Error(s) in re-building vignettes:
--- re-building ‘A-summarise_clinical_tables_records.Rmd’ using rmarkdown

Quitting from lines 108-120 [unnamed-chunk-7] (A-summarise_clinical_tables_records.Rmd)
Error: processing vignette 'A-summarise_clinical_tables_records.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `purrr::map()`:
ℹ In index: 1.
Caused by error in `dplyr::collect()`:
! Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! rapi_prepare: Failed to prepare query SELECT
  strata_id,
  SUM(number_subjects * ".data".id_aur) AS counts_number_subjects
FROM (
  SELECT q01.*, 1.0 AS id_aur
  FROM (
    SELECT 1 AS strata_id, q01.*
    FROM (
      SELECT
        CASE WHEN (n = 0.0) THEN 0 WHEN NOT (n = 0.0) THEN 1 END AS number_subjects,
        n
      FROM tmp_020_og_030_1740676749
    ) q01
  ) q01
) q01
GROUP BY strata_id
Error: Binder Error: Referenced table ".data" not found!
Candidate tables: "q01"

LINE 3:   SUM(number_subjects * ".data".id_aur) AS counts_number_subjects
                                ^
--- failed re-building ‘A-summarise_clinical_tables_records.Rmd’

--- re-building ‘B-summarise_concept_set_counts.Rmd’ using rmarkdown

Quitting from lines 17-26 [unnamed-chunk-1] (B-summarise_concept_set_counts.Rmd)
Error: processing vignette 'B-summarise_concept_set_counts.Rmd' failed with diagnostics:
could not find function "eunomia_is_available"
--- failed re-building ‘B-summarise_concept_set_counts.Rmd’

--- re-building ‘C-summarise_observation_period.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-7-1.png
1344x960 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15443 bytes
Input file size = 16310 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11852
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 11816
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 10566
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 10475
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 10475

Output IDAT size = 10475 bytes (4968 bytes decrease)
Output file size = 10553 bytes (5757 bytes = 35.30% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-8-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 18567 bytes
Input file size = 19449 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14842
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 12388
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 12284
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 12284

Output IDAT size = 12284 bytes (6283 bytes decrease)
Output file size = 12362 bytes (7087 bytes = 36.44% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-8-2.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 40123 bytes
Input file size = 40249 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 35112
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 35112

Output IDAT size = 35112 bytes (5011 bytes decrease)
Output file size = 35190 bytes (5059 bytes = 12.57% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-13-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 44641 bytes
Input file size = 45559 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39402
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 38971
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 38971

Output IDAT size = 38971 bytes (5670 bytes decrease)
Output file size = 39049 bytes (6510 bytes = 14.29% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-14-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 191388 bytes
Input file size = 191742 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 148205
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 148205

Output IDAT size = 148205 bytes (43183 bytes decrease)
Output file size = 148283 bytes (43459 bytes = 22.67% decrease)

--- finished re-building ‘C-summarise_observation_period.Rmd’

SUMMARY: processing the following files failed:
  ‘A-summarise_clinical_tables_records.Rmd’
  ‘B-summarise_concept_set_counts.Rmd’

Error: Vignette re-building failed.
Execution halted