Running ‘_options.R’ [1s/1s]
  Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK
  Running ‘aaa.R’ [1s/1s]
  Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK
  Running ‘contacts.R’ [8s/11s]
  Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
17c17
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
  Running ‘get_col_row.R’ [1s/1s]
  Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK
  Running ‘mif2.R’ [1s/2s]
  Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK
  Running ‘mif2_intern.R’ [1s/2s]
  Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ... OK
  Running ‘mif2_methods.R’ [1s/2s]
  Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ... OK
  Running ‘panelGompertz.R’ [1s/2s]
  Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...14c14
< name     [,1]      [,2]     [,3]      [,4]     [,5]
---
> variable     [,1]      [,2]     [,3]      [,4]     [,5]
17c17
< name      [,1]     [,2]     [,3]    [,4]     [,5]
---
> variable      [,1]     [,2]     [,3]    [,4]     [,5]
  Running ‘panelGompertzLikelihood.R’ [2s/2s]
  Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ... OK
  Running ‘panelPomp.R’ [2s/3s]
  Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK
  Running ‘panelPomp_methods.R’ [2s/2s]
  Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK
  Running ‘panelRandomWalk.R’ [1s/1s]
  Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...14c14
< name   [,1]     [,2]     [,3]     [,4]     [,5]
---
> variable   [,1]     [,2]     [,3]     [,4]     [,5]
17c17
< name    [,1]       [,2]      [,3]      [,4]      [,5]
---
> variable    [,1]       [,2]      [,3]      [,4]      [,5]
  Running ‘panel_loglik.R’ [1s/1s]
  Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK
  Running ‘params.R’ [1s/2s]
  Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK
  Running ‘pfilter.R’ [2s/3s]
  Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
  Running ‘pfilter_methods.R’ [1s/2s]
  Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK
  Running ‘plot.R’ [1s/2s]
  Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
  Running ‘print-results.R’ [1s/2s]
  Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...26c26
< name       [,1]      [,2]      [,3]      [,4]      [,5]      [,6]
---
> variable       [,1]      [,2]      [,3]      [,4]      [,5]      [,6]
31c31
< name     [,1]     [,2]     [,3]     [,4]     [,5]      [,6]
---
> variable     [,1]     [,2]     [,3]     [,4]     [,5]      [,6]
  Running ‘seeded-results.R’ [2s/2s]
  Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ... OK
  Running ‘simulate.R’ [1s/2s]
  Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...11c11
< name     [,1]     [,2]     [,3]     [,4]      [,5]
---
> variable     [,1]     [,2]     [,3]     [,4]      [,5]