Error(s) in re-building vignettes:
  ...
--- re-building ‘Plotting-tools.Rmd’ using rmarkdown_notangle
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 127347 bytes
Input file size = 127605 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 102911
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 102911

Output IDAT size = 102911 bytes (24436 bytes decrease)
Output file size = 102989 bytes (24616 bytes = 19.29% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-3-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 129052 bytes
Input file size = 129310 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 103405
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 103405

Output IDAT size = 103405 bytes (25647 bytes decrease)
Output file size = 103483 bytes (25827 bytes = 19.97% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 127347 bytes
Input file size = 127605 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 102911
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 102911

Output IDAT size = 102911 bytes (24436 bytes decrease)
Output file size = 102989 bytes (24616 bytes = 19.29% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-4-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 125715 bytes
Input file size = 125973 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 101651
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 101651

Output IDAT size = 101651 bytes (24064 bytes decrease)
Output file size = 101729 bytes (24244 bytes = 19.25% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 105846 bytes
Input file size = 106068 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 87795
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 87795

Output IDAT size = 87795 bytes (18051 bytes decrease)
Output file size = 87873 bytes (18195 bytes = 17.15% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-5-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 105668 bytes
Input file size = 105890 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 87094
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 87094

Output IDAT size = 87094 bytes (18574 bytes decrease)
Output file size = 87172 bytes (18718 bytes = 17.68% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43744 bytes
Input file size = 43882 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40175
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 39570
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 39570

Output IDAT size = 39570 bytes (4174 bytes decrease)
Output file size = 39648 bytes (4234 bytes = 9.65% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-7-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 110106 bytes
Input file size = 110340 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 89586
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 89586

Output IDAT size = 89586 bytes (20520 bytes decrease)
Output file size = 89664 bytes (20676 bytes = 18.74% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29201 bytes
Input file size = 29315 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 28914
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 26217
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 26217

Output IDAT size = 26217 bytes (2984 bytes decrease)
Output file size = 26295 bytes (3020 bytes = 10.30% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-8-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 110303 bytes
Input file size = 110537 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 89519
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 89519

Output IDAT size = 89519 bytes (20784 bytes decrease)
Output file size = 89597 bytes (20940 bytes = 18.94% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-1.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 193926 bytes
Input file size = 194280 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 147677
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 147677

Output IDAT size = 147677 bytes (46249 bytes decrease)
Output file size = 147755 bytes (46525 bytes = 23.95% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-10-2.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 218772 bytes
Input file size = 219162 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 166257
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 166257

Output IDAT size = 166257 bytes (52515 bytes decrease)
Output file size = 166335 bytes (52827 bytes = 24.10% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-1.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 129616 bytes
Input file size = 129874 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 102537
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 102537

Output IDAT size = 102537 bytes (27079 bytes decrease)
Output file size = 102615 bytes (27259 bytes = 20.99% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-2.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 143796 bytes
Input file size = 144078 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 110872
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 110872

Output IDAT size = 110872 bytes (32924 bytes decrease)
Output file size = 110950 bytes (33128 bytes = 22.99% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-3.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 145636 bytes
Input file size = 145918 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 106122
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 106122

Output IDAT size = 106122 bytes (39514 bytes decrease)
Output file size = 106200 bytes (39718 bytes = 27.22% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-12-4.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 95806 bytes
Input file size = 96016 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 75651
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 75651

Output IDAT size = 75651 bytes (20155 bytes decrease)
Output file size = 75729 bytes (20287 bytes = 21.13% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 68253 bytes
Input file size = 68427 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 50625
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 50625

Output IDAT size = 50625 bytes (17628 bytes decrease)
Output file size = 50703 bytes (17724 bytes = 25.90% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 270156 bytes
Input file size = 270618 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 235100
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 235100

Output IDAT size = 235100 bytes (35056 bytes decrease)
Output file size = 235178 bytes (35440 bytes = 13.10% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-14-3.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 69835 bytes
Input file size = 70009 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52235
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52235

