Error(s) in re-building vignettes:
  ...
--- re-building ‘v0-overview.Rmd’ using rmarkdown
--- finished re-building ‘v0-overview.Rmd’

--- re-building ‘v1-capture-first.Rmd’ using rmarkdown
--- finished re-building ‘v1-capture-first.Rmd’

--- re-building ‘v2-capture-all.Rmd’ using rmarkdown
--- finished re-building ‘v2-capture-all.Rmd’

--- re-building ‘v3-capture-melt.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v3-capture-melt_files/figure-html/unnamed-chunk-3-1.png
960x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20950 bytes
Input file size = 21052 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17438
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17438

Output IDAT size = 17438 bytes (3512 bytes decrease)
Output file size = 17516 bytes (3536 bytes = 16.80% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v3-capture-melt_files/figure-html/unnamed-chunk-5-1.png
960x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 12577 bytes
Input file size = 13444 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11522
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11522

Output IDAT size = 11522 bytes (1055 bytes decrease)
Output file size = 11600 bytes (1844 bytes = 13.72% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v3-capture-melt_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18204 bytes
Input file size = 18306 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17917
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 17003
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 17003

Output IDAT size = 17003 bytes (1201 bytes decrease)
Output file size = 17081 bytes (1225 bytes = 6.69% decrease)

--- finished re-building ‘v3-capture-melt.Rmd’

--- re-building ‘v4-comparisons.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-3-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8235 bytes
Input file size = 9099 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7819
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7819

Output IDAT size = 7819 bytes (416 bytes decrease)
Output file size = 7897 bytes (1202 bytes = 13.21% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8055 bytes
Input file size = 8907 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7583
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7583

Output IDAT size = 7583 bytes (472 bytes decrease)
Output file size = 7661 bytes (1246 bytes = 13.99% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-16-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8790 bytes
Input file size = 9660 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8271
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8271

Output IDAT size = 8271 bytes (519 bytes decrease)
Output file size = 8349 bytes (1311 bytes = 13.57% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v4-comparisons_files/figure-html/unnamed-chunk-19-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7166 bytes
Input file size = 8021 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6754
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6754

Output IDAT size = 6754 bytes (412 bytes decrease)
Output file size = 6832 bytes (1189 bytes = 14.82% decrease)


Quitting from lines 669-685 [unnamed-chunk-21] (v4-comparisons.Rmd)
Error: processing vignette 'v4-comparisons.Rmd' failed with diagnostics:
Can't combine `Allele 1` <character> and `Allele 29` <logical>.
--- failed re-building ‘v4-comparisons.Rmd’

--- re-building ‘v5-helpers.Rmd’ using rmarkdown
--- finished re-building 'v5-helpers.Rmd'

--- re-building ‘v6-engines.Rmd’ using rmarkdown
--- finished re-building ‘v6-engines.Rmd’

--- re-building ‘v7-capture-glob.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nc.Rcheck/vign_test/nc/vignettes/v7-capture-glob_files/figure-html/unnamed-chunk-15-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13699 bytes
Input file size = 14569 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13210
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13210

Output IDAT size = 13210 bytes (489 bytes decrease)
Output file size = 13288 bytes (1281 bytes = 8.79% decrease)

--- finished re-building ‘v7-capture-glob.Rmd’

SUMMARY: processing the following file failed:
  ‘v4-comparisons.Rmd’

Error: Vignette re-building failed.
Execution halted