Error(s) in re-building vignettes:
  ...
--- re-building ‘Bootstrapping.Rmd’ using rmarkdown

Quitting from lines 21-25 [setup2] (Bootstrapping.Rmd)
Error: processing vignette 'Bootstrapping.Rmd' failed with diagnostics:
there is no package called 'car'
--- failed re-building ‘Bootstrapping.Rmd’

--- re-building ‘Confidence-Bands.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Oats-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17366 bytes
Input file size = 17468 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14677
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14677

Output IDAT size = 14677 bytes (2689 bytes decrease)
Output file size = 14755 bytes (2713 bytes = 15.53% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Oats-fit-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15035 bytes
Input file size = 15125 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13240
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13240

Output IDAT size = 13240 bytes (1795 bytes decrease)
Output file size = 13318 bytes (1807 bytes = 11.95% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Oats-ggplot-geom-smooth-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16275 bytes
Input file size = 16365 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14352
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14352

Output IDAT size = 14352 bytes (1923 bytes decrease)
Output file size = 14430 bytes (1935 bytes = 11.82% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Oats-lm-predict-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19611 bytes
Input file size = 19713 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16596
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16596

Output IDAT size = 16596 bytes (3015 bytes decrease)
Output file size = 16674 bytes (3039 bytes = 15.42% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Oats-lm-boot-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17681 bytes
Input file size = 17783 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14831
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14831

Output IDAT size = 14831 bytes (2850 bytes decrease)
Output file size = 14909 bytes (2874 bytes = 16.16% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Loblolly-1.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6996 bytes
Input file size = 7854 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6270
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6270

Output IDAT size = 6270 bytes (726 bytes decrease)
Output file size = 6348 bytes (1506 bytes = 19.17% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Loblolly-bootstrap-estimate-2-1.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 23190 bytes
Input file size = 24072 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21350
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 21344
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 21344

Output IDAT size = 21344 bytes (1846 bytes decrease)
Output file size = 21422 bytes (2650 bytes = 11.01% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Loblolly-methods-3-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36996 bytes
Input file size = 37122 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27755
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27755

Output IDAT size = 27755 bytes (9241 bytes decrease)
Output file size = 27833 bytes (9289 bytes = 25.02% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Puromycin-1-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17771 bytes
Input file size = 17873 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15650
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15650

Output IDAT size = 15650 bytes (2121 bytes decrease)
Output file size = 15728 bytes (2145 bytes = 12.00% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Puromycin-3-1.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 18189 bytes
Input file size = 19071 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16911
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 16730
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 16730

Output IDAT size = 16730 bytes (1459 bytes decrease)
Output file size = 16808 bytes (2263 bytes = 11.87% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Puromycin-5-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18370 bytes
Input file size = 18472 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16280
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16280

Output IDAT size = 16280 bytes (2090 bytes decrease)
Output file size = 16358 bytes (2114 bytes = 11.44% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Puromycin-prd-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18021 bytes
Input file size = 18123 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16528
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 16025
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 16025

Output IDAT size = 16025 bytes (1996 bytes decrease)
Output file size = 16103 bytes (2020 bytes = 11.15% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/maizeleafext-1.png
576x384 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7669 bytes
Input file size = 8524 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6573
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6573

Output IDAT size = 6573 bytes (1096 bytes decrease)
Output file size = 6651 bytes (1873 bytes = 21.97% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/maizeleafext-2.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15478 bytes
Input file size = 15568 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13823
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 13629
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 13629

Output IDAT size = 13629 bytes (1849 bytes decrease)
Output file size = 13707 bytes (1861 bytes = 11.95% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/maizeleafext-3-1.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 18842 bytes
Input file size = 19724 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17417
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 17346
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 17346

Output IDAT size = 17346 bytes (1496 bytes decrease)
Output file size = 17424 bytes (2300 bytes = 11.66% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Theop-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34063 bytes
Input file size = 34189 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26787
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26787

Output IDAT size = 26787 bytes (7276 bytes decrease)
Output file size = 26865 bytes (7324 bytes = 21.42% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Theop-PB-within-subject-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 62811 bytes
Input file size = 62973 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45346
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45346

Output IDAT size = 45346 bytes (17465 bytes decrease)
Output file size = 45424 bytes (17549 bytes = 27.87% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Confidence-Bands_files/figure-html/Theop-PB-between-subjects-1.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 22223 bytes
Input file size = 23105 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20437
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20437

Output IDAT size = 20437 bytes (1786 bytes decrease)
Output file size = 20515 bytes (2590 bytes = 11.21% decrease)

--- finished re-building ‘Confidence-Bands.Rmd’

--- re-building ‘Models-and-Functions.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Models-and-Functions_files/figure-html/lm-1-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3792 bytes
Input file size = 4647 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3269
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 3256
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 3256

Output IDAT size = 3256 bytes (536 bytes decrease)
Output file size = 3334 bytes (1313 bytes = 28.25% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Models-and-Functions_files/figure-html/lm-var_cov-1.png
288x288 pixels, 8 bits/pixel, 214 colors in palette
Input IDAT size = 2169 bytes
Input file size = 2901 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1795
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1795

Output IDAT size = 1795 bytes (374 bytes decrease)
Output file size = 2527 bytes (374 bytes = 12.89% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Models-and-Functions_files/figure-html/gls-chickweight-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8503 bytes
Input file size = 9373 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7703
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7703

Output IDAT size = 7703 bytes (800 bytes decrease)
Output file size = 7781 bytes (1592 bytes = 16.98% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Models-and-Functions_files/figure-html/gls-chickweight-weights-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7684 bytes
Input file size = 7762 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5952
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5952