Output IDAT size = 52235 bytes (17600 bytes decrease)
Output file size = 52313 bytes (17696 bytes = 25.28% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 195906 bytes
Input file size = 196260 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 137647
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 137647

Output IDAT size = 137647 bytes (58259 bytes decrease)
Output file size = 137725 bytes (58535 bytes = 29.83% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-16-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 234300 bytes
Input file size = 234714 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 170685
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 170685

Output IDAT size = 170685 bytes (63615 bytes decrease)
Output file size = 170763 bytes (63951 bytes = 27.25% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-18-1.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41508 bytes
Input file size = 41646 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 39895
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 38947
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 38947

Output IDAT size = 38947 bytes (2561 bytes decrease)
Output file size = 39025 bytes (2621 bytes = 6.29% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 139237 bytes
Input file size = 139507 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 102395
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 102395

Output IDAT size = 102395 bytes (36842 bytes decrease)
Output file size = 102473 bytes (37034 bytes = 26.55% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-19-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 105694 bytes
Input file size = 105916 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 79977
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 79977

Output IDAT size = 79977 bytes (25717 bytes decrease)
Output file size = 80055 bytes (25861 bytes = 24.42% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-21-1.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37589 bytes
Input file size = 37715 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 36331
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 35237
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 35237

Output IDAT size = 35237 bytes (2352 bytes decrease)
Output file size = 35315 bytes (2400 bytes = 6.36% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 136333 bytes
Input file size = 136603 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 101426
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 101426

Output IDAT size = 101426 bytes (34907 bytes decrease)
Output file size = 101504 bytes (35099 bytes = 25.69% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-22-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 111248 bytes
Input file size = 111482 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 82070
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 82070

Output IDAT size = 82070 bytes (29178 bytes decrease)
Output file size = 82148 bytes (29334 bytes = 26.31% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 124900 bytes
Input file size = 125158 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 96205
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 96205

Output IDAT size = 96205 bytes (28695 bytes decrease)
Output file size = 96283 bytes (28875 bytes = 23.07% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-2.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 179550 bytes
Input file size = 179880 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 127425
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 127425

Output IDAT size = 127425 bytes (52125 bytes decrease)
Output file size = 127503 bytes (52377 bytes = 29.12% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-3.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 119620 bytes
Input file size = 119866 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 88365
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 88365

Output IDAT size = 88365 bytes (31255 bytes decrease)
Output file size = 88443 bytes (31423 bytes = 26.22% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Plotting-tools_files/figure-html/unnamed-chunk-24-4.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 195718 bytes
Input file size = 196072 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 153851
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 153851

Output IDAT size = 153851 bytes (41867 bytes decrease)
Output file size = 153929 bytes (42143 bytes = 21.49% decrease)

--- finished re-building ‘Plotting-tools.Rmd’

--- re-building ‘RRphylo.Rmd’ using rmarkdown_notangle
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-4-1.png
880x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13870 bytes
Input file size = 13960 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12106
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12106

Output IDAT size = 12106 bytes (1764 bytes decrease)
Output file size = 12184 bytes (1776 bytes = 12.72% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-5-1.png
880x880 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 23594 bytes
Input file size = 24476 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20999
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 20658
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 20658

Output IDAT size = 20658 bytes (2936 bytes decrease)
Output file size = 20736 bytes (3740 bytes = 15.28% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-6-1.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 138070 bytes
Input file size = 138340 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 113807
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 113807

Output IDAT size = 113807 bytes (24263 bytes decrease)
Output file size = 113885 bytes (24455 bytes = 17.68% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-7-1.png
1760x880 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 57094 bytes
Input file size = 58024 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 51984
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 51534
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 51534

Output IDAT size = 51534 bytes (5560 bytes decrease)
Output file size = 51612 bytes (6412 bytes = 11.05% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-8-1.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 247821 bytes
Input file size = 248259 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 169441
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 169441

Output IDAT size = 169441 bytes (78380 bytes decrease)
Output file size = 169519 bytes (78740 bytes = 31.72% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-9-1.png
880x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13870 bytes
Input file size = 13960 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12106
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12106

