Running 'testthat.R' [162s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(seqHMM)
  Please cite seqHMM in publications by using: 
  
    Helske S, Helske J (2019). Mixture Hidden Markov Models for Sequence Data: The seqHMM Package in R. Journal of
  Statistical Software, 88(3), 1-32. doi: 10.18637/jss.v088.i03.
  > 
  > test_check("seqHMM")
   [>] 4 distinct states appear in the data: 
       1 = a
       2 = b
       3 = c
       4 = d
   [>] state coding:
         [alphabet]  [label]  [long label] 
       1  a           a        a
       2  b           b        b
       3  c           c        c
       4  d           d        d
   [>] 5 sequences in the data set
   [>] min/max sequence length: 10/10
   [>] 4 distinct states appear in the data: 
       1 = a
       2 = b
       3 = c
       4 = d
   [>] state coding:
         [alphabet]  [label]  [long label] 
       1  a           a        a
       2  b           b        b
       3  c           c        c
       4  d           d        d
   [>] 5 sequences in the data set
   [>] min/max sequence length: 10/10
   [>] 5 distinct states appear in the data: 
       1 = a
       2 = b
       3 = c
       4 = d
       5 = e
   [>] state coding:
         [alphabet]  [label]  [long label] 
       1  a           a        a
       2  b           b        b
       3  c           c        c
       4  d           d        d
       5  e           e        e
   [>] 5 sequences in the data set
   [>] min/max sequence length: 10/10
   [>] 4 distinct states appear in the data: 
       1 = a
       2 = b
       3 = c
       4 = d
   [>] state coding:
         [alphabet]  [label]  [long label] 
       1  a           a        a
       2  b           b        b
       3  c           c        c
       4  d           d        d
   [>] 5 sequences in the data set
   [>] min/max sequence length: 10/10
   [>] 5 distinct states appear in the data: 
       1 = a
       2 = b
       3 = c
       4 = d
       5 = e
   [>] state coding:
         [alphabet]  [label]  [long label] 
       1  a           a        a
       2  b           b        b
       3  c           c        c
       4  d           d        d
       5  e           e        e
   [>] 5 sequences in the data set
   [>] min/max sequence length: 10/10
  Initial probabilities :
  State 1 State 2 
        1       0 
  
  Transition probabilities :
           to
  from      State 1 State 2
    State 1   0.715   0.285
    State 2   0.277   0.723
  
  Emission probabilities :
             symbol_names
  state_names      1     2
      State 1 0.5725 0.428
      State 2 0.0816 0.918
  
  Coefficients :
               Cluster 1 Cluster 2
  (Intercept)          0     -1.10
  covariate_1          0      3.82
  covariate_2B         0     -1.98
  
  Initial probabilities :
  Cluster 1 :
  coin 1 coin 2 
       1      0 
  
  Cluster 2 :
  coin 3 coin 4 
       1      0 
  
  Transition probabilities :
  Cluster 1 :
          to
  from     coin 1 coin 2
    coin 1  0.867  0.133
    coin 2  0.000  1.000
  
  Cluster 2 :
          to
  from     coin 3 coin 4
    coin 3  0.969 0.0306
    coin 4  0.029 0.9710
  
  Emission probabilities :
  Cluster 1 :
          heads tails
  coin 1 0.7457 0.254
  coin 2 0.0486 0.951
  
  Cluster 2 :
          heads tails
  coin 3 0.0829 0.917
  coin 4 0.7905 0.209
  
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 88 ]
  > 
  > proc.time()
     user  system elapsed 
     3.14    0.57    3.71