Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  add.arrow.Rd: nodelabels
  add.random.Rd: plot.phylo
  anc.Bayes.Rd: ace
  anc.ML.Rd: ace
  anc.trend.Rd: ace
  ancr.Rd: nodelabels
  bd.Rd: birthdeath
  bind.tip.Rd: bind.tree
  bind.tree.simmap.Rd: bind.tree
  cladelabels.Rd: nodelabels
  cophylo.Rd: cophyloplot
  describe.simmap.Rd: all.equal.phylo
  di2multi.simmap.Rd: di2multi, multi2di
  drop.tip.contMap.Rd: drop.tip, keep.tip
  drop.tip.multiSimmap.Rd: drop.tip, keep.tip, drop.tip.multiPhylo
  drop.tip.simmap.Rd: drop.tip, keep.tip, extract.clade
  estDiversity.Rd: ace
  exhaustiveMP.Rd: phyDat, parsimony, optim.parsimony, pratchet
  export.as.xml.Rd: read.nexus
  fancyTree.Rd: drop.tip, plot.phylo
  fastAnc.Rd: ace, pic
  fastMRCA.Rd: getMRCA, mrca
  findMRCA.Rd: mrca, vcv.phylo, getMRCA
  fit.bd.Rd: birthdeath
  fitMk.Rd: ace
  fitPagel.Rd: ace
  force.ultrametric.Rd: nnls.tree, is.ultrametric
  getCladesofSize.Rd: extract.clade
  getDescendants.Rd: Descendants
  getSisters.Rd: Siblings
  labelnodes.Rd: nodelabels
  ladderize.simmap.Rd: ladderize
  lambda.transform.Rd: vcv.phylo
  likMlambda.Rd: vcv.phylo
  linklabels.Rd: nodelabels, tiplabels
  make.simmap.Rd: ace
  map.to.singleton.Rd: plot.phylo, collapse.singles, drop.tip
  midpoint.root.Rd: midpoint, root
  modified.Grafen.Rd: compute.brlen
  mrp.supertree.Rd: pratchet, optim.parsimony, prop.part
  multiC.Rd: vcv.phylo
  multiRF.Rd: prop.part
  nodelabels.cophylo.Rd: nodelabels, edgelabels, tiplabels
  optim.phylo.ls.Rd: nni
  pbtree.Rd: bind.tree
  pgls.Ives.Rd: gls
  phyl.resid.Rd: gls
  phyl.vcv.Rd: vcv.phylo
  phylo.to.map.Rd: map
  phylomorphospace3d.Rd: scatterplot3d
  plotBranchbyTrait.Rd: plot.phylo
  plotSimmap.Rd: nodelabels, plot.phylo
  plotThresh.Rd: plot.phylo
  plotTree.Rd: plot.phylo
  ratebystate.Rd: pic
  ratebytree.Rd: ginv, ace
  read.newick.Rd: read.nexus, read.tree, collapse.singles
  read.simmap.Rd: read.nexus, read.tree
  reorder.backbonePhylo.Rd: reorder.phylo
  reorderSimmap.Rd: reorder.phylo
  rep.phylo.Rd: c.phylo
  reroot.Rd: root
  rerootingMethod.Rd: ace
  resolveNode.Rd: multi2di
  rotateNodes.Rd: rotate
  starTree.Rd: stree
  treeSlice.Rd: extract.clade
  untangle.Rd: plot.phylo, reorder.phylo, read.tree
  vcvPhylo.Rd: vcv.phylo
  writeAncestors.Rd: ace, write.tree
  writeNexus.Rd: write.nexus
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.