Running 'spelling.R' [0s]
  Running 'testthat.R' [168s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(NiLeDAM)
  
  ***********************************************************
  
        Welcome to the NiLeDAM package
        An online graphical interface is available at:
          http://shiny.nathalievilla.org/niledam
          or run: liveNILEDAM()
        Citation details with citation('NiLeDAM')
  
        For questions/remarks, please contact the maintainer:
          nathalie.vialaneix@inrae.fr
  
  ***********************************************************
  > 
  > test_check("NiLeDAM")
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Age estimation...
  MC simulations...
   (it might take a while if 'nloops' is large...)
  
  32 ages and confidence intervals estimated from 10 bootstrap samples.
   Summary:
     Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
    447.0   491.2   505.5   515.3   546.5   598.0 
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 1 population(s).
  
      The ages are found to be unlikely coming from 1 population(s) at level 5 %.
      Chi2 test statistic: 48.38098  ~ df: 31 
  
  Test if the 32 estimated ages are coming from 3 population(s).
  
      The ages are not found to be unlikely coming from 3 population(s) at level 5 %.
      Chi2 test statistic: 7.993151  ~ df: 29 
  
      Estimated ages: 563 505 476 
  
      Population numbers:
   1 3 1 2 1 1 1 1 3 2 3 2 2 2 3 1 2 2 2 1 1 2 3 2 3 2 3 3 2 2 2 2Test if the 32 estimated ages are coming from 3 population(s).
  
      The ages are not found to be unlikely coming from 3 population(s) at level 5 %.
      Chi2 test statistic: 7.993151  ~ df: 29 
  
      Estimated ages: 563 505 476 
  
      Population numbers:
   1 3 1 2 1 1 1 1 3 2 3 2 2 2 3 1 2 2 2 1 1 2 3 2 3 2 3 3 2 2 2 2Test if the 32 estimated ages are coming from 3 population(s).
  
      The ages are not found to be unlikely coming from 3 population(s) at level 5 %.
      Chi2 test statistic: 7.993151  ~ df: 29 
  
      Estimated ages: 563 505 476 
  
      Population numbers:
   1 3 1 2 1 1 1 1 3 2 3 2 2 2 3 1 2 2 2 1 1 2 3 2 3 2 3 3 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   1 2 3 
  population(s).
  
      The ages are found to be likely coming from 2 population(s) at level 5 %.
      Chi2 test statistic: 21.49746  ~ df: 30 
  
      Estimated ages: 563 494 
  
      Population numbers:
   1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from
   4 5 6 
  population(s).
  
      No valid number of populations in the sequence tested. ( 4  to  6 )
  
      The ages are not found to be likely coming from 4 population(s) at level 5 %.
      Chi2 test statistic: 12.62986  ~ df: 28 
  
      Estimated ages: 563 520 489 NaN 
  
      Population numbers:
   1 3 1 3 1 1 1 1 3 3 3 3 2 2 3 1 3 2 3 1 1 3 3 3 3 3 3 3 3 3 2 3 
  
  Test if the 32 estimated ages are coming from
   4 5 6 
  population(s).
  
      No valid number of populations in the sequence tested. ( 4  to  6 )
  
      The ages are not found to be likely coming from 4 population(s) at level 5 %.
      Chi2 test statistic: 12.62986  ~ df: 28 
  
      Estimated ages: 563 520 489 NaN 
  
      Population numbers:
   1 3 1 3 1 1 1 1 3 3 3 3 2 2 3 1 3 2 3 1 1 3 3 3 3 3 3 3 3 3 2 3 
  
  Test if the 32 estimated ages are coming from
   4 5 6 
  population(s).
  
      No valid number of populations in the sequence tested. ( 4  to  6 )
  
      The ages are not found to be likely coming from 4 population(s) at level 5 %.
      Chi2 test statistic: 12.62986  ~ df: 28 
  
      Estimated ages: 563 520 489 NaN 
  
      Population numbers:
   1 3 1 3 1 1 1 1 3 3 3 3 2 2 3 1 3 2 3 1 1 3 3 3 3 3 3 3 3 3 2 3 
  
  Test if the 32 estimated ages are coming from
   4 5 6 
  population(s).
  
      No valid number of populations in the sequence tested. ( 4  to  6 )
  
      The ages are not found to be likely coming from 4 population(s) at level 5 %.
      Chi2 test statistic: 12.62986  ~ df: 28 
  
      Estimated ages: 563 520 489 NaN 
  
      Population numbers:
   1 3 1 3 1 1 1 1 3 3 3 3 2 2 3 1 3 2 3 1 1 3 3 3 3 3 3 3 3 3 2 3 
  
  [ FAIL 0 | WARN 10 | SKIP 0 | PASS 57 ]
  
  [ FAIL 0 | WARN 10 | SKIP 0 | PASS 57 ]
  > 
  > proc.time()
     user  system elapsed 
     3.92    0.57    4.50