Error(s) in re-building vignettes:
--- re-building ‘A-summarise_clinical_tables_records.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-9-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 78909 bytes
Input file size = 79095 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 77064
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 77064

Output IDAT size = 77064 bytes (1845 bytes decrease)
Output file size = 77142 bytes (1953 bytes = 2.47% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-10-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 73253 bytes
Input file size = 73427 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 72028
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 70873
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 70873

Output IDAT size = 70873 bytes (2380 bytes decrease)
Output file size = 70951 bytes (2476 bytes = 3.37% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-11-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 200214 bytes
Input file size = 200580 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 165549
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 165549

Output IDAT size = 165549 bytes (34665 bytes decrease)
Output file size = 165627 bytes (34953 bytes = 17.43% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-13-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 184993 bytes
Input file size = 185335 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 179961
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 179961

Output IDAT size = 179961 bytes (5032 bytes decrease)
Output file size = 180039 bytes (5296 bytes = 2.86% decrease)

--- finished re-building ‘A-summarise_clinical_tables_records.Rmd’

--- re-building ‘B-summarise_concept_counts.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/B-summarise_concept_counts_files/figure-html/unnamed-chunk-8-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34134 bytes
Input file size = 34260 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31877
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 31028
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 31028

Output IDAT size = 31028 bytes (3106 bytes decrease)
Output file size = 31106 bytes (3154 bytes = 9.21% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/B-summarise_concept_counts_files/figure-html/unnamed-chunk-9-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34134 bytes
Input file size = 34260 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31877
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 31028
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 31028

Output IDAT size = 31028 bytes (3106 bytes decrease)
Output file size = 31106 bytes (3154 bytes = 9.21% decrease)

** Processing: /data/gannet/ripley/R/packages/tests-clang/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/B-summarise_concept_counts_files/figure-html/unnamed-chunk-10-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 67422 bytes
Input file size = 67596 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 59569
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 59569

Output IDAT size = 59569 bytes (7853 bytes decrease)
Output file size = 59647 bytes (7949 bytes = 11.76% decrease)

--- finished re-building ‘B-summarise_concept_counts.Rmd’

Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘C-summarise_pop_characteristics.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB


Quitting from lines 57-60 [unnamed-chunk-3] (C-summarise_pop_characteristics.Rmd)
Error: processing vignette 'C-summarise_pop_characteristics.Rmd' failed with diagnostics:
`variable_name` must not contain NA.
--- failed re-building ‘C-summarise_pop_characteristics.Rmd’

Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following file failed:
  ‘C-summarise_pop_characteristics.Rmd’

Error: Vignette re-building failed.
Execution halted