Error(s) in re-building vignettes:
  ...
--- re-building ‘Seurat.Rmd’ using rmarkdown

Quitting from lines 20-25 [setup] (Seurat.Rmd)
Error: processing vignette 'Seurat.Rmd' failed with diagnostics:
there is no package called 'Seurat'
--- failed re-building ‘Seurat.Rmd’

--- re-building ‘detailedWalkthrough.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-3-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 63797 bytes
Input file size = 63959 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46493
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46493

Output IDAT size = 46493 bytes (17304 bytes decrease)
Output file size = 46571 bytes (17388 bytes = 27.19% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-5-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60276 bytes
Input file size = 60438 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44664
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44664

Output IDAT size = 44664 bytes (15612 bytes decrease)
Output file size = 44742 bytes (15696 bytes = 25.97% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-6-1.png
768x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46945 bytes
Input file size = 47083 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 36738
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 36738

Output IDAT size = 36738 bytes (10207 bytes decrease)
Output file size = 36816 bytes (10267 bytes = 21.81% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-7-1.png
384x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 40132 bytes
Input file size = 40258 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30612
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30612

Output IDAT size = 30612 bytes (9520 bytes decrease)
Output file size = 30690 bytes (9568 bytes = 23.77% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-9-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 63204 bytes
Input file size = 63366 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 49596
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 49596

Output IDAT size = 49596 bytes (13608 bytes decrease)
Output file size = 49674 bytes (13692 bytes = 21.61% decrease)

0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-16-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39874 bytes
Input file size = 40000 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29602
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29602

Output IDAT size = 29602 bytes (10272 bytes decrease)
Output file size = 29680 bytes (10320 bytes = 25.80% decrease)

0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-26-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61530 bytes
Input file size = 61692 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46539
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46539

Output IDAT size = 46539 bytes (14991 bytes decrease)
Output file size = 46617 bytes (15075 bytes = 24.44% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-27-1.png
768x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 99546 bytes
Input file size = 99768 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 75041
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 75041

Output IDAT size = 75041 bytes (24505 bytes decrease)
Output file size = 75119 bytes (24649 bytes = 24.71% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-28-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26076 bytes
Input file size = 26190 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20245
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20245

Output IDAT size = 20245 bytes (5831 bytes decrease)
Output file size = 20323 bytes (5867 bytes = 22.40% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-30-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 71467 bytes
Input file size = 71641 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61205
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61205

Output IDAT size = 61205 bytes (10262 bytes decrease)
Output file size = 61283 bytes (10358 bytes = 14.46% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-32-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 82703 bytes
Input file size = 82901 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 59502
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 59502

Output IDAT size = 59502 bytes (23201 bytes decrease)
Output file size = 59580 bytes (23321 bytes = 28.13% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-34-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52850 bytes
Input file size = 53000 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 41189
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 41189

Output IDAT size = 41189 bytes (11661 bytes decrease)
Output file size = 41267 bytes (11733 bytes = 22.14% decrease)

Warning: ggrepel: 12 unlabeled data points (too many overlaps). Consider increasing max.overlaps
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-36-1.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8271 bytes
Input file size = 9141 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7576
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7576

Output IDAT size = 7576 bytes (695 bytes decrease)
Output file size = 7654 bytes (1487 bytes = 16.27% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-38-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11247 bytes
Input file size = 11337 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7689
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7689

Output IDAT size = 7689 bytes (3558 bytes decrease)
Output file size = 7767 bytes (3570 bytes = 31.49% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-40-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58930 bytes
Input file size = 59092 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 43929
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 43929

Output IDAT size = 43929 bytes (15001 bytes decrease)
Output file size = 44007 bytes (15085 bytes = 25.53% decrease)

0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-41-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61322 bytes
Input file size = 61484 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46171
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46171

Output IDAT size = 46171 bytes (15151 bytes decrease)
Output file size = 46249 bytes (15235 bytes = 24.78% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-41-2.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 59989 bytes
Input file size = 60151 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45489
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45489

Output IDAT size = 45489 bytes (14500 bytes decrease)
Output file size = 45567 bytes (14584 bytes = 24.25% decrease)

--- finished re-building ‘detailedWalkthrough.Rmd’

--- re-building ‘quickstart.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/quickstart_files/figure-html/unnamed-chunk-4-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22584 bytes
Input file size = 22686 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16669
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16669

Output IDAT size = 16669 bytes (5915 bytes decrease)
Output file size = 16747 bytes (5939 bytes = 26.18% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/quickstart_files/figure-html/unnamed-chunk-6-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21256 bytes
Input file size = 21358 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15913
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15913

Output IDAT size = 15913 bytes (5343 bytes decrease)
Output file size = 15991 bytes (5367 bytes = 25.13% decrease)

--- finished re-building ‘quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘Seurat.Rmd’

Error: Vignette re-building failed.
Execution halted