Error(s) in re-building vignettes:
--- re-building ‘Introduction-to-SoilProfileCollection-Objects.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/Introduction-to-SoilProfileCollection-Objects_files/figure-html/unnamed-chunk-1-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8023 bytes
Input file size = 8881 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7095
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7095

Output IDAT size = 7095 bytes (928 bytes decrease)
Output file size = 7173 bytes (1708 bytes = 19.23% decrease)

Failed with error:  'unable to load shared object '/data/gannet/ripley/R/test-dev/sf/libs/sf.so':
  libproj.so.22: cannot open shared object file: No such file or directory'

Quitting from lines 309-328 [unnamed-chunk-2] (Introduction-to-SoilProfileCollection-Objects.Rmd)
Error: processing vignette 'Introduction-to-SoilProfileCollection-Objects.Rmd' failed with diagnostics:
Package 'sf' is required to coerce a SoilProfileCollection to SpatialPointsDataFrame object
--- failed re-building ‘Introduction-to-SoilProfileCollection-Objects.Rmd’

--- re-building ‘Munsell-color-conversion.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/Munsell-color-conversion_files/figure-html/unnamed-chunk-1-1.png
768x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19108 bytes
Input file size = 19210 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15794
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15794

Output IDAT size = 15794 bytes (3314 bytes decrease)
Output file size = 15872 bytes (3338 bytes = 17.38% decrease)

--- finished re-building ‘Munsell-color-conversion.Rmd’

--- re-building ‘NCSP.Rmd’ using rmarkdown

Quitting from lines 39-47 [unnamed-chunk-1] (NCSP.Rmd)
Error: processing vignette 'NCSP.Rmd' failed with diagnostics:
there is no package called 'sharpshootR'
--- failed re-building ‘NCSP.Rmd’

--- re-building ‘aqp-overview.Rmd’ using rmarkdown
--- finished re-building ‘aqp-overview.Rmd’

--- re-building ‘label-placement.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-1-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20466 bytes
Input file size = 20568 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17715
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17715

Output IDAT size = 17715 bytes (2751 bytes decrease)
Output file size = 17793 bytes (2775 bytes = 13.49% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-3-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34749 bytes
Input file size = 34875 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30907
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30907

Output IDAT size = 30907 bytes (3842 bytes decrease)
Output file size = 30985 bytes (3890 bytes = 11.15% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-4-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41873 bytes
Input file size = 42011 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35785
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35785

Output IDAT size = 35785 bytes (6088 bytes decrease)
Output file size = 35863 bytes (6148 bytes = 14.63% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-5-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43172 bytes
Input file size = 43310 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 37037
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 37037

Output IDAT size = 37037 bytes (6135 bytes decrease)
Output file size = 37115 bytes (6195 bytes = 14.30% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-8-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 50618 bytes
Input file size = 50768 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40145
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40145

Output IDAT size = 40145 bytes (10473 bytes decrease)
Output file size = 40223 bytes (10545 bytes = 20.77% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-9-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 124908 bytes
Input file size = 125166 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 99412
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 99412

Output IDAT size = 99412 bytes (25496 bytes decrease)
Output file size = 99490 bytes (25676 bytes = 20.51% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-9-2.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 123231 bytes
Input file size = 123489 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 97635
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 97635

Output IDAT size = 97635 bytes (25596 bytes decrease)
Output file size = 97713 bytes (25776 bytes = 20.87% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-9-3.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 121010 bytes
Input file size = 121256 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94532
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94532

Output IDAT size = 94532 bytes (26478 bytes decrease)
Output file size = 94610 bytes (26646 bytes = 21.97% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-9-4.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 119360 bytes
Input file size = 119606 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 93214
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 93214

Output IDAT size = 93214 bytes (26146 bytes decrease)
Output file size = 93292 bytes (26314 bytes = 22.00% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-9-5.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 120557 bytes
Input file size = 120803 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94004
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94004

Output IDAT size = 94004 bytes (26553 bytes decrease)
Output file size = 94082 bytes (26721 bytes = 22.12% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-9-6.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 123059 bytes
Input file size = 123317 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 96891
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 96891

Output IDAT size = 96891 bytes (26168 bytes decrease)
Output file size = 96969 bytes (26348 bytes = 21.37% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-13-1.png
816x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 86006 bytes
Input file size = 86204 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 68805
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 68805

Output IDAT size = 68805 bytes (17201 bytes decrease)
Output file size = 68883 bytes (17321 bytes = 20.09% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-13-2.png
816x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 110143 bytes
Input file size = 110377 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 87910
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 87910

