Running ‘testthat.R’ [172s/341s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(TestGenerator)
  > 
  > test_check("TestGenerator")
  v Unit Test Definition Created Successfully: 'test'
  v Unit Test Definition Created Successfully: 'test'
  trying URL 'https://example-data.ohdsi.dev/empty_cdm.zip'
  Content type 'application/zip' length 821216248 bytes (783.2 MB)
  ==================================================
  downloaded 783.2 MB
  
  
  Download completed!
  Creating CDM database /home/hornik/tmp/scratch/Rtmp24jmc3/empty_cdm_5.3.zip
  ===================>-----------   63% | ETA:  4s
  ========================>------   80% | ETA:  4s
  Note: method with signature 'DBIConnection#Id' chosen for function 'dbExistsTable',
   target signature 'duckdb_connection#Id'.
   "duckdb_connection#ANY" would also be valid
  ! cdm name not specified and could not be inferred from the cdm source table
  v Patients pushed to blank CDM successfully
  v Unit Test Definition Created Successfully: 'test'
  ! cdm name not specified and could not be inferred from the cdm source table
  v Patients pushed to blank CDM successfully
  v Unit Test Definition Created Successfully: 'test'
  ! cdm name not specified and could not be inferred from the cdm source table
  v Patients pushed to blank CDM successfully
  v Unit Test Definition Created Successfully: 'mimic_sample'
  trying URL 'https://physionet.org/static/published-projects/mimic-iv-demo-omop/mimic-iv-demo-data-in-the-omop-common-data-model-0.9.zip'
  Content type 'application/zip' length 10786504 bytes (10.3 MB)
  ==================================================
  downloaded 10.3 MB
  
  
  Download completed!
  ! Empty Tables Found:
  attribute_definition, cohort_definition, cost, metadata, note, note_nlp,
  payer_plan_period, provider
  v Unit Test Definition Created Successfully: 'test'
  trying URL 'https://physionet.org/static/published-projects/mimic-iv-demo-omop/mimic-iv-demo-data-in-the-omop-common-data-model-0.9.zip'
  Content type 'application/zip' length 10786504 bytes (10.3 MB)
  ==================================================
  downloaded 10.3 MB
  
  
  Download completed!
  ! Empty Tables Found:
  attribute_definition, cohort_definition, cost, metadata, note, note_nlp,
  payer_plan_period, provider
  ! Table with non unique ids and filled with num seq:
  measurement, observation
  v IDs successfully reduced
  v Unit Test Definition Created Successfully: 'test'
  v Patients pushed to blank CDM successfully
  trying URL 'https://physionet.org/static/published-projects/mimic-iv-demo-omop/mimic-iv-demo-data-in-the-omop-common-data-model-0.9.zip'
  [ FAIL 1 | WARN 22 | SKIP 1 | PASS 21 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • manual test (1): 'test-utilsCdm.R:2:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-patients.R:118:3'): convert ids function ───────────────────────
  Error in `utils::download.file(url = "https://physionet.org/static/published-projects/mimic-iv-demo-omop/mimic-iv-demo-data-in-the-omop-common-data-model-0.9.zip", 
      destfile = file.path(pathToData, zipName), mode = "wb", method = "auto", 
      quiet = FALSE, extra = list(progressfunction = function(downloaded, 
          total) {
          progress <- min(1, downloaded/total)
          cli::cli_progress_update(id = pb, set = progress)
      }))`: cannot open URL 'https://physionet.org/static/published-projects/mimic-iv-demo-omop/mimic-iv-demo-data-in-the-omop-common-data-model-0.9.zip'
  Backtrace:
      ▆
   1. └─TestGenerator::downloadTestData(...) at test-patients.R:118:3
   2.   ├─withr::with_options(...)
   3.   │ └─base::force(code)
   4.   └─utils::download.file(...)
  
  [ FAIL 1 | WARN 22 | SKIP 1 | PASS 21 ]
  Error: Test failures
  Execution halted