Error(s) in re-building vignettes:
  ...
--- re-building ‘Differential-Synth.Rmd’ using rmarkdown

Quitting from lines  at lines 29-42 [setup] (Differential-Synth.Rmd)
Error: processing vignette 'Differential-Synth.Rmd' failed with diagnostics:
there is no package called 'DESeq2'
--- failed re-building ‘Differential-Synth.Rmd’

--- re-building ‘Dropout.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Dropout_files/figure-html/unnamed-chunk-4-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 53610 bytes
Input file size = 53760 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40776
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 40776

Output IDAT size = 40776 bytes (12834 bytes decrease)
Output file size = 40854 bytes (12906 bytes = 24.01% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Dropout_files/figure-html/unnamed-chunk-5-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31753 bytes
Input file size = 31867 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24957
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24957

Output IDAT size = 24957 bytes (6796 bytes decrease)
Output file size = 25035 bytes (6832 bytes = 21.44% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Dropout_files/figure-html/unnamed-chunk-6-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32981 bytes
Input file size = 33107 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25871
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25871

Output IDAT size = 25871 bytes (7110 bytes decrease)
Output file size = 25949 bytes (7158 bytes = 21.62% decrease)

--- finished re-building ‘Dropout.Rmd’

--- re-building ‘Getting-Started.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Getting-Started_files/figure-html/unnamed-chunk-11-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37454 bytes
Input file size = 37580 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29364
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 29364

Output IDAT size = 29364 bytes (8090 bytes decrease)
Output file size = 29442 bytes (8138 bytes = 21.66% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Getting-Started_files/figure-html/unnamed-chunk-13-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37509 bytes
Input file size = 37635 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26365
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26365

Output IDAT size = 26365 bytes (11144 bytes decrease)
Output file size = 26443 bytes (11192 bytes = 29.74% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Getting-Started_files/figure-html/unnamed-chunk-14-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27198 bytes
Input file size = 27312 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20601
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20601

Output IDAT size = 20601 bytes (6597 bytes decrease)
Output file size = 20679 bytes (6633 bytes = 24.29% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Getting-Started_files/figure-html/unnamed-chunk-15-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14068 bytes
Input file size = 14158 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11989
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11989

Output IDAT size = 11989 bytes (2079 bytes decrease)
Output file size = 12067 bytes (2091 bytes = 14.77% decrease)

--- finished re-building ‘Getting-Started.Rmd’

--- re-building ‘NSS.Rmd’ using rmarkdown

Quitting from lines  at lines 32-46 [setup] (NSS.Rmd)
Error: processing vignette 'NSS.Rmd' failed with diagnostics:
there is no package called 'DESeq2'
--- failed re-building ‘NSS.Rmd’

--- re-building ‘Troubleshooting.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Troubleshooting_files/figure-html/unnamed-chunk-3-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17817 bytes
Input file size = 17919 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15152
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15152

Output IDAT size = 15152 bytes (2665 bytes decrease)
Output file size = 15230 bytes (2689 bytes = 15.01% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Troubleshooting_files/figure-html/unnamed-chunk-4-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18092 bytes
Input file size = 18194 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15926
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 15926

Output IDAT size = 15926 bytes (2166 bytes decrease)
Output file size = 16004 bytes (2190 bytes = 12.04% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Troubleshooting_files/figure-html/unnamed-chunk-5-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31756 bytes
Input file size = 31870 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27835
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27835

Output IDAT size = 27835 bytes (3921 bytes decrease)
Output file size = 27913 bytes (3957 bytes = 12.42% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Troubleshooting_files/figure-html/unnamed-chunk-6-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66756 bytes
Input file size = 66930 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52782
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52782

Output IDAT size = 52782 bytes (13974 bytes decrease)
Output file size = 52860 bytes (14070 bytes = 21.02% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Troubleshooting_files/figure-html/unnamed-chunk-7-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16982 bytes
Input file size = 17084 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 15988
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 5		IDAT size = 15988

Output IDAT size = 15988 bytes (994 bytes decrease)
Output file size = 16066 bytes (1018 bytes = 5.96% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Troubleshooting_files/figure-html/unnamed-chunk-11-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33892 bytes
Input file size = 34018 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26477
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26477

Output IDAT size = 26477 bytes (7415 bytes decrease)
Output file size = 26555 bytes (7463 bytes = 21.94% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Troubleshooting_files/figure-html/unnamed-chunk-11-2.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30988 bytes
Input file size = 31102 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24166
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 24166

Output IDAT size = 24166 bytes (6822 bytes decrease)
Output file size = 24244 bytes (6858 bytes = 22.05% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/Troubleshooting_files/figure-html/unnamed-chunk-13-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30761 bytes
Input file size = 30875 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23968
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 23968

Output IDAT size = 23968 bytes (6793 bytes decrease)
Output file size = 24046 bytes (6829 bytes = 22.12% decrease)

--- finished re-building ‘Troubleshooting.Rmd’

--- re-building ‘bakR-Fn.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/bakR-Fn_files/figure-html/unnamed-chunk-5-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27969 bytes
Input file size = 28083 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20270
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20270

Output IDAT size = 20270 bytes (7699 bytes decrease)
Output file size = 20348 bytes (7735 bytes = 27.54% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/bakR-Fn_files/figure-html/unnamed-chunk-6-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22866 bytes
Input file size = 22968 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16928
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 16928

Output IDAT size = 16928 bytes (5938 bytes decrease)
Output file size = 17006 bytes (5962 bytes = 25.96% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/bakR-Fn_files/figure-html/unnamed-chunk-7-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15494 bytes
Input file size = 15584 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13000
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13000

Output IDAT size = 13000 bytes (2494 bytes decrease)
Output file size = 13078 bytes (2506 bytes = 16.08% decrease)

--- finished re-building ‘bakR-Fn.Rmd’

--- re-building ‘bakR-Quickstart.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/bakR-Quickstart_files/figure-html/unnamed-chunk-5-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 37547 bytes
Input file size = 37673 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26427
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26427

Output IDAT size = 26427 bytes (11120 bytes decrease)
Output file size = 26505 bytes (11168 bytes = 29.64% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/bakR-Quickstart_files/figure-html/unnamed-chunk-6-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26954 bytes
Input file size = 27068 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20437
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20437

Output IDAT size = 20437 bytes (6517 bytes decrease)
Output file size = 20515 bytes (6553 bytes = 24.21% decrease)

** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/bakR.Rcheck/vign_test/bakR/vignettes/bakR-Quickstart_files/figure-html/unnamed-chunk-7-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13740 bytes
Input file size = 13830 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11814
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 11814

Output IDAT size = 11814 bytes (1926 bytes decrease)
Output file size = 11892 bytes (1938 bytes = 14.01% decrease)

--- finished re-building ‘bakR-Quickstart.Rmd’

SUMMARY: processing the following files failed:
  ‘Differential-Synth.Rmd’ ‘NSS.Rmd’

Error: Vignette re-building failed.
Execution halted