Running 'testthat.R' [115s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(jlmerclusterperm)
  > 
  > test_check("jlmerclusterperm")
  Julia Version 1.8.0
  Commit 5544a0fab7 (2022-08-17 13:38 UTC)
  Platform Info:
    OS: Windows (x86_64-w64-mingw32)
    CPU: 56 × Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz
    WORD_SIZE: 64
    LIBM: libopenlibm
    LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
    Threads: 1 on 56 virtual cores
  nothing
  ℹ Starting Julia with 2 threads
  ✔ Starting Julia with 2 threads [6.2s]
  
  ℹ Activating package environment
  Precompiling project...
    ✗ GLM
    ✗ MixedModels
    ✗ JlmerClusterPerm
    0 dependencies successfully precompiled in 35 seconds. 105 already precompiled.
    4 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
  ✔ Activating package environment [45.2s]
  
  Status `D:\temp\2025_02_17_01_50_00_19523\RtmpSu5CCt\julia\Project.toml`
  ⌅ [a93c6f00] DataFrames v1.3.6
    [31c24e10] Distributions v0.25.117
  ⌅ [38e38edf] GLM v1.8.3
    [2a59065a] JlmerClusterPerm v0.1.1 `JlmerClusterPerm`
  ⌅ [ff71e718] MixedModels v4.28.0
  ⌅ [92933f4c] ProgressMeter v1.7.2
  ⌅ [74087812] Random123 v1.6.2
  ⌃ [2913bbd2] StatsBase v0.33.21
    [3eaba693] StatsModels v0.7.4
    [fd094767] Suppressor v0.2.8
    [9a3f8284] Random
  Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ cannot be upgraded. To see why use `status --outdated`
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  i Starting Julia with 2 threads
  v Starting Julia with 2 threads [7.4s]
  
  i Activating package environment
  v Activating package environment [11.4s]
  
  i Running package setup scripts (1/11)
  x Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
  i Running package setup scripts (1/11)
  x Running package setup scripts (6/11) [3.8s]
  
  Starting Julia ...
  ✖ Failed to compile jlmerclusterperm. Please submit an issue to <https://github.com/yjunechoe/jlmerclusterperm/issues>.
  [ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
  
  ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
  • On CRAN (7): 'test-jlmer.R:1:1', 'test-julia_rng.R:1:1',
    'test-permute.R:1:1', 'test-progress.R:1:1', 'test-singularity.R:1:1',
    'test-threshold_search.R:1:1', 'test-timewise_statistics.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-aaa-b-setup.R:7:3'): Setup with seed works (use 2 for testing) ──
  Error: Evaluation in Julia failed.
  Original Julia error message:
  LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
   - Run `Pkg.instantiate()` to install all recorded dependencies.
  
  Stacktrace:
    [1] _require(pkg::Base.PkgId)
      @ Base .\loading.jl:1306
    [2] _require_prelocked(uuidkey::Base.PkgId)
      @ Base .\loading.jl:1200
    [3] macro expansion
      @ .\loading.jl:1180 [inlined]
    [4] macro expansion
      @ .\lock.jl:223 [inlined]
    [5] require(into::Module, mod::Symbol)
      @ Base .\loading.jl:1144
    [6] eval
      @ .\boot.jl:368 [inlined]
    [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
      @ Base .\loading.jl:1428
    [8] include_string (repeats 2 times)
      @ .\loading.jl:1438 [inlined]
    [9] mainevalcmd(str::String)
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
   [10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
      @ Base .\essentials.jl:729
   [11] invokelatest(::Any, ::Any, ::Vararg{Any})
      @ Base .\essentials.jl:726
   [12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
   [13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
   [14] serve_repl(sock::Sockets.TCPSocket)
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
   [15] (::Main.RConnector.var"#3#5")()
      @ Main.RConnector .\task.jl:484
  in expression starting at string:1
  Backtrace:
       ▆
    1. ├─testthat::expect_true(...) at test-aaa-b-setup.R:7:3
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. └─jlmerclusterperm::jlmerclusterperm_setup(...)
    5.   └─jlmerclusterperm:::setup_with_progress(...)
    6.     ├─base::withCallingHandlers(...)
    7.     └─jlmerclusterperm:::source_jl(verbose = verbose)
    8.       └─JuliaConnectoR::juliaEval(jl_pkgs[i])
    9.         └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
   10.           ├─base::tryCatch(...)
   11.           │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
   12.           │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   13.           │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   14.           └─JuliaConnectoR:::doCallJulia(funName, jlargs)
   15.             └─JuliaConnectoR:::handleCallbacksAndOutput()
  ── Failure ('test-aaa-b-setup.R:13:3'): RNG initializes to seed=1 counter=0 ────
  get_rng_seed() (`actual`) not equal to 1 (`expected`).
  
