Error(s) in re-building vignettes:
--- re-building ‘consistencychecking-3.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-8-1.png
672x240 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19052 bytes
Input file size = 19154 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14912
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14912

Output IDAT size = 14912 bytes (4140 bytes decrease)
Output file size = 14990 bytes (4164 bytes = 21.74% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-8-2.png
672x240 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33681 bytes
Input file size = 33807 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26014
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26014

Output IDAT size = 26014 bytes (7667 bytes decrease)
Output file size = 26092 bytes (7715 bytes = 22.82% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/consistencychecking-3_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31267 bytes
Input file size = 31381 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25404
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25404

Output IDAT size = 25404 bytes (5863 bytes decrease)
Output file size = 25482 bytes (5899 bytes = 18.80% decrease)

--- finished re-building ‘consistencychecking-3.Rmd’

--- re-building ‘dataexploration-1.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-1-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19072 bytes
Input file size = 19174 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16320
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16320

Output IDAT size = 16320 bytes (2752 bytes decrease)
Output file size = 16398 bytes (2776 bytes = 14.48% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-3-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 119981 bytes
Input file size = 120227 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 88771
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 88771

Output IDAT size = 88771 bytes (31210 bytes decrease)
Output file size = 88849 bytes (31378 bytes = 26.10% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25739 bytes
Input file size = 25853 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19919
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19919

Output IDAT size = 19919 bytes (5820 bytes decrease)
Output file size = 19997 bytes (5856 bytes = 22.65% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 131032 bytes
Input file size = 131290 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94428
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94428

Output IDAT size = 94428 bytes (36604 bytes decrease)
Output file size = 94506 bytes (36784 bytes = 28.02% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/pain.time-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 79749 bytes
Input file size = 79935 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57952
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57952

Output IDAT size = 57952 bytes (21797 bytes decrease)
Output file size = 58030 bytes (21905 bytes = 27.40% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/obese.time-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 64122 bytes
Input file size = 64284 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45061
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45061

Output IDAT size = 45061 bytes (19061 bytes decrease)
Output file size = 45139 bytes (19145 bytes = 29.78% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/dataexploration-1_files/figure-html/pain.binplot-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 86682 bytes
Input file size = 86880 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 63247
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 63247

Output IDAT size = 63247 bytes (23435 bytes decrease)
Output file size = 63325 bytes (23555 bytes = 27.11% decrease)

--- finished re-building ‘dataexploration-1.Rmd’

--- re-building ‘mbnmatime-overview.Rmd’ using rmarkdown
--- finished re-building ‘mbnmatime-overview.Rmd’

--- re-building ‘outputs-4.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 91930 bytes
Input file size = 92140 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66765
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 66765

Output IDAT size = 66765 bytes (25165 bytes decrease)
Output file size = 66843 bytes (25297 bytes = 27.45% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20301 bytes
Input file size = 20403 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17131
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17131

Output IDAT size = 17131 bytes (3170 bytes decrease)
Output file size = 17209 bytes (3194 bytes = 15.65% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-12-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55365 bytes
Input file size = 55515 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39379
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39379

Output IDAT size = 39379 bytes (15986 bytes decrease)
Output file size = 39457 bytes (16058 bytes = 28.93% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/outputs-4_files/figure-html/unnamed-chunk-13-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 81727 bytes
Input file size = 81913 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 62030
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 62030

Output IDAT size = 62030 bytes (19697 bytes decrease)
Output file size = 62108 bytes (19805 bytes = 24.18% decrease)

--- finished re-building ‘outputs-4.Rmd’

--- re-building ‘predictions-5.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-5-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 67131 bytes
Input file size = 67305 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 53203
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 53203

Output IDAT size = 53203 bytes (13928 bytes decrease)
Output file size = 53281 bytes (14024 bytes = 20.84% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-7-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31391 bytes
Input file size = 31505 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23935
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23935

Output IDAT size = 23935 bytes (7456 bytes decrease)
Output file size = 24013 bytes (7492 bytes = 23.78% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 75825 bytes
Input file size = 76011 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 59113
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 59113

Output IDAT size = 59113 bytes (16712 bytes decrease)
Output file size = 59191 bytes (16820 bytes = 22.13% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/MBNMAtime.Rcheck/vign_test/MBNMAtime/vignettes/predictions-5_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55836 bytes
Input file size = 55986 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42146
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42146

Output IDAT size = 42146 bytes (13690 bytes decrease)
Output file size = 42224 bytes (13762 bytes = 24.58% decrease)

--- finished re-building ‘predictions-5.Rmd’

--- re-building ‘runmbnmatime-2.Rmd’ using rmarkdown

Quitting from lines 122-123 [unnamed-chunk-3] (runmbnmatime-2.Rmd)
Error: processing vignette 'runmbnmatime-2.Rmd' failed with diagnostics:
non-numeric argument to mathematical function
--- failed re-building ‘runmbnmatime-2.Rmd’

SUMMARY: processing the following file failed:
  ‘runmbnmatime-2.Rmd’

Error: Vignette re-building failed.
Execution halted