Error(s) in re-building vignettes:
--- re-building ‘daiquiri.Rmd’ using rmarkdown
** Processing: /tmp/RtmpJ7JhrM/working_dir/RtmpEQ5DPn/example_prescriptions_report_files/figure-html/daiquiri-overview-presence-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 91593 bytes
Input file size = 91803 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 76780
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 76780

Output IDAT size = 76780 bytes (14813 bytes decrease)
Output file size = 76858 bytes (14945 bytes = 16.28% decrease)

** Processing: /tmp/RtmpJ7JhrM/working_dir/RtmpEQ5DPn/example_prescriptions_report_files/figure-html/daiquiri-overview-missing-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 77117 bytes
Input file size = 77303 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 62361
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 62361

Output IDAT size = 62361 bytes (14756 bytes decrease)
Output file size = 62439 bytes (14864 bytes = 19.23% decrease)

** Processing: /tmp/RtmpJ7JhrM/working_dir/RtmpEQ5DPn/example_prescriptions_report_files/figure-html/daiquiri-overview-nonconformant-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 59968 bytes
Input file size = 60130 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45943
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45943

Output IDAT size = 45943 bytes (14025 bytes decrease)
Output file size = 46021 bytes (14109 bytes = 23.46% decrease)


 *** caught bus error ***
address 0x7f72a2ffa765, cause 'non-existent physical address'

Traceback:
 1: dev.off(dv)
 2: eng_r(options)
 3: block_exec(params)
 4: call_block(x)
 5: process_group(group)
 6: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
 7: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)),     function(e, loc) {        setwd(wd)        write_utf8(res, output %n% stdout())        paste0("\nQuitting from lines ", loc)    }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
 8: process_file(text, output)
 9: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10: rmarkdown::render(input = file.path(temp_dirname, "report_htmldoc.Rmd"),     output_file = paste0(save_filename, ".html"), output_dir = save_directory,     params = list(source_data = source_data, aggregated_data = aggregated_data,         report_title = report_title), quiet = !show_progress,     ...)
11: report_data(source_data, aggregated_data, report_title = report_title,     save_directory = save_directory, save_filename = save_filename,     show_progress = show_progress)
12: daiquiri_report(df = example_prescriptions, field_types = fts,     override_column_names = FALSE, na = c("", "NULL"), dataset_description = "Example prescription data",     aggregation_timeunit = "day", report_title = "daiquiri data quality report",     save_directory = tempdir(), save_filename = "example_prescriptions_report",     show_progress = FALSE, log_directory = NULL)
13: eval(expr, envir, enclos)
14: eval(expr, envir, enclos)
15: eval_with_user_handlers(expr, envir, enclos, user_handlers)
16: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers))
17: withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)
18: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler))
19: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)))
20: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,     debug = debug, last = i == length(out), use_try = stop_on_error !=         2L, keep_warning = keep_warning, keep_message = keep_message,     log_echo = log_echo, log_warning = log_warning, output_handler = output_handler,     include_timing = include_timing)
21: evaluate::evaluate(...)
22: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options))
23: in_dir(input_dir(), expr)
24: in_input_dir(evaluate(code, envir = env, new_device = FALSE,     keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options)))
25: eng_r(options)
26: block_exec(params)
27: call_block(x)
28: process_group(group)
29: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
30: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)),     function(e, loc) {        setwd(wd)        write_utf8(res, output %n% stdout())        paste0("\nQuitting from lines ", loc)    }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
31: process_file(text, output)
32: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
33: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     output_dir = getwd(), ...)
34: vweave_rmarkdown(...)
35: engine$weave(file, quiet = quiet, encoding = enc)
36: doTryCatch(return(expr), name, parentenv, handler)
37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
38: tryCatchList(expr, classes, parentenv, handlers)
39: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
40: tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/daiquiri.Rcheck/vign_test/daiquiri",     skip = TRUE, ser_elibs = "/tmp/RtmpJ7JhrM/filec4ae276525b61.rds")
An irrecoverable exception occurred. R is aborting now ...