Running 'testthat.R' [177s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > require(testthat)
  Loading required package: testthat
  > require(Rdiagnosislist)
  Loading required package: Rdiagnosislist
  
  Attaching package: 'Rdiagnosislist'
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, union
  
  > require(bit64)
  Loading required package: bit64
  Loading required package: bit
  
  Attaching package: 'bit'
  
  The following object is masked from 'package:base':
  
      xor
  
  Attaching package bit64
  package:bit64 (c) 2011-2017 Jens Oehlschlaegel
  creators: integer64 runif64 seq :
  coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bitstring
  logical operator: ! & | xor != == < <= >= >
  arithmetic operator: + - * / %/% %% ^
  math: sign abs sqrt log log2 log10
  math: floor ceiling trunc round
  querying: is.integer64 is.vector [is.atomic} [length] format print str
  values: is.na is.nan is.finite is.infinite
  aggregation: any all min max range sum prod
  cumulation: diff cummin cummax cumsum cumprod
  access: length<- [ [<- [[ [[<-
  combine: c rep cbind rbind as.data.frame
  WARNING don't use as subscripts
  WARNING semantics differ from integer
  for more help type ?bit64
  
  Attaching package: 'bit64'
  
  The following object is masked from 'package:utils':
  
      hashtab
  
  The following objects are masked from 'package:base':
  
      %in%, :, is.double, match, order, rank
  
  > require(data.table)
  Loading required package: data.table
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:bit':
  
      setattr
  
  > 
  > test_check("Rdiagnosislist")
  
  SNOMED CT tables loaded into environment:
                   NAME NROW NCOL MB
  1:            CONCEPT  449    5  0
  2:        DESCRIPTION 1407    9  0
  3:        EXTENDEDMAP  915   12  0
  4:            HISTORY  199   14  0
  5:              QUERY 1767    3  0
  6:             REFSET  428    5  0
  7:       RELATIONSHIP 1291   10  0
  8:          SIMPLEMAP  124    6  0
  9: STATEDRELATIONSHIP  329   10  0
                                                                                 COLS
  1:                              id,effectiveTime,active,moduleId,definitionStatusId
  2:                      id,effectiveTime,active,moduleId,conceptId,languageCode,...
  3:        effectiveTime,active,moduleId,refsetId,referencedComponentId,mapGroup,...
  4: OLDCONCEPTID,OLDCONCEPTSTATUS,NEWCONCEPTID,NEWCONCEPTSTATUS,PATH,ISAMBIGUOUS,...
  5:                                                 supertypeId,subtypeId,provenance
  6:                     effectiveTime,active,moduleId,refsetId,referencedComponentId
  7:                      id,effectiveTime,active,moduleId,sourceId,destinationId,...
  8:           effectiveTime,active,moduleId,refsetId,referencedComponentId,mapTarget
  9:                      id,effectiveTime,active,moduleId,sourceId,destinationId,...
                                                          KEY
  1:                                                       id
  2:                                                       id
  3: mapPriority,mapCategoryId,refsetId,referencedComponentId
  4:                                NEWCONCEPTID,OLDCONCEPTID
  5:                                    supertypeId,subtypeId
  6:                           refsetId,referencedComponentId
  7:                                   sourceId,typeId,active
  8:                 refsetId,mapTarget,referencedComponentId
  9:                                   sourceId,typeId,active
  Total: 0MB using type_size
  Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED,  : 
    object 'CONCEPT' not found
  Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED,  : 
    object 'RELATIONSHIP' not found
  Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED,  : 
    object 'SIMPLEMAP' not found
  Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED,  : 
    object 'REFSET' not found
  
  SNOMED CT tables loaded into environment:
                   NAME NROW NCOL MB
  1:            CONCEPT  449    5  0
  2:        DESCRIPTION 1407    9  0
  3:        EXTENDEDMAP  915   12  0
  4:            HISTORY  199   14  0
  5:              QUERY 1767    3  0
  6:             REFSET  428    5  0
  7:       RELATIONSHIP 1291   10  0
  8:          SIMPLEMAP  124    6  0
  9: STATEDRELATIONSHIP  329   10  0
                                                                                 COLS
  1:                              id,effectiveTime,active,moduleId,definitionStatusId
  2:                      id,effectiveTime,active,moduleId,conceptId,languageCode,...
  3:        effectiveTime,active,moduleId,refsetId,referencedComponentId,mapGroup,...
  4: OLDCONCEPTID,OLDCONCEPTSTATUS,NEWCONCEPTID,NEWCONCEPTSTATUS,PATH,ISAMBIGUOUS,...
  5:                                                 supertypeId,subtypeId,provenance
  6:                     effectiveTime,active,moduleId,refsetId,referencedComponentId
  7:                      id,effectiveTime,active,moduleId,sourceId,destinationId,...
  8:           effectiveTime,active,moduleId,refsetId,referencedComponentId,mapTarget
  9:                      id,effectiveTime,active,moduleId,sourceId,destinationId,...
                                                          KEY
  1:                                                       id
  2:                                                       id
  3: mapPriority,mapCategoryId,refsetId,referencedComponentId
  4:                                NEWCONCEPTID,OLDCONCEPTID
  5:                                    supertypeId,subtypeId
  6:                           refsetId,referencedComponentId
  7:                                   sourceId,typeId,active
  8:                 refsetId,mapTarget,referencedComponentId
  9:                                   sourceId,typeId,active
  Total: 0MB using type_size
  Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED,  : 
    object 'CONCEPT' not found
  Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED,  : 
    object 'SIMPLEMAP' not found
  Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED,  : 
    object 'REFSET' not found
  [ FAIL 0 | WARN 6 | SKIP 0 | PASS 124 ]
  
  [ FAIL 0 | WARN 6 | SKIP 0 | PASS 124 ]
  > 
  > proc.time()
     user  system elapsed 
    13.23    4.42   17.61