Error(s) in re-building vignettes:
  ...
--- re-building ‘A_Honeybee_biology.Rmd’ using rmarkdown
--- finished re-building ‘A_Honeybee_biology.Rmd’

--- re-building ‘B_Multiple_colonies.Rmd’ using rmarkdown
--- finished re-building ‘B_Multiple_colonies.Rmd’

--- re-building ‘C_Colony_events.Rmd’ using rmarkdown
--- finished re-building ‘C_Colony_events.Rmd’

--- re-building ‘D_Crossing.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/D_Crossing_files/figure-html/unnamed-chunk-12-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10148 bytes
Input file size = 10238 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7834
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7834

Output IDAT size = 7834 bytes (2314 bytes decrease)
Output file size = 7912 bytes (2326 bytes = 22.72% decrease)

--- finished re-building ‘D_Crossing.Rmd’

--- re-building ‘E_Genomics.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/plot genoQ with poolW-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9061 bytes
Input file size = 9931 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8549
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8549

Output IDAT size = 8549 bytes (512 bytes decrease)
Output file size = 8627 bytes (1304 bytes = 13.13% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view diagonal-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27718 bytes
Input file size = 27832 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16502
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16502

Output IDAT size = 16502 bytes (11216 bytes decrease)
Output file size = 16580 bytes (11252 bytes = 40.43% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view diagonal-2.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4113 bytes
Input file size = 4968 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3642
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 3628
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 3628

Output IDAT size = 3628 bytes (485 bytes decrease)
Output file size = 3706 bytes (1262 bytes = 25.40% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view non-diagonal-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4012 bytes
Input file size = 4870 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3570
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 3555
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 3555

Output IDAT size = 3555 bytes (457 bytes decrease)
Output file size = 3633 bytes (1237 bytes = 25.40% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs fathers 1-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5565 bytes
Input file size = 6423 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5152
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5152

Output IDAT size = 5152 bytes (413 bytes decrease)
Output file size = 5230 bytes (1193 bytes = 18.57% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs workers 1-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5748 bytes
Input file size = 6606 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5303
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5271
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5271

Output IDAT size = 5271 bytes (477 bytes decrease)
Output file size = 5349 bytes (1257 bytes = 19.03% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs drones 1-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5642 bytes
Input file size = 6500 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5197
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5168
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5168

Output IDAT size = 5168 bytes (474 bytes decrease)
Output file size = 5246 bytes (1254 bytes = 19.29% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/alleleFreq-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5383 bytes
Input file size = 6241 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4988
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4988

Output IDAT size = 4988 bytes (395 bytes decrease)
Output file size = 5066 bytes (1175 bytes = 18.83% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view calcGRMIbd-1.png
288x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11340 bytes
Input file size = 12204 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10817
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 10266
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 10266

Output IDAT size = 10266 bytes (1074 bytes decrease)
Output file size = 10344 bytes (1860 bytes = 15.24% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view calcGRMIbd-2.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13525 bytes
Input file size = 14392 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13112
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12949
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12949

Output IDAT size = 12949 bytes (576 bytes decrease)
Output file size = 13027 bytes (1365 bytes = 9.48% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view non-diagonal1-1.png
288x288 pixels, 8 bits/pixel, 250 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3907 bytes
Input file size = 4747 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3465
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3465

Output IDAT size = 3465 bytes (442 bytes decrease)
Output file size = 3543 bytes (1204 bytes = 25.36% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/view non-diagonal1-2.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4094 bytes
Input file size = 4949 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3628
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3628

Output IDAT size = 3628 bytes (466 bytes decrease)
Output file size = 3706 bytes (1243 bytes = 25.12% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs fathers-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5336 bytes
Input file size = 6194 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4884
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4884

Output IDAT size = 4884 bytes (452 bytes decrease)
Output file size = 4962 bytes (1232 bytes = 19.89% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs workers-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5470 bytes
Input file size = 6328 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5046
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5033
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5033

Output IDAT size = 5033 bytes (437 bytes decrease)
Output file size = 5111 bytes (1217 bytes = 19.23% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/E_Genomics_files/figure-html/Queen vs drones-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5338 bytes
Input file size = 6196 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4921
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4920
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4920

Output IDAT size = 4920 bytes (418 bytes decrease)
Output file size = 4998 bytes (1198 bytes = 19.34% decrease)

--- finished re-building ‘E_Genomics.Rmd’

--- re-building ‘F_Quantitative_Genetics.Rmd’ using rmarkdown
Error: C stack usage  1059330862548 is too close to the limit

 *** caught segfault ***
address 0x7c, cause 'memory not mapped'

Quitting from lines 127-131 [SimParamBee_corA_and_addTrait] (F_Quantitative_Genetics.Rmd)
Error: processing vignette 'F_Quantitative_Genetics.Rmd' failed with diagnostics:
bad value
--- failed re-building ‘F_Quantitative_Genetics.Rmd’

--- re-building ‘G_Sampling_functions.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/G_Sampling_functions_files/figure-html/unnamed-chunk-3-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6426 bytes
Input file size = 7284 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5783
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5783

Output IDAT size = 5783 bytes (643 bytes decrease)
Output file size = 5861 bytes (1423 bytes = 19.54% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/G_Sampling_functions_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4195 bytes
Input file size = 5050 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3697
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3697

Output IDAT size = 3697 bytes (498 bytes decrease)
Output file size = 3775 bytes (1275 bytes = 25.25% decrease)

--- finished re-building ‘G_Sampling_functions.Rmd’

--- re-building ‘Z_FAQ.Rmd’ using rmarkdown
--- finished re-building ‘Z_FAQ.Rmd’

SUMMARY: processing the following file failed:
  ‘F_Quantitative_Genetics.Rmd’

Error: Vignette re-building failed.
Execution halted