  `actual` is NULL
  `expected` is a double vector (1)
  ── Error ('test-aaa-b-setup.R:14:3'): RNG initializes to seed=1 counter=0 ──────
  Error: Evaluation in Julia failed.
  Original Julia error message:
  LoadError: UndefVarError: rng not defined
  Stacktrace:
    [1] top-level scope
      @ string:1
    [2] eval
      @ .\boot.jl:368 [inlined]
    [3] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
      @ Base .\loading.jl:1428
    [4] include_string (repeats 2 times)
      @ .\loading.jl:1438 [inlined]
    [5] mainevalcmd(str::String)
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
    [6] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
      @ Base .\essentials.jl:729
    [7] invokelatest(::Any, ::Any, ::Vararg{Any})
      @ Base .\essentials.jl:726
    [8] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
    [9] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
   [10] serve_repl(sock::Sockets.TCPSocket)
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
   [11] serve(port_hint::Int64; multiclient::Bool, portfile::String)
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:152
   [12] top-level scope
      @ D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\main.jl:23
   [13] include(mod::Module, _path::String)
      @ Base .\Base.jl:419
   [14] exec_options(opts::Base.JLOptions)
      @ Base .\client.jl:303
   [15] _start()
      @ Base .\client.jl:522
  in expression starting at string:1
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(get_rng_state(), 0) at test-aaa-b-setup.R:14:3
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. └─jlmerclusterperm::get_rng_state()
    5.   └─JuliaConnectoR::juliaEval("Int(rng.ctr1)")
    6.     └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
    7.       ├─base::tryCatch(...)
    8.       │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
    9.       │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   10.       │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   11.       └─JuliaConnectoR:::doCallJulia(funName, jlargs)
   12.         └─JuliaConnectoR:::handleCallbacksAndOutput()
  ── Error ('test-clusterpermute.R:3:1'): (code run outside of `test_that()`) ────
  Error: Evaluation in Julia failed.
  Original Julia error message:
  LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
   - Run `Pkg.instantiate()` to install all recorded dependencies.
  
  Stacktrace:
    [1] _require(pkg::Base.PkgId)
      @ Base .\loading.jl:1306
    [2] _require_prelocked(uuidkey::Base.PkgId)
      @ Base .\loading.jl:1200
    [3] macro expansion
      @ .\loading.jl:1180 [inlined]
    [4] macro expansion
      @ .\lock.jl:223 [inlined]
    [5] require(into::Module, mod::Symbol)
      @ Base .\loading.jl:1144
    [6] eval
      @ .\boot.jl:368 [inlined]
    [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
      @ Base .\loading.jl:1428
    [8] include_string (repeats 2 times)
      @ .\loading.jl:1438 [inlined]
    [9] mainevalcmd(str::String)
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
   [10] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
      @ Base .\essentials.jl:729
   [11] invokelatest(::Any, ::Any, ::Vararg{Any})
      @ Base .\essentials.jl:726
   [12] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
   [13] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
   [14] serve_repl(sock::Sockets.TCPSocket)
      @ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
   [15] (::Main.RConnector.var"#3#5")()
      @ Main.RConnector .\task.jl:484
  in expression starting at string:1
  Backtrace:
       ▆
    1. └─jlmerclusterperm::jlmerclusterperm_setup(...) at test-clusterpermute.R:3:1
    2.   └─jlmerclusterperm:::setup_with_progress(...)
    3.     ├─base::withCallingHandlers(...)
    4.     └─jlmerclusterperm:::source_jl(verbose = verbose)
    5.       └─JuliaConnectoR::juliaEval(jl_pkgs[i])
    6.         └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
    7.           ├─base::tryCatch(...)
    8.           │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
    9.           │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   10.           │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
   11.           └─JuliaConnectoR:::doCallJulia(funName, jlargs)
   12.             └─JuliaConnectoR:::handleCallbacksAndOutput()
  
  [ FAIL 4 | WARN 0 | SKIP 7 | PASS 5 ]
  Error: Test failures
  Execution halted