Output IDAT size = 12106 bytes (1764 bytes decrease)
Output file size = 12184 bytes (1776 bytes = 12.72% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-1.png
660x660 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18043 bytes
Input file size = 18145 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14940
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14940

Output IDAT size = 14940 bytes (3103 bytes decrease)
Output file size = 15018 bytes (3127 bytes = 17.23% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-10-2.png
660x660 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23603 bytes
Input file size = 23705 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19755
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19755

Output IDAT size = 19755 bytes (3848 bytes decrease)
Output file size = 19833 bytes (3872 bytes = 16.33% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/RRphylo_files/figure-html/unnamed-chunk-11-1.png
1760x1540 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 56108 bytes
Input file size = 56258 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52420
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5		IDAT size = 52083

Selecting parameters:
  zc = 9  zm = 8  zs = 3  f = 5		IDAT size = 52083

Output IDAT size = 52083 bytes (4025 bytes decrease)
Output file size = 52161 bytes (4097 bytes = 7.28% decrease)

--- finished re-building ‘RRphylo.Rmd’

--- re-building ‘Tree-Manipulation.Rmd’ using rmarkdown_notangle
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-2-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 67692 bytes
Input file size = 67866 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57135
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 57135

Output IDAT size = 57135 bytes (10557 bytes decrease)
Output file size = 57213 bytes (10653 bytes = 15.70% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-3-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 100843 bytes
Input file size = 101065 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 81794
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 81794

Output IDAT size = 81794 bytes (19049 bytes decrease)
Output file size = 81872 bytes (19193 bytes = 18.99% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-5-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 103844 bytes
Input file size = 104066 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 85098
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 85098

Output IDAT size = 85098 bytes (18746 bytes decrease)
Output file size = 85176 bytes (18890 bytes = 18.15% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-6-1.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 107411 bytes
Input file size = 107645 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94233
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 94233

Output IDAT size = 94233 bytes (13178 bytes decrease)
Output file size = 94311 bytes (13334 bytes = 12.39% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-7-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 93275 bytes
Input file size = 93485 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 75215
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 75215

Output IDAT size = 75215 bytes (18060 bytes decrease)
Output file size = 75293 bytes (18192 bytes = 19.46% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-8-1.png
1320x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 49585 bytes
Input file size = 49735 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 43100
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 43061
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 43061

Output IDAT size = 43061 bytes (6524 bytes decrease)
Output file size = 43139 bytes (6596 bytes = 13.26% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-10-1.png
1200x1200 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54545 bytes
Input file size = 54695 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45645
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45645

Output IDAT size = 45645 bytes (8900 bytes decrease)
Output file size = 45723 bytes (8972 bytes = 16.40% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-11-1.png
1200x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28014 bytes
Input file size = 28128 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22988
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 22988

Output IDAT size = 22988 bytes (5026 bytes decrease)
Output file size = 23066 bytes (5062 bytes = 18.00% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-1.png
1200x600 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 19899 bytes
Input file size = 20781 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16628
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16628

Output IDAT size = 16628 bytes (3271 bytes decrease)
Output file size = 16706 bytes (4075 bytes = 19.61% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-2.png
1200x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29359 bytes
Input file size = 29473 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24575
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24575

Output IDAT size = 24575 bytes (4784 bytes decrease)
Output file size = 24653 bytes (4820 bytes = 16.35% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-12-3.png
1200x600 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21781 bytes
Input file size = 22663 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18212
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18212

Output IDAT size = 18212 bytes (3569 bytes decrease)
Output file size = 18290 bytes (4373 bytes = 19.30% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-13-1.png
1200x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28928 bytes
Input file size = 29042 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24231
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24231

Output IDAT size = 24231 bytes (4697 bytes decrease)
Output file size = 24309 bytes (4733 bytes = 16.30% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-15-1.png
1200x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37097 bytes
Input file size = 37223 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31700
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31700

Output IDAT size = 31700 bytes (5397 bytes decrease)
Output file size = 31778 bytes (5445 bytes = 14.63% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-17-1.png
1200x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33975 bytes
Input file size = 34101 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29419
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29419

