Found the following significant warnings:
  Rd warning: Parsimnet-class.Rd:29: missing link ‘network’
  Rd warning: Parsimnet-class.Rd:30: missing link ‘networx’
  Rd warning: as.DNAbin-methods.Rd:10: missing link ‘DNAbin’
  Rd warning: as.DNAbin-methods.Rd:23: missing link ‘DNAbin’
  Rd warning: as.dna-methods.Rd:32: missing link ‘DNAbin’
  Rd warning: as.dna-methods.Rd:32: missing link ‘phyDat’
  Rd warning: as.dna-methods.Rd:73: missing link ‘DNAbin’
  Rd warning: as.dna-methods.Rd:77: missing link ‘phyDat’
  Rd warning: as.network-methods.Rd:8: missing link ‘network’
  Rd warning: as.network-methods.Rd:19: missing link ‘network’
  Rd warning: as.network-methods.Rd:23: missing link ‘network’
  Rd warning: as.networx-methods.Rd:8: missing link ‘networx’
  Rd warning: as.networx-methods.Rd:18: missing link ‘as.splits’
  Rd warning: as.networx-methods.Rd:23: missing link ‘networx’
  Rd warning: as.phyDat-methods.Rd:11: missing link ‘phyDat’
  Rd warning: as.phyDat-methods.Rd:37: missing link ‘phyDat’
  Rd warning: parsimnet-methods.Rd:82: missing link ‘network’
  Rd warning: pielegend-methods.Rd:53: missing link ‘floating.pie’
  Rd warning: pielegend-methods.Rd:53: missing link ‘plot.network.default’
  Rd warning: pieplot-methods.Rd:21: missing link ‘network.layout’
  Rd warning: pieplot-methods.Rd:25: missing link ‘floating.pie’
  Rd warning: pieplot-methods.Rd:29: missing link ‘floating.pie’
  Rd warning: pieplot-methods.Rd:29: missing link ‘network.vertex’
  Rd warning: pieplot-methods.Rd:29: missing link ‘plot.network.default’
  Rd warning: pieplot-methods.Rd:69: missing link ‘plot.network.default’
  Rd warning: pieplot-methods.Rd:73: missing link ‘floating.pie’
  Rd warning: pieplot-methods.Rd:73: missing link ‘plot.network.default’
  Rd warning: plot-methods.Rd:21: missing link ‘plot.network.default’
  Rd warning: plot-methods.Rd:25: missing link ‘plot.network.default’
  Rd warning: plot-methods.Rd:54: missing link ‘plot.network.default’
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/haplotypes.Rcheck/00install.out’ for details.