Error(s) in re-building vignettes:
--- re-building ‘cutpointr.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_files/figure-html/unnamed-chunk-4-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13405 bytes
Input file size = 14275 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11964
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11964

Output IDAT size = 11964 bytes (1441 bytes decrease)
Output file size = 12042 bytes (2233 bytes = 15.64% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_files/figure-html/unnamed-chunk-6-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11924 bytes
Input file size = 12794 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9803
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9803

Output IDAT size = 9803 bytes (2121 bytes decrease)
Output file size = 9881 bytes (2913 bytes = 22.77% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_files/figure-html/unnamed-chunk-10-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 23494 bytes
Input file size = 24376 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21295
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21295

Output IDAT size = 21295 bytes (2199 bytes decrease)
Output file size = 21373 bytes (3003 bytes = 12.32% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_files/figure-html/unnamed-chunk-16-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8950 bytes
Input file size = 9820 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8292
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8292

Output IDAT size = 8292 bytes (658 bytes decrease)
Output file size = 8370 bytes (1450 bytes = 14.77% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_files/figure-html/unnamed-chunk-18-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 73442 bytes
Input file size = 73616 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61521
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 61521

Output IDAT size = 61521 bytes (11921 bytes decrease)
Output file size = 61599 bytes (12017 bytes = 16.32% decrease)

--- finished re-building ‘cutpointr.Rmd’

--- re-building ‘cutpointr_benchmarks.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_benchmarks_files/figure-html/unnamed-chunk-8-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 62069 bytes
Input file size = 62231 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 50500
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 50500

Output IDAT size = 50500 bytes (11569 bytes decrease)
Output file size = 50578 bytes (11653 bytes = 18.73% decrease)

--- finished re-building ‘cutpointr_benchmarks.Rmd’

--- re-building ‘cutpointr_bootstrapping.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_bootstrapping_files/figure-html/unnamed-chunk-8-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 23679 bytes
Input file size = 24561 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21545
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21545

Output IDAT size = 21545 bytes (2134 bytes decrease)
Output file size = 21623 bytes (2938 bytes = 11.96% decrease)

--- finished re-building ‘cutpointr_bootstrapping.Rmd’

--- re-building ‘cutpointr_estimation.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_estimation_files/figure-html/unnamed-chunk-4-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30112 bytes
Input file size = 30226 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26131
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26131

Output IDAT size = 26131 bytes (3981 bytes decrease)
Output file size = 26209 bytes (4017 bytes = 13.29% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_estimation_files/figure-html/unnamed-chunk-6-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37904 bytes
Input file size = 38030 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31621
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31621

Output IDAT size = 31621 bytes (6283 bytes decrease)
Output file size = 31699 bytes (6331 bytes = 16.65% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_estimation_files/figure-html/unnamed-chunk-7-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 14342 bytes
Input file size = 15212 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12653
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12653

Output IDAT size = 12653 bytes (1689 bytes decrease)
Output file size = 12731 bytes (2481 bytes = 16.31% decrease)


