Error(s) in re-building vignettes:
  ...
--- re-building ‘birthdeath_deeptime.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16457 bytes
Input file size = 16559 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12456
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12456

Output IDAT size = 12456 bytes (4001 bytes decrease)
Output file size = 12534 bytes (4025 bytes = 24.31% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-8-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17055 bytes
Input file size = 17157 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13490
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13490

Output IDAT size = 13490 bytes (3565 bytes decrease)
Output file size = 13568 bytes (3589 bytes = 20.92% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13808 bytes
Input file size = 13898 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10886
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10886

Output IDAT size = 10886 bytes (2922 bytes decrease)
Output file size = 10964 bytes (2934 bytes = 21.11% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_deeptime_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5055 bytes
Input file size = 5913 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4631
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4612
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4612

Output IDAT size = 4612 bytes (443 bytes decrease)
Output file size = 4690 bytes (1223 bytes = 20.68% decrease)

--- finished re-building ‘birthdeath_deeptime.Rmd’

--- re-building ‘birthdeath_phylogenies.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-4-1.png
288x288 pixels, 8 bits/pixel, 219 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 1749 bytes
Input file size = 2496 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1438
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1431
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1431

Output IDAT size = 1431 bytes (318 bytes decrease)
Output file size = 1509 bytes (987 bytes = 39.54% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7229 bytes
Input file size = 8084 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6581
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6581

Output IDAT size = 6581 bytes (648 bytes decrease)
Output file size = 6659 bytes (1425 bytes = 17.63% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11058 bytes
Input file size = 11148 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8855
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8855

Output IDAT size = 8855 bytes (2203 bytes decrease)
Output file size = 8933 bytes (2215 bytes = 19.87% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-7-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10565 bytes
Input file size = 10655 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8322
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8322

Output IDAT size = 8322 bytes (2243 bytes decrease)
Output file size = 8400 bytes (2255 bytes = 21.16% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-7-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11211 bytes
Input file size = 11301 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8739
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8739

Output IDAT size = 8739 bytes (2472 bytes decrease)
Output file size = 8817 bytes (2484 bytes = 21.98% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22695 bytes
Input file size = 22797 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18296
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18296

Output IDAT size = 18296 bytes (4399 bytes decrease)
Output file size = 18374 bytes (4423 bytes = 19.40% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/birthdeath_phylogenies_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22533 bytes
Input file size = 22635 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18207
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18207

Output IDAT size = 18207 bytes (4326 bytes decrease)
Output file size = 18285 bytes (4350 bytes = 19.22% decrease)


Quitting from lines 286-290 [unnamed-chunk-13] (birthdeath_phylogenies.Rmd)
Error: processing vignette 'birthdeath_phylogenies.Rmd' failed with diagnostics:
Too many trees going extinct

--- failed re-building ‘birthdeath_phylogenies.Rmd’

--- re-building ‘deeptime_clocks.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_clocks_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21191 bytes
Input file size = 21293 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15586
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15586

Output IDAT size = 15586 bytes (5605 bytes decrease)
Output file size = 15664 bytes (5629 bytes = 26.44% decrease)

--- finished re-building ‘deeptime_clocks.Rmd’

--- re-building ‘deeptime_rocks.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-10-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5233 bytes
Input file size = 6091 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4759
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4759

Output IDAT size = 4759 bytes (474 bytes decrease)
Output file size = 4837 bytes (1254 bytes = 20.59% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-11-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12259 bytes
Input file size = 12349 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9210
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9210

Output IDAT size = 9210 bytes (3049 bytes decrease)
Output file size = 9288 bytes (3061 bytes = 24.79% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6080 bytes
Input file size = 6938 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5623
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5623

Output IDAT size = 5623 bytes (457 bytes decrease)
Output file size = 5701 bytes (1237 bytes = 17.83% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-13-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6127 bytes
Input file size = 6985 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5687
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5687

Output IDAT size = 5687 bytes (440 bytes decrease)
Output file size = 5765 bytes (1220 bytes = 17.47% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-14-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5584 bytes
Input file size = 6442 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5118
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5118

Output IDAT size = 5118 bytes (466 bytes decrease)
Output file size = 5196 bytes (1246 bytes = 19.34% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5315 bytes
Input file size = 6170 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4891
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4891

