Running ‘testthat.R’ [30m/38m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(fqacalc)
  > 
  > test_check("fqacalc")
  Species GROUND does not have a wetness coefficient. It will be omitted from wetness metric calculations. Species WATER does not have a wetness coefficient. It will be omitted from wetness metric calculations. Species GROUND does not have a wetness coefficient. It will be omitted from wetness metric calculations.
  montana_2017 does not have wetness coefficients, wetland metrics cannot be calculated.
  Species BOOP not listed in database. It will be discarded.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once. Cover values of duplicate species will be added together.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  POTENTILLA NANA is a synonym to multiple species. It will be omitted. To include this species, use the accepted scientific name.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  CAREX MURICATA is a synonym to multiple species. It will be omitted. To include this species, use the accepted scientific name.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  NAs were introduced during the conversion to the braun-blanquet system. Species with NA cover values will be removed.
  Duplicate entries detected in the same plot. Duplicates in the same plot will be counted once. Cover values of duplicate species will be added together.
  Duplicate entries detected in the same plot. Duplicates in the same plot will be counted once. Cover values of duplicate species will be added together.
  Duplicate entries detected in the same plot. Duplicates in the same plot will be counted once. Cover values of duplicate species will be added together.
  Duplicate entries detected. Duplicates will only be counted once. Cover values of duplicate species will be added together.
  Duplicate entries detected. Duplicates will only be counted once.
  montana_2017 does not have wetness coefficients, wetland metrics cannot be calculated.
  montana_2017 does not have wetness coefficients, wetland metrics cannot be calculated.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  Species GROUND does not have a wetness coefficient. It will be omitted from wetness metric calculations. Species WATER does not have a wetness coefficient. It will be omitted from wetness metric calculations.
  Species GROUND not listed in database. It will be discarded.Species WATER not listed in database. It will be discarded.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX MURICATA is a synonym to multiple species. It will be omitted. To include this species, use the accepted scientific name.
  POTENTILLA NANA is a synonym to multiple species. It will be omitted. To include this species, use the accepted scientific name.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.  If allow_duplicates = FALSE, cover values of synonyms will be added together.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.  If allow_duplicates = FALSE, cover values of synonyms will be added together.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.  If allow_duplicates = FALSE, cover values of synonyms will be added together.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.  If allow_duplicates = FALSE, cover values of synonyms will be added together.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.  If allow_duplicates = FALSE, cover values of synonyms will be added together.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  Species ABIES BIFOLIA, ABIES LASIOCARPA are synonyms and will be treated as one species.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  montana_2017 does not have wetness coefficients, wetland metrics cannot be calculated.
  Species BOOP not listed in database. It will be discarded.
  Species BOOP not listed in database. It will be discarded.
  Species BOOP not listed in database. It will be discarded.
  Species BOOP not listed in database. It will be discarded.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument. Species ACER GRANDIDENTATUM is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  Species BOOP not listed in database. It will be discarded.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  Species BOOP not listed in database. It will be discarded.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument. Species ACER GRANDIDENTATUM is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  Species BOOP not listed in database. It will be discarded.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  Species BOOP not listed in database. It will be discarded.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument. Species ACER GRANDIDENTATUM is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  Species BOOP not listed in database. It will be discarded.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  Species BOOP not listed in database. It will be discarded.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument. Species ACER GRANDIDENTATUM is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  Species BOOP not listed in database. It will be discarded.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  Species BOOP not listed in database. It will be discarded.
  Species ABRONIA FRAGRANS is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument. Species ACER GRANDIDENTATUM is recognized but has not been assigned a C Value. If using the shiny web application, this species will only be included in metrics that don't require a C Value. Otherwise, the option to include species with no C Value in certain metrics can be set using the 'allow_no_c' argument.
  montana_2017 does not have wetness coefficients, wetland metrics cannot be calculated.
  Species BOOP not listed in database. It will be discarded.
  montana_2017 does not have wetness coefficients, wetland metrics cannot be calculated.
  Species BOOP not listed in database. It will be discarded.
  Duplicate entries detected in the same plot. Duplicates in the same plot will be counted once. Cover values of duplicate species will be added together.
  Species c("GROUND", "WATER", "GROUND") does not have a wetness coefficient. It will be omitted from wetness metric calculations.
  Species c("GROUND", "WATER", "GROUND") does not have a wetness coefficient. It will be omitted from wetness metric calculations.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Species TYPO not listed in database. It will be discarded.
  Species TYPO not listed in database. It will be discarded.
  Species TYPO not listed in database. It will be discarded.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Species TYPO not listed in database. It will be discarded.
  Species TYPO not listed in database. It will be discarded.
  Species TYPO not listed in database. It will be discarded.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Species TYPO not listed in database. It will be discarded.
  Species TYPO not listed in database. It will be discarded.
  Species TYPO not listed in database. It will be discarded.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Species TYPO not listed in database. It will be discarded.
  Species TYPO not listed in database. It will be discarded.
  Species TYPO not listed in database. It will be discarded.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  Duplicate entries detected. Duplicates will only be counted once.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  The Wyoming FQA database is associated with multiple wetland indicator status regions. This package defaults to the Arid West wetland indicator region when calculating Wyoming metrics.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  montana_2017 does not have wetness coefficients, wetland metrics cannot be calculated.
  Species BOOP not listed in database. It will be discarded.
  Duplicate entries detected. Duplicates will only be counted once.
  Species CAREX FOENEA not listed in database. It will be discarded.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  Duplicate entries detected. Duplicates will only be counted once.
  CAREX FOENEA is an accepted scientific name and a synonym. It will default to accepted scientific name.
  The Colorado FQA database is associated with multiple wetland indicator status regions. This package defaults to the Western Mountains, Valleys, and Coasts indicator region when calculating Colorado metrics.
  [ FAIL 0 | WARN 0 | SKIP 0 | PASS 179 ]
  > 
  > proc.time()
     user  system elapsed 
   15.243   0.635  20.342 
  Assertion failure at kmp_runtime.cpp(6891): temp_reg_status_file_name.
  OMP: Error #13: Assertion failure at kmp_runtime.cpp(6891).
  OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://github.com/llvm/llvm-project/issues/.
  Assertion failure at kmp_runtime.cpp(6891): temp_reg_status_file_name.
  OMP: Error #13: Assertion failure at kmp_runtime.cpp(6891).
  OMP: Hint Please submit a bug report with this message, compile and run commands used, and machine configuration info including native compiler and operating system versions. Faster response will be obtained by including all program sources. For information on submitting this issue, please see https://github.com/llvm/llvm-project/issues/.
  Killed