Error(s) in re-building vignettes:
--- re-building ‘HE_manova.Rmd’ using rmarkdown
Warning: Duplicated chunk option(s) 'echo' in both chunk header and pipe comments of the chunk 'plastic1a'.
** Processing: fig/manova-addhealth-means-each-1.png
672x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13982 bytes
Input file size = 14852 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12433
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12290
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12290

Output IDAT size = 12290 bytes (1692 bytes decrease)
Output file size = 12368 bytes (2484 bytes = 16.73% decrease)

** Processing: fig/manova-addhealth-means-plot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21635 bytes
Input file size = 21737 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17943
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17943

Output IDAT size = 17943 bytes (3692 bytes decrease)
Output file size = 18021 bytes (3716 bytes = 17.10% decrease)

** Processing: fig/manova-addhealth-covellipse-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 57924 bytes
Input file size = 58086 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47122
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47122

Output IDAT size = 47122 bytes (10802 bytes decrease)
Output file size = 47200 bytes (10886 bytes = 18.74% decrease)

** Processing: fig/manova-addhealth-heplot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28929 bytes
Input file size = 29043 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22734
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22734

Output IDAT size = 22734 bytes (6195 bytes decrease)
Output file size = 22812 bytes (6231 bytes = 21.45% decrease)

** Processing: fig/manova-plastic1a-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38424 bytes
Input file size = 38550 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29739
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29739

Output IDAT size = 29739 bytes (8685 bytes decrease)
Output file size = 29817 bytes (8733 bytes = 22.65% decrease)

** Processing: fig/manova-plastic1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44213 bytes
Input file size = 44351 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 34362
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 34362

Output IDAT size = 34362 bytes (9851 bytes decrease)
Output file size = 34440 bytes (9911 bytes = 22.35% decrease)

** Processing: fig/manova-plastic2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58245 bytes
Input file size = 58407 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46641
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46641

Output IDAT size = 46641 bytes (11604 bytes decrease)
Output file size = 46719 bytes (11688 bytes = 20.01% decrease)

** Processing: fig/manova-jury-mod1-HE-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30237 bytes
Input file size = 30351 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25378
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25378

Output IDAT size = 25378 bytes (4859 bytes decrease)
Output file size = 25456 bytes (4895 bytes = 16.13% decrease)

** Processing: fig/manova-jury-mod1-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 81381 bytes
Input file size = 81567 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61827
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61827

Output IDAT size = 61827 bytes (19554 bytes decrease)
Output file size = 61905 bytes (19662 bytes = 24.11% decrease)

** Processing: fig/manova-jury-can1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32641 bytes
Input file size = 32755 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26029
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26029

Output IDAT size = 26029 bytes (6612 bytes decrease)
Output file size = 26107 bytes (6648 bytes = 20.30% decrease)

** Processing: fig/manova-jury-mod2-HE-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34334 bytes
Input file size = 34460 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28873
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28873

Output IDAT size = 28873 bytes (5461 bytes decrease)
Output file size = 28951 bytes (5509 bytes = 15.99% decrease)

** Processing: fig/manova-jury-mod3-eff-1.png
864x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36223 bytes
Input file size = 36349 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28808
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28808

Output IDAT size = 28808 bytes (7415 bytes decrease)
Output file size = 28886 bytes (7463 bytes = 20.53% decrease)

** Processing: fig/manova-skulls4-1.png
672x672 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 33868 bytes
Input file size = 34774 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30348
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 30271
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 30271

Output IDAT size = 30271 bytes (3597 bytes decrease)
Output file size = 30349 bytes (4425 bytes = 12.73% decrease)

** Processing: fig/manova-skulls-bwplot-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48179 bytes
Input file size = 48317 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 36763
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 36763

Output IDAT size = 36763 bytes (11416 bytes decrease)
Output file size = 36841 bytes (11476 bytes = 23.75% decrease)

