Running 'testthat-active_snw.R' [181s]
  Running 'testthat-clustering.R' [158s]
  Running 'testthat-comparison.R' [3s]
  Running 'testthat-core.R' [170s]
  Running 'testthat-data_generation.R' [3s]
  Running 'testthat-enrichment.R' [193s]
  Running 'testthat-scoring.R' [3s]
  Running 'testthat-utility.R' [12s]
  Running 'testthat-visualization.R' [4s]
  Running 'testthat-zzz.R' [3s]
Running the tests in 'tests/testthat-active_snw.R' failed.
Complete output:
  > library(testthat)
  > library(pathfindR)
  Loading required package: pathfindR.data
  ##############################################################################
                          Welcome to pathfindR!
  
  Please cite the article below if you use pathfindR in published reseach:
  
  Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive
  Identification of Enriched Pathways in Omics Data Through Active Subnetworks.
  Front. Genet. doi:10.3389/fgene.2019.00858
  
  ##############################################################################
  > 
  > test_check("pathfindR", filter = "active_snw_search")
  [ FAIL 0 | WARN 0 | SKIP 3 | PASS 41 ]
  
  ══ Skipped tests (3) ═══════════════════════════════════════════════════════════
  • On CRAN (3): 'test-active_snw_search.R:83:5',
    'test-active_snw_search.R:108:5', 'test-active_snw_search.R:186:5'
  
  [ FAIL 0 | WARN 0 | SKIP 3 | PASS 41 ]
  > 
  > proc.time()
     user  system elapsed 
    21.75    0.82   22.89 
Running the tests in 'tests/testthat-clustering.R' failed.
Complete output:
  > library(testthat)
  > library(pathfindR)
  Loading required package: pathfindR.data
  ##############################################################################
                          Welcome to pathfindR!
  
  Please cite the article below if you use pathfindR in published reseach:
  
  Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive
  Identification of Enriched Pathways in Omics Data Through Active Subnetworks.
  Front. Genet. doi:10.3389/fgene.2019.00858
  
  ##############################################################################
  > 
  > test_check("pathfindR", filter = "clustering")
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 79 ]
  > 
  > proc.time()
     user  system elapsed 
     3.78    0.57    4.68 
Running the tests in 'tests/testthat-core.R' failed.
Complete output:
  > library(testthat)
  > library(pathfindR)
  Loading required package: pathfindR.data
  ##############################################################################
                          Welcome to pathfindR!
  
  Please cite the article below if you use pathfindR in published reseach:
  
  Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive
  Identification of Enriched Pathways in Omics Data Through Active Subnetworks.
  Front. Genet. doi:10.3389/fgene.2019.00858
  
  ##############################################################################
  > 
  > test_check("pathfindR", filter = "core")
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
  > 
  > proc.time()
     user  system elapsed 
     1.70    0.43    2.43 
Running the tests in 'tests/testthat-enrichment.R' failed.
Complete output:
  > library(testthat)
  > library(pathfindR)
  Loading required package: pathfindR.data
  ##############################################################################
                          Welcome to pathfindR!
  
  Please cite the article below if you use pathfindR in published reseach:
  
  Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive
  Identification of Enriched Pathways in Omics Data Through Active Subnetworks.
  Front. Genet. doi:10.3389/fgene.2019.00858
  
  ##############################################################################
  > 
  > test_check("pathfindR", filter = "enrichment")
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 48 ]
  > 
  > proc.time()
     user  system elapsed 
    23.10    1.14   24.59