Error(s) in re-building vignettes:
--- re-building ‘A_Honeybee_biology.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Help files with alias or concept or title matching
'simulateHoneybeeGenomes' using fuzzy matching:


SIMplyBee::simulateHoneyBeeGenomes
                        Simulate the Honey bee genome
  Aliases: simulateHoneyBeeGenomes


Type '?PKG::FOO' to inspect entries 'PKG::FOO', or 'TYPE?PKG::FOO' for
entries like 'PKG::FOO-TYPE'.





Quitting from lines 230-232 [cross colony] (A_Honeybee_biology.Rmd)
Error: processing vignette 'A_Honeybee_biology.Rmd' failed with diagnostics:
Length of argument drones should match the number of virgin queens!
--- failed re-building ‘A_Honeybee_biology.Rmd’

--- re-building ‘B_Multiple_colonies.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).

Quitting from lines 151-157 [unnamed-chunk-10] (B_Multiple_colonies.Rmd)
Error: processing vignette 'B_Multiple_colonies.Rmd' failed with diagnostics:
Length of argument drones should match the number of virgin queens!
--- failed re-building ‘B_Multiple_colonies.Rmd’

--- re-building ‘C_Colony_events.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).

Quitting from lines 39-53 [create founder genomes and a Colony and Multicolony objects] (C_Colony_events.Rmd)
Error: processing vignette 'C_Colony_events.Rmd' failed with diagnostics:
Length of argument drones should match the number of virgin queens!
--- failed re-building ‘C_Colony_events.Rmd’

--- re-building ‘D_Crossing.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).

Quitting from lines 123-126 [unnamed-chunk-6] (D_Crossing.Rmd)
Error: processing vignette 'D_Crossing.Rmd' failed with diagnostics:
Length of argument drones should match the number of virgin queens!
--- failed re-building ‘D_Crossing.Rmd’

--- re-building ‘E_Genomics.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).

Quitting from lines 35-46 [load package] (E_Genomics.Rmd)
Error: processing vignette 'E_Genomics.Rmd' failed with diagnostics:
Length of argument drones should match the number of virgin queens!
--- failed re-building ‘E_Genomics.Rmd’

--- re-building ‘G_Sampling_functions.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 20 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
** Processing: /data/gannet/ripley/R/packages/tests-clang/SIMplyBee.Rcheck/vign_test/SIMplyBee/vignettes/G_Sampling_functions_files/figure-html/unnamed-chunk-3-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6609 bytes
Input file size = 7467 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5992
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5992

Output IDAT size = 5992 bytes (617 bytes decrease)
Output file size = 6070 bytes (1397 bytes = 18.71% decrease)


Quitting from lines 82-84 [unnamed-chunk-4] (G_Sampling_functions.Rmd)
Error: processing vignette 'G_Sampling_functions.Rmd' failed with diagnostics:
Length of argument drones should match the number of virgin queens!
--- failed re-building ‘G_Sampling_functions.Rmd’

--- re-building ‘Z_FAQ.Rmd’ using rmarkdown

Quitting from lines 47-76 [drones_not_removed] (Z_FAQ.Rmd)
Error: processing vignette 'Z_FAQ.Rmd' failed with diagnostics:
Length of argument drones should match the number of virgin queens!
--- failed re-building ‘Z_FAQ.Rmd’

SUMMARY: processing the following files failed:
  ‘A_Honeybee_biology.Rmd’ ‘B_Multiple_colonies.Rmd’
  ‘C_Colony_events.Rmd’ ‘D_Crossing.Rmd’ ‘E_Genomics.Rmd’
  ‘G_Sampling_functions.Rmd’ ‘Z_FAQ.Rmd’

Error: Vignette re-building failed.
Execution halted