Running ‘testthat.R’ [7s/58s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(PubChemR)
  > 
  > # Functions used globally in package tests (testthat) ----
  > allSuccess <- function(object){
  +   all(unlist(lapply(object$result, "[[", "success")))
  + }
  > 
  > testRequest <- function(object, ...){
  +   test_that(paste0("pulling via '", request_args(object, "namespace"), "' is succesfull"), {
  +     expect_true(allSuccess(object))
  +   })
  + 
  +   test_that("prints output to the R Console", {
  +     expect_output(print(object))
  +   })
  + }
  > 
  > # Set 'skipTests' FALSE to run test codes. This is set TRUE to skip
  > # all tests on GitHub actions since some of PubChem requests were incomplete due to
  > # timeout and/or API related issues. BUILD & CHECK actions on GitHub returns error
  > # even if all tests were passed on local installations of R.
  > skipTests <- FALSE
  > 
  > if (!skipTests){
  +   test_check("PubChemR")
  + }
  The file has been saved to '/home/hornik/tmp/scratch/RtmpD4nZiV/aspirin.json'
  The file has been saved to '/home/hornik/tmp/scratch/RtmpD4nZiV/aspirin.json'
  The file has been saved to '/home/hornik/tmp/scratch/RtmpD4nZiV/aspirin.json'
  The file has been saved to '/home/hornik/tmp/scratch/RtmpD4nZiV/aspirin.json'
  The file has been saved to '/home/hornik/tmp/scratch/RtmpD4nZiV/aspirin.sdf'
  
  Request failed [400]. Retrying in 1 seconds...
  Request failed [400]. Retrying in 5.4 seconds...
  SDF file saved successfully:
    File Name: 'aspirin_20241212_182206.sdf'
    Saved at: /home/hornik/tmp/scratch/RtmpD4nZiV
  SDF file saved successfully:
    File Name: 'file.sdf'
    Saved at: /home/hornik/tmp/scratch/RtmpD4nZiV
  'path' is not specified. Saving files into a temporary folder.
  SDF file saved successfully:
    File Name: 'file.sdf'
    Saved at: /home/hornik/tmp/scratch/RtmpD4nZiV
  
   PubChem Substance Details (comment)
  
   Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
   Is a reactant of enzyme EC: 3.1.1.55
  
  
   PubChem Substance Details (comment)
  
   Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
   Is a reactant of enzyme EC: 3.1.1.55
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 201 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • empty test (1): 'test-00_globals.R:21:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-get_substances.R:45:3'): NULL returns for unknown/empty slots. ──
  retrieve(tmp, .slot = "comment", .to.data.frame = TRUE, .idx = 132) is not NULL
  
  `actual` is an S3 object of class <tbl_df/tbl/data.frame>, a list
  `expected` is NULL
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 201 ]
  Error: Test failures
  Execution halted