 *** caught segfault ***
address 0x1, cause 'memory not mapped'

Traceback:
 1: stats::smooth.spline(x = roccurve$x.sorted[finite_roc], y = roccurve$m[finite_roc],     w = args[["w"]], spar = args[["spar"]], cv = FALSE, nknots = nknots,     df.offset = args[["df_offset"]], penalty = args[["penalty"]],     control.spar = args[["control_spar"]], tol = 1e-100)
 2: optimize_metric(data = data, x = x, class = class, metric_func = metric_func,     pos_class = pos_class, neg_class = neg_class, minmax = "min",     direction = direction, metric_name = metric_name, w = w,     df = df, spar = spar, nknots = nknots, df_offset = df_offset,     penalty = penalty, control_spar = control_spar, spline = TRUE,     tol_metric = tol_metric, use_midpoints = use_midpoints, ...)
 3: method(data = d, x = predictor, class = outcome, metric_func = metric,     direction = direction, pos_class = pos_class, neg_class = neg_class,     tol_metric = tol_metric, use_midpoints = use_midpoints, boot_stratify = boot_stratify,     ...)
 4: .f(.l[[1L]][[i]], .l[[2L]][[i]], ...)
 5: .Primitive(".Call")(list(name = "pmap_impl", address = <pointer: 0x10176f0>,     dll = list(name = "purrr", path = "/data/gannet/ripley/R/test-dev/purrr/libs/purrr.so",         dynamicLookup = FALSE, handle = <pointer: 0x6ea9460>,         info = <pointer: 0x23c8c70>, forceSymbols = FALSE), numParameters = 8L),     <environment>, "list", FALSE, 2L, NULL, 1L, NULL, 2L)
 6: call_with_cleanup(pmap_impl, environment(), .type, .progress,     n, names, i, call_names, call_n)
 7: withCallingHandlers(expr, error = function(cnd) {    if (i == 0L) {    }    else {        message <- c(i = "In index: {i}.")        if (!is.null(names) && !is.na(names[[i]]) && names[[i]] !=             "") {            name <- names[[i]]            message <- c(message, i = "With name: {name}.")        }        else {            name <- NULL        }        cli::cli_abort(message, location = i, name = name, parent = cnd,             call = error_call, class = "purrr_error_indexed")    }})
 8: with_indexed_errors(i = i, names = names, error_call = .purrr_error_call,     call_with_cleanup(pmap_impl, environment(), .type, .progress,         n, names, i, call_names, call_n))
 9: pmap_("list", .l, .f, ..., .progress = .progress)
10: purrr::pmap(list(dat$subgroup, dat$data), function(g, d) {    if (nrow(d) <= 1)         stop(paste("Subgroup", g, "has <= 1 observations"))    optcut <- tibble::tibble(subgroup = g)    method_result <- method(data = d, x = predictor, class = outcome,         metric_func = metric, direction = direction, pos_class = pos_class,         neg_class = neg_class, tol_metric = tol_metric, use_midpoints = use_midpoints,         boot_stratify = boot_stratify, ...)    method_result <- check_method_cols(method_result)    optcut <- dplyr::bind_cols(optcut, method_result)    if (length(optcut[["optimal_cutpoint"]][[1]]) > 1) {        message("Multiple optimal cutpoints found, applying break_ties.")    }    optcut <- apply_break_ties(optcut, break_ties)    if (!(has_column(optcut, "roc_curve"))) {        roc_curve <- roc(data = d, x = !!predictor, class = !!outcome,             pos_class = pos_class, neg_class = neg_class, direction = direction)        roc_curve <- tibble::tibble(roc_curve = list(roc_curve))        optcut <- dplyr::bind_cols(tibble::as_tibble(roc_curve),             tibble::as_tibble(optcut))    }    else {        check_roc_curve(optcut)    }    if (ncol(optcut) <= 3) {        opt_ind <- get_opt_ind(optcut$roc_curve[[1]], oc = unlist(optcut$optimal_cutpoint),             direction = direction)        m <- metric(tp = optcut$roc_curve[[1]]$tp[opt_ind], fp = optcut$roc_curve[[1]]$fp[opt_ind],             tn = optcut$roc_curve[[1]]$tn[opt_ind], fn = optcut$roc_curve[[1]]$fn[opt_ind],             .roc_curve = optcut$roc_curve[[1]], ...)        m <- check_metric_name(m)        colnames(m) <- make.names(colnames(m))        optcut <- dplyr::bind_cols(optcut, tibble::as_tibble(m))    }    optcut <- check_colnames(optcut)    opt_ind <- get_opt_ind(optcut$roc_curve[[1]], oc = unlist(optcut$optimal_cutpoint),         direction = direction)    m <- metric(tp = optcut$roc_curve[[1]]$tp[opt_ind], fp = optcut$roc_curve[[1]]$fp[opt_ind],         tn = optcut$roc_curve[[1]]$tn[opt_ind], fn = optcut$roc_curve[[1]]$fn[opt_ind],         .roc_curve = optcut$roc_curve[[1]], ...)    optcut <- add_list(optcut, as.numeric(m), optcut$metric_name)    sesp <- sesp_from_oc(optcut$roc_curve[[1]], oc = optcut$optimal_cutpoint,         direction = direction)    optcut <- add_list(optcut, sesp[, "sensitivity"], "sensitivity")    optcut <- add_list(optcut, sesp[, "specificity"], "specificity")    acc <- accuracy_from_oc(optcut$roc_curve[[1]], oc = optcut$optimal_cutpoint[[1]],         direction = direction)[, "accuracy"]    optcut <- add_list(optcut, acc, "acc")    return(optcut)})
