Running 'testthat.R' [180s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(greatR)
  > data.table::setDTthreads(2) # Only needed to avoid issues on CRAN
  > 
  > test_check("greatR", reporter = c("progress", "list", "fail"))
  ✔ | F W  S  OK | Context
  
  ⠏ |          0 | dynamics                                                       i Will process 1 gene.
  i Using estimated standard deviation, as no `exp_sd` was provided.
  
  ⠋ |          1 | dynamics                                                       
  ⠸ |          4 | dynamics                                                       
  ✔ |          4 | dynamics
  
  ⠏ |          0 | optimisation                                                   ℹ Will process 1 gene.
  ℹ Using estimated standard deviation, as no `exp_sd` was provided.
  
  ⠹ |          3 | optimisation                                                   
  ✔ |          4 | optimisation [1.2s]
  
  ⠏ |          0 | registration                                                   i Will process 10 genes.
  i Using estimated standard deviation, as no `exp_sd` was provided.
  i Will process 10 genes.
  i Using estimated standard deviation, as no `exp_sd` was provided.
  i Will process 10 genes.
  i Using estimated standard deviation, as no `exp_sd` was provided.
  
  ⠙ |          2 | registration                                                   i Will process 1 gene.
  i Using estimated standard deviation, as no `exp_sd` was provided.
  
  ⠏ |         10 | registration                                                   
  ⠴ |         16 | registration                                                   
  ⠏ |         20 | registration                                                   
  ⠋ |         21 | registration                                                   
  -- Validating input data -------------------------------------------------------
  
  ⠦ |         27 | registration                                                   
  ✔ |         27 | registration [1.2s]
  
  ⠏ |          0 | results                                                        
  ⠸ |          4 | results                                                        
  ⠏ |         10 | results                                                        
  ⠙ |         12 | results                                                        
  ⠼ |         15 | results                                                        
  ✔ |         20 | results [1.1s]
  
  ⠏ |          0 | utils-calcs                                                    ℹ Using estimated standard deviation, as no `exp_sd` was provided.
  i Using estimated standard deviation, as no `exp_sd` was provided.
  i Using estimated standard deviation, as no `exp_sd` was provided.
  
  ⠇ |          9 | utils-calcs                                                    
  ✔ |         10 | utils-calcs
  
  ⠏ |          0 | utils                                                          ℹ Will process 1 gene.
  ℹ Using estimated standard deviation, as no `exp_sd` was provided.
  
  ⠙ |          2 | utils                                                          
  ⠏ |         10 | utils                                                          
  ⠸ |         24 | utils                                                          
  ✔ |         40 | utils
  
  ══ Results ═════════════════════════════════════════════════════════════════════
  Duration: 4.8 s
  
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 105 ]
  > 
  > proc.time()
     user  system elapsed 
     4.96    0.50    5.46