Running ‘testthat.R’ [325s/334s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(abn)
  abn version 3.1.1 (2024-05-22) is loaded.
  To cite the package 'abn' in publications call: citation('abn').
  
  Attaching package: 'abn'
  
  The following object is masked from 'package:base':
  
      factorial
  
  > 
  > require(RhpcBLASctl)
  Loading required package: RhpcBLASctl
  > omp_set_num_threads(2)
  > 
  > test_check("abn")
  Loading required package: Matrix
  Running in single core mode. 'cluster.type' is ignored.
  Running in single core mode. 'cluster.type' is ignored.
  Running in single core mode. 'cluster.type' is ignored.
  Running in single core mode. 'cluster.type' is ignored.
  [ FAIL 7 | WARN 0 | SKIP 56 | PASS 438 ]
  
  ══ Skipped tests (56) ══════════════════════════════════════════════════════════
  • BuildScoreCache(method=mle) crashes with Poisson nodes (1):
    'test-fitabn_mle.R:138:3'
  • INLA is not tested on CRAN (1): 'test-search_hillclimber.R:79:7'
  • On CRAN (53): 'test-Coutput.R:1:1', 'test-abn-methods.R:29:3',
    'test-abn-methods.R:55:3', 'test-abn-methods.R:76:3',
    'test-abn-methods.R:102:3', 'test-abn-methods.R:125:3',
    'test-abn-methods.R:154:3', 'test-abn-methods.R:177:3',
    'test-abn-methods.R:200:3', 'test-abn-methods.R:228:3',
    'test-abn-methods.R:253:3', 'test-abn-methods.R:278:3',
    'test-abn-methods.R:303:3', 'test-abn-methods.R:328:3',
    'test-abn-methods.R:353:3', 'test-abn-methods.R:378:3',
    'test-abn-methods.R:403:3', 'test-abn-methods.R:428:3',
    'test-build_score_cache.R:122:3', 'test-build_score_cache.R:181:3',
    'test-build_score_cache.R:331:3', 'test-build_score_cache.R:386:3',
    'test-build_score_cache.R:434:3', 'test-build_score_cache_bayes.R:2:3',
    'test-build_score_cache_bayes.R:33:3', 'test-build_score_cache_bayes.R:91:3',
    'test-build_score_cache_bayes.R:127:3', 'test-calc_node_inla_glm.R:2:3',
    'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3',
    'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3',
    'test-fitabn.R:190:3', 'test-fitabn.R:379:3', 'test-fitabn_bayes.R:2:3',
    'test-fitabn_mle.R:562:11', 'test-fitabn_mle.R:674:11',
    'test-mostprobable.R:2:3', 'test-mostprobable.R:12:3',
    'test-mostprobable.R:79:3', 'test-mostprobable.R:169:3',
    'test-mostprobable.R:211:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3',
    'test-search_heuristic.R:2:3', 'test-search_hillclimber.R:16:3',
    'test-search_hillclimber.R:84:3', 'test-simulateabn.R:508:3',
    'test-simulateabn.R:810:3', 'test-tographviz.R:27:3',
    'test-tographviz.R:171:3'
  • Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ──
  Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors.
  i Actually got a <packageNotFoundError> with text:
    there is no package called 'INLA'
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
   4. │ └─base::withCallingHandlers(...)
   5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7
  ── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ──
  Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors.
  i Actually got a <packageNotFoundError> with text:
    there is no package called 'INLA'
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
   4. │ └─base::withCallingHandlers(...)
   5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7
  ── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ──
  Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors.
  i Actually got a <packageNotFoundError> with text:
    there is no package called 'INLA'
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
   4. │ └─base::withCallingHandlers(...)
   5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7
  ── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ──
  Expected `buildScoreCache(...)` to run without any errors.
  i Actually got a <packageNotFoundError> with text:
    there is no package called 'INLA'
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
   4. │ └─base::withCallingHandlers(...)
   5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7
  ── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ──
  Expected `buildScoreCache(...)` to run without any errors.
  i Actually got a <packageNotFoundError> with text:
    there is no package called 'INLA'
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
   4. │ └─base::withCallingHandlers(...)
   5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7
  ── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ──
  Expected `buildScoreCache(...)` to run without any errors.
  i Actually got a <packageNotFoundError> with text:
    there is no package called 'INLA'
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
   4. │ └─base::withCallingHandlers(...)
   5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7
  ── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ──
  <packageNotFoundError/error/condition>
  Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
  Backtrace:
       ▆
    1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
    2. │ └─base::withCallingHandlers(...)
    3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
    4. │ └─base::withCallingHandlers(...)
    5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7
    6. │ └─testthat:::expect_condition_matching(...)
    7. │   └─testthat:::quasi_capture(...)
    8. │     ├─testthat (local) .capture(...)
    9. │     │ └─base::withCallingHandlers(...)
   10. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   11. └─abn::buildScoreCache(...)
   12.   └─abn::buildScoreCache.bayes(...)
   13.     └─... %do% ...
   14.       └─e$fun(obj, substitute(ex), parent.frame(), e$data)
   15.         └─base::library(p, character.only = TRUE)
  
  [ FAIL 7 | WARN 0 | SKIP 56 | PASS 438 ]
  Deleting unused snapshots:
  • tographviz/graph.dot
  • tographviz/graph1.dot
  • tographviz/graph_group.dot
  Error: Test failures
  Execution halted