Error(s) in re-building vignettes:
--- re-building ‘Import_data.Rmd’ using rmarkdown
--- finished re-building ‘Import_data.Rmd’

--- re-building ‘PLN.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLN_files/figure-html/geometricalInsight-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 73644 bytes
Input file size = 73818 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 55474
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 55474

Output IDAT size = 55474 bytes (18170 bytes decrease)
Output file size = 55552 bytes (18266 bytes = 24.74% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLN_files/figure-html/fitted-1.png
672x480 pixels, 8 bits/pixel, 253 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7493 bytes
Input file size = 8342 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5921
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5921

Output IDAT size = 5921 bytes (1572 bytes decrease)
Output file size = 5999 bytes (2343 bytes = 28.09% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLN_files/figure-html/plot covariance-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 95567 bytes
Input file size = 95777 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 79023
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 79023

Output IDAT size = 79023 bytes (16544 bytes decrease)
Output file size = 79101 bytes (16676 bytes = 17.41% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLN_files/figure-html/weighted-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10818 bytes
Input file size = 11688 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9157
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9157

Output IDAT size = 9157 bytes (1661 bytes decrease)
Output file size = 9235 bytes (2453 bytes = 20.99% decrease)

--- finished re-building ‘PLN.Rmd’

--- re-building ‘PLNLDA.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNLDA_files/figure-html/vcov-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 69845 bytes
Input file size = 70019 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 56181
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 56181

Output IDAT size = 56181 bytes (13664 bytes decrease)
Output file size = 56259 bytes (13760 bytes = 19.65% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNLDA_files/figure-html/plot_model-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 100473 bytes
Input file size = 100695 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 77122
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 77122

Output IDAT size = 77122 bytes (23351 bytes decrease)
Output file size = 77200 bytes (23495 bytes = 23.33% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNLDA_files/figure-html/predicted_scores-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 40834 bytes
Input file size = 40960 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33856
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33856

Output IDAT size = 33856 bytes (6978 bytes decrease)
Output file size = 33934 bytes (7026 bytes = 17.15% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNLDA_files/figure-html/plot_model_cov-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 99957 bytes
Input file size = 100179 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 77728
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 77728

Output IDAT size = 77728 bytes (22229 bytes decrease)
Output file size = 77806 bytes (22373 bytes = 22.33% decrease)

--- finished re-building ‘PLNLDA.Rmd’

--- re-building ‘PLNPCA.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNPCA_files/figure-html/plot nocov-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25197 bytes
Input file size = 25311 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20461
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20461

Output IDAT size = 20461 bytes (4736 bytes decrease)
Output file size = 20539 bytes (4772 bytes = 18.85% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNPCA_files/figure-html/plot nocov-reverse-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24189 bytes
Input file size = 24291 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20090
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20090

Output IDAT size = 20090 bytes (4099 bytes decrease)
Output file size = 20168 bytes (4123 bytes = 16.97% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNPCA_files/figure-html/map-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45370 bytes
Input file size = 45508 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40153
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40153

Output IDAT size = 40153 bytes (5217 bytes decrease)
Output file size = 40231 bytes (5277 bytes = 11.60% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNPCA_files/figure-html/sigma-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 76868 bytes
Input file size = 77054 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 63973
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 63973

Output IDAT size = 63973 bytes (12895 bytes decrease)
Output file size = 64051 bytes (13003 bytes = 16.88% decrease)


Quitting from lines 224-225 [fviz_biplot] (PLNPCA.Rmd)
Error: processing vignette 'PLNPCA.Rmd' failed with diagnostics:
The value of the argument axes is incorrect. The number of axes in the data is: 1. Please try again with axes between 1 - 1
--- failed re-building ‘PLNPCA.Rmd’

--- re-building ‘PLNmixture.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNmixture_files/figure-html/objective-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8242 bytes
Input file size = 9112 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7391
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7391

Output IDAT size = 7391 bytes (851 bytes decrease)
Output file size = 7469 bytes (1643 bytes = 18.03% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNmixture_files/figure-html/plot nocov-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34363 bytes
Input file size = 34489 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26881
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26881

Output IDAT size = 26881 bytes (7482 bytes decrease)
Output file size = 26959 bytes (7530 bytes = 21.83% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNmixture_files/figure-html/plot nocov-reverse-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36273 bytes
Input file size = 36399 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27668
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27668

Output IDAT size = 27668 bytes (8605 bytes decrease)
Output file size = 27746 bytes (8653 bytes = 23.77% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNmixture_files/figure-html/plot clustering-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17251 bytes
Input file size = 17353 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12977
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12977

Output IDAT size = 12977 bytes (4274 bytes decrease)
Output file size = 13055 bytes (4298 bytes = 24.77% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNmixture_files/figure-html/plot reordered data-1.png
288x288 pixels, 8 bits/pixel, 252 colors in palette
Input IDAT size = 2497 bytes
Input file size = 3343 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2131
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2131

Output IDAT size = 2131 bytes (366 bytes decrease)
Output file size = 2977 bytes (366 bytes = 10.95% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNmixture_files/figure-html/predicted_position-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20662 bytes
Input file size = 20764 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17283
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17283

Output IDAT size = 17283 bytes (3379 bytes decrease)
Output file size = 17361 bytes (3403 bytes = 16.39% decrease)

--- finished re-building ‘PLNmixture.Rmd’

--- re-building ‘PLNnetwork.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNnetwork_files/figure-html/diagnostic-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 23412 bytes
Input file size = 24294 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21544
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21544

Output IDAT size = 21544 bytes (1868 bytes decrease)
Output file size = 21622 bytes (2672 bytes = 11.00% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNnetwork_files/figure-html/plot-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47309 bytes
Input file size = 47447 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35910
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35910

Output IDAT size = 35910 bytes (11399 bytes decrease)
Output file size = 35988 bytes (11459 bytes = 24.15% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNnetwork_files/figure-html/plot-reverse-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44173 bytes
Input file size = 44311 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 36049
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 36049

Output IDAT size = 36049 bytes (8124 bytes decrease)
Output file size = 36127 bytes (8184 bytes = 18.47% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/PLNnetwork_files/figure-html/path_coeff-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 204010 bytes
Input file size = 204376 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 193985
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 193985

Output IDAT size = 193985 bytes (10025 bytes decrease)
Output file size = 194063 bytes (10313 bytes = 5.05% decrease)


Quitting from lines 175-176 [extract models stars] (PLNnetwork.Rmd)
Error: processing vignette 'PLNnetwork.Rmd' failed with diagnostics:
attempt to apply non-function
--- failed re-building ‘PLNnetwork.Rmd’

--- re-building ‘Trichoptera.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/PLNmodels.Rcheck/vign_test/PLNmodels/vignettes/Trichoptera_files/figure-html/count diplay-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 57047 bytes
Input file size = 57197 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44290
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44290

Output IDAT size = 44290 bytes (12757 bytes decrease)
Output file size = 44368 bytes (12829 bytes = 22.43% decrease)

--- finished re-building ‘Trichoptera.Rmd’

SUMMARY: processing the following files failed:
  ‘PLNPCA.Rmd’ ‘PLNnetwork.Rmd’

Error: Vignette re-building failed.
Execution halted