Output IDAT size = 4891 bytes (424 bytes decrease)
Output file size = 4969 bytes (1201 bytes = 19.47% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-17-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12407 bytes
Input file size = 12497 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10420
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10420

Output IDAT size = 10420 bytes (1987 bytes decrease)
Output file size = 10498 bytes (1999 bytes = 16.00% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-18-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14185 bytes
Input file size = 14275 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12242
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12242

Output IDAT size = 12242 bytes (1943 bytes decrease)
Output file size = 12320 bytes (1955 bytes = 13.70% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-19-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14838 bytes
Input file size = 14928 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13091
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13091

Output IDAT size = 13091 bytes (1747 bytes decrease)
Output file size = 13169 bytes (1759 bytes = 11.78% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-20-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17080 bytes
Input file size = 17182 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12620
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12620

Output IDAT size = 12620 bytes (4460 bytes decrease)
Output file size = 12698 bytes (4484 bytes = 26.10% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/deeptime_rocks_files/figure-html/unnamed-chunk-21-1.png
960x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 85738 bytes
Input file size = 85936 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 71968
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 71968

Output IDAT size = 71968 bytes (13770 bytes decrease)
Output file size = 72046 bytes (13890 bytes = 16.16% decrease)

--- finished re-building ‘deeptime_rocks.Rmd’

--- re-building ‘intro_R.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-41-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4840 bytes
Input file size = 5695 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4415
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4397
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4397

Output IDAT size = 4397 bytes (443 bytes decrease)
Output file size = 4475 bytes (1220 bytes = 21.42% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-42-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9821 bytes
Input file size = 10691 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9232
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 9226
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 9226

Output IDAT size = 9226 bytes (595 bytes decrease)
Output file size = 9304 bytes (1387 bytes = 12.97% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-43-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28145 bytes
Input file size = 28259 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22390
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22390

Output IDAT size = 22390 bytes (5755 bytes decrease)
Output file size = 22468 bytes (5791 bytes = 20.49% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-44-1.png
288x288 pixels, 8 bits/pixel, 243 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2999 bytes
Input file size = 3818 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2519
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2507
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2507

Output IDAT size = 2507 bytes (492 bytes decrease)
Output file size = 2585 bytes (1233 bytes = 32.29% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-45-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5590 bytes
Input file size = 6448 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5039
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5010
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5010

Output IDAT size = 5010 bytes (580 bytes decrease)
Output file size = 5088 bytes (1360 bytes = 21.09% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-46-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9515 bytes
Input file size = 10385 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8967
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8967

Output IDAT size = 8967 bytes (548 bytes decrease)
Output file size = 9045 bytes (1340 bytes = 12.90% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/intro_R_files/figure-html/unnamed-chunk-47-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20413 bytes
Input file size = 20515 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14447
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14447

Output IDAT size = 14447 bytes (5966 bytes decrease)
Output file size = 14525 bytes (5990 bytes = 29.20% decrease)

--- finished re-building ‘intro_R.Rmd’

--- re-building ‘phylogenies_and_diversification.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-6-1.png
576x1152 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 114574 bytes
Input file size = 114808 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 90021
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 90021

Output IDAT size = 90021 bytes (24553 bytes decrease)
Output file size = 90099 bytes (24709 bytes = 21.52% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-7-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16927 bytes
Input file size = 17029 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13983
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13983

Output IDAT size = 13983 bytes (2944 bytes decrease)
Output file size = 14061 bytes (2968 bytes = 17.43% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-9-1.png
576x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7084 bytes
Input file size = 7939 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6353
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6353

Output IDAT size = 6353 bytes (731 bytes decrease)
Output file size = 6431 bytes (1508 bytes = 18.99% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/phylogenies_and_diversification_files/figure-html/unnamed-chunk-10-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31923 bytes
Input file size = 32037 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29711
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 29076
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 29076

Output IDAT size = 29076 bytes (2847 bytes decrease)
Output file size = 29154 bytes (2883 bytes = 9.00% decrease)

--- finished re-building ‘phylogenies_and_diversification.Rmd’

--- re-building ‘popgen_drift.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10821 bytes
Input file size = 10911 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8054
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8054

Output IDAT size = 8054 bytes (2767 bytes decrease)
Output file size = 8132 bytes (2779 bytes = 25.47% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-13-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10574 bytes
Input file size = 10664 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8223
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8223

