Running ‘test-all.R’ [15s/21s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  > test_check("grainscape")
  Loading required package: grainscape
  
   *** caught segfault ***
  address 0x1, cause 'memory not mapped'
  
  Traceback:
   1: shortest_paths(x@th[[whichThresh]]$goc, which(V(x@th[[whichThresh]]$goc)$polygonId ==     na.omit(startEndPolygons[1])), which(V(x@th[[whichThresh]]$goc)$polygonId ==     na.omit(startEndPolygons[2])), weights = V(x@th[[whichThresh]]$goc)$meanWeight)
   2: .local(x, ...)
   3: corridor(goc, whichThresh = 2, coordSomeNA)
   4: corridor(goc, whichThresh = 2, coordSomeNA)
   5: eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6: withCallingHandlers(code, warning = function(condition) {    if (ignore_deprecation && is_deprecation(condition)) {        return()    }    out$push(condition)    maybe_restart("muffleWarning")})
   7: .capture(act$val <- eval_bare(quo_get_expr(.quo), quo_get_env(.quo)),     ...)
   8: quasi_capture(enquo(object), label, capture_warnings, ignore_deprecation = identical(regexp,     NA))
   9: expect_warning(corridorSomeNA <- corridor(goc, whichThresh = 2,     coordSomeNA))
  10: eval(code, test_env)
  11: eval(code, test_env)
  12: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
  13: doTryCatch(return(expr), name, parentenv, handler)
  14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  15: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  16: doTryCatch(return(expr), name, parentenv, handler)
  17: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  18: tryCatchList(expr, classes, parentenv, handlers)
  19: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  20: test_code(desc, code, env = parent.frame(), reporter = reporter)
  21: test_that("corridor handles NA values", {    cost <- .makeRaster(100, 5)    mpg <- MPG(cost, cost == 1)    goc <- GOC(mpg, nThresh = 5)    coordNoneNA <- rbind(c(10, 10), c(90, 90))    coordSomeNA <- rbind(c(2, 2), c(90, 90))    coordAllNA <- rbind(c(2, 2), c(98, 98))    expect_warning(corridorNoneNA <- corridor(goc, whichThresh = 2,         coordNoneNA), NA)    expect_warning(corridorSomeNA <- corridor(goc, whichThresh = 2,         coordSomeNA))    expect_error(corridorAllNA <- corridor(goc, whichThresh = 2,         coordAllNA))})
  22: eval(code, test_env)
  23: eval(code, test_env)
  24: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
  25: doTryCatch(return(expr), name, parentenv, handler)
  26: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  27: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  28: doTryCatch(return(expr), name, parentenv, handler)
  29: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  30: tryCatchList(expr, classes, parentenv, handlers)
  31: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  32: test_code(test = NULL, code = exprs, env = env, reporter = get_reporter() %||%     StopReporter$new())
  33: source_file(path, env = env(env), desc = desc, error_call = error_call)
  34: FUN(X[[i]], ...)
  35: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
  36: doTryCatch(return(expr), name, parentenv, handler)
  37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  38: tryCatchList(expr, classes, parentenv, handlers)
  39: tryCatch(code, testthat_abort_reporter = function(cnd) {    cat(conditionMessage(cnd), "\n")    NULL})
  40: with_reporter(reporters$multi, lapply(test_paths, test_one_file,     env = env, desc = desc, error_call = error_call))
  41: test_files_serial(test_dir = test_dir, test_package = test_package,     test_paths = test_paths, load_helpers = load_helpers, reporter = reporter,     env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     desc = desc, load_package = load_package, error_call = error_call)
  42: test_files(test_dir = path, test_paths = test_paths, test_package = package,     reporter = reporter, load_helpers = load_helpers, env = env,     stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     load_package = load_package, parallel = parallel)
  43: test_dir("testthat", package = package, reporter = reporter,     ..., load_package = "installed")
  44: test_check("grainscape")
  An irrecoverable exception occurred. R is aborting now ...
  Segmentation fault