11: cutpointr_internal(x, class, subgroup, method, metric, pos_class,     neg_class, direction, boot_runs, boot_stratify, use_midpoints,     break_ties, na.rm, allowParallel, predictor, outcome, mod_name,     subgroup_var, tol_metric, ...)
12: cutpointr.default(suicide, dsi, suicide, gender, method = minimize_spline_metric,     spar = 0.4, metric = misclassification_cost, cost_fp = 1,     cost_fn = 10)
13: cutpointr(suicide, dsi, suicide, gender, method = minimize_spline_metric,     spar = 0.4, metric = misclassification_cost, cost_fp = 1,     cost_fn = 10)
14: eval(expr, envir)
15: eval(expr, envir)
16: withVisible(eval(expr, envir))
17: withCallingHandlers(code, message = function (cnd) {    watcher$capture_plot_and_output()    if (on_message$capture) {        watcher$push(cnd)    }    if (on_message$silence) {        invokeRestart("muffleMessage")    }}, warning = function (cnd) {    if (getOption("warn") >= 2 || getOption("warn") < 0) {        return()    }    watcher$capture_plot_and_output()    if (on_warning$capture) {        cnd <- sanitize_call(cnd)        watcher$push(cnd)    }    if (on_warning$silence) {        invokeRestart("muffleWarning")    }}, error = function (cnd) {    watcher$capture_plot_and_output()    cnd <- sanitize_call(cnd)    watcher$push(cnd)    switch(on_error, continue = invokeRestart("eval_continue"),         stop = invokeRestart("eval_stop"), error = invokeRestart("eval_error",             cnd))})
18: eval(call)
19: eval(call)
20: with_handlers({    for (expr in tle$exprs) {        ev <- withVisible(eval(expr, envir))        watcher$capture_plot_and_output()        watcher$print_value(ev$value, ev$visible, envir)    }    TRUE}, handlers)
21: doWithOneRestart(return(expr), restart)
22: withOneRestart(expr, restarts[[1L]])
23: withRestartList(expr, restarts[-nr])
24: doWithOneRestart(return(expr), restart)
25: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
26: withRestartList(expr, restarts[-nr])
27: doWithOneRestart(return(expr), restart)
28: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
29: withRestartList(expr, restarts)
30: withRestarts(with_handlers({    for (expr in tle$exprs) {        ev <- withVisible(eval(expr, envir))        watcher$capture_plot_and_output()        watcher$print_value(ev$value, ev$visible, envir)    }    TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE,     eval_error = function(cnd) {        signalCondition(cnd)        stop(cnd)    })
31: evaluate::evaluate(...)
32: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options))
33: in_dir(input_dir(), expr)
34: in_input_dir(evaluate(code, envir = env, new_device = FALSE,     keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options)))
35: eng_r(options)
36: block_exec(params)
37: call_block(x)
38: process_group(group)
39: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
40: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)),     function(loc) {        setwd(wd)        write_utf8(res, output %n% stdout())        paste0("\nQuitting from lines ", loc)    }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
41: process_file(text, output)
42: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
43: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     output_dir = getwd(), ...)
44: vweave_rmarkdown(...)
45: engine$weave(file, quiet = quiet, encoding = enc)
46: doTryCatch(return(expr), name, parentenv, handler)
47: tryCatchOne(expr, names, parentenv, handlers[[1L]])
48: tryCatchList(expr, classes, parentenv, handlers)
49: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }}, error = function(e) {    OK <<- FALSE    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
50: tools:::.buildOneVignette("cutpointr_estimation.Rmd", "/data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr",     TRUE, FALSE, "cutpointr_estimation", "UTF-8", "/tmp/RtmpwYN6Lr/working_dir/RtmplFjPbq/file37dd201a981c18.rds")
An irrecoverable exception occurred. R is aborting now ...
--- re-building ‘cutpointr_plotting.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-2-1.png
384x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20797 bytes
Input file size = 20899 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18771
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18771