** Processing: fig/manova-skulls-HE-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 120283 bytes
Input file size = 120529 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 92751
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 92751

Output IDAT size = 92751 bytes (27532 bytes decrease)
Output file size = 92829 bytes (27700 bytes = 22.98% decrease)

--- finished re-building ‘HE_manova.Rmd’

--- re-building ‘HE_mmra.Rmd’ using rmarkdown
** Processing: fig/mmra-rohwer-long-ggplot-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 59900 bytes
Input file size = 60062 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46042
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46042

Output IDAT size = 46042 bytes (13858 bytes decrease)
Output file size = 46120 bytes (13942 bytes = 23.21% decrease)

** Processing: fig/mmra-rohwer-coefplot-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44811 bytes
Input file size = 44949 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 37591
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 37591

Output IDAT size = 37591 bytes (7220 bytes decrease)
Output file size = 37669 bytes (7280 bytes = 16.20% decrease)

** Processing: fig/mmra-rohwer-coefplot-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48822 bytes
Input file size = 48960 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39895
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39895

Output IDAT size = 39895 bytes (8927 bytes decrease)
Output file size = 39973 bytes (8987 bytes = 18.36% decrease)

** Processing: fig/mmra-rohwer-HE1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35734 bytes
Input file size = 35860 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28210
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28210

Output IDAT size = 28210 bytes (7524 bytes decrease)
Output file size = 28288 bytes (7572 bytes = 21.12% decrease)

** Processing: fig/mmra-rohwer-HE2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43610 bytes
Input file size = 43748 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33023
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33023

Output IDAT size = 33023 bytes (10587 bytes decrease)
Output file size = 33101 bytes (10647 bytes = 24.34% decrease)

** Processing: fig/mmra-rohwer-HE2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45928 bytes
Input file size = 46066 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35601
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35601

Output IDAT size = 35601 bytes (10327 bytes decrease)
Output file size = 35679 bytes (10387 bytes = 22.55% decrease)

** Processing: fig/mmra-rohwer-HE3-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 90912 bytes
Input file size = 91122 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66530
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66530

Output IDAT size = 66530 bytes (24382 bytes decrease)
Output file size = 66608 bytes (24514 bytes = 26.90% decrease)

** Processing: fig/mmra-rohwer-HE4-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41870 bytes
Input file size = 42008 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31400
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31400

Output IDAT size = 31400 bytes (10470 bytes decrease)
Output file size = 31478 bytes (10530 bytes = 25.07% decrease)

** Processing: fig/mmra-hern-pairs-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 128712 bytes
Input file size = 128970 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 97407
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 97407

Output IDAT size = 97407 bytes (31305 bytes decrease)
Output file size = 97485 bytes (31485 bytes = 24.41% decrease)

** Processing: fig/mmra-hern-can1-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15225 bytes
Input file size = 15315 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12561
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12561

Output IDAT size = 12561 bytes (2664 bytes decrease)
Output file size = 12639 bytes (2676 bytes = 17.47% decrease)

** Processing: fig/mmra-hern-can1-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16091 bytes
Input file size = 16181 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13066
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13066

Output IDAT size = 13066 bytes (3025 bytes decrease)
Output file size = 13144 bytes (3037 bytes = 18.77% decrease)

** Processing: fig/mmra-hern-can2-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18237 bytes
Input file size = 18339 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14923
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14923

Output IDAT size = 14923 bytes (3314 bytes decrease)
Output file size = 15001 bytes (3338 bytes = 18.20% decrease)

** Processing: fig/mmra-hern-can2-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15685 bytes
Input file size = 15775 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12866
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12866

Output IDAT size = 12866 bytes (2819 bytes decrease)
Output file size = 12944 bytes (2831 bytes = 17.95% decrease)

** Processing: fig/mmra-grades-pairs-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 112985 bytes
Input file size = 113219 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 91085
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 91085

