Running ‘testthat.R’ [7m/17m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(Surrogate)
  > 
  > test_check("Surrogate")
  Loading required namespace: cubature
  Loading required namespace: FNN
  Loading required namespace: parallel
  [1] "Starting parallel simulations"
  [1] "Finishing parallel simulations"
  Loading required namespace: copula
  Loading required namespace: fitdistrplus
  Loading required namespace: stringr
  [ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
  
  ══ Skipped tests (9) ═══════════════════════════════════════════════════════════
  • On CRAN (9): 'test-MetaAnalyticSurvBin.R:3:13',
    'test-MetaAnalyticSurvCat.R:3:13', 'test-MetaAnalyticSurvCont.R:3:13',
    'test-MetaAnalyticSurvSurv.R:3:13', 'test-fit_model_SurvSurv.R:37:13',
    'test-fit_model_SurvSurv.R:58:13', 'test-goodness_of_fit_SurvSurv.R:19:13',
    'test-sensitivity_analysis_SurvSurv.R:44:3',
    'test-sensitivity_intervals.R:94:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-ICA_BinCont_copula.R:9:3'): sample_dvine() works with clayton copula ──
  `output_values` (`actual`) not equal to `expected_values` (`expected`).
  
    `actual`: 0.99131 0.47209 0.65521 0.98636
  `expected`: 0.99153 0.02533 0.52019 0.06634
  ── Failure ('test-ICA_BinCont_copula.R:35:3'): sample_deltas_BinCont() works with clayton copula ──
  `output_values` (`actual`) not equal to `expected_values` (`expected`).
  
    `actual`: 1.76 0.35 1.00 0.00
  `expected`: 1.20 1.00 0.00 0.00
  ── Failure ('test-ICA_BinCont_copula.R:63:3'): estimate_ICA_BinCont() works in a sample example ──
  `output_values` (`actual`) not equal to `expected_values` (`expected`).
  
    `actual`: 1.76 0.35 1.00 0.00
  `expected`: 1.20 1.00 0.00 0.00
  ── Failure ('test-ICA_BinCont_copula.R:91:3'): compute_ICA_BinCont() works in a sample example ──
  `output_values` (`actual`) not equal to `expected_values` (`expected`).
  
    `actual`: 0.2638 -0.5661 0.3336 0.7359
  `expected`: 0.2505 -0.5384 0.3952 0.7446
  ── Failure ('test-ICA_SurvSurv_copula.R:29:3'): compute_ICA_SurvSurv works ─────
  `output_vector` (`actual`) not equal to `check_vector` (`expected`).
  
    `actual`: 0.3354 0.4093 0.8920 0.8380
  `expected`: 0.3299 0.3859 0.8902 0.8350
  ── Failure ('test-ICA_SurvSurv_copula.R:60:3'): compute_ICA_SurvSurv works for different unidentifiable copulas ──
  `output_vector` (`actual`) not equal to `check_vector` (`expected`).
  
    `actual`: 0.4237 0.2766 0.6657 0.5154
  `expected`: 0.4410 0.3103 0.6764 0.5115
  ── Failure ('test-ITCI-Dvine-inference-utils.R:16:3'): Delta method based on numerical derivatives works ──
  `estimated_variance` (`actual`) not equal to matrix(0.309301300833, nrow = 1, ncol = 1) (`expected`).
  
  actual vs expected
                       [,1]
  - actual[1, ]   0.6785348
  + expected[1, ] 0.3093013
  ── Failure ('test-ITCI-Dvine-inference-utils.R:49:3'): Resampling method for the ICA based on fitted model summary information works ──
  c(mean_ICA, sd_ICA) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
  
    `actual`: 0.991708 0.001429
  `expected`: 0.990967 0.001452
  ── Failure ('test-ITCI-Dvine-inference-utils.R:50:3'): Resampling method for the ICA based on fitted model summary information works ──
  c(mean_ICA_p, sd_ICA_p) (`actual`) not equal to c(0.99096747638744, 0.00145160206983) (`expected`).
  
    `actual`: 0.991708 0.001429
  `expected`: 0.990967 0.001452
  ── Failure ('test-sensitivity_analysis_BinCont_copula.R:14:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting ──
  sens_results[, 1] (`actual`) not equal to c(0.407801974151, 0.311636096417) (`expected`).
  
