Error(s) in re-building vignettes:
  ...
--- re-building ‘cmpsR-vignette.Rmd’ using rmarkdown
** Processing: figures/vignette-signature_plot-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 53572 bytes
Input file size = 54502 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 50740
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 50381
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 45450
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 44381
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 44381

Output IDAT size = 44381 bytes (9191 bytes decrease)
Output file size = 44459 bytes (10043 bytes = 18.43% decrease)

** Processing: figures/vignette-plot_example-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 67764 bytes
Input file size = 67938 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 66144
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 66121
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 5		IDAT size = 66121

Output IDAT size = 66121 bytes (1643 bytes decrease)
Output file size = 66199 bytes (1739 bytes = 2.56% decrease)

** Processing: figures/vignette-plot_cut_x-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 50625 bytes
Input file size = 50775 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 43785
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 43785

Output IDAT size = 43785 bytes (6840 bytes decrease)
Output file size = 43863 bytes (6912 bytes = 13.61% decrease)

** Processing: figures/vignette-plot_y_and_seg-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45012 bytes
Input file size = 45150 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 40560
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 40560

Output IDAT size = 40560 bytes (4452 bytes decrease)
Output file size = 40638 bytes (4512 bytes = 9.99% decrease)

** Processing: figures/vignette-plot_ccf_y_seg-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52479 bytes
Input file size = 52629 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 47600
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 47600

Output IDAT size = 47600 bytes (4879 bytes decrease)
Output file size = 47678 bytes (4951 bytes = 9.41% decrease)

** Processing: figures/vignette-plot_x_itself-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 122053 bytes
Input file size = 122299 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 90080
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 90080

Output IDAT size = 90080 bytes (31973 bytes decrease)
Output file size = 90158 bytes (32141 bytes = 26.28% decrease)

** Processing: figures/vignette-plot_real_xy-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 122303 bytes
Input file size = 122549 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 90557
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 90557

Output IDAT size = 90557 bytes (31746 bytes decrease)
Output file size = 90635 bytes (31914 bytes = 26.04% decrease)

** Processing: figures/vignette-plot_false_positive-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17503 bytes
Input file size = 18385 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15233
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15233

Output IDAT size = 15233 bytes (2270 bytes decrease)
Output file size = 15311 bytes (3074 bytes = 16.72% decrease)

** Processing: figures/vignette-plot_false_positive-2.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 88736 bytes
Input file size = 88934 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 73949
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 73949

Output IDAT size = 73949 bytes (14787 bytes decrease)
Output file size = 74027 bytes (14907 bytes = 16.76% decrease)


Quitting from lines 309-313 [plot_ccf_seg7] (cmpsR-vignette.Rmd)
Error: processing vignette 'cmpsR-vignette.Rmd' failed with diagnostics:
there is no package called 'ggpubr'
--- failed re-building ‘cmpsR-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘cmpsR-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted