Running 'testthat.R' [219s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(samc)
  Version 2 and Version 3 had breaking changes. Check the package website for details.
  > 
  > test_check("samc")
  [1] 1
  [1] 2
  [1] 3
  [1] "Warning: Input contains disconnected regions. This does not work with the cond_passage() metric."
  [1] 4
  [1] "Warning: Input contains disconnected regions. This does not work with the cond_passage() metric."
  [1] 5
  [1] 6
  [1] 7
  [1] "Warning: Input contains disconnected regions. This does not work with the cond_passage() metric."
  [1] 8
  [1] "Warning: Input contains disconnected regions. This does not work with the cond_passage() metric."
  [1] "Warning: Some checks for manually created P matrices are still missing:"
  [1] "1) Discontinuous data will not work with the cond_passage() function."
  [1] "2) Every disconnected region of the graph must have at least one non-zero absorption value."
  [1] "Warning: Some checks for manually created P matrices are still missing:"
  [1] "1) Discontinuous data will not work with the cond_passage() function."
  [1] "2) Every disconnected region of the graph must have at least one non-zero absorption value."
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  
  Cached diagonal not found.
  Performing setup. This can take several minutes... Complete.
  Calculating matrix inverse diagonal...
  
  Computing: 100% (done)                         
  
  Complete                                                      
  Diagonal has been cached. Continuing with metric calculation...
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1495 ]
  > 
  > proc.time()
     user  system elapsed 
    42.32    1.73   44.29