Output IDAT size = 8223 bytes (2351 bytes decrease)
Output file size = 8301 bytes (2363 bytes = 22.16% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-14-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5488 bytes
Input file size = 6346 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4991
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4991

Output IDAT size = 4991 bytes (497 bytes decrease)
Output file size = 5069 bytes (1277 bytes = 20.12% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-17-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17834 bytes
Input file size = 17936 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14373
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14373

Output IDAT size = 14373 bytes (3461 bytes decrease)
Output file size = 14451 bytes (3485 bytes = 19.43% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_drift_files/figure-html/unnamed-chunk-17-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25892 bytes
Input file size = 26006 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20693
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20693

Output IDAT size = 20693 bytes (5199 bytes decrease)
Output file size = 20771 bytes (5235 bytes = 20.13% decrease)

--- finished re-building ‘popgen_drift.Rmd’

--- re-building ‘popgen_intro.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_intro_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3887 bytes
Input file size = 4742 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3416
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3416

Output IDAT size = 3416 bytes (471 bytes decrease)
Output file size = 3494 bytes (1248 bytes = 26.32% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_intro_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8914 bytes
Input file size = 9004 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7060
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7060

Output IDAT size = 7060 bytes (1854 bytes decrease)
Output file size = 7138 bytes (1866 bytes = 20.72% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/popgen_intro_files/figure-html/unnamed-chunk-16-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12370 bytes
Input file size = 12460 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9913
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9913

Output IDAT size = 9913 bytes (2457 bytes decrease)
Output file size = 9991 bytes (2469 bytes = 19.82% decrease)

--- finished re-building ‘popgen_intro.Rmd’

--- re-building ‘popgen_selection.Rmd’ using rmarkdown
--- finished re-building ‘popgen_selection.Rmd’

--- re-building ‘population_genetics.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-3-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41789 bytes
Input file size = 41927 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33147
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33147

Output IDAT size = 33147 bytes (8642 bytes decrease)
Output file size = 33225 bytes (8702 bytes = 20.76% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-5-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 211828 bytes
Input file size = 212206 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 209894
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 209894

Output IDAT size = 209894 bytes (1934 bytes decrease)
Output file size = 209972 bytes (2234 bytes = 1.05% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-6-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6902 bytes
Input file size = 7760 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5986
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5978
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5978

Output IDAT size = 5978 bytes (924 bytes decrease)
Output file size = 6056 bytes (1704 bytes = 21.96% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/population_genetics_files/figure-html/unnamed-chunk-7-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42776 bytes
Input file size = 42914 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33074
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33074

Output IDAT size = 33074 bytes (9702 bytes decrease)
Output file size = 33152 bytes (9762 bytes = 22.75% decrease)

--- finished re-building ‘population_genetics.Rmd’

--- re-building ‘rocks_and_clocks.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-4-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42191 bytes
Input file size = 42329 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40884
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 38739
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 38739

Output IDAT size = 38739 bytes (3452 bytes decrease)
Output file size = 38817 bytes (3512 bytes = 8.30% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-5-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9311 bytes
Input file size = 10181 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8379
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8379

Output IDAT size = 8379 bytes (932 bytes decrease)
Output file size = 8457 bytes (1724 bytes = 16.93% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-5-2.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10030 bytes
Input file size = 10900 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8968
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8968

Output IDAT size = 8968 bytes (1062 bytes decrease)
Output file size = 9046 bytes (1854 bytes = 17.01% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-5-3.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9755 bytes
Input file size = 10625 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8789
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8789

Output IDAT size = 8789 bytes (966 bytes decrease)
Output file size = 8867 bytes (1758 bytes = 16.55% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-10-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44449 bytes
Input file size = 44587 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35747
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35747

Output IDAT size = 35747 bytes (8702 bytes decrease)
Output file size = 35825 bytes (8762 bytes = 19.65% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/evolved.Rcheck/vign_test/evolved/vignettes/rocks_and_clocks_files/figure-html/unnamed-chunk-14-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11705 bytes
Input file size = 11795 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11037
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 10286
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 10286

Output IDAT size = 10286 bytes (1419 bytes decrease)
Output file size = 10364 bytes (1431 bytes = 12.13% decrease)

--- finished re-building ‘rocks_and_clocks.Rmd’

SUMMARY: processing the following file failed:
  ‘birthdeath_phylogenies.Rmd’

Error: Vignette re-building failed.
Execution halted