Error(s) in re-building vignettes:
  ...
--- re-building ‘A-summarise_clinical_tables_records.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-9-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 54094 bytes
Input file size = 55024 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 47236
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 46927
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 46609
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 46609

Output IDAT size = 46609 bytes (7485 bytes decrease)
Output file size = 46687 bytes (8337 bytes = 15.15% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-10-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 68755 bytes
Input file size = 69709 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 62480
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 62128
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 62012
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 61512
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 61512

Output IDAT size = 61512 bytes (7243 bytes decrease)
Output file size = 61590 bytes (8119 bytes = 11.65% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-11-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 58666 bytes
Input file size = 59608 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52879
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52879

Output IDAT size = 52879 bytes (5787 bytes decrease)
Output file size = 52957 bytes (6651 bytes = 11.16% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-13-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 229769 bytes
Input file size = 230183 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 190565
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 190565

Output IDAT size = 190565 bytes (39204 bytes decrease)
Output file size = 190643 bytes (39540 bytes = 17.18% decrease)

--- finished re-building ‘A-summarise_clinical_tables_records.Rmd’

--- re-building ‘B-summarise_concept_set_counts.Rmd’ using rmarkdown

Quitting from lines 17-26 [unnamed-chunk-1] (B-summarise_concept_set_counts.Rmd)
Error: processing vignette 'B-summarise_concept_set_counts.Rmd' failed with diagnostics:
could not find function "eunomia_is_available"
--- failed re-building ‘B-summarise_concept_set_counts.Rmd’

--- re-building ‘C-summarise_observation_period.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-7-1.png
1344x960 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15522 bytes
Input file size = 16389 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11819
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 10600
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 10555
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 10555

Output IDAT size = 10555 bytes (4967 bytes decrease)
Output file size = 10633 bytes (5756 bytes = 35.12% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-8-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 19412 bytes
Input file size = 20294 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14300
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 11591
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 11553
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 11553

Output IDAT size = 11553 bytes (7859 bytes decrease)
Output file size = 11631 bytes (8663 bytes = 42.69% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-8-2.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39926 bytes
Input file size = 40052 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 36127
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 36127

Output IDAT size = 36127 bytes (3799 bytes decrease)
Output file size = 36205 bytes (3847 bytes = 9.61% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-13-1.png
1344x960 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 43846 bytes
Input file size = 44764 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39157
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 38815
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 38815

Output IDAT size = 38815 bytes (5031 bytes decrease)
Output file size = 38893 bytes (5871 bytes = 13.12% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/C-summarise_observation_period_files/figure-html/unnamed-chunk-14-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 194721 bytes
Input file size = 195075 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 151609
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 151609

Output IDAT size = 151609 bytes (43112 bytes decrease)
Output file size = 151687 bytes (43388 bytes = 22.24% decrease)

--- finished re-building ‘C-summarise_observation_period.Rmd’

SUMMARY: processing the following file failed:
  ‘B-summarise_concept_set_counts.Rmd’

Error: Vignette re-building failed.
Execution halted