ucl.ac.uk>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Matteo",
                    family = "Quartagno",
                    role = c("aut", "cre"),
                    email = "m.quartagno@ucl.ac.uk")
as necessary.

The Description field contains
  et al. (2019) <arXiv:1905.00241>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Valeri Voev <v_voev@yahoo.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Valeri",
                    family = "Voev",
                    role = c("aut", "cre"),
                    email = "v_voev@yahoo.com")
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
dapper_sample 1.89  0.176   5.884
Maintainer: ‘Dorota Desaulle <dorota.desaulle@u-paris.fr>’

The Description field contains
  <arXiv:2103.09872>).
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Maintainer: ‘Carlos P. Carmona <perezcarmonacarlos@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Carlos", "P."),
                      family = "Carmona",
                      role = c("aut", "cre"),
                      email = "perezcarmonacarlos@gmail.com"),
               person(given = "Meelis",
                      family = "Partel",
                      role = "aut"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
gl.pcoa 6.041  0.073   7.935
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
gl.infer.sex 3.578  0.306   5.075
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gl.diagnostics.sim.Rd: gl.filter.callrate
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  gl.spatial.autoCorr.Rd: gl.propShared, gl.dist.ind
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Martijn Schuemie <schuemie@ohdsi.org>’

Found the following (possibly) invalid file URI:
  URI: ../../issues
    From: README.md
Examples with CPU time > 2.5 times elapsed time
        user system elapsed  ratio
Pswarm 3.271  1.187   0.422 10.564
Maintainer: ‘Xiaorui(Jeremy) Zhu <zhuxiaorui1989@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Xiaorui",
                      family = "Zhu",
                      role = "aut",
                      comment = "Jeremy"),
               person(given = "Xiaorui",
                      family = "Zhu",
                      role = "cre",
                      email = "zhuxiaorui1989@gmail.com",
                      comment = "Jeremy"))
as necessary.
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
getSfilesPath 0.947  7.888  15.426
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  dcr_app.Rd: plotly
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
checkRd: (-1) processFlow.Rd:14: Lost braces
    14 | \item{roundDigits}{Integer. If NA, numerics are not rounded before comparison. If /code{roundDigits} is specified, numerics are 
       |                                                                                        ^
checkRd: (-1) processFlow.Rd:15: Lost braces
    15 | rounded to /code{roundDigits} decimal places using \link[base]{round}.}
       |                 ^
checkRd: (-1) data_edit.Rd:137: Lost braces
   137 | code{data_edit} is a shiny application built on \code{rhandsontable} that is
       |     ^
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  configure_report.Rd: theme
  create_report.Rd: render
  drop_columns.Rd: data.table
  group_category.Rd: data.table
  plotDataExplorer.Rd: theme
  plotDataExplorer.grid.Rd: theme
  plotDataExplorer.multiple.Rd: theme, facet_wrap
  plotDataExplorer.single.Rd: theme
  plot_bar.Rd: geom_bar, theme_gray, theme
  plot_boxplot.Rd: geom_boxplot, geom_jitter, scale_y_continuous,
    theme_gray, theme
  plot_correlation.Rd: geom_text, theme_gray, theme
  plot_density.Rd: geom_density, scale_x_continuous, theme_gray, theme
  plot_histogram.Rd: geom_histogram, scale_x_continuous, theme_gray,
    theme
  plot_intro.Rd: geom_label, theme_gray, theme
  plot_missing.Rd: geom_label, theme_gray, theme
  plot_prcomp.Rd: geom_label, theme_gray, theme
  plot_qq.Rd: geom_qq, geom_qq_line, theme_gray, theme
  plot_scatterplot.Rd: geom_point, geom_jitter, scale_x_continuous,
    scale_y_continuous, theme_gray, theme
  plot_str.Rd: diagonalNetwork, radialNetwork
  set_missing.Rd: data.table
  split_columns.Rd: data.table
  update_columns.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Maintainer: ‘Jonathan M. Gilligan <jonathan.gilligan@vanderbilt.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.
File ‘DataGraph/libs/DataGraph.so’:
  Found non-API call to R: ‘Rf_isFrame’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.