Output IDAT size = 87910 bytes (22233 bytes decrease)
Output file size = 87988 bytes (22389 bytes = 20.28% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-13-3.png
816x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 220138 bytes
Input file size = 220528 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 216404
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 205777
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 205777

Output IDAT size = 205777 bytes (14361 bytes decrease)
Output file size = 205855 bytes (14673 bytes = 6.65% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-13-4.png
816x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 221090 bytes
Input file size = 221480 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 212356
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 212356

Output IDAT size = 212356 bytes (8734 bytes decrease)
Output file size = 212434 bytes (9046 bytes = 4.08% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-13-5.png
816x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 237825 bytes
Input file size = 238251 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 228233
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 228233

Output IDAT size = 228233 bytes (9592 bytes decrease)
Output file size = 228311 bytes (9940 bytes = 4.17% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-16-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 69815 bytes
Input file size = 69989 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57736
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57736

Output IDAT size = 57736 bytes (12079 bytes decrease)
Output file size = 57814 bytes (12175 bytes = 17.40% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/label-placement_files/figure-html/unnamed-chunk-17-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 152296 bytes
Input file size = 152590 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 134199
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 134199

Output IDAT size = 134199 bytes (18097 bytes decrease)
Output file size = 134277 bytes (18313 bytes = 12.00% decrease)

--- finished re-building ‘label-placement.Rmd’

--- re-building ‘missing-data.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-2-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27958 bytes
Input file size = 28072 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21700
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21700

Output IDAT size = 21700 bytes (6258 bytes decrease)
Output file size = 21778 bytes (6294 bytes = 22.42% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-2-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22671 bytes
Input file size = 22773 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17118
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17118

Output IDAT size = 17118 bytes (5553 bytes decrease)
Output file size = 17196 bytes (5577 bytes = 24.49% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-2-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24690 bytes
Input file size = 24804 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19070
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19070

Output IDAT size = 19070 bytes (5620 bytes decrease)
Output file size = 19148 bytes (5656 bytes = 22.80% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-2-4.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26119 bytes
Input file size = 26233 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20096
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20096

Output IDAT size = 20096 bytes (6023 bytes decrease)
Output file size = 20174 bytes (6059 bytes = 23.10% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-2-5.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34129 bytes
Input file size = 34255 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26278
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26278

Output IDAT size = 26278 bytes (7851 bytes decrease)
Output file size = 26356 bytes (7899 bytes = 23.06% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-3-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35597 bytes
Input file size = 35723 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28617
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28617

Output IDAT size = 28617 bytes (6980 bytes decrease)
Output file size = 28695 bytes (7028 bytes = 19.67% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-3-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35272 bytes
Input file size = 35398 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28219
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28219

Output IDAT size = 28219 bytes (7053 bytes decrease)
Output file size = 28297 bytes (7101 bytes = 20.06% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-3-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35384 bytes
Input file size = 35510 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28475
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28475

Output IDAT size = 28475 bytes (6909 bytes decrease)
Output file size = 28553 bytes (6957 bytes = 19.59% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-3-4.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34577 bytes
Input file size = 34703 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27005
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27005

Output IDAT size = 27005 bytes (7572 bytes decrease)
Output file size = 27083 bytes (7620 bytes = 21.96% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-3-5.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33360 bytes
Input file size = 33486 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25549
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25549

Output IDAT size = 25549 bytes (7811 bytes decrease)
Output file size = 25627 bytes (7859 bytes = 23.47% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-3-6.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37922 bytes
Input file size = 38048 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29258
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29258

Output IDAT size = 29258 bytes (8664 bytes decrease)
Output file size = 29336 bytes (8712 bytes = 22.90% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-3-7.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 40643 bytes
Input file size = 40769 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30504
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30504

Output IDAT size = 30504 bytes (10139 bytes decrease)
Output file size = 30582 bytes (10187 bytes = 24.99% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/aqp.Rcheck/vign_test/aqp/vignettes/missing-data_files/figure-html/unnamed-chunk-3-8.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41984 bytes
Input file size = 42122 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31438
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31438

Output IDAT size = 31438 bytes (10546 bytes decrease)
Output file size = 31516 bytes (10606 bytes = 25.18% decrease)

--- finished re-building ‘missing-data.Rmd’

--- re-building ‘new-in-aqp-2.Rmd’ using rmarkdown
--- finished re-building ‘new-in-aqp-2.Rmd’

SUMMARY: processing the following files failed:
  ‘Introduction-to-SoilProfileCollection-Objects.Rmd’ ‘NCSP.Rmd’

Error: Vignette re-building failed.
Execution halted