Error(s) in re-building vignettes:
  ...
--- re-building ‘anndata.Rmd’ using rmarkdown
--- finished re-building ‘anndata.Rmd’

--- re-building ‘ginhoux.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/show_dimred-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19199 bytes
Input file size = 19301 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14187
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14187

Output IDAT size = 14187 bytes (5012 bytes decrease)
Output file size = 14265 bytes (5036 bytes = 26.09% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/plot_trajectory-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20139 bytes
Input file size = 20241 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15180
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15180

Output IDAT size = 15180 bytes (4959 bytes decrease)
Output file size = 15258 bytes (4983 bytes = 24.62% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/visualise_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15021 bytes
Input file size = 15111 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11452
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11452

Output IDAT size = 11452 bytes (3569 bytes decrease)
Output file size = 11530 bytes (3581 bytes = 23.70% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/ginhoux_files/figure-html/moduled_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15692 bytes
Input file size = 15782 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11492
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11492

Output IDAT size = 11492 bytes (4200 bytes decrease)
Output file size = 11570 bytes (4212 bytes = 26.69% decrease)

--- finished re-building ‘ginhoux.Rmd’

--- re-building ‘simulated-data.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/show_dimred-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18081 bytes
Input file size = 18183 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13317
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13317

Output IDAT size = 13317 bytes (4764 bytes decrease)
Output file size = 13395 bytes (4788 bytes = 26.33% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/plot_trajectory-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19472 bytes
Input file size = 19574 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14652
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14652

Output IDAT size = 14652 bytes (4820 bytes decrease)
Output file size = 14730 bytes (4844 bytes = 24.75% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/visualise_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16253 bytes
Input file size = 16343 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11827
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11827

Output IDAT size = 11827 bytes (4426 bytes decrease)
Output file size = 11905 bytes (4438 bytes = 27.16% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SCORPIUS.Rcheck/vign_test/SCORPIUS/vignettes/simulated-data_files/figure-html/moduled_tafs-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17734 bytes
Input file size = 17836 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12733
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12733

Output IDAT size = 12733 bytes (5001 bytes decrease)
Output file size = 12811 bytes (5025 bytes = 28.17% decrease)

--- finished re-building ‘simulated-data.Rmd’

--- re-building ‘singlecellexperiment.Rmd’ using rmarkdown

Quitting from lines 26-40 [load_data] (singlecellexperiment.Rmd)
Error: processing vignette 'singlecellexperiment.Rmd' failed with diagnostics:
there is no package called 'SingleCellExperiment'
--- failed re-building ‘singlecellexperiment.Rmd’

SUMMARY: processing the following file failed:
  ‘singlecellexperiment.Rmd’

Error: Vignette re-building failed.
Execution halted