Error(s) in re-building vignettes:
  ...
--- re-building ‘basic-dutils.Rmd’ using rmarkdown
--- finished re-building ‘basic-dutils.Rmd’

--- re-building ‘binomial-family.Rmd’ using rmarkdown
--- finished re-building ‘binomial-family.Rmd’

--- re-building ‘binomial-twin.Rmd’ using rmarkdown
--- finished re-building ‘binomial-twin.Rmd’

--- re-building ‘binreg-TRS.rmd’ using rmarkdown
--- finished re-building ‘binreg-TRS.rmd’

--- re-building ‘binreg-ate.Rmd’ using rmarkdown
--- finished re-building ‘binreg-ate.Rmd’

--- re-building ‘binreg.Rmd’ using rmarkdown
--- finished re-building ‘binreg.Rmd’

--- re-building ‘cifreg.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29464 bytes
Input file size = 29578 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24398
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24398

Output IDAT size = 24398 bytes (5066 bytes decrease)
Output file size = 24476 bytes (5102 bytes = 17.25% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-4-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17177 bytes
Input file size = 17279 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13514
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13514

Output IDAT size = 13514 bytes (3663 bytes decrease)
Output file size = 13592 bytes (3687 bytes = 21.34% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-5-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17762 bytes
Input file size = 17864 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14313
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14313

Output IDAT size = 14313 bytes (3449 bytes decrease)
Output file size = 14391 bytes (3473 bytes = 19.44% decrease)

--- finished re-building ‘cifreg.Rmd’

--- re-building ‘glm-utility.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/glm-utility_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26142 bytes
Input file size = 26256 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21135
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21135

Output IDAT size = 21135 bytes (5007 bytes decrease)
Output file size = 21213 bytes (5043 bytes = 19.21% decrease)

--- finished re-building ‘glm-utility.Rmd’

--- re-building ‘haplo-discrete-ttp.Rmd’ using rmarkdown
--- finished re-building ‘haplo-discrete-ttp.Rmd’

--- re-building ‘interval-discrete-survival.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/interval-discrete-survival_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 8 bits/pixel, 253 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5459 bytes
Input file size = 6308 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4417
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4417

Output IDAT size = 4417 bytes (1042 bytes decrease)
Output file size = 4495 bytes (1813 bytes = 28.74% decrease)

--- finished re-building ‘interval-discrete-survival.Rmd’

--- re-building ‘marginal-cox.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-5-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9374 bytes
Input file size = 9464 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7026
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7026

Output IDAT size = 7026 bytes (2348 bytes decrease)
Output file size = 7104 bytes (2360 bytes = 24.94% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-6-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11740 bytes
Input file size = 11830 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8587
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 8587

Output IDAT size = 8587 bytes (3153 bytes decrease)
Output file size = 8665 bytes (3165 bytes = 26.75% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-9-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60657 bytes
Input file size = 60819 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 53824
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 53824

Output IDAT size = 53824 bytes (6833 bytes decrease)
Output file size = 53902 bytes (6917 bytes = 11.37% decrease)

--- finished re-building ‘marginal-cox.Rmd’

--- re-building ‘mediation-survival.Rmd’ using rmarkdown
--- finished re-building ‘mediation-survival.Rmd’

--- re-building ‘quantitative-twin.Rmd’ using rmarkdown

Quitting from lines 82-108 [scatterdens] (quantitative-twin.Rmd)
Error: processing vignette 'quantitative-twin.Rmd' failed with diagnostics:
there is no package called 'cowplot'
--- failed re-building ‘quantitative-twin.Rmd’

--- re-building ‘recurrent-events.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-4-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14712 bytes
Input file size = 14802 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11850
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11850

Output IDAT size = 11850 bytes (2862 bytes decrease)
Output file size = 11928 bytes (2874 bytes = 19.42% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-6-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18914 bytes
Input file size = 19016 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15347
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15347

Output IDAT size = 15347 bytes (3567 bytes decrease)
Output file size = 15425 bytes (3591 bytes = 18.88% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-7-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15318 bytes
Input file size = 15408 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12587
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12587

Output IDAT size = 12587 bytes (2731 bytes decrease)
Output file size = 12665 bytes (2743 bytes = 17.80% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-8-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9154 bytes
Input file size = 9244 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7272
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7272

Output IDAT size = 7272 bytes (1882 bytes decrease)
Output file size = 7350 bytes (1894 bytes = 20.49% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-10-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11863 bytes
Input file size = 11953 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9285
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9285

Output IDAT size = 9285 bytes (2578 bytes decrease)
Output file size = 9363 bytes (2590 bytes = 21.67% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-13-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11802 bytes
Input file size = 11892 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9143
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9143

Output IDAT size = 9143 bytes (2659 bytes decrease)
Output file size = 9221 bytes (2671 bytes = 22.46% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-18-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11255 bytes
Input file size = 11345 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9124
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9124

