Running 'testthat.R' [26s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > require(testthat)
  Loading required package: testthat
  > require(Rdiagnosislist)
  Loading required package: Rdiagnosislist
  Loading required package: readxl
  
  Attaching package: 'Rdiagnosislist'
  
  The following object is masked from 'package:stats':
  
      decompose
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, union
  
  > require(bit64)
  Loading required package: bit64
  Loading required package: bit
  
  Attaching package: 'bit'
  
  The following object is masked from 'package:base':
  
      xor
  
  Attaching package bit64
  package:bit64 (c) 2011-2017 Jens Oehlschlaegel
  creators: integer64 runif64 seq :
  coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bitstring
  logical operator: ! & | xor != == < <= >= >
  arithmetic operator: + - * / %/% %% ^
  math: sign abs sqrt log log2 log10
  math: floor ceiling trunc round
  querying: is.integer64 is.vector [is.atomic} [length] format print str
  values: is.na is.nan is.finite is.infinite
  aggregation: any all min max range sum prod
  cumulation: diff cummin cummax cumsum cumprod
  access: length<- [ [<- [[ [[<-
  combine: c rep cbind rbind as.data.frame
  WARNING don't use as subscripts
  WARNING semantics differ from integer
  for more help type ?bit64
  
  Attaching package: 'bit64'
  
  The following object is masked from 'package:utils':
  
      hashtab
  
  The following objects are masked from 'package:base':
  
      %in%, :, is.double, match, order, rank
  
  > require(data.table)
  Loading required package: data.table
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:bit':
  
      setattr
  
  > 
  > test_check("Rdiagnosislist")
                 NAME NROW NCOL MB                                 COLS
   1:            BODY  159    3  0            conceptId,term,laterality
   2: BODY_LATERALITY    0    3  0 conceptId,laterality,nonlat_parentId
   3:          CAUSES   84    2  0                       conceptId,term
   4:        FINDINGS  464    2  0                       conceptId,term
   5:      LATERALITY   24    2  0                       conceptId,term
   6:           MORPH    0    2  0                       conceptId,term
   7:      OTHERCAUSE   36    3  0               conceptId,term,semType
   8:         OVERLAP    0    2  0                    findingId,otherId
   9:            QUAL    2    2  0                       conceptId,term
  10:         SEMTYPE  685    2  0                    conceptId,semType
  11:        SEVERITY    0    2  0                       conceptId,term
  12:           STAGE    0    2  0                       conceptId,term
  13:      TRANSITIVE 5094    2  0              ancestorId,descendantId
               KEY
   1:         term
   2:    conceptId
   3:         term
   4:         term
   5:         term
   6:         term
   7:         term
   8:      otherId
   9:         term
  10:    conceptId
  11:         term
  12:       [NULL]
  13: descendantId
  Total: 0MB using type_size
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 124 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_loadSNOMED.R:14:2'): Test exporting and reloading sample SNOMED dictionary ──
  Error in `sub(folder, "", thisfile)`: invalid regular expression 'D:\temp\2024_12_02_01_50_01_19465\RtmpC4H0rg', reason 'Invalid back reference'
  Backtrace:
      ▆
   1. └─Rdiagnosislist::loadSNOMED(tempdir(), active_only = FALSE) at test_loadSNOMED.R:14:9
   2.   ├─base::message("Attempting to load ", sub(folder, "", thisfile))
   3.   │ └─base::.makeMessage(..., domain = domain, appendLF = appendLF)
   4.   │   └─base::lapply(list(...), as.character)
   5.   └─base::sub(folder, "", thisfile)
  ── Error ('test_loadSNOMED.R:51:2'): Test exporting and reloading multiple files ──
  Error in `sub(folder, "", thisfile)`: invalid regular expression 'D:\temp\2024_12_02_01_50_01_19465\RtmpC4H0rg/1', reason 'Invalid back reference'
  Backtrace:
      ▆
   1. └─Rdiagnosislist::loadSNOMED(...) at test_loadSNOMED.R:51:9
   2.   ├─base::message("Attempting to load ", sub(folder, "", thisfile))
   3.   │ └─base::.makeMessage(..., domain = domain, appendLF = appendLF)
   4.   │   └─base::lapply(list(...), as.character)
   5.   └─base::sub(folder, "", thisfile)
  
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 124 ]
  Error: Test failures
  Execution halted