    `actual`: 0.3917 0.3080
  `expected`: 0.4078 0.3116
  ── Failure ('test-sensitivity_analysis_BinCont_copula.R:35:13'): sensitivity_analysis_BinCont_copula() works in a simplified setting with limits in the sensitivity analysis ──
  sens_results[, 1] (`actual`) not equal to c(0.381826406323, 0.301121119697) (`expected`).
  
    `actual`: 0.392 0.291
  `expected`: 0.382 0.301
  ── Failure ('test-sensitivity_analysis_SurvSurv.R:18:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula ──
  `output_vector` (`actual`) not equal to `check_vector` (`expected`).
  
    `actual`: 0.991904525 0.995780207 1.374917943
  `expected`: 0.988990899 0.993308293 1.374917943
  ── Failure ('test-sensitivity_analysis_SurvSurv.R:38:3'): sensitivity_analysis_SurvSurv_copula() works with variable number of knots ──
  `output_vector` (`actual`) not equal to `check_vector` (`expected`).
  
    `actual`: 0.975790156 0.970569834 1.374917943
  `expected`: 0.979074242 0.971166765 1.374917943
  ── Failure ('test-sensitivity_analysis_SurvSurv.R:80:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with variable copula ──
  `output_vector` (`actual`) not equal to `check_vector` (`expected`).
  
    `actual`: 0.970608529 0.964266929 1.374917943
  `expected`: 0.973975832 0.972747027 1.374917943
  ── Failure ('test-sensitivity_analysis_SurvSurv.R:117:3'): sensitivity_analysis_SurvSurv_copula() works on a single core with Clayton copula and four different unidentifiable copulas ──
  c(sens_results$ICA[1], sens_results$sp_rho[1], sens_results$c23[1]) (`actual`) not equal to c(0.996814266963, 0.995511262378, 0.436161760666) (`expected`).
  
    `actual`: 0.997023687 0.995343606 0.436161761
  `expected`: 0.996814267 0.995511262 0.436161761
  ── Failure ('test-sensitivity_analysis_SurvSurv.R:151:3'): sensitivity_analysis_SurvSurv_copula() wth restricted survival times and Spearman's rho as ICA ──
  `output_vector` (`actual`) not equal to `check_vector` (`expected`).
  
    `actual`: 0.822232 0.996771 1.682037
  `expected`: 0.822136 0.995515 1.682037
  ── Failure ('test-sensitivity_intervals.R:45:3'): Intervals of ignorance and uncertainty are correctly computed ──
  c(...) (`actual`) not equal to c(...) (`expected`).
  
      actual      | expected       
  [1] 0.835910421 | 0.835910421 [1]
  [2] 0.997707840 | 0.997707840 [2]
  [3] 0.771344327 - 0.748958557 [3]
  [4] 0.996707340 - 0.997291086 [4]
  [5] 0.777426823 - 0.754652671 [5]
  [6] 0.996552084 - 0.997185131 [6]
  ── Failure ('test-sensitivity_intervals.R:60:3'): Intervals of ignorance and uncertainty are correctly computed ──
  c(...) (`actual`) not equal to c(...) (`expected`).
  
      actual      | expected       
  [1] 0.642646510 | 0.642646510 [1]
  [2] 0.991589288 | 0.991589288 [2]
  [3] 0.562796108 - 0.504365537 [3]
  [4] 0.989819380 - 0.991103511 [4]
  [5] 0.564156839 - 0.521834842 [5]
  [6] 0.989592088 - 0.990989206 [6]
  ── Failure ('test-sensitivity_intervals.R:75:3'): Intervals of ignorance and uncertainty are correctly computed ──
  c(...) (`actual`) not equal to c(...) (`expected`).
  
      actual      | expected       
  [1] 0.751294689 | 0.751294689 [1]
  [2] 0.820984966 | 0.820984966 [2]
  [3] 0.727620865 - 0.711347431 [3]
  [4] 0.820958783 - 0.820793874 [4]
  [5] 0.728769400 - 0.712601776 [5]
  [6] 0.820940724 - 0.820715995 [6]
  
  [ FAIL 19 | WARN 0 | SKIP 9 | PASS 28 ]
  Deleting unused snapshots:
  • goodness_of_fit_SurvSurv/marginal-survival-functions-gof.svg
  • goodness_of_fit_SurvSurv/prob-of-dying-wo-progression-gof.svg
  Error: Test failures
  Execution halted