Error(s) in re-building vignettes:
  ...
--- re-building ‘coord.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_files/figure-html/unnamed-chunk-3-1.png
672x480 pixels, 8 bits/pixel, 251 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5043 bytes
Input file size = 5886 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4258
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4206
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4206

Output IDAT size = 4206 bytes (837 bytes decrease)
Output file size = 4284 bytes (1602 bytes = 27.22% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 8 bits/pixel, 251 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4903 bytes
Input file size = 5746 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4210
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4183
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4183

Output IDAT size = 4183 bytes (720 bytes decrease)
Output file size = 4261 bytes (1485 bytes = 25.84% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_files/figure-html/unnamed-chunk-4-2.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8784 bytes
Input file size = 9654 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7579
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 7540
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 7540

Output IDAT size = 7540 bytes (1244 bytes decrease)
Output file size = 7618 bytes (2036 bytes = 21.09% decrease)

--- finished re-building ‘coord.Rmd’

--- re-building ‘coord_geo.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_geo_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33674 bytes
Input file size = 33800 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 30997
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 30997

Output IDAT size = 30997 bytes (2677 bytes decrease)
Output file size = 31075 bytes (2725 bytes = 8.06% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_geo_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35870 bytes
Input file size = 35996 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 34647
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 33149
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 33149

Output IDAT size = 33149 bytes (2721 bytes decrease)
Output file size = 33227 bytes (2769 bytes = 7.69% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_geo_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32568 bytes
Input file size = 32682 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27806
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27806

Output IDAT size = 27806 bytes (4762 bytes decrease)
Output file size = 27884 bytes (4798 bytes = 14.68% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_geo_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37477 bytes
Input file size = 37603 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31592
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31592

Output IDAT size = 31592 bytes (5885 bytes decrease)
Output file size = 31670 bytes (5933 bytes = 15.78% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_geo_files/figure-html/unnamed-chunk-10-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41169 bytes
Input file size = 41307 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39050
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 38131
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 38131

Output IDAT size = 38131 bytes (3038 bytes decrease)
Output file size = 38209 bytes (3098 bytes = 7.50% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_geo_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14978 bytes
Input file size = 15068 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14009
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 13539
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 13539

Output IDAT size = 13539 bytes (1439 bytes decrease)
Output file size = 13617 bytes (1451 bytes = 9.63% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/coord_geo_files/figure-html/unnamed-chunk-12-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17403 bytes
Input file size = 17505 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15810
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15810

Output IDAT size = 15810 bytes (1593 bytes decrease)
Output file size = 15888 bytes (1617 bytes = 9.24% decrease)

--- finished re-building ‘coord_geo.Rmd’

--- re-building ‘geo.Rmd’ using rmarkdown

Quitting from lines 40-45 [unnamed-chunk-4] (geo.Rmd)
Error: processing vignette 'geo.Rmd' failed with diagnostics:
Timeout was reached [macrostrat.org]: Failed to connect to macrostrat.org port 443 after 10002 ms: Timeout was reached
--- failed re-building ‘geo.Rmd’

--- re-building ‘ggarrange2.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/ggarrange2_files/figure-html/unnamed-chunk-2-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22206 bytes
Input file size = 22308 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17464
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17464

Output IDAT size = 17464 bytes (4742 bytes decrease)
Output file size = 17542 bytes (4766 bytes = 21.36% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/ggarrange2_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 56063 bytes
Input file size = 56213 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44644
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44644

Output IDAT size = 44644 bytes (11419 bytes decrease)
Output file size = 44722 bytes (11491 bytes = 20.44% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/ggarrange2_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 59070 bytes
Input file size = 59232 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46951
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46951

Output IDAT size = 46951 bytes (12119 bytes decrease)
Output file size = 47029 bytes (12203 bytes = 20.60% decrease)

--- finished re-building ‘ggarrange2.Rmd’

--- re-building ‘phylogenies.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/phylogenies_files/figure-html/unnamed-chunk-3-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12816 bytes
Input file size = 12906 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10282
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10282

Output IDAT size = 10282 bytes (2534 bytes decrease)
Output file size = 10360 bytes (2546 bytes = 19.73% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/phylogenies_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17361 bytes
Input file size = 17463 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13739
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13739

Output IDAT size = 13739 bytes (3622 bytes decrease)
Output file size = 13817 bytes (3646 bytes = 20.88% decrease)

--- finished re-building ‘phylogenies.Rmd’

--- re-building ‘time.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/time_files/figure-html/unnamed-chunk-3-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10136 bytes
Input file size = 11006 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9255
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9255

Output IDAT size = 9255 bytes (881 bytes decrease)
Output file size = 9333 bytes (1673 bytes = 15.20% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/time_files/figure-html/unnamed-chunk-4-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32974 bytes
Input file size = 33100 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26286
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26286

Output IDAT size = 26286 bytes (6688 bytes decrease)
Output file size = 26364 bytes (6736 bytes = 20.35% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/time_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36440 bytes
Input file size = 36566 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28871
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28871

Output IDAT size = 28871 bytes (7569 bytes decrease)
Output file size = 28949 bytes (7617 bytes = 20.83% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/time_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37095 bytes
Input file size = 37221 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29080
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29080

Output IDAT size = 29080 bytes (8015 bytes decrease)
Output file size = 29158 bytes (8063 bytes = 21.66% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/time_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37680 bytes
Input file size = 37806 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29609
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29609

Output IDAT size = 29609 bytes (8071 bytes decrease)
Output file size = 29687 bytes (8119 bytes = 21.48% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/time_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37951 bytes
Input file size = 38077 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29831
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29831

Output IDAT size = 29831 bytes (8120 bytes decrease)
Output file size = 29909 bytes (8168 bytes = 21.45% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/time_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16794 bytes
Input file size = 16896 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14602
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14602

Output IDAT size = 14602 bytes (2192 bytes decrease)
Output file size = 14680 bytes (2216 bytes = 13.12% decrease)

--- finished re-building ‘time.Rmd’

--- re-building ‘traits.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/traits_files/figure-html/unnamed-chunk-3-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 20583 bytes
Input file size = 21465 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19407
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19407

Output IDAT size = 19407 bytes (1176 bytes decrease)
Output file size = 19485 bytes (1980 bytes = 9.22% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/traits_files/figure-html/unnamed-chunk-4-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26022 bytes
Input file size = 26136 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18308
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18308

Output IDAT size = 18308 bytes (7714 bytes decrease)
Output file size = 18386 bytes (7750 bytes = 29.65% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/deeptime.Rcheck/vign_test/deeptime/vignettes/traits_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 18798 bytes
Input file size = 19680 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17632
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 17614
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 17600
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 17600

Output IDAT size = 17600 bytes (1198 bytes decrease)
Output file size = 17678 bytes (2002 bytes = 10.17% decrease)

--- finished re-building ‘traits.Rmd’

SUMMARY: processing the following file failed:
  ‘geo.Rmd’

Error: Vignette re-building failed.
Execution halted