Output IDAT size = 18771 bytes (2026 bytes decrease)
Output file size = 18849 bytes (2050 bytes = 9.81% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-2-2.png
384x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25202 bytes
Input file size = 25316 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20506
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20506

Output IDAT size = 20506 bytes (4696 bytes decrease)
Output file size = 20584 bytes (4732 bytes = 18.69% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-2-3.png
384x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19983 bytes
Input file size = 20085 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17530
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 17530

Output IDAT size = 17530 bytes (2453 bytes decrease)
Output file size = 17608 bytes (2477 bytes = 12.33% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-2-4.png
384x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19058 bytes
Input file size = 19160 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15236
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15236

Output IDAT size = 15236 bytes (3822 bytes decrease)
Output file size = 15314 bytes (3846 bytes = 20.07% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-2-5.png
384x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29786 bytes
Input file size = 29900 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22864
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22864

Output IDAT size = 22864 bytes (6922 bytes decrease)
Output file size = 22942 bytes (6958 bytes = 23.27% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-2-6.png
384x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17918 bytes
Input file size = 18020 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14671
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14671

Output IDAT size = 14671 bytes (3247 bytes decrease)
Output file size = 14749 bytes (3271 bytes = 18.15% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-3-1.png
384x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20518 bytes
Input file size = 20620 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16158
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16158

Output IDAT size = 16158 bytes (4360 bytes decrease)
Output file size = 16236 bytes (4384 bytes = 21.26% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-4-1.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8423 bytes
Input file size = 9293 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7585
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7585

Output IDAT size = 7585 bytes (838 bytes decrease)
Output file size = 7663 bytes (1630 bytes = 17.54% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-4-2.png
384x288 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5602 bytes
Input file size = 6454 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4728
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4724
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4724

Output IDAT size = 4724 bytes (878 bytes decrease)
Output file size = 4802 bytes (1652 bytes = 25.60% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-4-3.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6813 bytes
Input file size = 7671 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6179
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6179

Output IDAT size = 6179 bytes (634 bytes decrease)
Output file size = 6257 bytes (1414 bytes = 18.43% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_plotting_files/figure-html/unnamed-chunk-5-1.png
384x288 pixels, 8 bits/pixel, 249 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4497 bytes
Input file size = 5334 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3864
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3864

Output IDAT size = 3864 bytes (633 bytes decrease)
Output file size = 3942 bytes (1392 bytes = 26.10% decrease)

--- finished re-building ‘cutpointr_plotting.Rmd’

--- re-building ‘cutpointr_roc.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/cutpointr.Rcheck/vign_test/cutpointr/vignettes/cutpointr_roc_files/figure-html/unnamed-chunk-2-1.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6302 bytes
Input file size = 7160 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5358
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5356
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5356

Output IDAT size = 5356 bytes (946 bytes decrease)
Output file size = 5434 bytes (1726 bytes = 24.11% decrease)

--- finished re-building ‘cutpointr_roc.Rmd’

--- re-building ‘cutpointr_user_functions.Rmd’ using rmarkdown
--- finished re-building ‘cutpointr_user_functions.Rmd’

SUMMARY: processing the following file failed:
  ‘cutpointr_estimation.Rmd’

Error: Vignette re-building failed.
Execution halted