Error(s) in re-building vignettes:
  ...
--- re-building ‘CI_fix.Rmd’ using rmarkdown
--- finished re-building ‘CI_fix.Rmd’

--- re-building ‘FAQ_and_limitations.Rmd’ using rmarkdown
--- finished re-building ‘FAQ_and_limitations.Rmd’

--- re-building ‘New_rmcorr_paper_analyses_figures.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/New_rmcorr_paper_analyses_figures_files/figure-html/unnamed-chunk-3-1.png
768x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 40407 bytes
Input file size = 40533 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32823
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 32823

Output IDAT size = 32823 bytes (7584 bytes decrease)
Output file size = 32901 bytes (7632 bytes = 18.83% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/New_rmcorr_paper_analyses_figures_files/figure-html/unnamed-chunk-4-1.png
768x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44005 bytes
Input file size = 44143 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33466
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 33466

Output IDAT size = 33466 bytes (10539 bytes decrease)
Output file size = 33544 bytes (10599 bytes = 24.01% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/New_rmcorr_paper_analyses_figures_files/figure-html/unnamed-chunk-5-1.png
1152x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24302 bytes
Input file size = 24404 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22183
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 21767
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 21767

Output IDAT size = 21767 bytes (2535 bytes decrease)
Output file size = 21845 bytes (2559 bytes = 10.49% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/New_rmcorr_paper_analyses_figures_files/figure-html/unnamed-chunk-6-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51363 bytes
Input file size = 51513 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 49325
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 49325

Output IDAT size = 49325 bytes (2038 bytes decrease)
Output file size = 49403 bytes (2110 bytes = 4.10% decrease)


Quitting from lines 473-580 [unnamed-chunk-7] (New_rmcorr_paper_analyses_figures.Rmd)
Error: processing vignette 'New_rmcorr_paper_analyses_figures.Rmd' failed with diagnostics:
could not find function "kelly"
--- failed re-building ‘New_rmcorr_paper_analyses_figures.Rmd’

--- re-building ‘compcor.Rmd’ using rmarkdown
--- finished re-building ‘compcor.Rmd’

--- re-building ‘estimates_w_NaN.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/estimates_w_NaN_files/figure-html/unnamed-chunk-3-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4821 bytes
Input file size = 5676 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4271
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4271

Output IDAT size = 4271 bytes (550 bytes decrease)
Output file size = 4349 bytes (1327 bytes = 23.38% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/estimates_w_NaN_files/figure-html/unnamed-chunk-3-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 6524 bytes
Input file size = 6602 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5025
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5025

Output IDAT size = 5025 bytes (1499 bytes decrease)
Output file size = 5103 bytes (1499 bytes = 22.71% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/estimates_w_NaN_files/figure-html/unnamed-chunk-4-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13486 bytes
Input file size = 13576 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10432
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10432

Output IDAT size = 10432 bytes (3054 bytes decrease)
Output file size = 10510 bytes (3066 bytes = 22.58% decrease)

--- finished re-building ‘estimates_w_NaN.Rmd’

--- re-building ‘model_diag.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/model_diag_files/figure-html/unnamed-chunk-3-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 49883 bytes
Input file size = 50033 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35502
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35502

Output IDAT size = 35502 bytes (14381 bytes decrease)
Output file size = 35580 bytes (14453 bytes = 28.89% decrease)

--- finished re-building ‘model_diag.Rmd’

--- re-building ‘overfitting.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/overfitting_files/figure-html/unnamed-chunk-4-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29623 bytes
Input file size = 29737 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22259
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22259

Output IDAT size = 22259 bytes (7364 bytes decrease)
Output file size = 22337 bytes (7400 bytes = 24.88% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/overfitting_files/figure-html/unnamed-chunk-5-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35736 bytes
Input file size = 35862 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27948
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27948

Output IDAT size = 27948 bytes (7788 bytes decrease)
Output file size = 28026 bytes (7836 bytes = 21.85% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/overfitting_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15988 bytes
Input file size = 16078 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12152
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12152

Output IDAT size = 12152 bytes (3836 bytes decrease)
Output file size = 12230 bytes (3848 bytes = 23.93% decrease)

--- finished re-building ‘overfitting.Rmd’

--- re-building ‘repro_bootstrapping.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/repro_bootstrapping_files/figure-html/unnamed-chunk-3-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13479 bytes
Input file size = 13569 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10561
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10561

Output IDAT size = 10561 bytes (2918 bytes decrease)
Output file size = 10639 bytes (2930 bytes = 21.59% decrease)

--- finished re-building ‘repro_bootstrapping.Rmd’

--- re-building ‘rmcorr_mat.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/rmcorr_mat_files/figure-html/unnamed-chunk-3-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30736 bytes
Input file size = 30850 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25558
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25558

Output IDAT size = 25558 bytes (5178 bytes decrease)
Output file size = 25636 bytes (5214 bytes = 16.90% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/rmcorr.Rcheck/vign_test/rmcorr/vignettes/rmcorr_mat_files/figure-html/unnamed-chunk-4-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20951 bytes
Input file size = 21053 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17613
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17613

Output IDAT size = 17613 bytes (3338 bytes decrease)
Output file size = 17691 bytes (3362 bytes = 15.97% decrease)

--- finished re-building ‘rmcorr_mat.Rmd’

SUMMARY: processing the following file failed:
  ‘New_rmcorr_paper_analyses_figures.Rmd’

Error: Vignette re-building failed.
Execution halted