Output IDAT size = 5952 bytes (1732 bytes decrease)
Output file size = 6030 bytes (1732 bytes = 22.31% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Models-and-Functions_files/figure-html/gls-chickweight-weights-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8165 bytes
Input file size = 8243 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6423
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6423

Output IDAT size = 6423 bytes (1742 bytes decrease)
Output file size = 6501 bytes (1742 bytes = 21.13% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Models-and-Functions_files/figure-html/gls-chickweight-weights-corr-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11412 bytes
Input file size = 11502 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9095
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9095

Output IDAT size = 9095 bytes (2317 bytes decrease)
Output file size = 9173 bytes (2329 bytes = 20.25% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/Models-and-Functions_files/figure-html/ChickWeight-ggplot2-facet-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11383 bytes
Input file size = 12253 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10918
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10918

Output IDAT size = 10918 bytes (465 bytes decrease)
Output file size = 10996 bytes (1257 bytes = 10.26% decrease)

--- finished re-building ‘Models-and-Functions.Rmd’

--- re-building ‘nlraa-AgronJ-paper.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa-AgronJ-paper_files/figure-html/sm-ggplot-1.png
672x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 19008 bytes
Input file size = 19890 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16357
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16357

Output IDAT size = 16357 bytes (2651 bytes decrease)
Output file size = 16435 bytes (3455 bytes = 17.37% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa-AgronJ-paper_files/figure-html/nls-list-plot-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43241 bytes
Input file size = 43379 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35534
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 35534

Output IDAT size = 35534 bytes (7707 bytes decrease)
Output file size = 35612 bytes (7767 bytes = 17.90% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa-AgronJ-paper_files/figure-html/nls-list-plot-2.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39377 bytes
Input file size = 39503 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30406
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30406

Output IDAT size = 30406 bytes (8971 bytes decrease)
Output file size = 30484 bytes (9019 bytes = 22.83% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa-AgronJ-paper_files/figure-html/plot-resid-nlme-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52948 bytes
Input file size = 53098 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42819
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42819

Output IDAT size = 42819 bytes (10129 bytes decrease)
Output file size = 42897 bytes (10201 bytes = 19.21% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa-AgronJ-paper_files/figure-html/plot-resid-nlme-2.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 100429 bytes
Input file size = 100651 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 81263
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 81263

Output IDAT size = 81263 bytes (19166 bytes decrease)
Output file size = 81341 bytes (19310 bytes = 19.19% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa-AgronJ-paper_files/figure-html/plot-bgf2-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46638 bytes
Input file size = 46776 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 38117
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 38117

Output IDAT size = 38117 bytes (8521 bytes decrease)
Output file size = 38195 bytes (8581 bytes = 18.34% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa-AgronJ-paper_files/figure-html/fit5-plot-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52686 bytes
Input file size = 52836 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42482
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 42482

Output IDAT size = 42482 bytes (10204 bytes decrease)
Output file size = 42560 bytes (10276 bytes = 19.45% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa-AgronJ-paper_files/figure-html/plot-fit8-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55584 bytes
Input file size = 55734 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44843
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44843

Output IDAT size = 44843 bytes (10741 bytes decrease)
Output file size = 44921 bytes (10813 bytes = 19.40% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa-AgronJ-paper_files/figure-html/fit8-fitted-plot-1.png
672x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 26285 bytes
Input file size = 27179 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22973
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22973

Output IDAT size = 22973 bytes (3312 bytes decrease)
Output file size = 23051 bytes (4128 bytes = 15.19% decrease)

--- finished re-building ‘nlraa-AgronJ-paper.Rmd’

--- re-building ‘nlraa.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa_files/figure-html/sm-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30114 bytes
Input file size = 30228 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25460
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25460

Output IDAT size = 25460 bytes (4654 bytes decrease)
Output file size = 25538 bytes (4690 bytes = 15.52% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa_files/figure-html/lfmc-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33933 bytes
Input file size = 34059 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28872
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28872

Output IDAT size = 28872 bytes (5061 bytes decrease)
Output file size = 28950 bytes (5109 bytes = 15.00% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa_files/figure-html/swpg-1.png
672x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8609 bytes
Input file size = 9479 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7127
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7127

Output IDAT size = 7127 bytes (1482 bytes decrease)
Output file size = 7205 bytes (2274 bytes = 23.99% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa_files/figure-html/barley-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35975 bytes
Input file size = 36101 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30414
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30414

Output IDAT size = 30414 bytes (5561 bytes decrease)
Output file size = 30492 bytes (5609 bytes = 15.54% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa_files/figure-html/maizeleafext-1.png
672x576 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13372 bytes
Input file size = 14242 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11018
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11018

Output IDAT size = 11018 bytes (2354 bytes decrease)
Output file size = 11096 bytes (3146 bytes = 22.09% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa_files/figure-html/barleyG-mixed-1.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31592 bytes
Input file size = 31706 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26487
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26487

Output IDAT size = 26487 bytes (5105 bytes decrease)
Output file size = 26565 bytes (5141 bytes = 16.21% decrease)

** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/nlraa.Rcheck/vign_test/nlraa/vignettes/nlraa_files/figure-html/barleyG-mixed-2.png
672x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 68962 bytes
Input file size = 69136 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 58240
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 58240

Output IDAT size = 58240 bytes (10722 bytes decrease)
Output file size = 58318 bytes (10818 bytes = 15.65% decrease)

--- finished re-building ‘nlraa.Rmd’

SUMMARY: processing the following file failed:
  ‘Bootstrapping.Rmd’

Error: Vignette re-building failed.
Execution halted