Output IDAT size = 9124 bytes (2131 bytes decrease)
Output file size = 9202 bytes (2143 bytes = 18.89% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-19-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14036 bytes
Input file size = 14126 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9564
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9564

Output IDAT size = 9564 bytes (4472 bytes decrease)
Output file size = 9642 bytes (4484 bytes = 31.74% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-20-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8397 bytes
Input file size = 8487 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6690
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6690

Output IDAT size = 6690 bytes (1707 bytes decrease)
Output file size = 6768 bytes (1719 bytes = 20.25% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-21-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26665 bytes
Input file size = 26779 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18946
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 18946

Output IDAT size = 18946 bytes (7719 bytes decrease)
Output file size = 19024 bytes (7755 bytes = 28.96% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-22-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19228 bytes
Input file size = 19330 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15437
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15437

Output IDAT size = 15437 bytes (3791 bytes decrease)
Output file size = 15515 bytes (3815 bytes = 19.74% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-24-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12177 bytes
Input file size = 12267 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9084
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9084

Output IDAT size = 9084 bytes (3093 bytes decrease)
Output file size = 9162 bytes (3105 bytes = 25.31% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-25-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19559 bytes
Input file size = 19661 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16223
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16223

Output IDAT size = 16223 bytes (3336 bytes decrease)
Output file size = 16301 bytes (3360 bytes = 17.09% decrease)

--- finished re-building ‘recurrent-events.Rmd’

--- re-building ‘rmst-ate.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/rmst-ate_files/figure-html/unnamed-chunk-2-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54327 bytes
Input file size = 54477 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46863
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 46863

Output IDAT size = 46863 bytes (7464 bytes decrease)
Output file size = 46941 bytes (7536 bytes = 13.83% decrease)

--- finished re-building ‘rmst-ate.Rmd’

--- re-building ‘survival-ate.Rmd’ using rmarkdown
--- finished re-building ‘survival-ate.Rmd’

--- re-building ‘time-to-event-family-studies-arev.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/survival-marginal-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13873 bytes
Input file size = 13963 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10313
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10313

Output IDAT size = 10313 bytes (3560 bytes decrease)
Output file size = 10391 bytes (3572 bytes = 25.58% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14731 bytes
Input file size = 14821 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11198
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11198

Output IDAT size = 11198 bytes (3533 bytes decrease)
Output file size = 11276 bytes (3545 bytes = 23.92% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-9-1.png
357x275 pixels, 8 bits/pixel, 251 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5480 bytes
Input file size = 6323 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4899
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4899

Output IDAT size = 4899 bytes (581 bytes decrease)
Output file size = 4977 bytes (1346 bytes = 21.29% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance2-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16107 bytes
Input file size = 16197 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12228
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 12228

Output IDAT size = 12228 bytes (3879 bytes decrease)
Output file size = 12306 bytes (3891 bytes = 24.02% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance3-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17124 bytes
Input file size = 17226 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13176
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13176

Output IDAT size = 13176 bytes (3948 bytes decrease)
Output file size = 13254 bytes (3972 bytes = 23.06% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-17-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8823 bytes
Input file size = 8913 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6840
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6840

Output IDAT size = 6840 bytes (1983 bytes decrease)
Output file size = 6918 bytes (1995 bytes = 22.38% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/biprobittime1-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12345 bytes
Input file size = 12435 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9611
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9611

Output IDAT size = 9611 bytes (2734 bytes decrease)
Output file size = 9689 bytes (2746 bytes = 22.08% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8475 bytes
Input file size = 8565 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6389
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6389

Output IDAT size = 6389 bytes (2086 bytes decrease)
Output file size = 6467 bytes (2098 bytes = 24.50% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-2.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8820 bytes
Input file size = 8910 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6792
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6792

Output IDAT size = 6792 bytes (2028 bytes decrease)
Output file size = 6870 bytes (2040 bytes = 22.90% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-3.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8623 bytes
Input file size = 8713 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6395
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 6395

Output IDAT size = 6395 bytes (2228 bytes decrease)
Output file size = 6473 bytes (2240 bytes = 25.71% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-4.png
357x275 pixels, 8 bits/pixel, 213 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2385 bytes
Input file size = 3114 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1993
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1993

Output IDAT size = 1993 bytes (392 bytes decrease)
Output file size = 2071 bytes (1043 bytes = 33.49% decrease)

--- finished re-building ‘time-to-event-family-studies-arev.Rmd’

--- re-building ‘twostage-survival.Rmd’ using rmarkdown
--- finished re-building ‘twostage-survival.Rmd’

SUMMARY: processing the following file failed:
  ‘quantitative-twin.Rmd’

Error: Vignette re-building failed.
Execution halted