Running 'testthat.R' [20s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(occCite)
  > 
  > test_check("occCite")
  	
   OccCite query occurred on: 2022-08-01
  	
   User query type: User-supplied list of taxa.
  	
   Sources for taxonomic rectification: GBIF Backbone Taxonomy
   	
  	
   Taxonomic cleaning results: 	
  
           Input Name                        Best Match
  1 Protea cynaroides Protea cynaroides (L.) L. L. (L.)
    Taxonomic Databases w/ Matches
  1         GBIF Backbone Taxonomy
  	
   Sources for occurrence data: gbif, bien
   	
                              Species Occurrences Sources
  1 Protea cynaroides (L.) L. L. (L.)        2334      17
  	
   GBIF dataset DOIs: 	
  
                              Species GBIF Access Date           GBIF DOI
  1 Protea cynaroides (L.) L. L. (L.)       2022-03-02 10.15468/dl.ztbx8c
  	
   OccCite query occurred on: 2022-08-01
  	
   User query type: User-supplied list of taxa.
  	
   Sources for taxonomic rectification: GBIF Backbone Taxonomy
   	
  	
   Taxonomic cleaning results: 	
  
           Input Name                        Best Match
  1 Protea cynaroides Protea cynaroides (L.) L. L. (L.)
    Taxonomic Databases w/ Matches
  1         GBIF Backbone Taxonomy
  	
   Sources for occurrence data: gbif
   	
                              Species Occurrences Sources
  1 Protea cynaroides (L.) L. L. (L.)        2189      13
  	
   GBIF dataset DOIs: 	
  
                              Species GBIF Access Date           GBIF DOI
  1 Protea cynaroides (L.) L. L. (L.)       2022-03-02 10.15468/dl.ztbx8c
  	
   OccCite query occurred on: 2022-08-01
  	
   User query type: User-supplied list of taxa.
  	
   Sources for taxonomic rectification: GBIF Backbone Taxonomy
   	
  	
   Taxonomic cleaning results: 	
  
           Input Name                        Best Match
  1 Protea cynaroides Protea cynaroides (L.) L. L. (L.)
    Taxonomic Databases w/ Matches
  1         GBIF Backbone Taxonomy
  	
   Sources for occurrence data: bien
   	
                              Species Occurrences Sources
  1 Protea cynaroides (L.) L. L. (L.)         145       4
  [ FAIL 12 | WARN 4 | SKIP 17 | PASS 169 ]
  
  ══ Skipped tests (17) ══════════════════════════════════════════════════════════
  • On CRAN (16): 'test-GBIFLoginManager.R:6:3', 'test-GBIFLoginManager.R:19:3',
    'test-GBIFtableCleanup.R:6:3', 'test-gbifRetriever.R:6:3',
    'test-gbifRetriever.R:29:3', 'test-getBIENpoints.R:6:3',
    'test-getBIENpoints.R:28:3', 'test-getGBIFpoints.R:6:3',
    'test-getGBIFpoints.R:24:3', 'test-occCitation.R:25:3',
    'test-occCitePrint.R:5:3', 'test-prevGBIFdownload.R:6:3',
    'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:6:3', 'test-tabGBIF.R:24:3',
    'test-tabGBIF.R:51:3'
  • internet connection established (1): 'test-occCitation.R:114:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-occCitation.R:79:3'): outputs for BIEN results are as expected ──
  class(testResults) == "occCiteCitation" is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-occCitation.R:81:3'): outputs for BIEN results are as expected ──
  "occCitationResults" %in% names(testResults) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-occCitation.R:82:3'): outputs for BIEN results are as expected ──
  class(testResults$occCitationResults[[1]]) not equal to "data.frame".
  1/1 mismatches
  x[1]: "NULL"
  y[1]: "data.frame"
  ── Failure ('test-occCitation.R:87:3'): outputs for BIEN results are as expected ──
  "occSearch" %in% names(testResults$occCitationResults[[1]]) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-occCitation.R:89:3'): outputs for BIEN results are as expected ──
  class(testResults$occCitationResults[[1]]$occSearch) not equal to "character".
  1/1 mismatches
  x[1]: "NULL"
  y[1]: "character"
  ── Failure ('test-occCitation.R:93:3'): outputs for BIEN results are as expected ──
  "Dataset Key" %in% names(testResults$occCitationResults[[1]]) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-occCitation.R:95:3'): outputs for BIEN results are as expected ──
  class(testResults$occCitationResults[[1]]$`Dataset Key`) not equal to "character".
  1/1 mismatches
  x[1]: "NULL"
  y[1]: "character"
  ── Failure ('test-occCitation.R:99:3'): outputs for BIEN results are as expected ──
  "Citation" %in% names(testResults$occCitationResults[[1]]) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-occCitation.R:101:3'): outputs for BIEN results are as expected ──
  class(testResults$occCitationResults[[1]]$Citation) not equal to "character".
  1/1 mismatches
  x[1]: "NULL"
  y[1]: "character"
  ── Failure ('test-occCitation.R:105:3'): outputs for BIEN results are as expected ──
  "Accession Date" %in% names(testResults$occCitationResults[[1]]) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-occCitation.R:108:3'): outputs for BIEN results are as expected ──
  "Number of Occurrences" %in% names(testResults$occCitationResults[[1]]) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-occCitation.R:110:3'): outputs for BIEN results are as expected ──
  is.numeric(testResults$occCitationResults[[1]]$`Number of Occurrences`) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 12 | WARN 4 | SKIP 17 | PASS 169 ]
  Error: Test failures
  Execution halted