Output IDAT size = 91085 bytes (21900 bytes decrease)
Output file size = 91163 bytes (22056 bytes = 19.48% decrease)

** Processing: fig/mmra-grades-can-class-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27911 bytes
Input file size = 28025 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21592
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21592

Output IDAT size = 21592 bytes (6319 bytes decrease)
Output file size = 21670 bytes (6355 bytes = 22.68% decrease)

** Processing: fig/mmra-grades-can-all-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16222 bytes
Input file size = 16312 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13297
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13297

Output IDAT size = 13297 bytes (2925 bytes decrease)
Output file size = 13375 bytes (2937 bytes = 18.01% decrease)

** Processing: fig/mmra-grades-can-all-2.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20802 bytes
Input file size = 20904 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16891
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16891

Output IDAT size = 16891 bytes (3911 bytes decrease)
Output file size = 16969 bytes (3935 bytes = 18.82% decrease)

--- finished re-building ‘HE_mmra.Rmd’

--- re-building ‘datasets.Rmd’ using rmarkdown

Quitting from datasets.Rmd:112-130 [datasets]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Please install the `litedown` package.
---
Backtrace:
     ▆
  1. └─tools:::.buildOneVignette(...)
  2.   ├─base::tryCatch(...)
  3.   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   └─engine$weave(file, quiet = quiet, encoding = enc)
  7.     └─knitr:::vweave_rmarkdown(...)
  8.       └─rmarkdown::render(...)
  9.         └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           └─knitr:::process_file(text, output)
 11.             ├─xfun:::handle_error(...)
 12.             ├─base::withCallingHandlers(...)
 13.             └─knitr:::process_group(group)
 14.               └─knitr:::call_block(x)
 15.                 └─knitr:::block_exec(params)
 16.                   └─knitr:::eng_r(options)
 17.                     ├─knitr:::in_input_dir(...)
 18.                     │ └─knitr:::in_dir(input_dir(), expr)
 19.                     └─knitr (local) evaluate(...)
 20.                       └─evaluate::evaluate(...)
 21.                         ├─base::withRestarts(...)
 22.                         │ └─base (local) withRestartList(expr, restarts)
 23.                         │   ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                         │   │ └─base (local) doWithOneRestart(return(expr), restart)
 25.                         │   └─base (local) withRestartList(expr, restarts[-nr])
 26.                         │     └─base (local) withOneRestart(expr, restarts[[1L]])
 27.                         │       └─base (local) doWithOneRestart(return(expr), restart)
 28.                         ├─evaluate:::with_handlers(...)
 29.                         │ ├─base::eval(call)
 30.                         │ │ └─base::eval(call)
 31.                         │ └─base::withCallingHandlers(...)
 32.                         └─watcher$print_value(ev$value, ev$visible, envir)
 33.                           ├─base::withVisible(handle_value(handler, value, visible, envir))
 34.                           └─evaluate:::handle_value(handler, value, visible, envir)
 35.                             └─handler$value(value, visible)
 36.                               └─knitr (local) fun(x, options = options)
 37.                                 ├─base::withVisible(knit_print(x, ...))
 38.                                 ├─knitr::knit_print(x, ...)
 39.                                 └─tinytable::knit_print.tinytable(x, ...)
 40.                                   └─tinytable:::build_tt(x, output = output)
 41.                                     ├─base::eval(l)
 42.                                     │ └─base::eval(l)
 43.                                     └─tinytable:::format_tt_lazy(...)
 44.                                       └─tinytable:::assert_dependency("litedown")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'datasets.Rmd' failed with diagnostics:
Please install the `litedown` package.
--- failed re-building ‘datasets.Rmd’

--- re-building ‘repeated-JSS.pdf.asis’ using asis
--- finished re-building ‘repeated-JSS.pdf.asis’

SUMMARY: processing the following file failed:
  ‘datasets.Rmd’

Error: Vignette re-building failed.
Execution halted