Output IDAT size = 29419 bytes (4556 bytes decrease)
Output file size = 29497 bytes (4604 bytes = 13.50% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-1.png
1320x660 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28239 bytes
Input file size = 28353 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23316
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23316

Output IDAT size = 23316 bytes (4923 bytes decrease)
Output file size = 23394 bytes (4959 bytes = 17.49% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-2.png
1320x660 pixels, 8 bits/pixel, 200 colors in palette
Input IDAT size = 15132 bytes
Input file size = 15834 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12398
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12388
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 12388

Output IDAT size = 12388 bytes (2744 bytes decrease)
Output file size = 13078 bytes (2756 bytes = 17.41% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/Tree-Manipulation_files/figure-html/unnamed-chunk-18-3.png
1320x660 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28098 bytes
Input file size = 28212 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23759
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23759

Output IDAT size = 23759 bytes (4339 bytes decrease)
Output file size = 23837 bytes (4375 bytes = 15.51% decrease)

--- finished re-building ‘Tree-Manipulation.Rmd’

--- re-building ‘overfitRR.Rmd’ using rmarkdown_notangle
--- finished re-building ‘overfitRR.Rmd’

--- re-building ‘search.conv.Rmd’ using rmarkdown_notangle

Quitting from lines 229-306 [noconv] (search.conv.Rmd)
Error: processing vignette 'search.conv.Rmd' failed with diagnostics:
could not find function "mvSIM"
--- failed re-building ‘search.conv.Rmd’

--- re-building ‘search.shift.Rmd’ using rmarkdown_notangle
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-2-1.png
880x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38295 bytes
Input file size = 38421 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30597
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 30597

Output IDAT size = 30597 bytes (7698 bytes decrease)
Output file size = 30675 bytes (7746 bytes = 20.16% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.shift_files/figure-html/unnamed-chunk-6-1.png
1540x1320 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 532464 bytes
Input file size = 533310 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 389767
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 389767

Output IDAT size = 389767 bytes (142697 bytes decrease)
Output file size = 389845 bytes (143465 bytes = 26.90% decrease)

--- finished re-building ‘search.shift.Rmd’

--- re-building ‘search.trend.Rmd’ using rmarkdown_notangle
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-2-1.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 251007 bytes
Input file size = 251445 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 197330
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 197330

Output IDAT size = 197330 bytes (53677 bytes decrease)
Output file size = 197408 bytes (54037 bytes = 21.49% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-5-1.png
1760x880 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 339658 bytes
Input file size = 340228 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 241740
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 241740

Output IDAT size = 241740 bytes (97918 bytes decrease)
Output file size = 241818 bytes (98410 bytes = 28.92% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/search.trend_files/figure-html/unnamed-chunk-9-1.png
1760x1540 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51264 bytes
Input file size = 51414 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 49185
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 49171
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5		IDAT size = 47721

Selecting parameters:
  zc = 9  zm = 8  zs = 3  f = 5		IDAT size = 47721

Output IDAT size = 47721 bytes (3543 bytes decrease)
Output file size = 47799 bytes (3615 bytes = 7.03% decrease)

--- finished re-building ‘search.trend.Rmd’

--- re-building ‘swapONE.Rmd’ using rmarkdown_notangle
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-2-1.png
1200x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25941 bytes
Input file size = 26055 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23260
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23260

Output IDAT size = 23260 bytes (2681 bytes decrease)
Output file size = 23338 bytes (2717 bytes = 10.43% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/RRphylo.Rcheck/vign_test/RRphylo/vignettes/swapONE_files/figure-html/unnamed-chunk-3-1.png
1200x600 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28446 bytes
Input file size = 28560 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24784
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24784

Output IDAT size = 24784 bytes (3662 bytes decrease)
Output file size = 24862 bytes (3698 bytes = 12.95% decrease)

--- finished re-building ‘swapONE.Rmd’

SUMMARY: processing the following file failed:
  ‘search.conv.Rmd’

Error: Vignette re-building failed.
Execution halted