Error(s) in re-building vignettes:
  ...
--- re-building ‘a_data_generation.Rmd’ using rmarkdown

Quitting from lines 23-38 [setup] (a_data_generation.Rmd)
Error: processing vignette 'a_data_generation.Rmd' failed with diagnostics:
there is no package called 'usethis'
--- failed re-building ‘a_data_generation.Rmd’

--- re-building ‘b_routine_diagnostics.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-5-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22104 bytes
Input file size = 22206 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20281
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 19651
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 19651

Output IDAT size = 19651 bytes (2453 bytes decrease)
Output file size = 19729 bytes (2477 bytes = 11.15% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-6-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39424 bytes
Input file size = 39550 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 34520
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 34520

Output IDAT size = 34520 bytes (4904 bytes decrease)
Output file size = 34598 bytes (4952 bytes = 12.52% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-7-1.png
900x675 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10795 bytes
Input file size = 11665 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8693
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8693

Output IDAT size = 8693 bytes (2102 bytes decrease)
Output file size = 8771 bytes (2894 bytes = 24.81% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-11-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54591 bytes
Input file size = 54741 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44682
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 44682

Output IDAT size = 44682 bytes (9909 bytes decrease)
Output file size = 44760 bytes (9981 bytes = 18.23% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/b_routine_diagnostics_files/figure-html/unnamed-chunk-17-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51345 bytes
Input file size = 51495 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 41754
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 41754

Output IDAT size = 41754 bytes (9591 bytes decrease)
Output file size = 41832 bytes (9663 bytes = 18.76% decrease)

--- finished re-building ‘b_routine_diagnostics.Rmd’

--- re-building ‘c_multivariate_missingness.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/c_multivariate_missingness_files/figure-html/unnamed-chunk-4-1.png
900x675 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8063 bytes
Input file size = 8918 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6444
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6444

Output IDAT size = 6444 bytes (1619 bytes decrease)
Output file size = 6522 bytes (2396 bytes = 26.87% decrease)

--- finished re-building ‘c_multivariate_missingness.Rmd’

--- re-building ‘d_narfcs_sensitivity_analysis.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-3-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 49906 bytes
Input file size = 50056 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39816
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39816

Output IDAT size = 39816 bytes (10090 bytes decrease)
Output file size = 39894 bytes (10162 bytes = 20.30% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-6-1.png
900x675 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 22563 bytes
Input file size = 23445 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20419
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20419

Output IDAT size = 20419 bytes (2144 bytes decrease)
Output file size = 20497 bytes (2948 bytes = 12.57% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-8-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 53311 bytes
Input file size = 53461 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 41158
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 41158

Output IDAT size = 41158 bytes (12153 bytes decrease)
Output file size = 41236 bytes (12225 bytes = 22.87% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/smdi.Rcheck/vign_test/smdi/vignettes/d_narfcs_sensitivity_analysis_files/figure-html/unnamed-chunk-10-1.png
900x675 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52477 bytes
Input file size = 52627 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39892
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39892

Output IDAT size = 39892 bytes (12585 bytes decrease)
Output file size = 39970 bytes (12657 bytes = 24.05% decrease)

--- finished re-building ‘d_narfcs_sensitivity_analysis.Rmd’

--- re-building ‘smdi.Rmd’ using rmarkdown
--- finished re-building ‘smdi.Rmd’

SUMMARY: processing the following file failed:
  ‘a_data_generation.Rmd’

Error: Vignette re-building failed.
Execution halted