Running 'testthat.R' [162s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(deepredeff)
  > 
  > test_check("deepredeff", reporter = c("progress", "list", "fail"))
  ✔ | F W  S  OK | Context
  
  ⠏ |          0 | encoding                                                       
  ⠙ |          2 | encoding                                                       
  ✔ |          8 | encoding
  
  ⠏ |          0 | ensemble_methods                                               
  ⠋ |          1 | ensemble_methods                                               
  ✔ |          3 | ensemble_methods
  
  ⠏ |          0 | prediction                                                     
  ✔ |     10   0 | prediction
  
  ⠏ |          0 | transform_input                                                
  ⠋ |   1      0 | transform_input                                                
  ⠸ |   2      2 | transform_input                                                
  ⠼ |   2      3 | transform_input                                                
  ⠧ |   2      6 | transform_input                                                
  ✔ |   2      7 | transform_input [3.8s]
  ────────────────────────────────────────────────────────────────────────────────
  Warning ('test-transform_input.R:2:3'): FASTA conversion to data frame works
  Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
  ℹ Please use `"name"` instead of `.data$name`
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-transform_input.R:2:3
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─... %>% class()
    5. ├─deepredeff::fasta_to_df(.)
    6. │ └─... %>% dplyr::select(c(.data$name, .data$sequence))
    7. ├─dplyr::select(., c(.data$name, .data$sequence))
    8. └─dplyr:::select.data.frame(., c(.data$name, .data$sequence))
    9.   └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call)
   10.     └─tidyselect:::eval_select_impl(...)
   11.       ├─tidyselect:::with_subscript_errors(...)
   12.       │ └─base::withCallingHandlers(...)
   13.       └─tidyselect:::vars_select_eval(...)
   14.         └─tidyselect:::walk_data_tree(expr, data_mask, context_mask)
   15.           └─tidyselect:::eval_c(expr, data_mask, context_mask)
   16.             └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
   17.               └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
   18.                 └─tidyselect:::eval_c(expr, data_mask, context_mask)
   19.                   └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
   20.                     └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
   21.                       └─tidyselect:::expr_kind(expr, context_mask, error_call)
   22.                         └─tidyselect:::call_kind(expr, context_mask, error_call)
  
  Warning ('test-transform_input.R:2:3'): FASTA conversion to data frame works
  Use of .data in tidyselect expressions was deprecated in tidyselect 1.2.0.
  ℹ Please use `"sequence"` instead of `.data$sequence`
  Backtrace:
       ▆
    1. ├─testthat::expect_equal(...) at test-transform_input.R:2:3
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─... %>% class()
    5. ├─deepredeff::fasta_to_df(.)
    6. │ └─... %>% dplyr::select(c(.data$name, .data$sequence))
    7. ├─dplyr::select(., c(.data$name, .data$sequence))
    8. └─dplyr:::select.data.frame(., c(.data$name, .data$sequence))
    9.   └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call)
   10.     └─tidyselect:::eval_select_impl(...)
   11.       ├─tidyselect:::with_subscript_errors(...)
   12.       │ └─base::withCallingHandlers(...)
   13.       └─tidyselect:::vars_select_eval(...)
   14.         └─tidyselect:::walk_data_tree(expr, data_mask, context_mask)
   15.           └─tidyselect:::eval_c(expr, data_mask, context_mask)
   16.             └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
   17.               └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
   18.                 └─tidyselect:::eval_c(expr, data_mask, context_mask)
   19.                   └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
   20.                     └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
   21.                       └─tidyselect:::expr_kind(expr, context_mask, error_call)
   22.                         └─tidyselect:::call_kind(expr, context_mask, error_call)
  ────────────────────────────────────────────────────────────────────────────────
  
  ══ Results ═════════════════════════════════════════════════════════════════════
  Duration: 4.5 s
  
  ── Skipped tests (10) ──────────────────────────────────────────────────────────
  • On CRAN (10): 'test-prediction.R:16:3', 'test-prediction.R:30:3',
    'test-prediction.R:41:3', 'test-prediction.R:52:3', 'test-prediction.R:65:3',
    'test-prediction.R:80:3', 'test-prediction.R:92:3',
    'test-prediction.R:105:3', 'test-prediction.R:123:3',
    'test-prediction.R:140:3'
  
  [ FAIL 0 | WARN 2 | SKIP 10 | PASS 18 ]
  > 
  > proc.time()
     user  system elapsed 
     6.07    0.57    6.64